Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166060 | XP_024639171.1 | 93.277 | 238 | 13 | 3 | 1 | 235 | 1 | 238 | 5.60e-144 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166060 | A0A072VK24 | 93.277 | 238 | 13 | 3 | 1 | 235 | 1 | 238 | 2.68e-144 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa0166060 | 0.814701 | 1.347444e-51 | -8.615850e-47 |
| Msa0002060 | Msa0166060 | 0.809878 | 1.521577e-50 | -8.615850e-47 |
| Msa0016160 | Msa0166060 | 0.802137 | 6.471876e-49 | -8.615850e-47 |
| Msa0025660 | Msa0166060 | 0.882815 | 7.591143e-71 | -8.615850e-47 |
| Msa0037300 | Msa0166060 | 0.808482 | 3.030685e-50 | -8.615850e-47 |
| Msa0056370 | Msa0166060 | 0.801294 | 9.636731e-49 | -8.615850e-47 |
| Msa0058970 | Msa0166060 | 0.826697 | 2.353538e-54 | -8.615850e-47 |
| Msa0073220 | Msa0166060 | 0.952649 | 1.534261e-110 | -8.615850e-47 |
| Msa0075080 | Msa0166060 | 0.824980 | 6.013860e-54 | -8.615850e-47 |
| Msa0076590 | Msa0166060 | 0.809892 | 1.511494e-50 | -8.615850e-47 |
| Msa0096830 | Msa0166060 | 0.801495 | 8.762997e-49 | -8.615850e-47 |
| Msa0102290 | Msa0166060 | 0.803106 | 4.082829e-49 | -8.615850e-47 |
| Msa0109870 | Msa0166060 | 0.800333 | 1.513941e-48 | -8.615850e-47 |
| Msa0116940 | Msa0166060 | -0.808648 | 2.793373e-50 | -8.615850e-47 |
| Msa0121420 | Msa0166060 | 0.951589 | 1.484622e-109 | -8.615850e-47 |
| Msa0122930 | Msa0166060 | 0.821634 | 3.638467e-53 | -8.615850e-47 |
| Msa0141770 | Msa0166060 | 0.808119 | 3.622057e-50 | -8.615850e-47 |
| Msa0145590 | Msa0166060 | 0.806280 | 8.880720e-50 | -8.615850e-47 |
| Msa0147070 | Msa0166060 | 0.831016 | 2.119100e-55 | -8.615850e-47 |
| Msa0151790 | Msa0166060 | 0.821497 | 3.912976e-53 | -8.615850e-47 |
| Msa0155550 | Msa0166060 | 0.823958 | 1.046480e-53 | -8.615850e-47 |
| Msa0156260 | Msa0166060 | 0.822682 | 2.078477e-53 | -8.615850e-47 |
| Msa0162170 | Msa0166060 | 0.818486 | 1.912070e-52 | -8.615850e-47 |
| Msa0164530 | Msa0166060 | 0.817997 | 2.466635e-52 | -8.615850e-47 |
| Msa0166060 | Msa0168470 | 0.822943 | 1.807462e-53 | -8.615850e-47 |
| Msa0166060 | Msa0178020 | 0.804477 | 2.120150e-49 | -8.615850e-47 |
| Msa0166060 | Msa0188670 | 0.842207 | 2.976318e-58 | -8.615850e-47 |
| Msa0166060 | Msa0202630 | 0.808061 | 3.726096e-50 | -8.615850e-47 |
| Msa0166060 | Msa0206890 | 0.807795 | 4.244450e-50 | -8.615850e-47 |
| Msa0166060 | Msa0234930 | 0.808018 | 3.805452e-50 | -8.615850e-47 |
| Msa0166060 | Msa0236350 | 0.802517 | 5.402772e-49 | -8.615850e-47 |
| Msa0166060 | Msa0255770 | 0.804655 | 1.946173e-49 | -8.615850e-47 |
| Msa0166060 | Msa0266100 | 0.813967 | 1.957341e-51 | -8.615850e-47 |
| Msa0166060 | Msa0270230 | 0.838736 | 2.408172e-57 | -8.615850e-47 |
| Msa0166060 | Msa0273270 | 0.803785 | 2.953277e-49 | -8.615850e-47 |
| Msa0166060 | Msa0273550 | 0.800955 | 1.130560e-48 | -8.615850e-47 |
| Msa0166060 | Msa0274870 | 0.815920 | 7.220726e-52 | -8.615850e-47 |
| Msa0166060 | Msa0291490 | 0.807175 | 5.746756e-50 | -8.615850e-47 |
| Msa0166060 | Msa0294170 | 0.821143 | 4.722279e-53 | -8.615850e-47 |
| Msa0166060 | Msa0296490 | 0.822471 | 2.327967e-53 | -8.615850e-47 |
| Msa0166060 | Msa0307820 | 0.841869 | 3.658212e-58 | -8.615850e-47 |
| Msa0166060 | Msa0311910 | 0.811032 | 8.575988e-51 | -8.615850e-47 |
| Msa0166060 | Msa0313550 | 0.819719 | 1.002186e-52 | -8.615850e-47 |
| Msa0166060 | Msa0371050 | 0.834359 | 3.138101e-56 | -8.615850e-47 |
| Msa0166060 | Msa0380440 | 0.812400 | 4.321608e-51 | -8.615850e-47 |
| Msa0166060 | Msa0409300 | -0.809812 | 1.572782e-50 | -8.615850e-47 |
| Msa0166060 | Msa0412470 | 0.834434 | 3.003988e-56 | -8.615850e-47 |
| Msa0166060 | Msa0415060 | 0.804655 | 1.945943e-49 | -8.615850e-47 |
| Msa0166060 | Msa0415860 | 0.803383 | 3.578612e-49 | -8.615850e-47 |
| Msa0166060 | Msa0423820 | 0.805067 | 1.596155e-49 | -8.615850e-47 |
| Msa0166060 | Msa0425150 | 0.817049 | 4.034422e-52 | -8.615850e-47 |
| Msa0166060 | Msa0428280 | 0.825525 | 4.470359e-54 | -8.615850e-47 |
| Msa0166060 | Msa0429560 | 0.812643 | 3.823920e-51 | -8.615850e-47 |
| Msa0166060 | Msa0438990 | 0.823847 | 1.111010e-53 | -8.615850e-47 |
| Msa0166060 | Msa0439090 | 0.807436 | 5.058820e-50 | -8.615850e-47 |
| Msa0166060 | Msa0463980 | 0.805488 | 1.303063e-49 | -8.615850e-47 |
| Msa0166060 | Msa0464730 | 0.813096 | 3.043386e-51 | -8.615850e-47 |
| Msa0166060 | Msa0474640 | 0.801592 | 8.373303e-49 | -8.615850e-47 |
| Msa0166060 | Msa0485260 | 0.802856 | 4.600441e-49 | -8.615850e-47 |
| Msa0166060 | Msa0486240 | 0.818978 | 1.478121e-52 | -8.615850e-47 |
| Msa0166060 | Msa0503220 | -0.820151 | 7.982631e-53 | -8.615850e-47 |
| Msa0166060 | Msa0504740 | 0.804162 | 2.466449e-49 | -8.615850e-47 |
| Msa0166060 | Msa0506740 | 0.803538 | 3.323964e-49 | -8.615850e-47 |
| Msa0166060 | Msa0515730 | 0.829241 | 5.745754e-55 | -8.615850e-47 |
| Msa0166060 | Msa0519090 | 0.836563 | 8.696734e-57 | -8.615850e-47 |
| Msa0166060 | Msa0520450 | 0.801910 | 7.204127e-49 | -8.615850e-47 |
| Msa0166060 | Msa0521840 | 0.822594 | 2.179143e-53 | -8.615850e-47 |
| Msa0166060 | Msa0552920 | 0.811684 | 6.188917e-51 | -8.615850e-47 |
| Msa0166060 | Msa0555210 | 0.808920 | 2.443481e-50 | -8.615850e-47 |
| Msa0166060 | Msa0583180 | 0.809667 | 1.689700e-50 | -8.615850e-47 |
| Msa0166060 | Msa0583810 | 0.813323 | 2.712840e-51 | -8.615850e-47 |
| Msa0166060 | Msa0600940 | 0.809096 | 2.240517e-50 | -8.615850e-47 |
| Msa0166060 | Msa0619450 | 0.806246 | 9.028420e-50 | -8.615850e-47 |
| Msa0166060 | Msa0619960 | 0.813214 | 2.865918e-51 | -8.615850e-47 |
| Msa0166060 | Msa0620050 | 0.828442 | 8.972327e-55 | -8.615850e-47 |
| Msa0166060 | Msa0623350 | 0.804274 | 2.337148e-49 | -8.615850e-47 |
| Msa0166060 | Msa0624700 | 0.828734 | 7.626011e-55 | -8.615850e-47 |
| Msa0166060 | Msa0647460 | 0.801089 | 1.061254e-48 | -8.615850e-47 |
| Msa0166060 | Msa0647480 | 0.804278 | 2.332917e-49 | -8.615850e-47 |
| Msa0166060 | Msa0649140 | 0.821874 | 3.201679e-53 | -8.615850e-47 |
| Msa0166060 | Msa0651120 | 0.818893 | 1.545788e-52 | -8.615850e-47 |
| Msa0166060 | Msa0659580 | 0.806399 | 8.384886e-50 | -8.615850e-47 |
| Msa0166060 | Msa0687740 | 0.801868 | 7.348019e-49 | -8.615850e-47 |
| Msa0166060 | Msa0699200 | 0.810469 | 1.135295e-50 | -8.615850e-47 |
| Msa0166060 | Msa0705670 | 0.802341 | 5.875412e-49 | -8.615850e-47 |
| Msa0166060 | Msa0706490 | 0.807752 | 4.335617e-50 | -8.615850e-47 |
| Msa0166060 | Msa0711510 | 0.800891 | 1.165032e-48 | -8.615850e-47 |
| Msa0166060 | Msa0745010 | 0.802702 | 4.948274e-49 | -8.615850e-47 |
| Msa0166060 | Msa0745270 | 0.811077 | 8.382626e-51 | -8.615850e-47 |
| Msa0166060 | Msa0762860 | 0.845876 | 3.088610e-59 | -8.615850e-47 |
| Msa0166060 | Msa0762900 | 0.841185 | 5.539518e-58 | -8.615850e-47 |
| Msa0166060 | Msa0779790 | 0.801033 | 1.089859e-48 | -8.615850e-47 |
| Msa0166060 | Msa0790380 | 0.834934 | 2.248780e-56 | -8.615850e-47 |
| Msa0166060 | Msa0825960 | 0.801338 | 9.440457e-49 | -8.615850e-47 |
| Msa0166060 | Msa0828810 | 0.800050 | 1.728845e-48 | -8.615850e-47 |
| Msa0166060 | Msa0831710 | 0.818889 | 1.548943e-52 | -8.615850e-47 |
