AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034420 MtrunA17_Chr1g0196471 97.131 732 21 0 10 741 1 732 0.0 1459
Msa0034420 MtrunA17_Chr2g0286891 33.844 783 395 20 71 737 102 877 5.06e-112 360
Msa0034420 MtrunA17_Chr1g0149201 86.842 76 10 0 125 200 1 76 2.86e-37 134
Msa0034420 MtrunA17_Chr4g0054731 27.136 398 268 6 357 733 334 730 4.95e-31 130
Msa0034420 MtrunA17_Chr4g0054731 32.584 178 77 6 52 207 64 220 1.05e-14 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034420 AT1G03365.1 36.307 807 408 21 21 737 29 819 6.26e-128 400
Msa0034420 AT1G03365.2 36.307 807 408 21 21 737 29 819 6.26e-128 400
Msa0034420 AT4G03000.1 34.701 804 416 22 21 737 30 811 1.96e-120 380
Msa0034420 AT4G03000.2 34.701 804 416 22 21 737 30 811 1.96e-120 380
Msa0034420 AT4G03000.4 32.905 623 326 19 21 573 30 630 1.85e-72 248
Msa0034420 AT4G03000.6 32.905 623 326 19 21 573 30 630 1.85e-72 248
Msa0034420 AT4G03000.5 32.905 623 326 19 21 573 30 630 2.51e-72 250
Msa0034420 AT4G03000.3 32.905 623 326 19 21 573 30 630 3.17e-72 249
Msa0034420 AT2G35330.1 29.480 346 222 4 406 733 390 731 2.05e-34 140
Msa0034420 AT2G35330.1 35.632 174 85 6 56 220 86 241 3.46e-17 86.7
Msa0034420 AT2G35330.2 29.480 346 222 4 406 733 363 704 2.55e-34 140
Msa0034420 AT2G35330.2 35.632 174 85 6 56 220 59 214 2.60e-17 87.0
Msa0034420 AT1G32530.1 27.326 344 228 6 408 733 365 704 2.28e-25 112
Msa0034420 AT1G32530.1 32.075 159 93 4 57 206 46 198 2.36e-12 70.9

Find 216 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTGATGTAAACTCTTTA+TGG 0.161953 1_1:-62398352 None:intergenic
CACAGATGGAGTACTTATTT+TGG 0.170025 1_1:-62401102 None:intergenic
TAGATATAGACTTTCCTTAA+TGG 0.209132 1_1:+62401380 Msa0034420:exon
TCGTCTTTCGCTGTGGGTTT+TGG 0.209418 1_1:-62395958 None:intergenic
ATCAAGAAGGTTGTTGATTT+AGG 0.243477 1_1:+62397867 Msa0034420:CDS
GAAGGTCATTTACACCATTA+TGG 0.248027 1_1:+62401460 Msa0034420:three_prime_UTR
AGCTTCGATTCAGCGGAATT+AGG 0.251314 1_1:+62397720 Msa0034420:CDS
CTACTGCTGCCCAAGAAATT+TGG 0.257158 1_1:-62401360 None:intergenic
GGACTTACTGATGAGTAATT+TGG 0.257637 1_1:+62397824 Msa0034420:CDS
GTAGGACCACCATCGAATTT+AGG 0.260424 1_1:+62401330 Msa0034420:CDS
CACTTCTTCCATACTCATTC+TGG 0.283048 1_1:+62399027 Msa0034420:CDS
TTCACGATTCCTATCCATTA+AGG 0.283232 1_1:-62401394 None:intergenic
CACTTCAAGGTGAAGTAATA+TGG 0.284165 1_1:-62401880 None:intergenic
AGGATTCATGCCAAATTTCT+TGG 0.286335 1_1:+62401350 Msa0034420:CDS
TACCTGCATAACCTTCTTAT+TGG 0.286548 1_1:-62398846 None:intergenic
CTTGCCCAAAGCCTCATTAA+AGG 0.287064 1_1:-62398729 None:intergenic
TATTCCCTTTAATGAGGCTT+TGG 0.297007 1_1:+62398724 Msa0034420:CDS
GACTGAACATTTAACTTTGA+TGG 0.306629 1_1:-62398233 None:intergenic
GGTGCGGCTGATGGTGGTAT+TGG 0.311045 1_1:-62395918 None:intergenic
CCTTCATCCCTTGCTTCTCA+TGG 0.314057 1_1:-62401295 None:intergenic
ATTACAGGGTAGAGTGAAAA+AGG 0.314098 1_1:+62400890 Msa0034420:intron
GGCAAAGCGGGTGTTAAATT+AGG 0.314606 1_1:+62398416 Msa0034420:CDS
CTTTGCCTCCAGAATGAGTA+TGG 0.314804 1_1:-62399035 None:intergenic
TTGCGGATTTGTAAATTCAT+AGG 0.322883 1_1:-62397697 None:intergenic
AATATCACAGAGAAACTTGA+TGG 0.324670 1_1:+62401654 Msa0034420:three_prime_UTR
TTTACACATAATTGTCTCTA+AGG 0.328056 1_1:-62401612 None:intergenic
GCTTCGATTCAGCGGAATTA+GGG 0.329207 1_1:+62397721 Msa0034420:CDS
CCCCACCCTCACCCCAAAAT+AGG 0.330949 1_1:+62401545 Msa0034420:three_prime_UTR
CCCGCTTTGCCACAAGCTTT+AGG 0.332600 1_1:-62398404 None:intergenic
CCACCACTCAGTTGACCTTC+TGG 0.338744 1_1:-62398170 None:intergenic
TTCCACCAGCTGGTTTGTCT+TGG 0.343705 1_1:-62401169 None:intergenic
TTTGTTCCTGCAGGCTTGTC+AGG 0.343757 1_1:+62401826 Msa0034420:three_prime_UTR
GTGCGGCTGATGGTGGTATT+GGG 0.343901 1_1:-62395917 None:intergenic
TAGATTCTGATTTACTTTCC+TGG 0.344878 1_1:-62398301 None:intergenic
TCCACCAGCTGGTTTGTCTT+GGG 0.350976 1_1:-62401168 None:intergenic
AGAGATGCTCGGTGTACTTC+GGG 0.351988 1_1:+62398067 Msa0034420:CDS
GCAGTTACTGCATTATAGTT+TGG 0.354061 1_1:+62398043 Msa0034420:CDS
CGCTTCAATCTTCCACCAGC+TGG 0.354227 1_1:-62401179 None:intergenic
ATCTCGAGCACAAGAATTGC+AGG 0.366277 1_1:+62398796 Msa0034420:CDS
TTTGGGTATTACAAGGGTTA+GGG 0.369047 1_1:-62395940 None:intergenic
TCCGCTGAATCGAAGCTTTG+CGG 0.370291 1_1:-62397714 None:intergenic
TATTATAATGGCTGAAGAAA+TGG 0.381498 1_1:+62397563 Msa0034420:CDS
ATTCCCTTTAATGAGGCTTT+GGG 0.387334 1_1:+62398725 Msa0034420:CDS
AAGAGTTTACATCAGTGCTT+AGG 0.388024 1_1:+62398357 Msa0034420:CDS
TCTTCAATGGTTACCGAAGA+TGG 0.388812 1_1:+62397645 Msa0034420:CDS
TATTATTACTATGCACTTCA+AGG 0.395160 1_1:-62401893 None:intergenic
TTTGCAGCGCTACCTCCTTC+GGG 0.396787 1_1:-62398593 None:intergenic
TGAAGCAATGTGGGAGTTGC+TGG 0.403989 1_1:+62398115 Msa0034420:CDS
CAGTCAAGAAATGGCTGAAA+TGG 0.412394 1_1:+62397896 Msa0034420:CDS
AATGTTCAGTCTGATATGAT+TGG 0.413548 1_1:+62398245 Msa0034420:CDS
CATTGCTTCAGTTACTGTTA+AGG 0.415267 1_1:-62398102 None:intergenic
