AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0438990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438990 MtrunA17_Chr2g0283351 99.052 422 3 1 1 421 1 422 0.0 843
Msa0438990 MtrunA17_Chr4g0046081 85.075 402 57 1 23 421 19 420 0.0 702
Msa0438990 MtrunA17_Chr5g0396481 39.550 311 186 1 82 390 72 382 7.64e-63 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438990 AT5G45930.1 85.117 383 55 1 41 421 36 418 0.0 643
Msa0438990 AT4G18480.1 79.433 423 83 3 3 421 2 424 0.0 638
Msa0438990 AT1G08520.1 38.762 307 186 1 82 386 80 386 3.33e-62 214

Find 134 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGATCTTGATCAATT+TGG 0.148397 3_3:+3773203 None:intergenic
CCTGCTCGGTTTATCTTAAT+TGG 0.162278 3_3:-3773448 Msa0438990:CDS
CCCATGACTTCTGGATCTTC+TGG 0.163612 3_3:+3773772 None:intergenic
CGATTTACTTCCTGAAATTA+AGG 0.203719 3_3:-3773824 Msa0438990:CDS
GATTGGAGGTGTAATGATTA+TGG 0.219072 3_3:-3773890 Msa0438990:CDS
GTGAGAGATCGAGTTATAAA+AGG 0.250411 3_3:-3773742 Msa0438990:CDS
AACTGTAGTAGAAAGCTTTA+TGG 0.257689 3_3:-3774826 Msa0438990:CDS
TAGCAGTATAATATGAATAA+AGG 0.259027 3_3:+3775206 None:intergenic
ATCATTACACCTCCAATCTT+TGG 0.264491 3_3:+3773895 None:intergenic
GGCCTGAGCTCCCCTTCTTC+AGG 0.282009 3_3:+3773415 None:intergenic
TAAAGCTTTGGCTGCTCTTA+AGG 0.287507 3_3:-3773107 Msa0438990:CDS
TATTTATTTATAGCCTGATA+TGG 0.299156 3_3:-3772764 Msa0438990:three_prime_UTR
CGGTTTATCTTAATTGGTTC+GGG 0.302908 3_3:-3773442 Msa0438990:CDS
TGTTGATGAAGTTAATCTTT+TGG 0.310779 3_3:-3773554 Msa0438990:CDS
AGAAAGCTTTATGGAGGAAT+TGG 0.315276 3_3:-3774817 Msa0438990:CDS
ATGCTCAAGTCGGGACTGTT+AGG 0.321538 3_3:-3773366 Msa0438990:CDS
CCACAACTATTAGATAGATT+TGG 0.329771 3_3:-3773394 Msa0438990:CDS
TTCATAAATTTCTTGTATAC+AGG 0.330795 3_3:-3772829 Msa0438990:three_prime_UTR
AGCAGTATAATATGAATAAA+GGG 0.332217 3_3:+3775207 None:intergenic
TCGGTTTATCTTAATTGGTT+CGG 0.341266 3_3:-3773443 Msa0438990:CDS
CCATTGGAGTCAATAGATTC+AGG 0.345881 3_3:-3773010 Msa0438990:CDS
TCTTCTGGGTCTGAGTTATA+TGG 0.351902 3_3:+3773787 None:intergenic
CTACAACACATAACCATATC+AGG 0.354520 3_3:+3772751 None:intergenic
CCATGACTTCTGGATCTTCT+GGG 0.365705 3_3:+3773773 None:intergenic
TAAGTCTCTCGAAATTCCTT+TGG 0.366656 3_3:+3773289 None:intergenic
AACATGGTTGATTTGCCATT+AGG 0.368329 3_3:-3773688 Msa0438990:CDS
TGAGAGATCGAGTTATAAAA+GGG 0.371671 3_3:-3773741 Msa0438990:CDS
ATTGGAGGTGTAATGATTAT+GGG 0.375076 3_3:-3773889 Msa0438990:CDS
AGATTGTAGAGGAGAGAGCT+AGG 0.378530 3_3:-3773324 Msa0438990:CDS
ACTTCGACTCCCATGACTTC+TGG 0.379031 3_3:+3773763 None:intergenic
AGACGGTGTCTCAAGCAGTT+AGG 0.384711 3_3:+3773043 None:intergenic
CATTAGGAGCTACAGAAGAT+AGG 0.394363 3_3:-3773672 Msa0438990:CDS
GGTTAGAGAGAGAGTGTGAA+TGG 0.402142 3_3:+3774958 None:intergenic
AAAGCTTTGGCTGCTCTTAA+GGG 0.402953 3_3:-3773106 Msa0438990:CDS
ATCTGTGAGCTTCTCCTGCT+CGG 0.406916 3_3:+3773261 None:intergenic
GCAGATGGCATGCTTCCTAT+TGG 0.415599 3_3:+3775131 None:intergenic
TATGGTTATGTGTTGTAGTA+AGG 0.417386 3_3:-3772746 Msa0438990:three_prime_UTR
GTTGTTGAAGACATAGTTGA+AGG 0.419164 3_3:+3775043 None:intergenic
CCGGATGGTGGGAGGCCAAT+AGG 0.419967 3_3:-3775146 Msa0438990:five_prime_UTR
TTGTTGGATTCTGCTGCATC+AGG 0.426710 3_3:-3773511 Msa0438990:CDS