| Msa0166060 | Msa0842660 | 0.808856 | 2.521806e-50 | -8.615850e-47 |
| Msa0166060 | Msa0862300 | 0.800867 | 1.178215e-48 | -8.615850e-47 |
| Msa0166060 | Msa0862960 | 0.818526 | 1.871986e-52 | -8.615850e-47 |
| Msa0166060 | Msa0879820 | 0.806188 | 9.285668e-50 | -8.615850e-47 |
| Msa0166060 | Msa0967940 | 0.808622 | 2.828890e-50 | -8.615850e-47 |
| Msa0166060 | Msa1013560 | 0.826578 | 2.512662e-54 | -8.615850e-47 |
| Msa0166060 | Msa1032410 | 0.808494 | 3.012579e-50 | -8.615850e-47 |
| Msa0166060 | Msa1033120 | 0.802791 | 4.743119e-49 | -8.615850e-47 |
| Msa0166060 | Msa1045750 | 0.809238 | 2.088601e-50 | -8.615850e-47 |
| Msa0166060 | Msa1054480 | 0.805500 | 1.295228e-49 | -8.615850e-47 |
| Msa0166060 | Msa1054620 | 0.808087 | 3.679499e-50 | -8.615850e-47 |
| Msa0166060 | Msa1076070 | 0.800216 | 1.599366e-48 | -8.615850e-47 |
| Msa0166060 | Msa1076530 | 0.802980 | 4.335279e-49 | -8.615850e-47 |
| Msa0166060 | Msa1127530 | 0.800188 | 1.620259e-48 | -8.615850e-47 |
| Msa0166060 | Msa1129540 | -0.801088 | 1.061713e-48 | -8.615850e-47 |
| Msa0166060 | Msa1131300 | 0.825890 | 3.662533e-54 | -8.615850e-47 |
| Msa0166060 | Msa1134800 | 0.809641 | 1.711650e-50 | -8.615850e-47 |
| Msa0166060 | Msa1154020 | 0.800620 | 1.323120e-48 | -8.615850e-47 |
| Msa0166060 | Msa1163130 | 0.807882 | 4.067662e-50 | -8.615850e-47 |
| Msa0166060 | Msa1177300 | 0.827207 | 1.776805e-54 | -8.615850e-47 |
| Msa0166060 | Msa1177960 | 0.836633 | 8.348564e-57 | -8.615850e-47 |
| Msa0166060 | Msa1190670 | 0.810536 | 1.097805e-50 | -8.615850e-47 |
| Msa0166060 | Msa1206500 | 0.824316 | 8.624611e-54 | -8.615850e-47 |
| Msa0166060 | Msa1208630 | 0.827643 | 1.396618e-54 | -8.615850e-47 |
| Msa0166060 | Msa1214080 | 0.813782 | 2.150146e-51 | -8.615850e-47 |
| Msa0166060 | Msa1223520 | 0.803450 | 3.465809e-49 | -8.615850e-47 |
| Msa0166060 | Msa1237750 | 0.810435 | 1.154657e-50 | -8.615850e-47 |
| Msa0166060 | Msa1244940 | 0.818234 | 2.179630e-52 | -8.615850e-47 |
| Msa0166060 | Msa1250500 | 0.808185 | 3.505811e-50 | -8.615850e-47 |
| Msa0166060 | Msa1264670 | 0.820698 | 5.976687e-53 | -8.615850e-47 |
| Msa0166060 | Msa1267560 | 0.839549 | 1.482940e-57 | -8.615850e-47 |
| Msa0166060 | Msa1269550 | 0.813195 | 2.894885e-51 | -8.615850e-47 |
| Msa0166060 | Msa1272200 | 0.831565 | 1.553230e-55 | -8.615850e-47 |
| Msa0166060 | Msa1296930 | 0.804479 | 2.117925e-49 | -8.615850e-47 |
| Msa0166060 | Msa1297500 | 0.818689 | 1.719317e-52 | -8.615850e-47 |
| Msa0166060 | Msa1297550 | 0.807373 | 5.216658e-50 | -8.615850e-47 |
| Msa0166060 | Msa1297560 | 0.812223 | 4.723057e-51 | -8.615850e-47 |
| Msa0166060 | Msa1298180 | 0.823663 | 1.226853e-53 | -8.615850e-47 |
| Msa0166060 | Msa1305650 | 0.803443 | 3.478330e-49 | -8.615850e-47 |
| Msa0166060 | Msa1324940 | 0.802153 | 6.421441e-49 | -8.615850e-47 |
| Msa0166060 | Msa1325260 | 0.817086 | 3.957429e-52 | -8.615850e-47 |
| Msa0166060 | Msa1325270 | 0.822583 | 2.191878e-53 | -8.615850e-47 |
| Msa0166060 | Msa1334690 | 0.813378 | 2.637847e-51 | -8.615850e-47 |
| Msa0166060 | Msa1349720 | 0.827603 | 1.428321e-54 | -8.615850e-47 |
| Msa0166060 | Msa1375120 | 0.849055 | 4.134174e-60 | -8.615850e-47 |
| Msa0166060 | Msa1375600 | 0.828381 | 9.278635e-55 | -8.615850e-47 |
| Msa0166060 | Msa1376510 | 0.805211 | 1.489720e-49 | -8.615850e-47 |
| Msa0166060 | Msa1376560 | 0.823340 | 1.460474e-53 | -8.615850e-47 |
| Msa0166060 | Msa1376590 | 0.813327 | 2.707660e-51 | -8.615850e-47 |
| Msa0166060 | Msa1386820 | 0.801722 | 7.873418e-49 | -8.615850e-47 |
| Msa0166060 | Msa1388610 | 0.804141 | 2.490379e-49 | -8.615850e-47 |
| Msa0166060 | Msa1403590 | 0.829835 | 4.122263e-55 | -8.615850e-47 |
| Msa0166060 | Msa1411390 | 0.804515 | 2.082036e-49 | -8.615850e-47 |
| Msa0166060 | Msa1412750 | 0.805105 | 1.567364e-49 | -8.615850e-47 |
| Msa0166060 | Msa1426880 | 0.809731 | 1.637020e-50 | -8.615850e-47 |
| Msa0166060 | Msa1430010 | 0.807443 | 5.042456e-50 | -8.615850e-47 |
| Msa0166060 | Msa1439880 | 0.807277 | 5.468502e-50 | -8.615850e-47 |
| Msa0166060 | Msa1443280 | 0.832631 | 8.468854e-56 | -8.615850e-47 |
| Msa0166060 | Msa1444750 | 0.831810 | 1.351482e-55 | -8.615850e-47 |
| Msa0166060 | Msa1455120 | 0.810392 | 1.179189e-50 | -8.615850e-47 |
| Msa0166060 | Msa1455560 | 0.829298 | 5.565633e-55 | -8.615850e-47 |
| Msa0166060 | Msa1456390 | 0.814327 | 1.630301e-51 | -8.615850e-47 |
| Msa0166060 | Msa1462700 | 0.800082 | 1.702548e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166060 | MtrunA17_Chr1g0180501 | 93.277 | 238 | 13 | 3 | 1 | 235 | 1 | 238 | 5.15e-148 | 412 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166060 | AT2G36885.1 | 86.957 | 161 | 21 | 0 | 74 | 234 | 95 | 255 | 1.25e-98 | 288 |
| Msa0166060 | AT2G36885.2 | 86.957 | 161 | 20 | 1 | 74 | 234 | 95 | 254 | 4.18e-97 | 284 |
Find 84 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGGTTATGGTACCTATC+TGG | 0.201420 | 1_4:+47050975 | Msa0166060:CDS |
| GCCTGACTGGCTTGTTCATT+GGG | 0.207637 | 1_4:+47050809 | Msa0166060:CDS |
| CTAAATTTACAACAATTAAA+TGG | 0.235242 | 1_4:+47057083 | Msa0166060:intron |
| CATGCCGTTACAGGCGTTAT+TGG | 0.237578 | 1_4:+47051652 | Msa0166060:CDS |
| TGCCTGACTGGCTTGTTCAT+TGG | 0.269853 | 1_4:+47050808 | Msa0166060:CDS |
| TTCTTTGCTCTTGGAGCTAC+TGG | 0.272209 | 1_4:+47051446 | Msa0166060:CDS |
| CTGCGCCAAGAGAGGAAATT+TGG | 0.284374 | 1_4:-47050519 | None:intergenic |
| TGGTGTTGATTCTATGGATT+GGG | 0.307901 | 1_4:-47050587 | None:intergenic |
| TACAGTCCTCATGCCGTTAC+AGG | 0.314786 | 1_4:+47051643 | Msa0166060:intron |
| GCTGCCCTTGGACTTCAATT+AGG | 0.329493 | 1_4:+47052376 | Msa0166060:CDS |
| GGGATGCAAGTCCTTGGCCT+TGG | 0.338833 | 1_4:-47051399 | None:intergenic |
| TCGCGCCAAATTTCCTCTCT+TGG | 0.359067 | 1_4:+47050514 | Msa0166060:CDS |
| CGCGAAGTATGAAATGAAAT+TGG | 0.363367 | 1_4:-47050496 | None:intergenic |
| CCATTCATTATTCTACGAAA+TGG | 0.368463 | 1_4:+47050426 | Msa0166060:exon |
| GATGGTCCTTTGATAAATTA+CGG | 0.370556 | 1_4:-47052696 | None:intergenic |
| TCTGTATCTAGTTGCGTTCA+CGG | 0.380800 | 1_4:-47052777 | None:intergenic |
| TATATTACCTTCACTGTTTG+AGG | 0.381332 | 1_4:+47051699 | Msa0166060:CDS |
| TGGACGGAGATTCATGATAA+TGG | 0.384959 | 1_4:-47050467 | None:intergenic |
| TTTCTTGTCCATGCTGCCCT+TGG | 0.385296 | 1_4:+47052364 | Msa0166060:CDS |
| TAAATATTTGTAGGAGGAAA+AGG | 0.386374 | 1_4:+47051376 | Msa0166060:intron |
| TTGGTGTTGATTCTATGGAT+TGG | 0.404513 | 1_4:-47050588 | None:intergenic |
| CTATGGATTGGGGTGAGTCT+TGG | 0.408490 | 1_4:-47050576 | None:intergenic |
| CCATGAACATTTCTTAATCC+AGG | 0.412779 | 1_4:-47052313 | None:intergenic |
| AAGAAATGTTCATGGCATCT+TGG | 0.414269 | 1_4:+47052321 | Msa0166060:CDS |
| GGTGGTTATGGTACCTATCT+GGG | 0.422512 | 1_4:+47050976 | Msa0166060:CDS |
| CCCCAATGAACAAGCCAGTC+AGG | 0.427002 | 1_4:-47050810 | None:intergenic |
| AAATTACGGATAATTCTCAT+TGG | 0.438433 | 1_4:-47052682 | None:intergenic |
| AATGATATGCAGGGAAATCC+TGG | 0.444461 | 1_4:+47052295 | Msa0166060:intron |
| ATTTAACTAACCATGTTGGC+AGG | 0.445888 | 1_4:-47050837 | None:intergenic |
| TTGGGGTGAGTCTTGGTTTG+TGG | 0.447264 | 1_4:-47050569 | None:intergenic |