GATAGACAAGGGTATTATAA+TGG 0.415815 1_1:+62397551 Msa0034420:CDS
ACTGAACATTTAACTTTGAT+GGG 0.418576 1_1:-62398232 None:intergenic
TTGCATCAGGAGATAGAAAA+GGG 0.421960 1_1:+62399235 Msa0034420:CDS
ATAAAATGTAGCAGCCATAA+TGG 0.423399 1_1:-62401474 None:intergenic
TTGTACAGAAGAACAACATT+TGG 0.424492 1_1:+62397752 Msa0034420:CDS
CACACTTAAGGAACCATCTT+CGG 0.424685 1_1:-62397658 None:intergenic
CAACACACTGAATACTTTGA+AGG 0.424983 1_1:+62397974 Msa0034420:CDS
AGGTGCAAAGCTGGAATGAC+TGG 0.426147 1_1:+62398822 Msa0034420:CDS
CCCAAATAGTAGAGTAGAAA+CGG 0.427573 1_1:+62395836 None:intergenic
GATTCAGCGGAATTAGGGTT+AGG 0.429023 1_1:+62397726 Msa0034420:CDS
TCATGGAGCTCATTGCAATT+CGG 0.431116 1_1:-62401278 None:intergenic
CAACCGACCTCTCCTCTGAT+AGG 0.432294 1_1:-62401223 None:intergenic
TGCAGGATGAGGTGCAAAGC+TGG 0.432702 1_1:+62398813 Msa0034420:CDS
AGATTCTGATTTACTTTCCT+GGG 0.435378 1_1:-62398300 None:intergenic
GAAATCATCCTCCACACTTA+AGG 0.438705 1_1:-62397670 None:intergenic
AGATAAGCTTCGCAAGCTTC+AGG 0.443538 1_1:+62398871 Msa0034420:CDS
ATTCTCCTCTTCCGCTCAAA+AGG 0.445328 1_1:+62398682 Msa0034420:CDS
TTGCCCAAAGCCTCATTAAA+GGG 0.446677 1_1:-62398728 None:intergenic
TGTACAGAAGAACAACATTT+GGG 0.449983 1_1:+62397753 Msa0034420:CDS
CTTGCATCAGGAGATAGAAA+AGG 0.452299 1_1:+62399234 Msa0034420:CDS
AGATGATGAGTCTTCTTCAA+TGG 0.452751 1_1:+62397632 Msa0034420:CDS
ACAAAAGGAGTTAGTATAGC+AGG 0.455522 1_1:+62398533 Msa0034420:CDS
TGGCTGAAATGGCCGTTTCA+AGG 0.456420 1_1:+62397907 Msa0034420:CDS
GGATTCATGCCAAATTTCTT+GGG 0.458310 1_1:+62401351 Msa0034420:CDS
CCAAATAGTAGAGTAGAAAC+GGG 0.459460 1_1:+62395837 None:intergenic
CCTAAAGCTTGTGGCAAAGC+GGG 0.460953 1_1:+62398404 Msa0034420:CDS
GCGGAAGAGGAGAATGGCTT+AGG 0.464954 1_1:-62398674 None:intergenic
ACCTTCAAAATGAACCTCCT+TGG 0.467142 1_1:-62401443 None:intergenic
CAAGCCTGCAGGAACAAAAC+AGG 0.472136 1_1:-62401821 None:intergenic
TGCTGGTATTCCCTTTAATG+AGG 0.474949 1_1:+62398718 Msa0034420:CDS
AGGGTTAGGGGTGCGGCTGA+TGG 0.477914 1_1:-62395927 None:intergenic
TATTACAAGGGTTAGGGGTG+CGG 0.478734 1_1:-62395934 None:intergenic
GTAGATGTTGCATCCTTTGT+GGG 0.480943 1_1:-62398620 None:intergenic
TTCTGATTTGGAACTTCAGA+TGG 0.484458 1_1:-62398488 None:intergenic
AAGGTTCAAAATTACTGTGC+TGG 0.484913 1_1:+62398701 Msa0034420:CDS
AATCATCATTGGTTGAAATA+CGG 0.485214 1_1:-62398562 None:intergenic
AATTCCACATACCTCAGTAT+TGG 0.485452 1_1:-62399272 None:intergenic
AAAGTTAGCTAACTTGCATC+AGG 0.490897 1_1:+62399222 Msa0034420:CDS
ATAGACTTTCCTTAATGGAT+AGG 0.492112 1_1:+62401385 Msa0034420:three_prime_UTR
TGCGGATTTGTAAATTCATA+GGG 0.493953 1_1:-62397696 None:intergenic
GGAAAGCTTACAAGCGTAAG+TGG 0.494729 1_1:+62398437 Msa0034420:CDS
AGAGTTTACATCAGTGCTTA+GGG 0.496266 1_1:+62398358 Msa0034420:CDS
TGTTCGTCCTTCTCATCCCG+TGG 0.502489 1_1:-62398758 None:intergenic
ACAAGCCCAGTCGTGGAAAA+CGG 0.503942 1_1:+62399159 Msa0034420:CDS
AGGAGGCTACAGTCAAGAAA+TGG 0.504693 1_1:+62397887 Msa0034420:CDS
AAATCTGAGACGGTGACGAC+GGG 0.504966 1_1:+62401140 Msa0034420:CDS
GGGTAAAGCTGAATCATCAT+TGG 0.505790 1_1:-62398573 None:intergenic
CCATGAGAAGCAAGGGATGA+AGG 0.505923 1_1:+62401295 Msa0034420:CDS
TAGAGATGCTCGGTGTACTT+CGG 0.506295 1_1:+62398066 Msa0034420:CDS
AAAACTGTTGGTTCTGAACA+AGG 0.506590 1_1:+62397588 Msa0034420:CDS
AGTAGATGTTGCATCCTTTG+TGG 0.507886 1_1:-62398621 None:intergenic
AACACACTGAATACTTTGAA+GGG 0.509898 1_1:+62397975 Msa0034420:CDS
CGTGGCTCCTCAAATACAAA+AGG 0.515636 1_1:+62398518 Msa0034420:CDS
TGATTTGGAACTTCAGATGG+TGG 0.515862 1_1:-62398485 None:intergenic
GCTGTGCTAAGACTAAAATC+TGG 0.520602 1_1:+62401077 Msa0034420:CDS
AGGGTCTCCTTCTGTGTACA+AGG 0.521448 1_1:-62397934 None:intergenic
AAGAAGGTTGTTGATTTAGG+AGG 0.522918 1_1:+62397870 Msa0034420:CDS
TCCGCAAAGCTTCGATTCAG+CGG 0.523570 1_1:+62397713 Msa0034420:CDS
CACAAAACCTGATGCGCACA+TGG 0.524231 1_1:-62401254 None:intergenic
GGCAAGTTATCAACAAGCAC+TGG 0.524731 1_1:+62399114 Msa0034420:CDS
AAGGTACCTGGTTGTGATGA+TGG 0.526218 1_1:-62396043 None:intergenic
GTTAGGGGTGCGGCTGATGG+TGG 0.527350 1_1:-62395924 None:intergenic
GGCCAATAAGAAGGTTATGC+AGG 0.527394 1_1:+62398844 Msa0034420:CDS
TGCTTCAGTTACTGTTAAGG+AGG 0.527494 1_1:-62398099 None:intergenic
GAAGAAATGGATAAAACTGT+TGG 0.535165 1_1:+62397576 Msa0034420:CDS
AGGTGAAGTAATATGGATTG+TGG 0.535399 1_1:-62401873 None:intergenic
TTGGGTATTACAAGGGTTAG+GGG 0.536017 1_1:-62395939 None:intergenic
TTCACTTTGATCTTTGCTCA+AGG 0.538653 1_1:+62396248 Msa0034420:five_prime_UTR
ACTAGCTGCCTTCTTTCTGA+CGG 0.543071 1_1:-62401006 None:intergenic
TGAAGATTGGAAGGATCCTA+TGG 0.544100 1_1:+62397788 Msa0034420:CDS
TCGATGGTGGTCCTACATGA+AGG 0.545025 1_1:-62401323 None:intergenic
GGAGGATGCCGTCAGAAAGA+AGG 0.545930 1_1:+62400998 Msa0034420:CDS
GTCGTTGGCTGAAAAGTCAA+TGG 0.547386 1_1:+62399093 Msa0034420:CDS
GAATGACTGGGCCAATAAGA+AGG 0.549315 1_1:+62398835 Msa0034420:CDS