CTATCTTCTGTAGCTCCTAA+TGG 0.430630 3_3:+3773673 None:intergenic
TCACTTGGTTGATGTGTTGT+TGG 0.430871 3_3:-3773527 Msa0438990:CDS
AGAGAGAGAGTGTGAATGGA+AGG 0.431677 3_3:+3774962 None:intergenic
GAGAGTGTGAATGGAAGGGT+TGG 0.431700 3_3:+3774967 None:intergenic
ATCAACTACGGTTAGGTCAT+TGG 0.437961 3_3:-3773848 Msa0438990:CDS
AACGTGATTGATCCAAAGAT+TGG 0.439659 3_3:-3773907 Msa0438990:CDS
TCAGTGGCAACATTAACAAC+AGG 0.445906 3_3:+3774763 None:intergenic
GACGGTGTCTCAAGCAGTTA+GGG 0.450521 3_3:+3773044 None:intergenic
AATCTATCTATCTTCTTATC+CGG 0.450606 3_3:-3775165 Msa0438990:five_prime_UTR
TTAGAATTTAACCTTTCCTA+TGG 0.452291 3_3:-3772883 Msa0438990:three_prime_UTR
ATCCTGAAGAAGGGGAGCTC+AGG 0.452372 3_3:-3773417 Msa0438990:CDS
TGAAGTTAACTCTGTAGAAC+AGG 0.454733 3_3:-3774743 Msa0438990:intron
AAACAGAGCTGCTAAAGCTT+TGG 0.461836 3_3:-3773119 Msa0438990:CDS
TCTTTGGATCAATCACGTTA+AGG 0.470100 3_3:+3773911 None:intergenic
CAAAAGGGTACACCGGCCTC+TGG 0.473741 3_3:+3773974 None:intergenic
GGTGTCAAGGCATTTGAGCC+TGG 0.474133 3_3:-3773610 Msa0438990:CDS
CCCAGAAGATCCAGAAGTCA+TGG 0.480402 3_3:-3773773 Msa0438990:CDS
TGTCCTACTATCGCAGCAAA+AGG 0.481621 3_3:+3773958 None:intergenic
ATCTCAAGGTGAAAATCTCT+AGG 0.491689 3_3:-3773189 Msa0438990:CDS
TTGGAATGCATGCTCAAGTC+GGG 0.491946 3_3:-3773375 Msa0438990:CDS
ATTGGAATTAGTAGCACAAA+GGG 0.494468 3_3:-3774799 Msa0438990:CDS
TTTCTATCTCGCATCCTGCT+CGG 0.495735 3_3:-3773462 Msa0438990:CDS
CCTATTGGCCTCCCACCATC+CGG 0.496429 3_3:+3775146 None:intergenic
GTGTGAATGGAAGGGTTGGA+AGG 0.502705 3_3:+3774971 None:intergenic
AGCTCTCACTGAGGGTGTCA+AGG 0.503283 3_3:-3773623 Msa0438990:CDS
CCTGAATCTATTGACTCCAA+TGG 0.518336 3_3:+3773010 None:intergenic
CAGGGAAATCAACTACGGTT+AGG 0.519735 3_3:-3773855 Msa0438990:CDS
GAGAGAGAGTGTGAATGGAA+GGG 0.521667 3_3:+3774963 None:intergenic
TGCTCAAGTCGGGACTGTTA+GGG 0.522981 3_3:-3773365 Msa0438990:CDS
CTTGAGACACCGTCTTAGAA+AGG 0.523882 3_3:-3773035 Msa0438990:CDS
GAATTTAACCTTTCCTATGG+CGG 0.526063 3_3:-3772880 Msa0438990:three_prime_UTR
TGGTTATGTGTTGTAGTAAG+GGG 0.530247 3_3:-3772744 Msa0438990:three_prime_UTR
TTCTAAAGAAAGCCAGAGGC+CGG 0.532237 3_3:-3773986 Msa0438990:CDS
AGAGACTTACAAAGCCGAGC+AGG 0.533133 3_3:-3773275 Msa0438990:CDS
GGTTCGGGAAATCCTGAAGA+AGG 0.534941 3_3:-3773427 Msa0438990:CDS
TTGGAGGTGTAATGATTATG+GGG 0.535125 3_3:-3773888 Msa0438990:CDS
ATTAGGAGCTACAGAAGATA+GGG 0.539881 3_3:-3773671 Msa0438990:CDS
CAATATCCTCTACAGTCACT+TGG 0.541710 3_3:+3773077 None:intergenic
TGTGCAGAGTTGAATGTGGA+TGG 0.543317 3_3:-3773163 Msa0438990:CDS
CTATTAGCTAAAGCTAATAG+AGG 0.543722 3_3:-3773586 Msa0438990:CDS
CTATCTTCTTATCCGGATGG+TGG 0.546147 3_3:-3775158 Msa0438990:five_prime_UTR
ATGGTTATGTGTTGTAGTAA+GGG 0.551998 3_3:-3772745 Msa0438990:three_prime_UTR
TGGATTCTGCTGCATCAGGT+TGG 0.555239 3_3:-3773507 Msa0438990:CDS
CCAAATTGATCAAGATCTCA+AGG 0.555254 3_3:-3773203 Msa0438990:CDS
TTAGCTTTAGCTAATAGTCC+AGG 0.555649 3_3:+3773592 None:intergenic
AATAAATATAGTATAAGAGA+AGG 0.557426 3_3:+3772779 None:intergenic
CATAAAATCCGCCATAGGAA+AGG 0.562276 3_3:+3772872 None:intergenic
CACACTCTCTCTCTAACCTC+AGG 0.564110 3_3:-3774953 Msa0438990:intron
GCAGTATAATATGAATAAAG+GGG 0.566931 3_3:+3775208 None:intergenic