| AGAAATGTTCATGGCATCTT+GGG | 0.463806 | 1_4:+47052322 | Msa0166060:CDS |
| AACATACCAGCTAATAGCTT+GGG | 0.466091 | 1_4:-47051419 | None:intergenic |
| GAAGCTGTATTTATGAACTA+AGG | 0.469918 | 1_4:-47052399 | None:intergenic |
| TCGAATGCGAAAACCCAGAT+AGG | 0.472079 | 1_4:-47050989 | None:intergenic |
| TGAAATGAAATTGGTGAAGA+TGG | 0.472785 | 1_4:-47050487 | None:intergenic |
| CCTGGATTAAGAAATGTTCA+TGG | 0.473102 | 1_4:+47052313 | Msa0166060:CDS |
| CCATTTCGTAGAATAATGAA+TGG | 0.475222 | 1_4:-47050426 | None:intergenic |
| ACAACATTAATAACTTGTAA+AGG | 0.475649 | 1_4:-47052804 | None:intergenic |
| TACGCCGCTGCTCTCTTACC+TGG | 0.482775 | 1_4:+47050655 | Msa0166060:CDS |
| AATTACGGATAATTCTCATT+GGG | 0.484475 | 1_4:-47052681 | None:intergenic |
| TTTGCTCTTGGAGCTACTGG+TGG | 0.495588 | 1_4:+47051449 | Msa0166060:CDS |
| AGTCGTTGAATCTGCCTGAC+TGG | 0.497666 | 1_4:+47050796 | Msa0166060:CDS |
| TGTGACATATATGCATTGTA+AGG | 0.509944 | 1_4:-47057188 | None:intergenic |
| AAACATACCAGCTAATAGCT+TGG | 0.513187 | 1_4:-47051420 | None:intergenic |
| TGGCGTGACATTTGAGGTGG+AGG | 0.520546 | 1_4:-47050549 | None:intergenic |
| TAGCTTGGGATGCAAGTCCT+TGG | 0.521656 | 1_4:-47051405 | None:intergenic |
| ACTACAATTGCTGGTTGACT+TGG | 0.525375 | 1_4:+47052619 | Msa0166060:three_prime_UTR |
| TCTATTGTTGTGACTTGTGA+TGG | 0.536724 | 1_4:-47050360 | None:intergenic |
| TTGCATCCCAAGCTATTAGC+TGG | 0.539795 | 1_4:+47051413 | Msa0166060:CDS |
| GGTTTGTGGCGTGACATTTG+AGG | 0.543470 | 1_4:-47050555 | None:intergenic |
| TAGTAAGATCAAGATGAGAG+TGG | 0.544672 | 1_4:-47050315 | None:intergenic |
| AAGATCAAGATGAGAGTGGA+AGG | 0.544984 | 1_4:-47050311 | None:intergenic |
| GTTGAAACCACGTGTAAAAG+TGG | 0.555349 | 1_4:+47050248 | Msa0166060:five_prime_UTR |
| TAAGGCCTAATTGAAGTCCA+AGG | 0.569878 | 1_4:-47052381 | None:intergenic |
| AATTATCCGTAATTTATCAA+AGG | 0.577881 | 1_4:+47052690 | Msa0166060:three_prime_UTR |
| GCGAGTTGCTGCGCCAAGAG+AGG | 0.579896 | 1_4:-47050527 | None:intergenic |
| GGAGGAAAAGGCCAAGGCCA+AGG | 0.580312 | 1_4:+47051388 | Msa0166060:intron |
| TTGGGGTCACCCTGCCAACA+TGG | 0.585713 | 1_4:+47050827 | Msa0166060:CDS |
| ATTTATTTAACTAACCATGT+TGG | 0.587938 | 1_4:-47050841 | None:intergenic |
| GGTGTTGATTCTATGGATTG+GGG | 0.590362 | 1_4:-47050586 | None:intergenic |
| AAGGCCAATAACGCCTGTAA+CGG | 0.591757 | 1_4:-47051656 | None:intergenic |
| CCTGACTGGCTTGTTCATTG+GGG | 0.592837 | 1_4:+47050810 | Msa0166060:CDS |
| AAATACAGCTTCAATTGATG+AGG | 0.597989 | 1_4:+47052410 | Msa0166060:exon |
| TAGCTGGTGTACCACATCAT+CGG | 0.598201 | 1_4:-47051016 | None:intergenic |
| ATAACTTTAATTATATAGTG+TGG | 0.598763 | 1_4:+47057156 | Msa0166060:three_prime_UTR |
| CATGGTATCAACGCTACAGA+TGG | 0.599896 | 1_4:-47052714 | None:intergenic |
| TTGTGGCGTGACATTTGAGG+TGG | 0.601719 | 1_4:-47050552 | None:intergenic |
| TTTAACTAACCATGTTGGCA+GGG | 0.602404 | 1_4:-47050836 | None:intergenic |
| ATTGAAGTCCAAGGGCAGCA+TGG | 0.606273 | 1_4:-47052372 | None:intergenic |
| ACCATTACCTCAAACAGTGA+AGG | 0.611894 | 1_4:-47051706 | None:intergenic |
| ATAACGCCTGTAACGGCATG+AGG | 0.613254 | 1_4:-47051649 | None:intergenic |
| GACTTGACTATCTCAACGAA+AGG | 0.613541 | 1_4:-47050777 | None:intergenic |
| TCTGTATTGTCAACAAAGCA+AGG | 0.616586 | 1_4:-47051675 | None:intergenic |
| TTTGTAGGAGGAAAAGGCCA+AGG | 0.623008 | 1_4:+47051382 | Msa0166060:intron |
| AAGGCCTAATTGAAGTCCAA+GGG | 0.629303 | 1_4:-47052380 | None:intergenic |
| ATGAAATTGGTGAAGATGGA+CGG | 0.635618 | 1_4:-47050483 | None:intergenic |
| CATTCGATATTCCGATGATG+TGG | 0.635671 | 1_4:+47051005 | Msa0166060:CDS |
| AGATCAAGATGAGAGTGGAA+GGG | 0.640373 | 1_4:-47050310 | None:intergenic |
| GCGGCGTAAAGTAAAGACAA+TGG | 0.650565 | 1_4:-47050640 | None:intergenic |
| AAGATGAGAGTGGAAGGGCG+AGG | 0.662994 | 1_4:-47050305 | None:intergenic |
| GAAACCACGTGTAAAAGTGG+AGG | 0.678749 | 1_4:+47050251 | Msa0166060:five_prime_UTR |
| GCCGCTGCTCTCTTACCTGG+AGG | 0.685113 | 1_4:+47050658 | Msa0166060:CDS |
| ACCTCCAGGTAAGAGAGCAG+CGG | 0.686187 | 1_4:-47050659 | None:intergenic |
| ACGGAGATTCATGATAATGG+AGG | 0.689473 | 1_4:-47050464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTCTTAAATTATAAT+TGG | + | chr1_4:47052019-47052038 | Msa0166060:intron | 10.0% |
| !!! | TTTATATGTTGATTATTATT+TGG | - | chr1_4:47052853-47052872 | None:intergenic | 10.0% |
| !! | ATTAATTATAATATTTGACT+TGG | - | chr1_4:47053519-47053538 | None:intergenic | 10.0% |
| !! | TGTAAAAATATATATTTATG+CGG | - | chr1_4:47054882-47054901 | None:intergenic | 10.0% |
| !!! | TTAAATCATATTTTAAATCA+AGG | + | chr1_4:47055177-47055196 | Msa0166060:intron | 10.0% |
| !!! | TTTATATGTTGATTATTATT+TGG | - | chr1_4:47052853-47052872 | None:intergenic | 10.0% |
| !! | ATTAATTATAATATTTGACT+TGG | - | chr1_4:47053519-47053538 | None:intergenic | 10.0% |
| !!! | TTTGAAATGAATTAGAATTA+AGG | - | chr1_4:47050702-47050721 | None:intergenic | 15.0% |
| !! | ATATCTTGTTAAATATTTGT+AGG | + | chr1_4:47051367-47051386 | Msa0166060:intron | 15.0% |
| !! | GAATTAACAAATTATCTAAT+AGG | - | chr1_4:47051580-47051599 | None:intergenic | 15.0% |
| !!! | ATTTTAGAGTTTTAATTAAC+AGG | + | chr1_4:47052487-47052506 | Msa0166060:intron | 15.0% |
| !! | GAATTATTTAAACAAAATGA+TGG | - | chr1_4:47052528-47052547 | None:intergenic | 15.0% |
| !! | TTTGTTTAAATAATTCAGAT+TGG | + | chr1_4:47052532-47052551 | Msa0166060:intron | 15.0% |
| !!! | TTTAAACTTTTGAAATATGT+GGG | - | chr1_4:47053652-47053671 | None:intergenic | 15.0% |
| !!! | TTTTAAACTTTTGAAATATG+TGG | - | chr1_4:47053653-47053672 | None:intergenic | 15.0% |
| !! | GTTTAAAAGAAATTAGAAAA+AGG | + | chr1_4:47053665-47053684 | Msa0166060:intron | 15.0% |
| !!! | AAATTCATTAAAAGCTTTAT+AGG | + | chr1_4:47054031-47054050 | Msa0166060:intron | 15.0% |
| !! | TATTTGTAGATTTATTATAC+AGG | + | chr1_4:47054501-47054520 | Msa0166060:intron | 15.0% |
| !!! | TACAAAACTTTATTTATTGT+GGG | - | chr1_4:47054557-47054576 | None:intergenic | 15.0% |
| !!! | AATTAATTATCTTTTCCAAT+GGG | - | chr1_4:47054795-47054814 | None:intergenic | 15.0% |
| !!! | AAATTAATTATCTTTTCCAA+TGG | - | chr1_4:47054796-47054815 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCAAATCTACT+TGG | + | chr1_4:47054813-47054832 | Msa0166060:intron | 15.0% |
| !! | AGGAAAAAAAAATGTATTAT+GGG | - | chr1_4:47054954-47054973 | None:intergenic | 15.0% |
| !! | AAGGAAAAAAAAATGTATTA+TGG | - | chr1_4:47054955-47054974 | None:intergenic | 15.0% |
| !!! | TTTTATTGAGAAAATTATGA+AGG | - | chr1_4:47054974-47054993 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTTGGAACAAA+TGG | - | chr1_4:47055899-47055918 | None:intergenic | 15.0% |
| !!! | ATCATGTTTATTTGAAATAT+TGG | - | chr1_4:47056112-47056131 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATTGACATTTAC+AGG | - | chr1_4:47056204-47056223 | None:intergenic | 15.0% |
| !!! | AATATTTTACAACAATCTTA+AGG | - | chr1_4:47056265-47056284 | None:intergenic | 15.0% |
| !! | CTAAATTTACAACAATTAAA+TGG | + | chr1_4:47057083-47057102 | Msa0166060:intron | 15.0% |
| !! | ATAACTTTAATTATATAGTG+TGG | + | chr1_4:47057156-47057175 | Msa0166060:three_prime_UTR | 15.0% |
| !! | ATTTATTTAACTAACCATGT+TGG | - | chr1_4:47050844-47050863 | None:intergenic | 20.0% |