AGCTGGTGGAAGATTGAAGC+GGG 0.553151 1_1:+62401181 Msa0034420:CDS
GAAGGCAGCTAGTCAACTGC+AGG 0.553567 1_1:+62401016 Msa0034420:CDS
GGCTCCCAAGACAAACCAGC+TGG 0.554984 1_1:+62401164 Msa0034420:CDS
CGAAGATGGTTCCTTAAGTG+TGG 0.556725 1_1:+62397659 Msa0034420:CDS
GTACAAGGACTTCCTTGAAA+CGG 0.565468 1_1:-62397919 None:intergenic
GCTTCAGTTACTGTTAAGGA+GGG 0.567510 1_1:-62398098 None:intergenic
GTTTATCCCACGGGATGAGA+AGG 0.567819 1_1:+62398751 Msa0034420:CDS
GGCATGAATCCTAAATTCGA+TGG 0.569361 1_1:-62401339 None:intergenic
GTGTGCTCGAGGTTGAAGAT+TGG 0.571035 1_1:+62397775 Msa0034420:CDS
AGCACAAGAATTGCAGGATG+AGG 0.572239 1_1:+62398802 Msa0034420:CDS
CAGAATGAGTATGGAAGAAG+TGG 0.572958 1_1:-62399026 None:intergenic
TAGTCAACTGCAGGAATATG+TGG 0.573830 1_1:+62401025 Msa0034420:CDS
TAGAAGAGAATGCTGAGAAG+AGG 0.574213 1_1:+62398951 Msa0034420:CDS
TTTGGGCAAGTTTATCCCAC+GGG 0.575708 1_1:+62398742 Msa0034420:CDS
AACAGTAACTGAAGCAATGT+GGG 0.577399 1_1:+62398106 Msa0034420:CDS
CTGAATACTTTGAAGGGGAA+AGG 0.578346 1_1:+62397981 Msa0034420:CDS
CTTTGGGCAAGTTTATCCCA+CGG 0.580478 1_1:+62398741 Msa0034420:CDS
GTTCGTCCTTCTCATCCCGT+GGG 0.582182 1_1:-62398757 None:intergenic
CACCAACTCTTTCTCTAGCA+AGG 0.583844 1_1:-62399062 None:intergenic
ATGAAAGAACCTAAAGCTTG+TGG 0.584438 1_1:+62398395 Msa0034420:CDS
GCTTGTCAGGTTGTTATGTG+TGG 0.585618 1_1:+62401839 Msa0034420:three_prime_UTR
TATAGTTTGGTAGAGATGCT+CGG 0.585826 1_1:+62398056 Msa0034420:CDS
TCCTATGGCAACTCAGCTTG+AGG 0.585966 1_1:+62397803 Msa0034420:CDS
ACAACATTTGGGTGTGCTCG+AGG 0.585997 1_1:+62397764 Msa0034420:CDS
TGAAGGAATGCCCTTCATGT+AGG 0.589860 1_1:+62401312 Msa0034420:CDS
CTGAACATTTAACTTTGATG+GGG 0.589971 1_1:-62398231 None:intergenic
CAAAATAAGTACTCCATCTG+TGG 0.591010 1_1:+62401103 Msa0034420:CDS
CAGCATGGTAAAGCTAGAGA+AGG 0.592676 1_1:+62401049 Msa0034420:CDS
GAAATCTGAGACGGTGACGA+CGG 0.593570 1_1:+62401139 Msa0034420:CDS
ATGAGCTCCATGAGAAGCAA+GGG 0.594437 1_1:+62401288 Msa0034420:CDS
CTCACTCACTCAAACACACA+TGG 0.595985 1_1:-62396003 None:intergenic
TAACAACCTGACAAGCCTGC+AGG 0.597310 1_1:-62401832 None:intergenic
AGGAAGTCCTTGTACACAGA+AGG 0.597559 1_1:+62397927 Msa0034420:CDS
TCTGAGACGGTGACGACGGG+GGG 0.600103 1_1:+62401143 Msa0034420:CDS
AACTTTCACAAATATCTCCC+AGG 0.600719 1_1:+62398283 Msa0034420:CDS
ACACGAGTCATTTCACCAGA+AGG 0.600907 1_1:+62398155 Msa0034420:CDS
TAAAGTATGCAGCCTGTGCG+AGG 0.601463 1_1:-62400935 None:intergenic
GTTGGTGTCTGCTAAGTCGT+TGG 0.602233 1_1:+62399078 Msa0034420:CDS
AAGTGGTGCAGTTAGTTCAG+AGG 0.606670 1_1:+62401415 Msa0034420:three_prime_UTR
CTATTCAACAAGCCCAGTCG+TGG 0.607936 1_1:+62399152 Msa0034420:CDS
AAGAAACAAGTGAAATAGAA+CGG 0.608270 1_1:-62401736 None:intergenic
TGTAGACAATATTTGTGAGA+GGG 0.609208 1_1:-62397953 None:intergenic
CGCTGCAAAATTACCCACAA+AGG 0.609619 1_1:+62398607 Msa0034420:CDS
GATTCAGCTTTACCCGAAGG+AGG 0.610637 1_1:+62398581 Msa0034420:CDS
GGATTTGTAAATTCATAGGG+AGG 0.614022 1_1:-62397693 None:intergenic
GTCCTTGCTAGAGAAAGAGT+TGG 0.614761 1_1:+62399060 Msa0034420:CDS
AATGAGCTCCATGAGAAGCA+AGG 0.618473 1_1:+62401287 Msa0034420:CDS
GCTCGAGGTTGAAGATTGGA+AGG 0.618729 1_1:+62397779 Msa0034420:CDS
CTCTGAAGTGGAGAATGCCA+TGG 0.618759 1_1:+62398976 Msa0034420:CDS
GCAGGAATATGTGGACAGCA+TGG 0.623496 1_1:+62401034 Msa0034420:CDS
TGAGAAGAGGATCTCTGAAG+TGG 0.625673 1_1:+62398964 Msa0034420:CDS
CGATGGTGGTCCTACATGAA+GGG 0.627258 1_1:-62401322 None:intergenic
AGCACTCATGAAAGCTGAGG+AGG 0.628540 1_1:+62400980 Msa0034420:CDS
TCCTCAAGCTGAGTTGCCAT+AGG 0.629481 1_1:-62397804 None:intergenic
TCCCAAGACAAACCAGCTGG+TGG 0.630501 1_1:+62401167 Msa0034420:CDS
GATGATTCAGCTTTACCCGA+AGG 0.631923 1_1:+62398578 Msa0034420:CDS
ATCTGAGACGGTGACGACGG+GGG 0.633833 1_1:+62401142 Msa0034420:CDS
TTCTTCCATACTCATTCTGG+AGG 0.633921 1_1:+62399030 Msa0034420:CDS
ACACACTGAATACTTTGAAG+GGG 0.634678 1_1:+62397976 Msa0034420:CDS
AGAAAACAAGAAATCTGAGA+CGG 0.635352 1_1:+62401130 Msa0034420:CDS
CCTTCACCATCATCACAACC+AGG 0.635961 1_1:+62396037 Msa0034420:five_prime_UTR
ACCTAAAGCTTGTGGCAAAG+CGG 0.636840 1_1:+62398403 Msa0034420:CDS
GTGCCTATCAGAGGAGAGGT+CGG 0.640007 1_1:+62401220 Msa0034420:CDS
TAACAGTAACTGAAGCAATG+TGG 0.641192 1_1:+62398105 Msa0034420:CDS
TGAACATTTAACTTTGATGG+GGG 0.642090 1_1:-62398230 None:intergenic
AGATGGTTCCTTAAGTGTGG+AGG 0.645854 1_1:+62397662 Msa0034420:CDS
TAGATGGAGGTGATAGACAA+GGG 0.649015 1_1:+62397540 Msa0034420:intron
TTAGTTCAGAGGATTCTCCA+AGG 0.649177 1_1:+62401426 Msa0034420:three_prime_UTR
TGAAGCACTCATGAAAGCTG+AGG 0.649898 1_1:+62400977 Msa0034420:CDS
GATTTGTAAATTCATAGGGA+GGG 0.650733 1_1:-62397692 None:intergenic
AATCTGAGACGGTGACGACG+GGG 0.653084 1_1:+62401141 Msa0034420:CDS
GTAGATGGAGGTGATAGACA+AGG 0.654637 1_1:+62397539 Msa0034420:intron
TTAAGAGTGAAGCAACGGCA+CGG 0.656353 1_1:+62395862 Msa0034420:five_prime_UTR
AGGTTGTTATGTGTGGCTCA+AGG 0.656529 1_1:+62401846 Msa0034420:three_prime_UTR