TATCTTCTTATCCGGATGGT+GGG 0.568293 3_3:-3775157 Msa0438990:five_prime_UTR
TTGGAACACAGTGGAGAGAG+AGG 0.569168 3_3:-3773488 Msa0438990:CDS
CCAGAAGATCCAGAAGTCAT+GGG 0.571144 3_3:-3773772 Msa0438990:CDS
GGAGAAGAAAGGTAACGTGA+AGG 0.574357 3_3:+3774992 None:intergenic
CCAATTAAGATAAACCGAGC+AGG 0.575699 3_3:+3773448 None:intergenic
AAGGGTTGGAAGGAGAAGAA+AGG 0.575980 3_3:+3774981 None:intergenic
CCGTCTTAGAAAGGATCCAT+TGG 0.583615 3_3:-3773026 Msa0438990:CDS
GTCCTACTATCGCAGCAAAA+GGG 0.584833 3_3:+3773959 None:intergenic
GTTCGGGAAATCCTGAAGAA+GGG 0.590838 3_3:-3773426 Msa0438990:CDS
TATCTATCTTCTTATCCGGA+TGG 0.591591 3_3:-3775161 Msa0438990:five_prime_UTR
TCTCAAGGTGAAAATCTCTA+GGG 0.593212 3_3:-3773188 Msa0438990:CDS
GGTTATGTGTTGTAGTAAGG+GGG 0.593356 3_3:-3772743 Msa0438990:three_prime_UTR
CCAAATCTATCTAATAGTTG+TGG 0.593953 3_3:+3773394 None:intergenic
TTCTACAGAGTTAACTTCAG+TGG 0.594027 3_3:+3774747 None:intergenic
CTTCTTATCCGGATGGTGGG+AGG 0.594771 3_3:-3775154 Msa0438990:five_prime_UTR
ATACAACAGTTTGTCTGCTG+TGG 0.596276 3_3:-3772932 Msa0438990:three_prime_UTR
GTGATTGATCCAAAGATTGG+AGG 0.596512 3_3:-3773904 Msa0438990:CDS
ACTATGTCTTCAACAACACT+AGG 0.601368 3_3:-3775037 Msa0438990:CDS
AAGACCATAAAATCCGCCAT+AGG 0.602662 3_3:+3772867 None:intergenic
CCAATGGATCCTTTCTAAGA+CGG 0.606040 3_3:+3773026 None:intergenic
GTAGCACAAAGGGAAAGTCT+AGG 0.606575 3_3:-3774789 Msa0438990:CDS
AAGAGACCAAGTGACTGTAG+AGG 0.612252 3_3:-3773083 Msa0438990:CDS
TTCGGGAAATCCTGAAGAAG+GGG 0.616573 3_3:-3773425 Msa0438990:CDS
TTTGGAATGCATGCTCAAGT+CGG 0.624410 3_3:-3773376 Msa0438990:CDS
TTGAATGTGGATGGATTGAG+AGG 0.624939 3_3:-3773154 Msa0438990:CDS
CAGATCAAATTACCTCGGCA+AGG 0.628152 3_3:-3773243 Msa0438990:CDS
CGAAAGTATCTTCCTTGCCG+AGG 0.629459 3_3:+3773231 None:intergenic
AATTGGAATTAGTAGCACAA+AGG 0.629598 3_3:-3774800 Msa0438990:CDS
ACGTGAAGGAAGAAATGCAA+TGG 0.631404 3_3:+3775006 None:intergenic
TGTAGTAGAAAGCTTTATGG+AGG 0.634921 3_3:-3774823 Msa0438990:CDS
TGGAGGTGTAATGATTATGG+GGG 0.635560 3_3:-3773887 Msa0438990:CDS
CAGTATAATATGAATAAAGG+GGG 0.636966 3_3:+3775209 None:intergenic
GCTACAGAAGATAGGGTGTG+TGG 0.637186 3_3:-3773664 Msa0438990:CDS
TAGGTTTGACAAGAATCCAA+AGG 0.644338 3_3:-3773305 Msa0438990:CDS
AGGAACAGGGAAATCAACTA+CGG 0.645219 3_3:-3773860 Msa0438990:CDS
TGGAACACAGTGGAGAGAGA+GGG 0.656944 3_3:-3773487 Msa0438990:CDS
GAGAGATCGAGTTATAAAAG+GGG 0.661074 3_3:-3773740 Msa0438990:CDS
GCTGAGAGTGAAGATTGTAG+AGG 0.661411 3_3:-3773335 Msa0438990:CDS
GCTCACAGATCAAATTACCT+CGG 0.673145 3_3:-3773248 Msa0438990:CDS
ATCGCAGCAAAAGGGTACAC+CGG 0.682408 3_3:+3773967 None:intergenic
GGTGTGTGCAGAGTTGAATG+TGG 0.691143 3_3:-3773167 Msa0438990:CDS
CAGTGGCAACATTAACAACA+GGG 0.692478 3_3:+3774764 None:intergenic
TGTGTTGAGCAAAATCAACA+TGG 0.720795 3_3:-3773704 Msa0438990:CDS
CTATTTCTAAAGAAAGCCAG+AGG 0.724955 3_3:-3773990 Msa0438990:CDS
TGCATCAGGTTGGAACACAG+TGG 0.734702 3_3:-3773497 Msa0438990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCTATTTTAGCAAATTA+TGG - chr3_3:3773200-3773219 Msa0438990:CDS 15.0%
!! AATAAATATAGTATAAGAGA+AGG + chr3_3:3775124-3775143 None:intergenic 15.0%
!! AGCAGTATAATATGAATAAA+GGG + chr3_3:3772696-3772715 None:intergenic 20.0%