| !!! | AGTTATTTACTTTTGTTTTG+TGG | - | chr1_4:47051134-47051153 | None:intergenic | 20.0% |
| !! | AATATAGAAGCAAACTTATA+TGG | + | chr1_4:47051268-47051287 | Msa0166060:intron | 20.0% |
| !! | GGTAAAATAATTAAACTTGA+TGG | + | chr1_4:47051289-47051308 | Msa0166060:intron | 20.0% |
| !! | TAACAAGATATGAAATACTT+GGG | - | chr1_4:47051358-47051377 | None:intergenic | 20.0% |
| !! | TTAACAAGATATGAAATACT+TGG | - | chr1_4:47051359-47051378 | None:intergenic | 20.0% |
| !!! | TTTTCCTATTTTTTAATCCA+TGG | + | chr1_4:47051761-47051780 | Msa0166060:intron | 20.0% |
| !! | ATTGAATATATAACCACATA+TGG | - | chr1_4:47051994-47052013 | None:intergenic | 20.0% |
| !!! | GAGGTTATTTATTTTAGTTA+TGG | + | chr1_4:47052429-47052448 | Msa0166060:intron | 20.0% |
| !!! | TAAAATGAAGTTTTAAGAAC+CGG | - | chr1_4:47052473-47052492 | None:intergenic | 20.0% |
| !! | AATTATCCGTAATTTATCAA+AGG | + | chr1_4:47052690-47052709 | Msa0166060:three_prime_UTR | 20.0% |
| !!! | TAATTTTGTGTTTGATTACA+TGG | - | chr1_4:47052735-47052754 | None:intergenic | 20.0% |
| !!! | ACAACATTAATAACTTGTAA+AGG | - | chr1_4:47052807-47052826 | None:intergenic | 20.0% |
| !! | CTATATATTATTGTATGACT+TGG | + | chr1_4:47052936-47052955 | Msa0166060:intron | 20.0% |
| !!! | TATCAAGAAGAAATATTTTC+AGG | + | chr1_4:47053139-47053158 | Msa0166060:intron | 20.0% |
| !!! | TCAGGAAAAACAATTTTTTT+TGG | - | chr1_4:47053276-47053295 | None:intergenic | 20.0% |
| !!! | CTCATTTGAAACAATAAATT+GGG | - | chr1_4:47053452-47053471 | None:intergenic | 20.0% |
| !!! | TCTCATTTGAAACAATAAAT+TGG | - | chr1_4:47053453-47053472 | None:intergenic | 20.0% |
| !!! | TTAAACTTTTGAAATATGTG+GGG | - | chr1_4:47053651-47053670 | None:intergenic | 20.0% |
| !! | TGTTAAGTATTATCATTCTA+GGG | - | chr1_4:47053754-47053773 | None:intergenic | 20.0% |
| !! | ATTCGAAATTAATAAGTGAT+GGG | - | chr1_4:47054224-47054243 | None:intergenic | 20.0% |
| !!! | GTACAAAACTTTATTTATTG+TGG | - | chr1_4:47054558-47054577 | None:intergenic | 20.0% |
| !! | AAATATAACTACTCTATATG+TGG | + | chr1_4:47054722-47054741 | Msa0166060:intron | 20.0% |
| !!! | ATTAATTATCTTTTCCAATG+GGG | - | chr1_4:47054794-47054813 | None:intergenic | 20.0% |
| !! | GTTGAATAAAATTTAGAAAG+AGG | - | chr1_4:47055137-47055156 | None:intergenic | 20.0% |
| !! | TAGTAGTTGTTTATAATGAT+TGG | - | chr1_4:47055469-47055488 | None:intergenic | 20.0% |
| !!! | CTAAGTACTTTTTTATCTTT+TGG | - | chr1_4:47055579-47055598 | None:intergenic | 20.0% |
| !!! | TTTTAAACAAATTTGCATTG+TGG | - | chr1_4:47055661-47055680 | None:intergenic | 20.0% |
| !!! | AGAATAGTTTAAAACTTACA+AGG | + | chr1_4:47055832-47055851 | Msa0166060:intron | 20.0% |
| !! | CTATATATTATTGTATGACT+TGG | + | chr1_4:47052936-47052955 | Msa0166060:intron | 20.0% |
| !!! | TATCAAGAAGAAATATTTTC+AGG | + | chr1_4:47053139-47053158 | Msa0166060:intron | 20.0% |
| !!! | TCAGGAAAAACAATTTTTTT+TGG | - | chr1_4:47053276-47053295 | None:intergenic | 20.0% |
| !!! | CTCATTTGAAACAATAAATT+GGG | - | chr1_4:47053452-47053471 | None:intergenic | 20.0% |
| !!! | TCTCATTTGAAACAATAAAT+TGG | - | chr1_4:47053453-47053472 | None:intergenic | 20.0% |
| !!! | TGTAAGATTGTTTCACTTTT+TGG | - | chr1_4:47050610-47050629 | None:intergenic | 25.0% |
| ! | ACTAAACTAAACTAAACAGA+TGG | + | chr1_4:47050732-47050751 | Msa0166060:intron | 25.0% |
| ! | TGATTAATAATCAAAGTAGC+TGG | - | chr1_4:47051035-47051054 | None:intergenic | 25.0% |
| !! | TTCTCTTTTAGTACTCTTTT+GGG | + | chr1_4:47051203-47051222 | Msa0166060:intron | 25.0% |
| ! | TCTTGTTAAATATTTGTAGG+AGG | + | chr1_4:47051370-47051389 | Msa0166060:intron | 25.0% |
| ! | TAAATATTTGTAGGAGGAAA+AGG | + | chr1_4:47051376-47051395 | Msa0166060:intron | 25.0% |
| ! | TGTAAATACCTGTCAAAAAT+GGG | - | chr1_4:47051503-47051522 | None:intergenic | 25.0% |
| ! | ATGTAAATACCTGTCAAAAA+TGG | - | chr1_4:47051504-47051523 | None:intergenic | 25.0% |
| ! | ATTAACAAGCAATAATCTTC+AGG | - | chr1_4:47051545-47051564 | None:intergenic | 25.0% |
| ! | ATAAAAACAAGTTAGCTCAA+AGG | - | chr1_4:47051737-47051756 | None:intergenic | 25.0% |
| !! | GATTCCATGGATTAAAAAAT+AGG | - | chr1_4:47051768-47051787 | None:intergenic | 25.0% |
| ! | GATAAATGAGTATCTATCTA+TGG | - | chr1_4:47051810-47051829 | None:intergenic | 25.0% |
| ! | ACACTTTCAATATAAAGTGT+TGG | - | chr1_4:47051925-47051944 | None:intergenic | 25.0% |
| ! | AATTACGGATAATTCTCATT+GGG | - | chr1_4:47052684-47052703 | None:intergenic | 25.0% |
| ! | AAATTACGGATAATTCTCAT+TGG | - | chr1_4:47052685-47052704 | None:intergenic | 25.0% |
| ! | AAACCAACATAATAGTAAAC+CGG | + | chr1_4:47053002-47053021 | Msa0166060:intron | 25.0% |
| ! | TTGAAGCATAAAAAGTAAAG+AGG | + | chr1_4:47053216-47053235 | Msa0166060:intron | 25.0% |
| ! | TGAAGCATAAAAAGTAAAGA+GGG | + | chr1_4:47053217-47053236 | Msa0166060:intron | 25.0% |
| !!! | GTTCTATTACTTTTAAGATC+AGG | - | chr1_4:47053294-47053313 | None:intergenic | 25.0% |
| !!! | TTAGCTTTTTGAGCATAAAT+AGG | + | chr1_4:47053339-47053358 | Msa0166060:intron | 25.0% |
| !!! | TAAACTTTTGAAATATGTGG+GGG | - | chr1_4:47053650-47053669 | None:intergenic | 25.0% |
| ! | AAATTAGAAAAAGGACTTTC+TGG | + | chr1_4:47053674-47053693 | Msa0166060:intron | 25.0% |
| ! | AATTAGAAAAAGGACTTTCT+GGG | + | chr1_4:47053675-47053694 | Msa0166060:intron | 25.0% |
| ! | GTGTTAAGTATTATCATTCT+AGG | - | chr1_4:47053755-47053774 | None:intergenic | 25.0% |
| ! | ATGAATTTCATATCCCTTAT+GGG | - | chr1_4:47054019-47054038 | None:intergenic | 25.0% |
| ! | AATGAATTTCATATCCCTTA+TGG | - | chr1_4:47054020-47054039 | None:intergenic | 25.0% |
| ! | CATTCGAAATTAATAAGTGA+TGG | - | chr1_4:47054225-47054244 | None:intergenic | 25.0% |
| ! | CATCACTTATTAATTTCGAA+TGG | + | chr1_4:47054223-47054242 | Msa0166060:intron | 25.0% |
| ! | ACAAATTTATTTCATCCCAA+GGG | + | chr1_4:47054272-47054291 | Msa0166060:intron | 25.0% |
| !!! | ATTGCATTATTTTGATGCAA+TGG | + | chr1_4:47054620-47054639 | Msa0166060:intron | 25.0% |
| !! | TAGTTATATTTTCCCAATGT+GGG | - | chr1_4:47054713-47054732 | None:intergenic | 25.0% |
| ! | TATATGTGGATTTATTACTC+AGG | + | chr1_4:47054736-47054755 | Msa0166060:intron | 25.0% |
| !! | TTAATTATCTTTTCCAATGG+GGG | - | chr1_4:47054793-47054812 | None:intergenic | 25.0% |
| ! | ATTGTATTGTTCTAGTACAA+TGG | + | chr1_4:47054924-47054943 | Msa0166060:intron | 25.0% |
| !!! | TCTACGAATTGATTTTGATT+GGG | - | chr1_4:47055096-47055115 | None:intergenic | 25.0% |
| ! | CACTCTATGATACAAAAAAA+TGG | + | chr1_4:47055242-47055261 | Msa0166060:intron | 25.0% |
| ! | AGTTAATGATTGCTAACTTA+TGG | - | chr1_4:47055299-47055318 | None:intergenic | 25.0% |
| !! | AACCTTTGATTTAAAGAGAA+TGG | - | chr1_4:47056049-47056068 | None:intergenic | 25.0% |
| ! | AAACCAACATAATAGTAAAC+CGG | + | chr1_4:47053002-47053021 | Msa0166060:intron | 25.0% |
| ! | TTGAAGCATAAAAAGTAAAG+AGG | + | chr1_4:47053216-47053235 | Msa0166060:intron | 25.0% |
| ! | TGAAGCATAAAAAGTAAAGA+GGG | + | chr1_4:47053217-47053236 | Msa0166060:intron | 25.0% |
| !!! | GTTCTATTACTTTTAAGATC+AGG | - | chr1_4:47053294-47053313 | None:intergenic | 25.0% |
| !!! | TTAGCTTTTTGAGCATAAAT+AGG | + | chr1_4:47053339-47053358 | Msa0166060:intron | 25.0% |
| !!! | ACATGGTATTTATTTTGCAA+CGG | - | chr1_4:47056879-47056898 | None:intergenic | 25.0% |