AATGGATAGGAATCGTGAAG+TGG 0.657455 1_1:+62401398 Msa0034420:three_prime_UTR
ATGAATCCTAAATTCGATGG+TGG 0.659018 1_1:-62401336 None:intergenic
TCATGTGCCTATCAGAGGAG+AGG 0.661659 1_1:+62401216 Msa0034420:CDS
TTGTAGACAATATTTGTGAG+AGG 0.662345 1_1:-62397954 None:intergenic
GGTGCAAAGCTGGAATGACT+GGG 0.663688 1_1:+62398823 Msa0034420:CDS
CAAATAGTAGAGTAGAAACG+GGG 0.664355 1_1:+62395838 None:intergenic
TAAGCTTCGCAAGCTTCAGG+CGG 0.676302 1_1:+62398874 Msa0034420:CDS
ATGTGTAAATTTCATCACAG+CGG 0.678542 1_1:+62401626 Msa0034420:three_prime_UTR
CCAGAAGGTCAACTGAGTGG+TGG 0.679750 1_1:+62398170 Msa0034420:CDS
TGCATCAGGAGATAGAAAAG+GGG 0.681951 1_1:+62399236 Msa0034420:CDS
CCTGGTTGTGATGATGGTGA+AGG 0.689027 1_1:-62396037 None:intergenic
TCACCAGAAGGTCAACTGAG+TGG 0.694120 1_1:+62398167 Msa0034420:CDS
GTGTGTCATGTGCCTATCAG+AGG 0.697894 1_1:+62401211 Msa0034420:CDS
CAGCTGGTGGAAGATTGAAG+CGG 0.698320 1_1:+62401180 Msa0034420:CDS
CCAAATCAGAAAATGAAACG+TGG 0.702226 1_1:+62398500 Msa0034420:CDS
GTTCAGAGGATTCTCCAAGG+AGG 0.719220 1_1:+62401429 Msa0034420:three_prime_UTR
AAATAGTAGAGTAGAAACGG+GGG 0.747951 1_1:+62395839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGAAAATAATATAATAAA+TGG + chr1_1:62397071-62397090 Msa0034420:intron 10.0%
!! AAATATGAATACAAAAAATT+GGG - chr1_1:62397443-62397462 None:intergenic 10.0%
!! AAAATATGAATACAAAAAAT+TGG - chr1_1:62397444-62397463 None:intergenic 10.0%
!! AAAATAAAAATTTGACTATT+CGG - chr1_1:62399478-62399497 None:intergenic 10.0%
!!! ATAAACTTTTTTTTTTGAAA+CGG - chr1_1:62400339-62400358 None:intergenic 10.0%
!!! AAATTTTTTGATTAGTTTAT+TGG + chr1_1:62400638-62400657 Msa0034420:intron 10.0%
!!! GGTATAATTTTTTTTTTTTG+AGG + chr1_1:62396745-62396764 Msa0034420:intron 15.0%
!!! TTTTTAGATTTACATATACA+TGG + chr1_1:62399494-62399513 Msa0034420:intron 15.0%
!!! TTTATTAGTTTACATATACA+TGG + chr1_1:62399749-62399768 Msa0034420:intron 15.0%
!! GTTTCAAAAAAAAAAGTTTA+TGG + chr1_1:62400338-62400357 Msa0034420:intron 15.0%
!! AGAAAATGAAAAAGGTAAAA+AGG - chr1_1:62396104-62396123 None:intergenic 20.0%
!! CAAAAAATGAGAAAAAGTAA+AGG - chr1_1:62396305-62396324 None:intergenic 20.0%
!!! TTATATCATTTTTCTCAACA+GGG - chr1_1:62396827-62396846 None:intergenic 20.0%
!!! ATTATATCATTTTTCTCAAC+AGG - chr1_1:62396828-62396847 None:intergenic 20.0%
!! CAACCTTTAACAAAAAAATT+GGG - chr1_1:62396941-62396960 None:intergenic 20.0%
!! ACAACCTTTAACAAAAAAAT+TGG - chr1_1:62396942-62396961 None:intergenic 20.0%
!!! TTATTTTCTCAAATAAGTGT+CGG - chr1_1:62397062-62397081 None:intergenic 20.0%
!! ACAACCTTTCATAAAAAATT+GGG - chr1_1:62397163-62397182 None:intergenic 20.0%
!! TACAACCTTTCATAAAAAAT+TGG - chr1_1:62397164-62397183 None:intergenic 20.0%
!! CAAAAAAAATAACGAACAAA+GGG - chr1_1:62397478-62397497 None:intergenic 20.0%
!! ACAAAAAAAATAACGAACAA+AGG - chr1_1:62397479-62397498 None:intergenic 20.0%
!!! ACTTCACAGTTTAATTTTTT+TGG + chr1_1:62399730-62399749 Msa0034420:intron 20.0%
!!! CTTCACAGTTTAATTTTTTT+GGG + chr1_1:62399731-62399750 Msa0034420:intron 20.0%
!!! TTCACAGTTTAATTTTTTTG+GGG + chr1_1:62399987-62400006 Msa0034420:intron 20.0%
!!! AAAAAGTTTATGGTTTTATG+TGG + chr1_1:62400348-62400367 Msa0034420:intron 20.0%
!!! TGATTAGTTTATTGGTTTAT+AGG + chr1_1:62400646-62400665 Msa0034420:intron 20.0%
!!! TATGATTTCTGTTTTTATGA+TGG + chr1_1:62400801-62400820 Msa0034420:intron 20.0%
!!! TCTGTTTTATTTCCTATTTT+GGG - chr1_1:62401560-62401579 None:intergenic 20.0%
!!! TTCTGTTTTATTTCCTATTT+TGG - chr1_1:62401561-62401580 None:intergenic 20.0%
!! TAGCTATTGAAAAATTAAGA+GGG - chr1_1:62401795-62401814 None:intergenic 20.0%
!! ATAGCTATTGAAAAATTAAG+AGG - chr1_1:62401796-62401815 None:intergenic 20.0%
! GAAAAAGGTAAAAAGGAATT+AGG - chr1_1:62396097-62396116 None:intergenic 25.0%
!!! ATACGTTTTGATTTTATCAC+TGG - chr1_1:62396498-62396517 None:intergenic 25.0%
!!! TTTAATTTTCCTCTTGCTAT+TGG - chr1_1:62396643-62396662 None:intergenic 25.0%
!!! GTTCCCAATTTTTTTGTTAA+AGG + chr1_1:62396935-62396954 Msa0034420:intron 25.0%
! TCTACAAATAAACCACAAAA+GGG - chr1_1:62397524-62397543 None:intergenic 25.0%
! ATCTACAAATAAACCACAAA+AGG - chr1_1:62397525-62397544 None:intergenic 25.0%
!! TTTTGTGGTTTATTTGTAGA+TGG + chr1_1:62397524-62397543 Msa0034420:intron 25.0%
! TATTATAATGGCTGAAGAAA+TGG + chr1_1:62397563-62397582 Msa0034420:CDS 25.0%
!! TTTTAGTAATGCTATCAAGA+AGG + chr1_1:62397854-62397873 Msa0034420:CDS 25.0%
!! ACTGAACATTTAACTTTGAT+GGG - chr1_1:62398235-62398254 None:intergenic 25.0%
!! AATCATCATTGGTTGAAATA+CGG - chr1_1:62398565-62398584 None:intergenic 25.0%
!!! TTGCTTTTGATTATTTTCCA+TGG - chr1_1:62398996-62399015 None:intergenic 25.0%
! TAAAAATTTGACTATTCGGA+AGG - chr1_1:62399474-62399493 None:intergenic 25.0%
!!! CTGGTTGAATTCATTTTAAT+TGG - chr1_1:62399659-62399678 None:intergenic 25.0%
!!! CTGGTTGAATTCATTTTAAT+TGG - chr1_1:62399659-62399678 None:intergenic 25.0%
! AAAAAATTACAAGGGGAAAT+CGG - chr1_1:62400258-62400277 None:intergenic 25.0%