!! TAGCAGTATAATATGAATAA+AGG + chr3_3:3772697-3772716 None:intergenic 20.0%
!!! TTAAAAAAGTGCAATGTATA+AGG + chr3_3:3773270-3773289 None:intergenic 20.0%
!! TAAACTTATATAAGTCTGTT+TGG - chr3_3:3773287-3773306 Msa0438990:CDS 20.0%
!! TTCATAAATTTCTTGTATAC+AGG - chr3_3:3775071-3775090 Msa0438990:five_prime_UTR 20.0%
!! TATTTATTTATAGCCTGATA+TGG - chr3_3:3775136-3775155 Msa0438990:five_prime_UTR 20.0%
! CAGTATAATATGAATAAAGG+GGG + chr3_3:3772694-3772713 None:intergenic 25.0%
! GCAGTATAATATGAATAAAG+GGG + chr3_3:3772695-3772714 None:intergenic 25.0%
! AATCTATCTATCTTCTTATC+CGG - chr3_3:3772735-3772754 Msa0438990:three_prime_UTR 25.0%
!! ACTCAAGTTTATGTGTTTTA+TGG + chr3_3:3772794-3772813 None:intergenic 25.0%
!! AATTGCAGATAGAATTTTCT+AGG - chr3_3:3773597-3773616 Msa0438990:CDS 25.0%
! CTTGTAAGTTGTAACATTAT+AGG + chr3_3:3773739-3773758 None:intergenic 25.0%
! ACTTACAAGCTAATTCAAAT+TGG - chr3_3:3773750-3773769 Msa0438990:CDS 25.0%
! TGCATGAAATTAGTATACTT+TGG + chr3_3:3773777-3773796 None:intergenic 25.0%
! ACTAATTTCATGCATTTGTT+AGG - chr3_3:3773783-3773802 Msa0438990:CDS 25.0%
! TTCTTAGAAGTAAAGGATTA+GGG - chr3_3:3773806-3773825 Msa0438990:CDS 25.0%
!!! TGTTGATGAAGTTAATCTTT+TGG - chr3_3:3774346-3774365 Msa0438990:intron 25.0%
! TTAGAATTTAACCTTTCCTA+TGG - chr3_3:3775017-3775036 Msa0438990:CDS 25.0%
!!! GACTGTTTTAAGTAAATACA+TGG + chr3_3:3775102-3775121 None:intergenic 25.0%
! TTTATGTGTTTTATGGCAGA+TGG + chr3_3:3772787-3772806 None:intergenic 30.0%
CAATATATACAACATACCTG+AGG + chr3_3:3772966-3772985 None:intergenic 30.0%
!! TTCCTTTGCTTTTCTTGTTT+TGG - chr3_3:3773011-3773030 Msa0438990:CDS 30.0%
TTTGGACATTATGTGATTGT+TGG - chr3_3:3773029-3773048 Msa0438990:CDS 30.0%
TTGGAATATACATTGATGCA+GGG - chr3_3:3773048-3773067 Msa0438990:CDS 30.0%
AACTGTAGTAGAAAGCTTTA+TGG - chr3_3:3773074-3773093 Msa0438990:CDS 30.0%
AATTGGAATTAGTAGCACAA+AGG - chr3_3:3773100-3773119 Msa0438990:CDS 30.0%
ATTGGAATTAGTAGCACAAA+GGG - chr3_3:3773101-3773120 Msa0438990:CDS 30.0%
AGTATTTGGACACTATTGTT+TGG + chr3_3:3773569-3773588 None:intergenic 30.0%
GCAATTGCATATCAAGTATT+TGG + chr3_3:3773583-3773602 None:intergenic 30.0%
TGCAAACAAGTTAAATGAGA+AGG + chr3_3:3773643-3773662 None:intergenic 30.0%
TGTTAGGTTCTTAGAAGTAA+AGG - chr3_3:3773799-3773818 Msa0438990:CDS 30.0%
GTTCTTAGAAGTAAAGGATT+AGG - chr3_3:3773805-3773824 Msa0438990:CDS 30.0%
ATATCAAAAGTTCACAGAGT+TGG + chr3_3:3773876-3773895 None:intergenic 30.0%
TAGAAATAGTATTCAGACTC+TGG + chr3_3:3773899-3773918 None:intergenic 30.0%
! ATTGGAGGTGTAATGATTAT+GGG - chr3_3:3774011-3774030 Msa0438990:intron 30.0%
CGATTTACTTCCTGAAATTA+AGG - chr3_3:3774076-3774095 Msa0438990:intron 30.0%
CCAAAAACAACCTTAATTTC+AGG + chr3_3:3774089-3774108 None:intergenic 30.0%
!! CCTGAAATTAAGGTTGTTTT+TGG - chr3_3:3774086-3774105 Msa0438990:intron 30.0%
TGAGAGATCGAGTTATAAAA+GGG - chr3_3:3774159-3774178 Msa0438990:intron 30.0%
CTATTAGCTAAAGCTAATAG+AGG - chr3_3:3774314-3774333 Msa0438990:intron 30.0%
! TAATCTTTTGGATGATCACT+TGG - chr3_3:3774358-3774377 Msa0438990:intron 30.0%
TCGGTTTATCTTAATTGGTT+CGG - chr3_3:3774457-3774476 Msa0438990:intron 30.0%
CCAAATCTATCTAATAGTTG+TGG + chr3_3:3774509-3774528 None:intergenic 30.0%
CCACAACTATTAGATAGATT+TGG - chr3_3:3774506-3774525 Msa0438990:intron 30.0%