| CCATTTCGTAGAATAATGAA+TGG | - | chr1_4:47050429-47050448 | None:intergenic | 30.0% | |
| CCATTCATTATTCTACGAAA+TGG | + | chr1_4:47050426-47050445 | Msa0166060:exon | 30.0% | |
| TGAAATGAAATTGGTGAAGA+TGG | - | chr1_4:47050490-47050509 | None:intergenic | 30.0% | |
| !!! | ACTTTTTGGTGTTGATTCTA+TGG | - | chr1_4:47050596-47050615 | None:intergenic | 30.0% |
| ACACAGAAGCTATATAAGAA+AGG | - | chr1_4:47051074-47051093 | None:intergenic | 30.0% | |
| ! | GTTCTCTTTTAGTACTCTTT+TGG | + | chr1_4:47051202-47051221 | Msa0166060:intron | 30.0% |
| ! | ATGTTTTTCTTCTTTGCTCT+TGG | + | chr1_4:47051437-47051456 | Msa0166060:CDS | 30.0% |
| TATATTACCTTCACTGTTTG+AGG | + | chr1_4:47051699-47051718 | Msa0166060:CDS | 30.0% | |
| TAAACCAACATGTTGAACAT+TGG | - | chr1_4:47051950-47051969 | None:intergenic | 30.0% | |
| !! | ATGTTCAACATGTTGGTTTA+TGG | + | chr1_4:47051950-47051969 | Msa0166060:intron | 30.0% |
| GAATATATAACCACATATGG+TGG | - | chr1_4:47051991-47052010 | None:intergenic | 30.0% | |
| TGGTAACAAATTCAATGATG+AGG | - | chr1_4:47052246-47052265 | None:intergenic | 30.0% | |
| GAAGCTGTATTTATGAACTA+AGG | - | chr1_4:47052402-47052421 | None:intergenic | 30.0% | |
| AAATACAGCTTCAATTGATG+AGG | + | chr1_4:47052410-47052429 | Msa0166060:exon | 30.0% | |
| !! | GATTTTAGTACTACAATTGC+TGG | + | chr1_4:47052610-47052629 | Msa0166060:three_prime_UTR | 30.0% |
| GATGGTCCTTTGATAAATTA+CGG | - | chr1_4:47052699-47052718 | None:intergenic | 30.0% | |
| ! | GTTGGTTTCATATGAATTGT+CGG | - | chr1_4:47052990-47053009 | None:intergenic | 30.0% |
| !! | ATACCGGTTTACTATTATGT+TGG | - | chr1_4:47053008-47053027 | None:intergenic | 30.0% |
| !! | CAAGAAGAAATATTTTCAGG+AGG | + | chr1_4:47053142-47053161 | Msa0166060:intron | 30.0% |
| TGAGTCTGACATATAATTCT+GGG | - | chr1_4:47053174-47053193 | None:intergenic | 30.0% | |
| ATGAGTCTGACATATAATTC+TGG | - | chr1_4:47053175-47053194 | None:intergenic | 30.0% | |
| CGTAAACTCCATATGTAAAT+TGG | + | chr1_4:47053313-47053332 | Msa0166060:intron | 30.0% | |
| !!! | CACTGGTATTTATTTTGCAA+CGG | - | chr1_4:47053429-47053448 | None:intergenic | 30.0% |
| TTAATCCAGTCAAAATGATG+TGG | + | chr1_4:47053479-47053498 | Msa0166060:intron | 30.0% | |
| CTATATGAACCAAAATCACT+TGG | + | chr1_4:47053797-47053816 | Msa0166060:intron | 30.0% | |
| AATAAATTTGTGTGCATCGA+GGG | - | chr1_4:47054263-47054282 | None:intergenic | 30.0% | |
| AAATAAATTTGTGTGCATCG+AGG | - | chr1_4:47054264-47054283 | None:intergenic | 30.0% | |
| CACAAATTTATTTCATCCCA+AGG | + | chr1_4:47054271-47054290 | Msa0166060:intron | 30.0% | |
| CAAATTTATTTCATCCCAAG+GGG | + | chr1_4:47054273-47054292 | Msa0166060:intron | 30.0% | |
| ! | AGTTATATTTTCCCAATGTG+GGG | - | chr1_4:47054712-47054731 | None:intergenic | 30.0% |
| ! | GTAGTTATATTTTCCCAATG+TGG | - | chr1_4:47054714-47054733 | None:intergenic | 30.0% |
| ! | TAATTATCTTTTCCAATGGG+GGG | - | chr1_4:47054792-47054811 | None:intergenic | 30.0% |
| TTTATACACATGTGAAGAAG+TGG | + | chr1_4:47055043-47055062 | Msa0166060:intron | 30.0% | |
| !! | CTCTACGAATTGATTTTGAT+TGG | - | chr1_4:47055097-47055116 | None:intergenic | 30.0% |
| AGGATTTGATCTAACATGTT+TGG | - | chr1_4:47055212-47055231 | None:intergenic | 30.0% | |
| ! | TCATAGAGTGTTATTCTTTG+AGG | - | chr1_4:47055232-47055251 | None:intergenic | 30.0% |
| ! | GTTGCATGTTTTCATATTAG+CGG | - | chr1_4:47055277-47055296 | None:intergenic | 30.0% |
| AGTGAAACATAGTCAACATT+CGG | + | chr1_4:47055543-47055562 | Msa0166060:intron | 30.0% | |
| AGTACTTAGCATATATAGCA+TGG | + | chr1_4:47055590-47055609 | Msa0166060:intron | 30.0% | |
| ! | TGTCATTTATCCATAGAATG+CGG | - | chr1_4:47055697-47055716 | None:intergenic | 30.0% |
| TCAGCACAATATCAAAACTT+AGG | + | chr1_4:47055758-47055777 | Msa0166060:intron | 30.0% | |
| TCAAAACTTAGGAGGTTTAA+AGG | + | chr1_4:47055769-47055788 | Msa0166060:intron | 30.0% | |
| TTAAAATCATCTCTTGAGCA+TGG | - | chr1_4:47055872-47055891 | None:intergenic | 30.0% | |
| CACCATTCTCTTTAAATCAA+AGG | + | chr1_4:47056044-47056063 | Msa0166060:intron | 30.0% | |
| ! | GTTGGTTTCATATGAATTGT+CGG | - | chr1_4:47052990-47053009 | None:intergenic | 30.0% |
| !! | ATACCGGTTTACTATTATGT+TGG | - | chr1_4:47053008-47053027 | None:intergenic | 30.0% |
| !! | CAAGAAGAAATATTTTCAGG+AGG | + | chr1_4:47053142-47053161 | Msa0166060:intron | 30.0% |
| TGAGTCTGACATATAATTCT+GGG | - | chr1_4:47053174-47053193 | None:intergenic | 30.0% | |
| ATGAGTCTGACATATAATTC+TGG | - | chr1_4:47053175-47053194 | None:intergenic | 30.0% | |
| CGTAAACTCCATATGTAAAT+TGG | + | chr1_4:47053313-47053332 | Msa0166060:intron | 30.0% | |
| TTAATCCAGTCAAAATGATG+TGG | + | chr1_4:47053479-47053498 | Msa0166060:intron | 30.0% | |
| TGTGACATATATGCATTGTA+AGG | - | chr1_4:47057191-47057210 | None:intergenic | 30.0% | |
| TAGTAAGATCAAGATGAGAG+TGG | - | chr1_4:47050318-47050337 | None:intergenic | 35.0% | |
| ! | TCTATTGTTGTGACTTGTGA+TGG | - | chr1_4:47050363-47050382 | None:intergenic | 35.0% |
| ATGAAATTGGTGAAGATGGA+CGG | - | chr1_4:47050486-47050505 | None:intergenic | 35.0% | |
| CGCGAAGTATGAAATGAAAT+TGG | - | chr1_4:47050499-47050518 | None:intergenic | 35.0% | |
| !! | TGGTGTTGATTCTATGGATT+GGG | - | chr1_4:47050590-47050609 | None:intergenic | 35.0% |
| !! | TTGGTGTTGATTCTATGGAT+TGG | - | chr1_4:47050591-47050610 | None:intergenic | 35.0% |
| GAATTGTAAAATGTACCTCC+AGG | - | chr1_4:47050676-47050695 | None:intergenic | 35.0% | |
| TTTAACTAACCATGTTGGCA+GGG | - | chr1_4:47050839-47050858 | None:intergenic | 35.0% | |
| ATTTAACTAACCATGTTGGC+AGG | - | chr1_4:47050840-47050859 | None:intergenic | 35.0% | |
| AACATACCAGCTAATAGCTT+GGG | - | chr1_4:47051422-47051441 | None:intergenic | 35.0% | |
| AAACATACCAGCTAATAGCT+TGG | - | chr1_4:47051423-47051442 | None:intergenic | 35.0% | |
| !! | CAGATAAACCCATTTTTGAC+AGG | + | chr1_4:47051492-47051511 | Msa0166060:CDS | 35.0% |
| TCTGTATTGTCAACAAAGCA+AGG | - | chr1_4:47051678-47051697 | None:intergenic | 35.0% | |
| !! | AACACTGATTCAAGATTCCA+TGG | - | chr1_4:47051781-47051800 | None:intergenic | 35.0% |
| ATGAGTATCTATCTATGGTC+AGG | - | chr1_4:47051805-47051824 | None:intergenic | 35.0% | |
| CATGGAGACAATAATTGCAT+TGG | - | chr1_4:47052055-47052074 | None:intergenic | 35.0% | |
| ATTCAATGATGAGGAAAGAG+TGG | - | chr1_4:47052237-47052256 | None:intergenic | 35.0% | |
| ATTCAGGTAACTGAAAGTGA+GGG | - | chr1_4:47052278-47052297 | None:intergenic | 35.0% | |
| AGTTACCTGAATGATATGCA+GGG | + | chr1_4:47052286-47052305 | Msa0166060:intron | 35.0% | |
| CCATGAACATTTCTTAATCC+AGG | - | chr1_4:47052316-47052335 | None:intergenic | 35.0% | |
| CCTGGATTAAGAAATGTTCA+TGG | + | chr1_4:47052313-47052332 | Msa0166060:CDS | 35.0% | |
| AAGAAATGTTCATGGCATCT+TGG | + | chr1_4:47052321-47052340 | Msa0166060:CDS | 35.0% | |
| AGAAATGTTCATGGCATCTT+GGG | + | chr1_4:47052322-47052341 | Msa0166060:CDS | 35.0% | |
| CACGGTTCAAAAACTGTAAT+TGG | - | chr1_4:47052762-47052781 | None:intergenic | 35.0% | |
| ! | GATATTTGGAACTGTGTTGA+TGG | - | chr1_4:47052962-47052981 | None:intergenic | 35.0% |
| GCTAACTGCCAATTTACATA+TGG | - | chr1_4:47053324-47053343 | None:intergenic | 35.0% | |
| TGAAACAATAAATTGGGCAC+TGG | - | chr1_4:47053446-47053465 | None:intergenic | 35.0% | |