! TGGAGAAAAAAAATTACAAG+GGG - chr1_1:62400265-62400284 None:intergenic 25.0%
! GTGGAGAAAAAAAATTACAA+GGG - chr1_1:62400266-62400285 None:intergenic 25.0%
!! GCTTGTTGGTTAATAATATT+TGG + chr1_1:62400313-62400332 Msa0034420:intron 25.0%
! ATATATCATCATTTGTCCTA+TGG - chr1_1:62400601-62400620 None:intergenic 25.0%
! AGTGTCAATTGTAAACAATT+TGG - chr1_1:62400827-62400846 None:intergenic 25.0%
!! ATGTTTTCACCATTTAAGTA+AGG - chr1_1:62400872-62400891 None:intergenic 25.0%
! TTAAATGGTGAAAACATTAC+AGG + chr1_1:62400875-62400894 Msa0034420:intron 25.0%
! TAAATGGTGAAAACATTACA+GGG + chr1_1:62400876-62400895 Msa0034420:intron 25.0%
! TAGATATAGACTTTCCTTAA+TGG + chr1_1:62401380-62401399 Msa0034420:exon 25.0%
!!! CTGTTTTATTTCCTATTTTG+GGG - chr1_1:62401559-62401578 None:intergenic 25.0%
! TTTACACATAATTGTCTCTA+AGG - chr1_1:62401615-62401634 None:intergenic 25.0%
! AAGAAACAAGTGAAATAGAA+CGG - chr1_1:62401739-62401758 None:intergenic 25.0%
AAGGAATTAGGAATCGATAA+TGG - chr1_1:62396085-62396104 None:intergenic 30.0%
GGGTAAAGAGAAAATGAAAA+AGG - chr1_1:62396112-62396131 None:intergenic 30.0%
! TTTTCTCTTTACCCATTTCT+AGG + chr1_1:62396118-62396137 Msa0034420:intron 30.0%
AAGACAAAGAACCTAGAAAT+GGG - chr1_1:62396132-62396151 None:intergenic 30.0%
AAAGACAAAGAACCTAGAAA+TGG - chr1_1:62396133-62396152 None:intergenic 30.0%
! TTTTCTTTCTCTTTCAACAC+AGG + chr1_1:62396202-62396221 Msa0034420:intron 30.0%
AAAAAGTAAAGGAGCAAGTT+GGG - chr1_1:62396294-62396313 None:intergenic 30.0%
TCGACAATTATTTGAGAAAC+AGG + chr1_1:62396426-62396445 Msa0034420:intron 30.0%
CGACAATTATTTGAGAAACA+GGG + chr1_1:62396427-62396446 Msa0034420:intron 30.0%
AAATAACTACCGTATACATG+AGG + chr1_1:62396602-62396621 Msa0034420:intron 30.0%
TATACTATCCTGCAATAAAG+GGG - chr1_1:62396704-62396723 None:intergenic 30.0%
GTATACTATCCTGCAATAAA+GGG - chr1_1:62396705-62396724 None:intergenic 30.0%
AGTATACTATCCTGCAATAA+AGG - chr1_1:62396706-62396725 None:intergenic 30.0%
!! AGTATTGATGCACAAATCAA+CGG - chr1_1:62396976-62396995 None:intergenic 30.0%
!!! GGATCCCAATTTTTTATGAA+AGG + chr1_1:62397156-62397175 Msa0034420:intron 30.0%
ATGAATGAAATCACATGTGT+CGG + chr1_1:62397373-62397392 Msa0034420:intron 30.0%
!! GATAGACAAGGGTATTATAA+TGG + chr1_1:62397551-62397570 Msa0034420:CDS 30.0%
GAAGAAATGGATAAAACTGT+TGG + chr1_1:62397576-62397595 Msa0034420:CDS 30.0%
GATTTGTAAATTCATAGGGA+GGG - chr1_1:62397695-62397714 None:intergenic 30.0%
TGCGGATTTGTAAATTCATA+GGG - chr1_1:62397699-62397718 None:intergenic 30.0%
TTGCGGATTTGTAAATTCAT+AGG - chr1_1:62397700-62397719 None:intergenic 30.0%
TTGTACAGAAGAACAACATT+TGG + chr1_1:62397752-62397771 Msa0034420:CDS 30.0%
TGTACAGAAGAACAACATTT+GGG + chr1_1:62397753-62397772 Msa0034420:CDS 30.0%
!! ATCAAGAAGGTTGTTGATTT+AGG + chr1_1:62397867-62397886 Msa0034420:CDS 30.0%
TGTAGACAATATTTGTGAGA+GGG - chr1_1:62397956-62397975 None:intergenic 30.0%
TTGTAGACAATATTTGTGAG+AGG - chr1_1:62397957-62397976 None:intergenic 30.0%
AACACACTGAATACTTTGAA+GGG + chr1_1:62397975-62397994 Msa0034420:CDS 30.0%
!!! TTTTGAAATACAAAGTCTGC+AGG - chr1_1:62398017-62398036 None:intergenic 30.0%
! TGAACATTTAACTTTGATGG+GGG - chr1_1:62398233-62398252 None:intergenic 30.0%
! CTGAACATTTAACTTTGATG+GGG - chr1_1:62398234-62398253 None:intergenic 30.0%
! GACTGAACATTTAACTTTGA+TGG - chr1_1:62398236-62398255 None:intergenic 30.0%
AATGTTCAGTCTGATATGAT+TGG + chr1_1:62398245-62398264 Msa0034420:CDS 30.0%
AGATTCTGATTTACTTTCCT+GGG - chr1_1:62398303-62398322 None:intergenic 30.0%
TAGATTCTGATTTACTTTCC+TGG - chr1_1:62398304-62398323 None:intergenic 30.0%
! ACTAACTCCTTTTGTATTTG+AGG - chr1_1:62398528-62398547 None:intergenic 30.0%
! GTAATTTTGAACCTTTTGAG+CGG - chr1_1:62398696-62398715 None:intergenic 30.0%
!! AAATTTTCTAGCCAATACTG+AGG + chr1_1:62399261-62399280 Msa0034420:CDS 30.0%
TACCTACTCTATTATTCTGA+CGG + chr1_1:62399387-62399406 Msa0034420:intron 30.0%
!!! TTTTTTAACAGTGAGACTGA+AGG - chr1_1:62399591-62399610 None:intergenic 30.0%
! CATTCCTTTAGATTTTCCAT+AGG + chr1_1:62399686-62399705 Msa0034420:intron 30.0%
TTGTCCTATGGAAAATCTAA+AGG - chr1_1:62399693-62399712 None:intergenic 30.0%
! ATTTTCCATAGGACAAATGA+TGG + chr1_1:62399697-62399716 Msa0034420:intron 30.0%
ATATACCATCATTTGTCCTA+TGG - chr1_1:62399705-62399724 None:intergenic 30.0%
!!! TTTTTTAACAGTGAGACTGA+AGG - chr1_1:62399591-62399610 None:intergenic 30.0%
! CATTCCTTTAGATTTTCCAT+AGG + chr1_1:62399686-62399705 Msa0034420:intron 30.0%
TTGTCCTATGGAAAATCTAA+AGG - chr1_1:62399693-62399712 None:intergenic 30.0%
! ATTTTCCATAGGACAAATGA+TGG + chr1_1:62399697-62399716 Msa0034420:intron 30.0%
ATATACCATCATTTGTCCTA+TGG - chr1_1:62399705-62399724 None:intergenic 30.0%
!!! GGTTTTCTGTTTGTTTTTTG+TGG + chr1_1:62400014-62400033 Msa0034420:intron 30.0%
GGTGGAGAAAAAAAATTACA+AGG - chr1_1:62400267-62400286 None:intergenic 30.0%
ATCTGATTGAGCTAAAGTAT+AGG + chr1_1:62400382-62400401 Msa0034420:intron 30.0%