TATGGTTATGTGTTGTAGTA+AGG - chr3_3:3775154-3775173 Msa0438990:five_prime_UTR 30.0%
ATGGTTATGTGTTGTAGTAA+GGG - chr3_3:3775155-3775174 Msa0438990:five_prime_UTR 30.0%
TATCTATCTTCTTATCCGGA+TGG - chr3_3:3772739-3772758 Msa0438990:three_prime_UTR 35.0%
GTTGTTGAAGACATAGTTGA+AGG + chr3_3:3772860-3772879 None:intergenic 35.0%
ACTATGTCTTCAACAACACT+AGG - chr3_3:3772863-3772882 Msa0438990:three_prime_UTR 35.0%
GTCCAAAACAAGAAAAGCAA+AGG + chr3_3:3773016-3773035 None:intergenic 35.0%
GTTGGAATATACATTGATGC+AGG - chr3_3:3773047-3773066 Msa0438990:CDS 35.0%
! TGTAGTAGAAAGCTTTATGG+AGG - chr3_3:3773077-3773096 Msa0438990:CDS 35.0%
! AGAAAGCTTTATGGAGGAAT+TGG - chr3_3:3773083-3773102 Msa0438990:CDS 35.0%
TTCTACAGAGTTAACTTCAG+TGG + chr3_3:3773156-3773175 None:intergenic 35.0%
TGAAGTTAACTCTGTAGAAC+AGG - chr3_3:3773157-3773176 Msa0438990:CDS 35.0%
!! CTATTTCTAAAGAAAGCCAG+AGG - chr3_3:3773910-3773929 Msa0438990:CDS 35.0%
TCTTTGGATCAATCACGTTA+AGG + chr3_3:3773992-3774011 None:intergenic 35.0%
AACGTGATTGATCCAAAGAT+TGG - chr3_3:3773993-3774012 Msa0438990:CDS 35.0%
ATCATTACACCTCCAATCTT+TGG + chr3_3:3774008-3774027 None:intergenic 35.0%
! GATTGGAGGTGTAATGATTA+TGG - chr3_3:3774010-3774029 Msa0438990:intron 35.0%
! TTGGAGGTGTAATGATTATG+GGG - chr3_3:3774012-3774031 Msa0438990:intron 35.0%
GTGAGAGATCGAGTTATAAA+AGG - chr3_3:3774158-3774177 Msa0438990:intron 35.0%
GAGAGATCGAGTTATAAAAG+GGG - chr3_3:3774160-3774179 Msa0438990:intron 35.0%
!! GTTGATTTTGCTCAACACAA+TGG + chr3_3:3774195-3774214 None:intergenic 35.0%
TGTGTTGAGCAAAATCAACA+TGG - chr3_3:3774196-3774215 Msa0438990:intron 35.0%
!! AACATGGTTGATTTGCCATT+AGG - chr3_3:3774212-3774231 Msa0438990:intron 35.0%
ATTAGGAGCTACAGAAGATA+GGG - chr3_3:3774229-3774248 Msa0438990:intron 35.0%
ATTGAAAAAGCTCTCACTGA+GGG - chr3_3:3774269-3774288 Msa0438990:intron 35.0%
!! TTAGCTTTAGCTAATAGTCC+AGG + chr3_3:3774311-3774330 None:intergenic 35.0%
! CGGTTTATCTTAATTGGTTC+GGG - chr3_3:3774458-3774477 Msa0438990:intron 35.0%
TAGGTTTGACAAGAATCCAA+AGG - chr3_3:3774595-3774614 Msa0438990:intron 35.0%
TAAGTCTCTCGAAATTCCTT+TGG + chr3_3:3774614-3774633 None:intergenic 35.0%
CCTTGAGATCTTGATCAATT+TGG + chr3_3:3774700-3774719 None:intergenic 35.0%
CCAAATTGATCAAGATCTCA+AGG - chr3_3:3774697-3774716 Msa0438990:intron 35.0%
ATCTCAAGGTGAAAATCTCT+AGG - chr3_3:3774711-3774730 Msa0438990:intron 35.0%
TCTCAAGGTGAAAATCTCTA+GGG - chr3_3:3774712-3774731 Msa0438990:intron 35.0%
GAATTTAACCTTTCCTATGG+CGG - chr3_3:3775020-3775039 Msa0438990:CDS 35.0%
CTACAACACATAACCATATC+AGG + chr3_3:3775152-3775171 None:intergenic 35.0%
TGGTTATGTGTTGTAGTAAG+GGG - chr3_3:3775156-3775175 Msa0438990:five_prime_UTR 35.0%
CTGCTAAAAAGAGAGAGAGA+AGG - chr3_3:3772711-3772730 Msa0438990:three_prime_UTR 40.0%
TATCTTCTTATCCGGATGGT+GGG - chr3_3:3772743-3772762 Msa0438990:three_prime_UTR 40.0%
ACGTGAAGGAAGAAATGCAA+TGG + chr3_3:3772897-3772916 None:intergenic 40.0%
CAGTGGCAACATTAACAACA+GGG + chr3_3:3773139-3773158 None:intergenic 40.0%
TCAGTGGCAACATTAACAAC+AGG + chr3_3:3773140-3773159 None:intergenic 40.0%
GAAGTAAAGGATTAGGGTCT+TGG - chr3_3:3773812-3773831 Msa0438990:CDS 40.0%
GTGATTGATCCAAAGATTGG+AGG - chr3_3:3773996-3774015 Msa0438990:CDS 40.0%