| !! | TTTAGCCACATCATTTTGAC+TGG | - | chr1_4:47053487-47053506 | None:intergenic | 35.0% |
| !! | AAGTATTATCATTCTAGGGC+TGG | - | chr1_4:47053750-47053769 | None:intergenic | 35.0% |
| TACTTAACACACAGTGAAGT+TGG | + | chr1_4:47053765-47053784 | Msa0166060:intron | 35.0% | |
| ! | TAACATACGCCAAGTGATTT+TGG | - | chr1_4:47053809-47053828 | None:intergenic | 35.0% |
| AAATCATACACCACCCATAA+GGG | + | chr1_4:47054003-47054022 | Msa0166060:intron | 35.0% | |
| AATTTCATATCCCTTATGGG+TGG | - | chr1_4:47054016-47054035 | None:intergenic | 35.0% | |
| ACCCATATGAACCTTATTCA+TGG | + | chr1_4:47054173-47054192 | Msa0166060:intron | 35.0% | |
| CCCATGAATAAGGTTCATAT+GGG | - | chr1_4:47054177-47054196 | None:intergenic | 35.0% | |
| CCCATATGAACCTTATTCAT+GGG | + | chr1_4:47054174-47054193 | Msa0166060:intron | 35.0% | |
| TCCCATGAATAAGGTTCATA+TGG | - | chr1_4:47054178-47054197 | None:intergenic | 35.0% | |
| ATAAATTTGTGTGCATCGAG+GGG | - | chr1_4:47054262-47054281 | None:intergenic | 35.0% | |
| CATCCTTGATATACTTCATC+AGG | + | chr1_4:47054657-47054676 | Msa0166060:intron | 35.0% | |
| AGACCTGATGAAGTATATCA+AGG | - | chr1_4:47054663-47054682 | None:intergenic | 35.0% | |
| ! | GTTATATTTTCCCAATGTGG+GGG | - | chr1_4:47054711-47054730 | None:intergenic | 35.0% |
| ATTGTGAGTGCATTATCACA+TGG | - | chr1_4:47054846-47054865 | None:intergenic | 35.0% | |
| ! | ATGTGATAATGCACTCACAA+TGG | + | chr1_4:47054845-47054864 | Msa0166060:intron | 35.0% |
| ! | TGTGATAATGCACTCACAAT+GGG | + | chr1_4:47054846-47054865 | Msa0166060:intron | 35.0% |
| ACTTATATGCTAGAGTCAGT+AGG | - | chr1_4:47055350-47055369 | None:intergenic | 35.0% | |
| TGACTCTAGCATATAAGTCA+CGG | + | chr1_4:47055352-47055371 | Msa0166060:intron | 35.0% | |
| !! | AATATGTTGGTTTGGCATGA+GGG | - | chr1_4:47055440-47055459 | None:intergenic | 35.0% |
| !! | TAATATGTTGGTTTGGCATG+AGG | - | chr1_4:47055441-47055460 | None:intergenic | 35.0% |
| TGATTGGTGAGCTAATATGT+TGG | - | chr1_4:47055453-47055472 | None:intergenic | 35.0% | |
| CAGACTGCACTTAAATTTCA+AGG | + | chr1_4:47055501-47055520 | Msa0166060:intron | 35.0% | |
| ! | GAATGTTGACTATGTTTCAC+TGG | - | chr1_4:47055544-47055563 | None:intergenic | 35.0% |
| TATAGCATGGATCTACATTG+CGG | + | chr1_4:47055603-47055622 | Msa0166060:intron | 35.0% | |
| GCACAATATCAAAACTTAGG+AGG | + | chr1_4:47055761-47055780 | Msa0166060:intron | 35.0% | |
| GATTCTTGAATCAGAGGTAA+CGG | + | chr1_4:47055943-47055962 | Msa0166060:intron | 35.0% | |
| ! | GATATTTGGAACTGTGTTGA+TGG | - | chr1_4:47052962-47052981 | None:intergenic | 35.0% |
| GCTAACTGCCAATTTACATA+TGG | - | chr1_4:47053324-47053343 | None:intergenic | 35.0% | |
| GAAACAATAAATTGGGCACA+TGG | - | chr1_4:47056896-47056915 | None:intergenic | 35.0% | |
| !! | TTTAGCCACATCATTTTGAC+TGG | - | chr1_4:47053487-47053506 | None:intergenic | 35.0% |
| GTTGAAACCACGTGTAAAAG+TGG | + | chr1_4:47050248-47050267 | Msa0166060:five_prime_UTR | 40.0% | |
| AGATCAAGATGAGAGTGGAA+GGG | - | chr1_4:47050313-47050332 | None:intergenic | 40.0% | |
| AAGATCAAGATGAGAGTGGA+AGG | - | chr1_4:47050314-47050333 | None:intergenic | 40.0% | |
| !! | ACGGAGATTCATGATAATGG+AGG | - | chr1_4:47050467-47050486 | None:intergenic | 40.0% |
| TGGACGGAGATTCATGATAA+TGG | - | chr1_4:47050470-47050489 | None:intergenic | 40.0% | |
| !! | GGTGTTGATTCTATGGATTG+GGG | - | chr1_4:47050589-47050608 | None:intergenic | 40.0% |
| GACTTGACTATCTCAACGAA+AGG | - | chr1_4:47050780-47050799 | None:intergenic | 40.0% | |
| ACATGATGAATTGCTCTTGC+AGG | + | chr1_4:47050933-47050952 | Msa0166060:intron | 40.0% | |
| !! | CTTTTTGCTATGGGTGGTTA+TGG | + | chr1_4:47050964-47050983 | Msa0166060:CDS | 40.0% |
| CATTCGATATTCCGATGATG+TGG | + | chr1_4:47051005-47051024 | Msa0166060:CDS | 40.0% | |
| ! | ACCTTCACTGTTTGAGGTAA+TGG | + | chr1_4:47051705-47051724 | Msa0166060:intron | 40.0% |
| ACCATTACCTCAAACAGTGA+AGG | - | chr1_4:47051709-47051728 | None:intergenic | 40.0% | |
| GTGTCCAATGTTCAACATGT+TGG | + | chr1_4:47051943-47051962 | Msa0166060:intron | 40.0% | |
| TCCTTGTGCAAATAGTTGCA+GGG | + | chr1_4:47052104-47052123 | Msa0166060:intron | 40.0% | |
| AGCTGATGCACAAGTTACTT+TGG | - | chr1_4:47052172-47052191 | None:intergenic | 40.0% | |
| TTCAGGTAACTGAAAGTGAG+GGG | - | chr1_4:47052277-47052296 | None:intergenic | 40.0% | |
| CATTCAGGTAACTGAAAGTG+AGG | - | chr1_4:47052279-47052298 | None:intergenic | 40.0% | |
| CAGTTACCTGAATGATATGC+AGG | + | chr1_4:47052285-47052304 | Msa0166060:intron | 40.0% | |
| GATTTCCCTGCATATCATTC+AGG | - | chr1_4:47052294-47052313 | None:intergenic | 40.0% | |
| AATGATATGCAGGGAAATCC+TGG | + | chr1_4:47052295-47052314 | Msa0166060:intron | 40.0% | |
| AAGGCCTAATTGAAGTCCAA+GGG | - | chr1_4:47052383-47052402 | None:intergenic | 40.0% | |
| TAAGGCCTAATTGAAGTCCA+AGG | - | chr1_4:47052384-47052403 | None:intergenic | 40.0% | |
| !!! | TGAAGTTTTAAGAACCGGTG+CGG | - | chr1_4:47052468-47052487 | None:intergenic | 40.0% |
| !!! | ACTACTCCAGCTTTTTCACA+TGG | + | chr1_4:47052567-47052586 | Msa0166060:three_prime_UTR | 40.0% |
| CTGTTTCCATGTGAAAAAGC+TGG | - | chr1_4:47052576-47052595 | None:intergenic | 40.0% | |
| !!! | CAGCTTTTTCACATGGAAAC+AGG | + | chr1_4:47052574-47052593 | Msa0166060:three_prime_UTR | 40.0% |
| ! | ACTACAATTGCTGGTTGACT+TGG | + | chr1_4:47052619-47052638 | Msa0166060:three_prime_UTR | 40.0% |
| TCTGTATCTAGTTGCGTTCA+CGG | - | chr1_4:47052780-47052799 | None:intergenic | 40.0% | |
| AATTGTCGGTGGAGGATATT+TGG | - | chr1_4:47052976-47052995 | None:intergenic | 40.0% | |
| TTCATATGAATTGTCGGTGG+AGG | - | chr1_4:47052984-47053003 | None:intergenic | 40.0% | |
| GGTTTCATATGAATTGTCGG+TGG | - | chr1_4:47052987-47053006 | None:intergenic | 40.0% | |
| GTAAACCGGTATATATCCTG+AGG | + | chr1_4:47053016-47053035 | Msa0166060:intron | 40.0% | |
| ATGAGGCGGATAAATCCTTA+AGG | - | chr1_4:47053059-47053078 | None:intergenic | 40.0% | |
| CTCTTCTTGGATTGAAACCA+AGG | + | chr1_4:47053107-47053126 | Msa0166060:intron | 40.0% | |
| ! | TCTTGATAGTTCTGCATCCT+TGG | - | chr1_4:47053127-47053146 | None:intergenic | 40.0% |
| !! | CAGTTTTATGCATCACATCC+AGG | - | chr1_4:47053708-47053727 | None:intergenic | 40.0% |
| CTGGATGTGATGCATAAAAC+TGG | + | chr1_4:47053706-47053725 | Msa0166060:intron | 40.0% | |
| AATCACTTGGCGTATGTTAG+CGG | + | chr1_4:47053810-47053829 | Msa0166060:intron | 40.0% | |
| GAGCACTCATGAAATAATCC+AGG | - | chr1_4:47053907-47053926 | None:intergenic | 40.0% | |
| CAAATCATACACCACCCATA+AGG | + | chr1_4:47054002-47054021 | Msa0166060:intron | 40.0% | |
| CTAGACACTGCATTATTGAG+AGG | - | chr1_4:47054062-47054081 | None:intergenic | 40.0% | |
| TTGTTCTTGTCCCTTTCCTA+TGG | - | chr1_4:47054100-47054119 | None:intergenic | 40.0% | |
| GATTGGAGATCCCATGAATA+AGG | - | chr1_4:47054187-47054206 | None:intergenic | 40.0% | |
| GATCTCCAATCACAAAGGTT+GGG | + | chr1_4:47054196-47054215 | Msa0166060:intron | 40.0% | |
| AAGCGACATCACTATCAATG+TGG | + | chr1_4:47054465-47054484 | Msa0166060:intron | 40.0% | |
| ! | GTGATAATGCACTCACAATG+GGG | + | chr1_4:47054847-47054866 | Msa0166060:intron | 40.0% |
| ! | GGTGAGCTAATATGTTGGTT+TGG | - | chr1_4:47055448-47055467 | None:intergenic | 40.0% |