CAGTTAGTAATTTATCACTC+AGG + chr1_1:62400414-62400433 Msa0034420:intron 30.0%
AAAGTAAAAACAGTATGCAC+AGG - chr1_1:62400444-62400463 None:intergenic 30.0%
! CATTCCTTTAGATTTTCCAT+AGG + chr1_1:62399686-62399705 Msa0034420:intron 30.0%
TTGTCCTATGGAAAATCTAA+AGG - chr1_1:62399693-62399712 None:intergenic 30.0%
ATCTGATTGAGCTAAAGTAT+AGG + chr1_1:62400382-62400401 Msa0034420:intron 30.0%
ATTGAGCTAAAGTATAGGAA+CGG + chr1_1:62400387-62400406 Msa0034420:intron 30.0%
TGAGTCAATAATTATCACTC+AGG + chr1_1:62400715-62400734 Msa0034420:intron 30.0%
AAAGTAAAAACAGTATGCAC+AGG - chr1_1:62400444-62400463 None:intergenic 30.0%
! ATGCTACTTCCTTACTTAAA+TGG + chr1_1:62400860-62400879 Msa0034420:intron 30.0%
AGAAAACAAGAAATCTGAGA+CGG + chr1_1:62401130-62401149 Msa0034420:CDS 30.0%
! ATAGACTTTCCTTAATGGAT+AGG + chr1_1:62401385-62401404 Msa0034420:three_prime_UTR 30.0%
ATAAAATGTAGCAGCCATAA+TGG - chr1_1:62401477-62401496 None:intergenic 30.0%
!! ATGGCTGCTACATTTTATTT+TGG + chr1_1:62401479-62401498 Msa0034420:three_prime_UTR 30.0%
ATGTGTAAATTTCATCACAG+CGG + chr1_1:62401626-62401645 Msa0034420:three_prime_UTR 30.0%
AATATCACAGAGAAACTTGA+TGG + chr1_1:62401654-62401673 Msa0034420:three_prime_UTR 30.0%
!! GGTGGTATTGGGTTTTTATT+AGG - chr1_1:62395909-62395928 None:intergenic 35.0%
TTTGGGTATTACAAGGGTTA+GGG - chr1_1:62395943-62395962 None:intergenic 35.0%
!! TTTTGGGTATTACAAGGGTT+AGG - chr1_1:62395944-62395963 None:intergenic 35.0%
!! TAGGAATCGATAATGGAGTA+AGG - chr1_1:62396078-62396097 None:intergenic 35.0%
TTCACTTTGATCTTTGCTCA+AGG + chr1_1:62396248-62396267 Msa0034420:five_prime_UTR 35.0%
GAAAAAGTAAAGGAGCAAGT+TGG - chr1_1:62396295-62396314 None:intergenic 35.0%
!! CGGTAGTTATTTTCACCTAT+GGG - chr1_1:62396594-62396613 None:intergenic 35.0%
!! ACGGTAGTTATTTTCACCTA+TGG - chr1_1:62396595-62396614 None:intergenic 35.0%
ATACTATCCTGCAATAAAGG+GGG - chr1_1:62396703-62396722 None:intergenic 35.0%
ATTGCAGGATAGTATACTAC+TGG + chr1_1:62396708-62396727 Msa0034420:intron 35.0%
ACTACTGGATAGTATACTAC+TGG + chr1_1:62396723-62396742 Msa0034420:intron 35.0%
CTACTGGATAGTATACTACT+GGG + chr1_1:62396724-62396743 Msa0034420:intron 35.0%
CATAGTTAGGTTTGAGCTAA+GGG - chr1_1:62397282-62397301 None:intergenic 35.0%
ACATAGTTAGGTTTGAGCTA+AGG - chr1_1:62397283-62397302 None:intergenic 35.0%
TATGTCAGTGCTACATAGTT+AGG - chr1_1:62397295-62397314 None:intergenic 35.0%
!!! TAACTGATTTGACCCTTTTG+TGG + chr1_1:62397509-62397528 Msa0034420:intron 35.0%
TGTGGTTTATTTGTAGATGG+AGG + chr1_1:62397527-62397546 Msa0034420:intron 35.0%
!! AAAACTGTTGGTTCTGAACA+AGG + chr1_1:62397588-62397607 Msa0034420:CDS 35.0%
AGATGATGAGTCTTCTTCAA+TGG + chr1_1:62397632-62397651 Msa0034420:CDS 35.0%
GGATTTGTAAATTCATAGGG+AGG - chr1_1:62397696-62397715 None:intergenic 35.0%
GGACTTACTGATGAGTAATT+TGG + chr1_1:62397824-62397843 Msa0034420:CDS 35.0%
!! AAGAAGGTTGTTGATTTAGG+AGG + chr1_1:62397870-62397889 Msa0034420:CDS 35.0%
CAACACACTGAATACTTTGA+AGG + chr1_1:62397974-62397993 Msa0034420:CDS 35.0%
! ACACACTGAATACTTTGAAG+GGG + chr1_1:62397976-62397995 Msa0034420:CDS 35.0%
GCAGTTACTGCATTATAGTT+TGG + chr1_1:62398043-62398062 Msa0034420:CDS 35.0%
TATAGTTTGGTAGAGATGCT+CGG + chr1_1:62398056-62398075 Msa0034420:CDS 35.0%
CATTGCTTCAGTTACTGTTA+AGG - chr1_1:62398105-62398124 None:intergenic 35.0%
TAACAGTAACTGAAGCAATG+TGG + chr1_1:62398105-62398124 Msa0034420:CDS 35.0%
AACAGTAACTGAAGCAATGT+GGG + chr1_1:62398106-62398125 Msa0034420:CDS 35.0%
AACTTTCACAAATATCTCCC+AGG + chr1_1:62398283-62398302 Msa0034420:CDS 35.0%
! GCACTGATGTAAACTCTTTA+TGG - chr1_1:62398355-62398374 None:intergenic 35.0%
AAGAGTTTACATCAGTGCTT+AGG + chr1_1:62398357-62398376 Msa0034420:CDS 35.0%
AGAGTTTACATCAGTGCTTA+GGG + chr1_1:62398358-62398377 Msa0034420:CDS 35.0%
ATGAAAGAACCTAAAGCTTG+TGG + chr1_1:62398395-62398414 Msa0034420:CDS 35.0%
!! TTCTGATTTGGAACTTCAGA+TGG - chr1_1:62398491-62398510 None:intergenic 35.0%
! CCACGTTTCATTTTCTGATT+TGG - chr1_1:62398503-62398522 None:intergenic 35.0%
CCAAATCAGAAAATGAAACG+TGG + chr1_1:62398500-62398519 Msa0034420:CDS 35.0%
ACAAAAGGAGTTAGTATAGC+AGG + chr1_1:62398533-62398552 Msa0034420:CDS 35.0%
!!! GAATGGCTTAGGTTTTGATT+TGG - chr1_1:62398666-62398685 None:intergenic 35.0%
AAGGTTCAAAATTACTGTGC+TGG + chr1_1:62398701-62398720 Msa0034420:CDS 35.0%
TATTCCCTTTAATGAGGCTT+TGG + chr1_1:62398724-62398743 Msa0034420:CDS 35.0%
ATTCCCTTTAATGAGGCTTT+GGG + chr1_1:62398725-62398744 Msa0034420:CDS 35.0%
TACCTGCATAACCTTCTTAT+TGG - chr1_1:62398849-62398868 None:intergenic 35.0%
! AAAGTTAGCTAACTTGCATC+AGG + chr1_1:62399222-62399241 Msa0034420:CDS 35.0%
TTGCATCAGGAGATAGAAAA+GGG + chr1_1:62399235-62399254 Msa0034420:CDS 35.0%
AATTCCACATACCTCAGTAT+TGG - chr1_1:62399275-62399294 None:intergenic 35.0%
GTCAGAATAATAGAGTAGGT+AGG - chr1_1:62399388-62399407 None:intergenic 35.0%