! TGGAGGTGTAATGATTATGG+GGG - chr3_3:3774013-3774032 Msa0438990:intron 40.0%
GTAATGATTATGGGGGATAG+AGG - chr3_3:3774020-3774039 Msa0438990:intron 40.0%
AGGAACAGGGAAATCAACTA+CGG - chr3_3:3774040-3774059 Msa0438990:intron 40.0%
ATCAACTACGGTTAGGTCAT+TGG - chr3_3:3774052-3774071 Msa0438990:intron 40.0%
TCTTCTGGGTCTGAGTTATA+TGG + chr3_3:3774116-3774135 None:intergenic 40.0%
CTATCTTCTGTAGCTCCTAA+TGG + chr3_3:3774230-3774249 None:intergenic 40.0%
CATTAGGAGCTACAGAAGAT+AGG - chr3_3:3774228-3774247 Msa0438990:intron 40.0%
CATTGAAAAAGCTCTCACTG+AGG - chr3_3:3774268-3774287 Msa0438990:intron 40.0%
! TCACTTGGTTGATGTGTTGT+TGG - chr3_3:3774373-3774392 Msa0438990:intron 40.0%
CCAATTAAGATAAACCGAGC+AGG + chr3_3:3774455-3774474 None:intergenic 40.0%
CCTGCTCGGTTTATCTTAAT+TGG - chr3_3:3774452-3774471 Msa0438990:intron 40.0%
! TTTGGAATGCATGCTCAAGT+CGG - chr3_3:3774524-3774543 Msa0438990:intron 40.0%
GCTCACAGATCAAATTACCT+CGG - chr3_3:3774652-3774671 Msa0438990:intron 40.0%
!! TTGAATGTGGATGGATTGAG+AGG - chr3_3:3774746-3774765 Msa0438990:CDS 40.0%
AAACAGAGCTGCTAAAGCTT+TGG - chr3_3:3774781-3774800 Msa0438990:CDS 40.0%
! TAAAGCTTTGGCTGCTCTTA+AGG - chr3_3:3774793-3774812 Msa0438990:CDS 40.0%
! AAAGCTTTGGCTGCTCTTAA+GGG - chr3_3:3774794-3774813 Msa0438990:CDS 40.0%
CAATATCCTCTACAGTCACT+TGG + chr3_3:3774826-3774845 None:intergenic 40.0%
! CCAATGGATCCTTTCTAAGA+CGG + chr3_3:3774877-3774896 None:intergenic 40.0%
!! CCTGAATCTATTGACTCCAA+TGG + chr3_3:3774893-3774912 None:intergenic 40.0%
CCATTGGAGTCAATAGATTC+AGG - chr3_3:3774890-3774909 Msa0438990:intron 40.0%
ATACAACAGTTTGTCTGCTG+TGG - chr3_3:3774968-3774987 Msa0438990:CDS 40.0%
CATAAAATCCGCCATAGGAA+AGG + chr3_3:3775031-3775050 None:intergenic 40.0%
!!! CTTTCCTATGGCGGATTTTA+TGG - chr3_3:3775029-3775048 Msa0438990:CDS 40.0%
AAGACCATAAAATCCGCCAT+AGG + chr3_3:3775036-3775055 None:intergenic 40.0%
GGTTATGTGTTGTAGTAAGG+GGG - chr3_3:3775157-3775176 Msa0438990:five_prime_UTR 40.0%
CTATCTTCTTATCCGGATGG+TGG - chr3_3:3772742-3772761 Msa0438990:three_prime_UTR 45.0%
GGAGAAGAAAGGTAACGTGA+AGG + chr3_3:3772911-3772930 None:intergenic 45.0%
AAGGGTTGGAAGGAGAAGAA+AGG + chr3_3:3772922-3772941 None:intergenic 45.0%
! GAGAGAGAGTGTGAATGGAA+GGG + chr3_3:3772940-3772959 None:intergenic 45.0%
! AGAGAGAGAGTGTGAATGGA+AGG + chr3_3:3772941-3772960 None:intergenic 45.0%
! GGTTAGAGAGAGAGTGTGAA+TGG + chr3_3:3772945-3772964 None:intergenic 45.0%
GTAGCACAAAGGGAAAGTCT+AGG - chr3_3:3773111-3773130 Msa0438990:CDS 45.0%
GCATCAGTGTTTATGTCAGC+AGG + chr3_3:3773332-3773351 None:intergenic 45.0%
TAAACACTGATGCGACCGTT+TGG - chr3_3:3773339-3773358 Msa0438990:CDS 45.0%
AAACACTGATGCGACCGTTT+GGG - chr3_3:3773340-3773359 Msa0438990:CDS 45.0%
TTTCCATAAGCTCCCCCAAA+CGG + chr3_3:3773357-3773376 None:intergenic 45.0%
! TTCTAAAGAAAGCCAGAGGC+CGG - chr3_3:3773914-3773933 Msa0438990:CDS 45.0%
! TACCCTTTTGCTGCGATAGT+AGG - chr3_3:3773939-3773958 Msa0438990:CDS 45.0%
GTCCTACTATCGCAGCAAAA+GGG + chr3_3:3773944-3773963 None:intergenic 45.0%
TGTCCTACTATCGCAGCAAA+AGG + chr3_3:3773945-3773964 None:intergenic 45.0%
! TTTTGCTGCGATAGTAGGAC+AGG - chr3_3:3773944-3773963 Msa0438990:CDS 45.0%
ATTATGGGGGATAGAGGAAC+AGG - chr3_3:3774026-3774045 Msa0438990:intron 45.0%