| CATTTATCCATAGAATGCGG+AGG | - | chr1_4:47055694-47055713 | None:intergenic | 40.0% | |
| AATATGTACCAGATCCCTTG+TGG | + | chr1_4:47055796-47055815 | Msa0166060:intron | 40.0% | |
| ATCCCTTGTGGATGATTTCA+AGG | + | chr1_4:47055808-47055827 | Msa0166060:intron | 40.0% | |
| TCCCTTGTGGATGATTTCAA+GGG | + | chr1_4:47055809-47055828 | Msa0166060:intron | 40.0% | |
| TCCCTTGAAATCATCCACAA+GGG | - | chr1_4:47055813-47055832 | None:intergenic | 40.0% | |
| GCATCAGATTCTTGAATCAG+AGG | + | chr1_4:47055937-47055956 | Msa0166060:intron | 40.0% | |
| AGAGTTTCATACTCCATGTC+TGG | + | chr1_4:47055985-47056004 | Msa0166060:intron | 40.0% | |
| CTCGATATGTTATCCAGACA+TGG | - | chr1_4:47056001-47056020 | None:intergenic | 40.0% | |
| AATTGTCGGTGGAGGATATT+TGG | - | chr1_4:47052976-47052995 | None:intergenic | 40.0% | |
| TTCATATGAATTGTCGGTGG+AGG | - | chr1_4:47052984-47053003 | None:intergenic | 40.0% | |
| GGTTTCATATGAATTGTCGG+TGG | - | chr1_4:47052987-47053006 | None:intergenic | 40.0% | |
| GTAAACCGGTATATAACCTG+AGG | + | chr1_4:47056466-47056485 | Msa0166060:intron | 40.0% | |
| ATGAGGCGGATAAATCCTTA+AGG | - | chr1_4:47053059-47053078 | None:intergenic | 40.0% | |
| CTCTTCTTGGATTGAAACCA+AGG | + | chr1_4:47053107-47053126 | Msa0166060:intron | 40.0% | |
| ! | TCTTGATAGTTCTGCATCCT+TGG | - | chr1_4:47053127-47053146 | None:intergenic | 40.0% |
| GAAACCACGTGTAAAAGTGG+AGG | + | chr1_4:47050251-47050270 | Msa0166060:five_prime_UTR | 45.0% | |
| GCGGCGTAAAGTAAAGACAA+TGG | - | chr1_4:47050643-47050662 | None:intergenic | 45.0% | |
| !! | GCAGTGGTGCTTTTTGCTAT+GGG | + | chr1_4:47050955-47050974 | Msa0166060:CDS | 45.0% |
| GGTGGTTATGGTACCTATCT+GGG | + | chr1_4:47050976-47050995 | Msa0166060:CDS | 45.0% | |
| TCGAATGCGAAAACCCAGAT+AGG | - | chr1_4:47050992-47051011 | None:intergenic | 45.0% | |
| TAGCTGGTGTACCACATCAT+CGG | - | chr1_4:47051019-47051038 | None:intergenic | 45.0% | |
| TTTGTAGGAGGAAAAGGCCA+AGG | + | chr1_4:47051382-47051401 | Msa0166060:intron | 45.0% | |
| TTGCATCCCAAGCTATTAGC+TGG | + | chr1_4:47051413-47051432 | Msa0166060:CDS | 45.0% | |
| TTCTTTGCTCTTGGAGCTAC+TGG | + | chr1_4:47051446-47051465 | Msa0166060:CDS | 45.0% | |
| AAGGCCAATAACGCCTGTAA+CGG | - | chr1_4:47051659-47051678 | None:intergenic | 45.0% | |
| TATTGTCTCCATGTCTGCGT+CGG | + | chr1_4:47052062-47052081 | Msa0166060:intron | 45.0% | |
| GTCCTTGTGCAAATAGTTGC+AGG | + | chr1_4:47052103-47052122 | Msa0166060:intron | 45.0% | |
| ACCCTGCAACTATTTGCACA+AGG | - | chr1_4:47052108-47052127 | None:intergenic | 45.0% | |
| TCAGGTAACTGAAAGTGAGG+GGG | - | chr1_4:47052276-47052295 | None:intergenic | 45.0% | |
| GTGTATATTCTTTCCCGCAC+CGG | + | chr1_4:47052451-47052470 | Msa0166060:intron | 45.0% | |
| !!! | GAAGTTTTAAGAACCGGTGC+GGG | - | chr1_4:47052467-47052486 | None:intergenic | 45.0% |
| CATGGTATCAACGCTACAGA+TGG | - | chr1_4:47052717-47052736 | None:intergenic | 45.0% | |
| GACTTTCTGGGTTAACATCC+TGG | + | chr1_4:47053687-47053706 | Msa0166060:intron | 45.0% | |
| TGAGATCTTGGCGAAATCTC+TGG | - | chr1_4:47053929-47053948 | None:intergenic | 45.0% | |
| TCGCCAAGATCTCATACAAG+CGG | + | chr1_4:47053935-47053954 | Msa0166060:intron | 45.0% | |
| ACCTATGTGAGTGTCAAGTG+GGG | - | chr1_4:47053961-47053980 | None:intergenic | 45.0% | |
| CACCTATGTGAGTGTCAAGT+GGG | - | chr1_4:47053962-47053981 | None:intergenic | 45.0% | |
| TCACCTATGTGAGTGTCAAG+TGG | - | chr1_4:47053963-47053982 | None:intergenic | 45.0% | |
| TCTCACACACACCATAGGAA+AGG | + | chr1_4:47054086-47054105 | Msa0166060:intron | 45.0% | |
| CTCACACACACCATAGGAAA+GGG | + | chr1_4:47054087-47054106 | Msa0166060:intron | 45.0% | |
| CATGGGATCTCCAATCACAA+AGG | + | chr1_4:47054191-47054210 | Msa0166060:intron | 45.0% | |
| GGATCTCCAATCACAAAGGT+TGG | + | chr1_4:47054195-47054214 | Msa0166060:intron | 45.0% | |
| GCTACTAAACAAAGCCCCTT+GGG | - | chr1_4:47054290-47054309 | None:intergenic | 45.0% | |
| AGCTACTAAACAAAGCCCCT+TGG | - | chr1_4:47054291-47054310 | None:intergenic | 45.0% | |
| ! | TAAGTCACGGATTGCACAAC+TGG | + | chr1_4:47055365-47055384 | Msa0166060:intron | 45.0% |
| TGCATAACCTCCGCATTCTA+TGG | + | chr1_4:47055684-47055703 | Msa0166060:intron | 45.0% | |
| GAAATCATCCACAAGGGATC+TGG | - | chr1_4:47055807-47055826 | None:intergenic | 45.0% | |
| CTCCCTTGAAATCATCCACA+AGG | - | chr1_4:47055814-47055833 | None:intergenic | 45.0% | |
| AAGGTTCACCAGCTCTATCA+AGG | + | chr1_4:47056063-47056082 | Msa0166060:intron | 45.0% | |
| GCTGAAAACCTTGATAGAGC+TGG | - | chr1_4:47056074-47056093 | None:intergenic | 45.0% | |
| !!! | AAAATTAATTAACTAATTTT+TGG | + | chr1_4:47054119-47054138 | Msa0166060:intron | 5.0% |
| !!! | AATTGTTAATAATTTTATTT+TGG | - | chr1_4:47055908-47055927 | None:intergenic | 5.0% |
| TCGCGCCAAATTTCCTCTCT+TGG | + | chr1_4:47050514-47050533 | Msa0166060:CDS | 50.0% | |
| CTGCGCCAAGAGAGGAAATT+TGG | - | chr1_4:47050522-47050541 | None:intergenic | 50.0% | |
| TTGTGGCGTGACATTTGAGG+TGG | - | chr1_4:47050555-47050574 | None:intergenic | 50.0% | |
| GGTTTGTGGCGTGACATTTG+AGG | - | chr1_4:47050558-47050577 | None:intergenic | 50.0% | |
| ! | TTGGGGTGAGTCTTGGTTTG+TGG | - | chr1_4:47050572-47050591 | None:intergenic | 50.0% |
| !! | CTATGGATTGGGGTGAGTCT+TGG | - | chr1_4:47050579-47050598 | None:intergenic | 50.0% |
| AGTCGTTGAATCTGCCTGAC+TGG | + | chr1_4:47050796-47050815 | Msa0166060:CDS | 50.0% | |
| !! | TGCCTGACTGGCTTGTTCAT+TGG | + | chr1_4:47050808-47050827 | Msa0166060:CDS | 50.0% |
| !! | GCCTGACTGGCTTGTTCATT+GGG | + | chr1_4:47050809-47050828 | Msa0166060:CDS | 50.0% |
| !! | CCTGACTGGCTTGTTCATTG+GGG | + | chr1_4:47050810-47050829 | Msa0166060:CDS | 50.0% |
| TGAATTGCTCTTGCAGGCAG+TGG | + | chr1_4:47050939-47050958 | Msa0166060:intron | 50.0% | |
| !! | GGCAGTGGTGCTTTTTGCTA+TGG | + | chr1_4:47050954-47050973 | Msa0166060:intron | 50.0% |
| !! | GTGGTGCTTTTTGCTATGGG+TGG | + | chr1_4:47050958-47050977 | Msa0166060:CDS | 50.0% |
| GGGTGGTTATGGTACCTATC+TGG | + | chr1_4:47050975-47050994 | Msa0166060:CDS | 50.0% | |
| TAGCTTGGGATGCAAGTCCT+TGG | - | chr1_4:47051408-47051427 | None:intergenic | 50.0% | |
| TTTGCTCTTGGAGCTACTGG+TGG | + | chr1_4:47051449-47051468 | Msa0166060:CDS | 50.0% | |
| TACAGTCCTCATGCCGTTAC+AGG | + | chr1_4:47051643-47051662 | Msa0166060:intron | 50.0% | |
| ATAACGCCTGTAACGGCATG+AGG | - | chr1_4:47051652-47051671 | None:intergenic | 50.0% | |
| CATGCCGTTACAGGCGTTAT+TGG | + | chr1_4:47051652-47051671 | Msa0166060:CDS | 50.0% | |
| TGACACGACACCACCATATG+TGG | + | chr1_4:47051978-47051997 | Msa0166060:intron | 50.0% | |
| GAAAGTGAGGGGGTGAAAAG+TGG | - | chr1_4:47052266-47052285 | None:intergenic | 50.0% | |
| TTTCTTGTCCATGCTGCCCT+TGG | + | chr1_4:47052364-47052383 | Msa0166060:CDS | 50.0% | |
| ATTGAAGTCCAAGGGCAGCA+TGG | - | chr1_4:47052375-47052394 | None:intergenic | 50.0% | |
| GCTGCCCTTGGACTTCAATT+AGG | + | chr1_4:47052376-47052395 | Msa0166060:CDS | 50.0% | |
| GCACGCCTCAGGATATATAC+CGG | - | chr1_4:47053024-47053043 | None:intergenic | 50.0% | |
| TGCTGATCGCACTGTCCTTA+AGG | + | chr1_4:47053041-47053060 | Msa0166060:intron | 50.0% | |
| AGAAGAGCCTGCTGAATCCT+GGG | - | chr1_4:47053094-47053113 | None:intergenic | 50.0% | |