ATAGGCACCTAAAAAAGACA+CGG + chr1_1:62399434-62399453 Msa0034420:intron 35.0%
TCTAAAGGAATGCAAAACAC+TGG - chr1_1:62399678-62399697 None:intergenic 35.0%
TCTAAAGGAATGCAAAACAC+TGG - chr1_1:62399678-62399697 None:intergenic 35.0%
!!! GTTTAATTTTTTTGGGGTGC+TGG + chr1_1:62399993-62400012 Msa0034420:intron 35.0%
!! GGTTGCTAGTTCTTTTCTTA+GGG + chr1_1:62400186-62400205 Msa0034420:intron 35.0%
!! GTTGCTAGTTCTTTTCTTAG+GGG + chr1_1:62400187-62400206 Msa0034420:intron 35.0%
!!! TTCTTAGGGGTGGTTTTTTA+AGG + chr1_1:62400200-62400219 Msa0034420:intron 35.0%
!!! TCTTAGGGGTGGTTTTTTAA+GGG + chr1_1:62400201-62400220 Msa0034420:intron 35.0%
TGAGCTAAAGTATAGGAACA+AGG + chr1_1:62400389-62400408 Msa0034420:intron 35.0%
ATGAGTTAAACACTCATGGT+TGG - chr1_1:62400521-62400540 None:intergenic 35.0%
ACCATGAGTGTTTAACTCAT+AGG + chr1_1:62400521-62400540 Msa0034420:intron 35.0%
TCTAAAGGAATGCAAAACAC+TGG - chr1_1:62399678-62399697 None:intergenic 35.0%
TTGAGCTAAAGTATAGGAAC+GGG + chr1_1:62400388-62400407 Msa0034420:intron 35.0%
ATTACAGGGTAGAGTGAAAA+AGG + chr1_1:62400890-62400909 Msa0034420:intron 35.0%
!! CACAGATGGAGTACTTATTT+TGG - chr1_1:62401105-62401124 None:intergenic 35.0%
CAAAATAAGTACTCCATCTG+TGG + chr1_1:62401103-62401122 Msa0034420:CDS 35.0%
! TTGTTTTCTTTCACCACAGA+TGG - chr1_1:62401119-62401138 None:intergenic 35.0%
ATGAATCCTAAATTCGATGG+TGG - chr1_1:62401339-62401358 None:intergenic 35.0%
AGGATTCATGCCAAATTTCT+TGG + chr1_1:62401350-62401369 Msa0034420:CDS 35.0%
GGATTCATGCCAAATTTCTT+GGG + chr1_1:62401351-62401370 Msa0034420:CDS 35.0%
TTCACGATTCCTATCCATTA+AGG - chr1_1:62401397-62401416 None:intergenic 35.0%
GAAGGTCATTTACACCATTA+TGG + chr1_1:62401460-62401479 Msa0034420:three_prime_UTR 35.0%
!!! TATTTCCTATTTTGGGGTGA+GGG - chr1_1:62401553-62401572 None:intergenic 35.0%
!!! TTATTTCCTATTTTGGGGTG+AGG - chr1_1:62401554-62401573 None:intergenic 35.0%
!! ACTTGTTTCTTTTTACTCGC+TGG + chr1_1:62401748-62401767 Msa0034420:three_prime_UTR 35.0%
!! CTTGTTTCTTTTTACTCGCT+GGG + chr1_1:62401749-62401768 Msa0034420:three_prime_UTR 35.0%
! AGGTGAAGTAATATGGATTG+TGG - chr1_1:62401876-62401895 None:intergenic 35.0%
CACTTCAAGGTGAAGTAATA+TGG - chr1_1:62401883-62401902 None:intergenic 35.0%
TTGGGTATTACAAGGGTTAG+GGG - chr1_1:62395942-62395961 None:intergenic 40.0%
!!! GTGGGTTTTGGGTATTACAA+GGG - chr1_1:62395949-62395968 None:intergenic 40.0%
!!! TGTGGGTTTTGGGTATTACA+AGG - chr1_1:62395950-62395969 None:intergenic 40.0%
TGGAGTAAGGAACGAAATGA+AGG - chr1_1:62396065-62396084 None:intergenic 40.0%
TACAACGTGCCGTATATATG+CGG + chr1_1:62396564-62396583 Msa0034420:intron 40.0%
ATGGGTGTACCGCATATATA+CGG - chr1_1:62396576-62396595 None:intergenic 40.0%
TATATATGCGGTACACCCAT+AGG + chr1_1:62396576-62396595 Msa0034420:intron 40.0%
!! TCTTGCTATTGGTGTTAGGT+GGG - chr1_1:62396632-62396651 None:intergenic 40.0%
!! TTCCTCTTGCTATTGGTGTT+AGG - chr1_1:62396636-62396655 None:intergenic 40.0%
!! GGCTTTTGATTGTTTTGTGC+AGG - chr1_1:62396666-62396685 None:intergenic 40.0%
!! ATCATTTTTCTCAACAGGGC+CGG - chr1_1:62396823-62396842 None:intergenic 40.0%
CTTCTGATCAAAGTCGTTTC+AGG - chr1_1:62396901-62396920 None:intergenic 40.0%
! ACGACTTTGATCAGAAGTGT+CGG + chr1_1:62396904-62396923 Msa0034420:intron 40.0%
TAGTCGATGTGTGAGTGTTA+TGG - chr1_1:62397332-62397351 None:intergenic 40.0%
! ACGTATTCGATCAGAAGTGT+CGG + chr1_1:62397404-62397423 Msa0034420:intron 40.0%
TAGATGGAGGTGATAGACAA+GGG + chr1_1:62397540-62397559 Msa0034420:intron 40.0%
TCTTCAATGGTTACCGAAGA+TGG + chr1_1:62397645-62397664 Msa0034420:CDS 40.0%
CACACTTAAGGAACCATCTT+CGG - chr1_1:62397661-62397680 None:intergenic 40.0%
GAAATCATCCTCCACACTTA+AGG - chr1_1:62397673-62397692 None:intergenic 40.0%
TGAAGATTGGAAGGATCCTA+TGG + chr1_1:62397788-62397807 Msa0034420:CDS 40.0%
CAGTCAAGAAATGGCTGAAA+TGG + chr1_1:62397896-62397915 Msa0034420:CDS 40.0%
GTACAAGGACTTCCTTGAAA+CGG - chr1_1:62397922-62397941 None:intergenic 40.0%
! CTGAATACTTTGAAGGGGAA+AGG + chr1_1:62397981-62398000 Msa0034420:CDS 40.0%
GCTTCAGTTACTGTTAAGGA+GGG - chr1_1:62398101-62398120 None:intergenic 40.0%
TGCTTCAGTTACTGTTAAGG+AGG - chr1_1:62398102-62398121 None:intergenic 40.0%
! TGATTTGGAACTTCAGATGG+TGG - chr1_1:62398488-62398507 None:intergenic 40.0%
GGGTAAAGCTGAATCATCAT+TGG - chr1_1:62398576-62398595 None:intergenic 40.0%
GTAGATGTTGCATCCTTTGT+GGG - chr1_1:62398623-62398642 None:intergenic 40.0%
AGTAGATGTTGCATCCTTTG+TGG - chr1_1:62398624-62398643 None:intergenic 40.0%
!! GATTTGGCTGTTTTCACTGT+TGG - chr1_1:62398650-62398669 None:intergenic 40.0%
TGCTGGTATTCCCTTTAATG+AGG + chr1_1:62398718-62398737 Msa0034420:CDS 40.0%
TTGCCCAAAGCCTCATTAAA+GGG - chr1_1:62398731-62398750 None:intergenic 40.0%
TAGAAGAGAATGCTGAGAAG+AGG + chr1_1:62398951-62398970 Msa0034420:CDS 40.0%
CAGAATGAGTATGGAAGAAG+TGG - chr1_1:62399029-62399048 None:intergenic 40.0%
CACTTCTTCCATACTCATTC+TGG + chr1_1:62399027-62399046 Msa0034420:CDS 40.0%