TTATGGGGGATAGAGGAACA+GGG - chr3_3:3774027-3774046 Msa0438990:intron 45.0%
CAGGGAAATCAACTACGGTT+AGG - chr3_3:3774045-3774064 Msa0438990:intron 45.0%
CCATGACTTCTGGATCTTCT+GGG + chr3_3:3774130-3774149 None:intergenic 45.0%
CCAGAAGATCCAGAAGTCAT+GGG - chr3_3:3774128-3774147 Msa0438990:intron 45.0%
TTGTTGGATTCTGCTGCATC+AGG - chr3_3:3774389-3774408 Msa0438990:intron 45.0%
TTTCTATCTCGCATCCTGCT+CGG - chr3_3:3774438-3774457 Msa0438990:intron 45.0%
GTTCGGGAAATCCTGAAGAA+GGG - chr3_3:3774474-3774493 Msa0438990:intron 45.0%
TTCGGGAAATCCTGAAGAAG+GGG - chr3_3:3774475-3774494 Msa0438990:intron 45.0%
TTGGAATGCATGCTCAAGTC+GGG - chr3_3:3774525-3774544 Msa0438990:intron 45.0%
GCTGAGAGTGAAGATTGTAG+AGG - chr3_3:3774565-3774584 Msa0438990:intron 45.0%
AGATTGTAGAGGAGAGAGCT+AGG - chr3_3:3774576-3774595 Msa0438990:intron 45.0%
CAGATCAAATTACCTCGGCA+AGG - chr3_3:3774657-3774676 Msa0438990:intron 45.0%
TGTGCAGAGTTGAATGTGGA+TGG - chr3_3:3774737-3774756 Msa0438990:intron 45.0%
AAGAGACCAAGTGACTGTAG+AGG - chr3_3:3774817-3774836 Msa0438990:CDS 45.0%
CTTGAGACACCGTCTTAGAA+AGG - chr3_3:3774865-3774884 Msa0438990:intron 45.0%
CCGTCTTAGAAAGGATCCAT+TGG - chr3_3:3774874-3774893 Msa0438990:intron 45.0%
GCAGATGGCATGCTTCCTAT+TGG + chr3_3:3772772-3772791 None:intergenic 50.0%
GTGTGAATGGAAGGGTTGGA+AGG + chr3_3:3772932-3772951 None:intergenic 50.0%
! GAGAGTGTGAATGGAAGGGT+TGG + chr3_3:3772936-3772955 None:intergenic 50.0%
CACACTCTCTCTCTAACCTC+AGG - chr3_3:3772947-3772966 Msa0438990:three_prime_UTR 50.0%
AACACTGATGCGACCGTTTG+GGG - chr3_3:3773341-3773360 Msa0438990:CDS 50.0%
! ATCGCAGCAAAAGGGTACAC+CGG + chr3_3:3773936-3773955 None:intergenic 50.0%
CCCAGAAGATCCAGAAGTCA+TGG - chr3_3:3774127-3774146 Msa0438990:intron 50.0%
CCCATGACTTCTGGATCTTC+TGG + chr3_3:3774131-3774150 None:intergenic 50.0%
ACTTCGACTCCCATGACTTC+TGG + chr3_3:3774140-3774159 None:intergenic 50.0%
GCTACAGAAGATAGGGTGTG+TGG - chr3_3:3774236-3774255 Msa0438990:intron 50.0%
TGGATTCTGCTGCATCAGGT+TGG - chr3_3:3774393-3774412 Msa0438990:intron 50.0%
!! TGCATCAGGTTGGAACACAG+TGG - chr3_3:3774403-3774422 Msa0438990:intron 50.0%
TTGGAACACAGTGGAGAGAG+AGG - chr3_3:3774412-3774431 Msa0438990:intron 50.0%
TGGAACACAGTGGAGAGAGA+GGG - chr3_3:3774413-3774432 Msa0438990:intron 50.0%
GGTTCGGGAAATCCTGAAGA+AGG - chr3_3:3774473-3774492 Msa0438990:intron 50.0%
ATGCTCAAGTCGGGACTGTT+AGG - chr3_3:3774534-3774553 Msa0438990:intron 50.0%
TGCTCAAGTCGGGACTGTTA+GGG - chr3_3:3774535-3774554 Msa0438990:intron 50.0%
AGAGACTTACAAAGCCGAGC+AGG - chr3_3:3774625-3774644 Msa0438990:intron 50.0%
ATCTGTGAGCTTCTCCTGCT+CGG + chr3_3:3774642-3774661 None:intergenic 50.0%
!! CGAAAGTATCTTCCTTGCCG+AGG + chr3_3:3774672-3774691 None:intergenic 50.0%
GGTGTGTGCAGAGTTGAATG+TGG - chr3_3:3774733-3774752 Msa0438990:intron 50.0%
GACGGTGTCTCAAGCAGTTA+GGG + chr3_3:3774859-3774878 None:intergenic 50.0%
AGACGGTGTCTCAAGCAGTT+AGG + chr3_3:3774860-3774879 None:intergenic 50.0%
!! CTTCTTATCCGGATGGTGGG+AGG - chr3_3:3772746-3772765 Msa0438990:three_prime_UTR 55.0%
ACACTGATGCGACCGTTTGG+GGG - chr3_3:3773342-3773361 Msa0438990:CDS 55.0%
!! AGCTCTCACTGAGGGTGTCA+AGG - chr3_3:3774277-3774296 Msa0438990:intron 55.0%