| AAGAAGAGCCTGCTGAATCC+TGG | - | chr1_4:47053095-47053114 | None:intergenic | 50.0% | |
| AGGATTCAGCAGGCTCTTCT+TGG | + | chr1_4:47053094-47053113 | Msa0166060:intron | 50.0% | |
| AAATAATCCAGGCACGCGCA+CGG | - | chr1_4:47053896-47053915 | None:intergenic | 50.0% | |
| GCACTTCTCACACACACCAT+AGG | + | chr1_4:47054081-47054100 | Msa0166060:intron | 50.0% | |
| GGGAACCCAACCTTTGTGAT+TGG | - | chr1_4:47054204-47054223 | None:intergenic | 50.0% | |
| TTGTGTGCATCGAGGGGATT+GGG | - | chr1_4:47054256-47054275 | None:intergenic | 50.0% | |
| TTTGTGTGCATCGAGGGGAT+TGG | - | chr1_4:47054257-47054276 | None:intergenic | 50.0% | |
| TAAGCGACAAACCCCCACAT+TGG | + | chr1_4:47054697-47054716 | Msa0166060:intron | 50.0% | |
| AAGCGACAAACCCCCACATT+GGG | + | chr1_4:47054698-47054717 | Msa0166060:intron | 50.0% | |
| GCACGCCTCAGGTTATATAC+CGG | - | chr1_4:47056474-47056493 | None:intergenic | 50.0% | |
| TGCTGATCGCACTGTCCTTA+AGG | + | chr1_4:47053041-47053060 | Msa0166060:intron | 50.0% | |
| AGAAGAGCCTGCTGAATCCT+GGG | - | chr1_4:47053094-47053113 | None:intergenic | 50.0% | |
| AAGAAGAGCCTGCTGAATCC+TGG | - | chr1_4:47053095-47053114 | None:intergenic | 50.0% | |
| AGGATTCAGCAGGCTCTTCT+TGG | + | chr1_4:47053094-47053113 | Msa0166060:intron | 50.0% | |
| !! | GCGACCTCCACTTTTACACG+TGG | - | chr1_4:47050258-47050277 | None:intergenic | 55.0% |
| AAGATGAGAGTGGAAGGGCG+AGG | - | chr1_4:47050308-47050327 | None:intergenic | 55.0% | |
| ! | TGGCGTGACATTTGAGGTGG+AGG | - | chr1_4:47050552-47050571 | None:intergenic | 55.0% |
| ACCTCCAGGTAAGAGAGCAG+CGG | - | chr1_4:47050662-47050681 | None:intergenic | 55.0% | |
| CCCCAATGAACAAGCCAGTC+AGG | - | chr1_4:47050813-47050832 | None:intergenic | 55.0% | |
| !! | TATGAGCACCGACGCAGACA+TGG | - | chr1_4:47052073-47052092 | None:intergenic | 55.0% |
| GGGGATTTGCGCTTATGAGG+CGG | - | chr1_4:47053073-47053092 | None:intergenic | 55.0% | |
| CTGGGGGATTTGCGCTTATG+AGG | - | chr1_4:47053076-47053095 | None:intergenic | 55.0% | |
| CTCATAAGCGCAAATCCCCC+AGG | + | chr1_4:47053074-47053093 | Msa0166060:intron | 55.0% | |
| CAAATCCCCCAGGATTCAGC+AGG | + | chr1_4:47053084-47053103 | Msa0166060:intron | 55.0% | |
| AAGAGCCTGCTGAATCCTGG+GGG | - | chr1_4:47053092-47053111 | None:intergenic | 55.0% | |
| GAAGAGCCTGCTGAATCCTG+GGG | - | chr1_4:47053093-47053112 | None:intergenic | 55.0% | |
| GGGCCGCTTGTATGAGATCT+TGG | - | chr1_4:47053941-47053960 | None:intergenic | 55.0% | |
| GCCCCACTTGACACTCACAT+AGG | + | chr1_4:47053957-47053976 | Msa0166060:intron | 55.0% | |
| CAAGTGACAACTCCCCCCAT+TGG | + | chr1_4:47054777-47054796 | Msa0166060:intron | 55.0% | |
| GGGGATTTGCGCTTATGAGG+CGG | - | chr1_4:47053073-47053092 | None:intergenic | 55.0% | |
| CTGGGGGATTTGCGCTTATG+AGG | - | chr1_4:47053076-47053095 | None:intergenic | 55.0% | |
| CTCATAAGCGCAAATCCCCC+AGG | + | chr1_4:47053074-47053093 | Msa0166060:intron | 55.0% | |
| CAAATCCCCCAGGATTCAGC+AGG | + | chr1_4:47053084-47053103 | Msa0166060:intron | 55.0% | |
| AAGAGCCTGCTGAATCCTGG+GGG | - | chr1_4:47053092-47053111 | None:intergenic | 55.0% | |
| GAAGAGCCTGCTGAATCCTG+GGG | - | chr1_4:47053093-47053112 | None:intergenic | 55.0% | |
| TACGCCGCTGCTCTCTTACC+TGG | + | chr1_4:47050655-47050674 | Msa0166060:CDS | 60.0% | |
| TTGGGGTCACCCTGCCAACA+TGG | + | chr1_4:47050827-47050846 | Msa0166060:CDS | 60.0% | |
| GGAGGAAAAGGCCAAGGCCA+AGG | + | chr1_4:47051388-47051407 | Msa0166060:intron | 60.0% | |
| GGGATGCAAGTCCTTGGCCT+TGG | - | chr1_4:47051402-47051421 | None:intergenic | 60.0% | |
| AGCGCCAACGGCAAGAATCG+CGG | - | chr1_4:47053857-47053876 | None:intergenic | 60.0% | |
| GATTCTTGCCGTTGGCGCTG+TGG | + | chr1_4:47053858-47053877 | Msa0166060:intron | 60.0% | |
| GCGAGTTGCTGCGCCAAGAG+AGG | - | chr1_4:47050530-47050549 | None:intergenic | 65.0% | |
| GCCGCTGCTCTCTTACCTGG+AGG | + | chr1_4:47050658-47050677 | Msa0166060:CDS | 65.0% | |
| CAGTGCGATCAGCACGCCTC+AGG | - | chr1_4:47053035-47053054 | None:intergenic | 65.0% | |
| ! | TCGCGGGGGTGTGAAGCGAA+TGG | - | chr1_4:47053840-47053859 | None:intergenic | 65.0% |
| ACCCCCGCGATTCTTGCCGT+TGG | + | chr1_4:47053850-47053869 | Msa0166060:intron | 65.0% | |
| GCCAACGGCAAGAATCGCGG+GGG | - | chr1_4:47053854-47053873 | None:intergenic | 65.0% | |
| CGCCAACGGCAAGAATCGCG+GGG | - | chr1_4:47053855-47053874 | None:intergenic | 65.0% | |
| GCGCCAACGGCAAGAATCGC+GGG | - | chr1_4:47053856-47053875 | None:intergenic | 65.0% | |
| TTCGCGCACCACAGCGCCAA+CGG | - | chr1_4:47053869-47053888 | None:intergenic | 65.0% | |
| TGGCGCTGTGGTGCGCGAAT+AGG | + | chr1_4:47053870-47053889 | Msa0166060:intron | 65.0% | |
| CAGTGCGATCAGCACGCCTC+AGG | - | chr1_4:47053035-47053054 | None:intergenic | 65.0% | |
| GAATAGGCCGTGCGCGTGCC+TGG | + | chr1_4:47053886-47053905 | Msa0166060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 47050247 | 47057246 | 47050247 | ID=Msa0166060;Name=Msa0166060 |
| chr1_4 | mRNA | 47050247 | 47057246 | 47050247 | ID=Msa0166060-mRNA-1;Parent=Msa0166060;Name=Msa0166060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=198|1|1|1|0.71|0.62|8|436|235 |
| chr1_4 | exon | 47050247 | 47050679 | 47050247 | ID=Msa0166060-mRNA-1:exon:13560;Parent=Msa0166060-mRNA-1 |
| chr1_4 | exon | 47050751 | 47050848 | 47050751 | ID=Msa0166060-mRNA-1:exon:13561;Parent=Msa0166060-mRNA-1 |
| chr1_4 | exon | 47050955 | 47051026 | 47050955 | ID=Msa0166060-mRNA-1:exon:13562;Parent=Msa0166060-mRNA-1 |
| chr1_4 | exon | 47051389 | 47051513 | 47051389 | ID=Msa0166060-mRNA-1:exon:13563;Parent=Msa0166060-mRNA-1 |
| chr1_4 | exon | 47051648 | 47051720 | 47051648 | ID=Msa0166060-mRNA-1:exon:13564;Parent=Msa0166060-mRNA-1 |
| chr1_4 | exon | 47052307 | 47052431 | 47052307 | ID=Msa0166060-mRNA-1:exon:13565;Parent=Msa0166060-mRNA-1 |
| chr1_4 | exon | 47052550 | 47052816 | 47052550 | ID=Msa0166060-mRNA-1:exon:13566;Parent=Msa0166060-mRNA-1 |
| chr1_4 | exon | 47057098 | 47057246 | 47057098 | ID=Msa0166060-mRNA-1:exon:13567;Parent=Msa0166060-mRNA-1 |
| chr1_4 | five_prime_UTR | 47050247 | 47050444 | 47050247 | ID=Msa0166060-mRNA-1:five_prime_utr;Parent=Msa0166060-mRNA-1 |
| chr1_4 | CDS | 47050445 | 47050679 | 47050445 | ID=Msa0166060-mRNA-1:cds;Parent=Msa0166060-mRNA-1 |
| chr1_4 | CDS | 47050751 | 47050848 | 47050751 | ID=Msa0166060-mRNA-1:cds;Parent=Msa0166060-mRNA-1 |
| chr1_4 | CDS | 47050955 | 47051026 | 47050955 | ID=Msa0166060-mRNA-1:cds;Parent=Msa0166060-mRNA-1 |
| chr1_4 | CDS | 47051389 | 47051513 | 47051389 | ID=Msa0166060-mRNA-1:cds;Parent=Msa0166060-mRNA-1 |
| chr1_4 | CDS | 47051648 | 47051720 | 47051648 | ID=Msa0166060-mRNA-1:cds;Parent=Msa0166060-mRNA-1 |
| chr1_4 | CDS | 47052307 | 47052411 | 47052307 | ID=Msa0166060-mRNA-1:cds;Parent=Msa0166060-mRNA-1 |
| chr1_4 | three_prime_UTR | 47052412 | 47052431 | 47052412 | ID=Msa0166060-mRNA-1:three_prime_utr;Parent=Msa0166060-mRNA-1 |
| chr1_4 | three_prime_UTR | 47052550 | 47052816 | 47052550 | ID=Msa0166060-mRNA-1:three_prime_utr;Parent=Msa0166060-mRNA-1 |
| chr1_4 | three_prime_UTR | 47057098 | 47057246 | 47057098 | ID=Msa0166060-mRNA-1:three_prime_utr;Parent=Msa0166060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