! GGTGTCAAGGCATTTGAGCC+TGG - chr3_3:3774290-3774309 Msa0438990:intron 55.0%
ATCCTGAAGAAGGGGAGCTC+AGG - chr3_3:3774483-3774502 Msa0438990:intron 55.0%
! CCTATTGGCCTCCCACCATC+CGG + chr3_3:3772757-3772776 None:intergenic 60.0%
CGACCGTTTGGGGGAGCTTA+TGG - chr3_3:3773351-3773370 Msa0438990:CDS 60.0%
! CAAAAGGGTACACCGGCCTC+TGG + chr3_3:3773929-3773948 None:intergenic 60.0%
!! CCGGATGGTGGGAGGCCAAT+AGG - chr3_3:3772754-3772773 Msa0438990:three_prime_UTR 65.0%
GGCCTGAGCTCCCCTTCTTC+AGG + chr3_3:3774488-3774507 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 3772683 3775239 3772683 ID=Msa0438990;Name=Msa0438990
chr3_3 mRNA 3772683 3775239 3772683 ID=Msa0438990-mRNA-1;Parent=Msa0438990;Name=Msa0438990-mRNA-1;_AED=0.03;_eAED=0.03;_QI=183|1|1|1|1|1|3|287|421
chr3_3 exon 3772683 3774022 3772683 ID=Msa0438990-mRNA-1:exon:941;Parent=Msa0438990-mRNA-1
chr3_3 exon 3774744 3774853 3774744 ID=Msa0438990-mRNA-1:exon:940;Parent=Msa0438990-mRNA-1
chr3_3 exon 3774954 3775239 3774954 ID=Msa0438990-mRNA-1:exon:939;Parent=Msa0438990-mRNA-1
chr3_3 five_prime_UTR 3775057 3775239 3775057 ID=Msa0438990-mRNA-1:five_prime_utr;Parent=Msa0438990-mRNA-1
chr3_3 CDS 3774954 3775056 3774954 ID=Msa0438990-mRNA-1:cds;Parent=Msa0438990-mRNA-1
chr3_3 CDS 3774744 3774853 3774744 ID=Msa0438990-mRNA-1:cds;Parent=Msa0438990-mRNA-1
chr3_3 CDS 3772970 3774022 3772970 ID=Msa0438990-mRNA-1:cds;Parent=Msa0438990-mRNA-1
chr3_3 three_prime_UTR 3772683 3772969 3772683 ID=Msa0438990-mRNA-1:three_prime_utr;Parent=Msa0438990-mRNA-1
Gene Sequence

>Msa0438990

ATGTCTTCAACAACACTAGGCACTTCTTCCATTGCATTTCTTCCTTCACGTTACCTTTCTTCTCCTTCCAACCCTTCCATTCACACTCTCTCTCTAACCTCAGGGCAAAACTGTAGTAGAAAGCTTTATGGAGGAATTGGAATTAGTAGCACAAAGGGAAAGTCTAGGTTCCCTGTTGTTAATGTTGCCACTGAAGTTAACTCTGTAGAACAGAGTCTGAATACTATTTCTAAAGAAAGCCAGAGGCCGGTGTACCCTTTTGCTGCGATAGTAGGACAGGATGAGATGAAACTTTGTCTTCTCCTTAACGTGATTGATCCAAAGATTGGAGGTGTAATGATTATGGGGGATAGAGGAACAGGGAAATCAACTACGGTTAGGTCATTGGTCGATTTACTTCCTGAAATTAAGGTTGTTTTTGGTGATCCATATAACTCAGACCCAGAAGATCCAGAAGTCATGGGAGTCGAAGTGAGAGATCGAGTTATAAAAGGGGAGCAACTTTCCATTGTGTTGAGCAAAATCAACATGGTTGATTTGCCATTAGGAGCTACAGAAGATAGGGTGTGTGGAACAATCGACATTGAAAAAGCTCTCACTGAGGGTGTCAAGGCATTTGAGCCTGGACTATTAGCTAAAGCTAATAGAGGAATCTTATATGTTGATGAAGTTAATCTTTTGGATGATCACTTGGTTGATGTGTTGTTGGATTCTGCTGCATCAGGTTGGAACACAGTGGAGAGAGAGGGTATTTCTATCTCGCATCCTGCTCGGTTTATCTTAATTGGTTCGGGAAATCCTGAAGAAGGGGAGCTCAGGCCACAACTATTAGATAGATTTGGAATGCATGCTCAAGTCGGGACTGTTAGGGATGCTGAGCTGAGAGTGAAGATTGTAGAGGAGAGAGCTAGGTTTGACAAGAATCCAAAGGAATTTCGAGAGACTTACAAAGCCGAGCAGGAGAAGCTCACAGATCAAATTACCTCGGCAAGGAAGATACTTTCGTCTGTCCAAATTGATCAAGATCTCAAGGTGAAAATCTCTAGGGTGTGTGCAGAGTTGAATGTGGATGGATTGAGAGGAGACATAGTATCAAACAGAGCTGCTAAAGCTTTGGCTGCTCTTAAGGGAAGAGACCAAGTGACTGTAGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGTCTTAGAAAGGATCCATTGGAGTCAATAGATTCAGGTTTACTTGTTACAGAGAAATTTTATGAAGTATTCAGCTGA

Protein sequence

>Msa0438990

MSSTTLGTSSIAFLPSRYLSSPSNPSIHTLSLTSGQNCSRKLYGGIGISSTKGKSRFPVVNVATEVNSVEQSLNTISKESQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVFGDPYNSDPEDPEVMGVEVRDRVIKGEQLSIVLSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRETYKAEQEKLTDQITSARKILSSVQIDQDLKVKISRVCAELNVDGLRGDIVSNRAAKALAALKGRDQVTVEDIATVIPNCLRHRLRKDPLESIDSGLLVTEKFYEVFS*