TTCTTCCATACTCATTCTGG+AGG + chr1_1:62399030-62399049 Msa0034420:CDS 40.0%
CTTGCATCAGGAGATAGAAA+AGG + chr1_1:62399234-62399253 Msa0034420:CDS 40.0%
TGCATCAGGAGATAGAAAAG+GGG + chr1_1:62399236-62399255 Msa0034420:CDS 40.0%
TAGGTAGGTACTCAAGATAC+GGG - chr1_1:62399373-62399392 None:intergenic 40.0%
GTAGGTAGGTACTCAAGATA+CGG - chr1_1:62399374-62399393 None:intergenic 40.0%
GACCGTCAGAATAATAGAGT+AGG - chr1_1:62399392-62399411 None:intergenic 40.0%
TCACCTATGTTTGCAGTACA+CGG - chr1_1:62399533-62399552 None:intergenic 40.0%
!!! TGGAGAGAGCAGTTTTGTTT+CGG + chr1_1:62400034-62400053 Msa0034420:intron 40.0%
!!! TCAGCAGTTTTGCTGTTTTC+TGG + chr1_1:62400079-62400098 Msa0034420:intron 40.0%
ACAGAAGCAATCAGCAACTA+AGG - chr1_1:62400117-62400136 None:intergenic 40.0%
! TTAGTTGCTGATTGCTTCTG+TGG + chr1_1:62400116-62400135 Msa0034420:intron 40.0%
! GTTTTGTGTGTAGTGACTGT+TGG + chr1_1:62400138-62400157 Msa0034420:intron 40.0%
!! GGGTTGCTAGTTCTTTTCTT+AGG + chr1_1:62400185-62400204 Msa0034420:intron 40.0%
!!! CTTAGGGGTGGTTTTTTAAG+GGG + chr1_1:62400202-62400221 Msa0034420:intron 40.0%
CAAGGCACACTAATAAGCTT+GGG - chr1_1:62400288-62400307 None:intergenic 40.0%
GCCTATGAGTTAAACACTCA+TGG - chr1_1:62400525-62400544 None:intergenic 40.0%
TAGTCAACTGCAGGAATATG+TGG + chr1_1:62401025-62401044 Msa0034420:CDS 40.0%
GCTGTGCTAAGACTAAAATC+TGG + chr1_1:62401077-62401096 Msa0034420:CDS 40.0%
TCATGGAGCTCATTGCAATT+CGG - chr1_1:62401281-62401300 None:intergenic 40.0%
GGCATGAATCCTAAATTCGA+TGG - chr1_1:62401342-62401361 None:intergenic 40.0%
AATGGATAGGAATCGTGAAG+TGG + chr1_1:62401398-62401417 Msa0034420:three_prime_UTR 40.0%
TTAGTTCAGAGGATTCTCCA+AGG + chr1_1:62401426-62401445 Msa0034420:three_prime_UTR 40.0%
! TCCAAGGAGGTTCATTTTGA+AGG + chr1_1:62401442-62401461 Msa0034420:three_prime_UTR 40.0%
ACCTTCAAAATGAACCTCCT+TGG - chr1_1:62401446-62401465 None:intergenic 40.0%
! TTTTTACTCGCTGGGTTGTT+TGG + chr1_1:62401757-62401776 Msa0034420:three_prime_UTR 40.0%
! TTTTACTCGCTGGGTTGTTT+GGG + chr1_1:62401758-62401777 Msa0034420:three_prime_UTR 40.0%
!! TATACCTGTTTTGTTCCTGC+AGG + chr1_1:62401817-62401836 Msa0034420:three_prime_UTR 40.0%
TTAAGAGTGAAGCAACGGCA+CGG + chr1_1:62395862-62395881 Msa0034420:five_prime_UTR 45.0%
TATTACAAGGGTTAGGGGTG+CGG - chr1_1:62395937-62395956 None:intergenic 45.0%
! GTGTTTTCGTCTTTCGCTGT+GGG - chr1_1:62395967-62395986 None:intergenic 45.0%
! TGTGTTTTCGTCTTTCGCTG+TGG - chr1_1:62395968-62395987 None:intergenic 45.0%
CTCACTCACTCAAACACACA+TGG - chr1_1:62396006-62396025 None:intergenic 45.0%
! AAGGTACCTGGTTGTGATGA+TGG - chr1_1:62396046-62396065 None:intergenic 45.0%
!! AGGAACGAAATGAAGGTACC+TGG - chr1_1:62396058-62396077 None:intergenic 45.0%
CGTAGTTGGGAACACAGTAA+TGG - chr1_1:62396365-62396384 None:intergenic 45.0%
ACTGGCACATACATGAACAC+CGG + chr1_1:62396389-62396408 Msa0034420:intron 45.0%
GTGGGGATTCCTCATGTATA+CGG - chr1_1:62396614-62396633 None:intergenic 45.0%
!! CTTGCTATTGGTGTTAGGTG+GGG - chr1_1:62396631-62396650 None:intergenic 45.0%
!! CTCTTGCTATTGGTGTTAGG+TGG - chr1_1:62396633-62396652 None:intergenic 45.0%
CACCTAACACCAATAGCAAG+AGG + chr1_1:62396631-62396650 Msa0034420:intron 45.0%
!!! TTTTTTGAGGCCCATCCTTG+AGG + chr1_1:62396758-62396777 Msa0034420:intron 45.0%
!!! TTTTTGAGGCCCATCCTTGA+GGG + chr1_1:62396759-62396778 Msa0034420:intron 45.0%
GAAACCACATGTGTCAGTGT+CGG + chr1_1:62396854-62396873 Msa0034420:intron 45.0%
!! ATCAGAAGTGTCGGTTACAG+AGG + chr1_1:62396913-62396932 Msa0034420:intron 45.0%
TGTGTCAGTGCTGCATAGTT+GGG - chr1_1:62397004-62397023 None:intergenic 45.0%
!! ATCAGAAGTGTCAGTGCTAC+AGG + chr1_1:62397133-62397152 Msa0034420:intron 45.0%
!! TCAGAAGTGTCAGTGCTACA+GGG + chr1_1:62397134-62397153 Msa0034420:intron 45.0%
TAAGGGACTAAAGGAGTTGG+GGG - chr1_1:62397265-62397284 None:intergenic 45.0%
CTAAGGGACTAAAGGAGTTG+GGG - chr1_1:62397266-62397285 None:intergenic 45.0%
GCTAAGGGACTAAAGGAGTT+GGG - chr1_1:62397267-62397286 None:intergenic 45.0%
AGCTAAGGGACTAAAGGAGT+TGG - chr1_1:62397268-62397287 None:intergenic 45.0%
GGTTTGAGCTAAGGGACTAA+AGG - chr1_1:62397274-62397293 None:intergenic 45.0%
CGATGTGTGAGTGTTATGGT+CGG - chr1_1:62397328-62397347 None:intergenic 45.0%
GTAGATGGAGGTGATAGACA+AGG + chr1_1:62397539-62397558 Msa0034420:intron 45.0%
CGAAGATGGTTCCTTAAGTG+TGG + chr1_1:62397659-62397678 Msa0034420:CDS 45.0%
AGATGGTTCCTTAAGTGTGG+AGG + chr1_1:62397662-62397681 Msa0034420:CDS 45.0%
AGCTTCGATTCAGCGGAATT+AGG + chr1_1:62397720-62397739 Msa0034420:CDS 45.0%
GCTTCGATTCAGCGGAATTA+GGG + chr1_1:62397721-62397740 Msa0034420:CDS 45.0%
GATTCAGCGGAATTAGGGTT+AGG + chr1_1:62397726-62397745 Msa0034420:CDS 45.0%
AGGAGGCTACAGTCAAGAAA+TGG + chr1_1:62397887-62397906 Msa0034420:CDS 45.0%
AGGAAGTCCTTGTACACAGA+AGG + chr1_1:62397927-62397946 Msa0034420:CDS 45.0%
!! TAGAGATGCTCGGTGTACTT+CGG + chr1_1:62398066-62398085 Msa0034420:CDS 45.0%
ACACGAGTCATTTCACCAGA+AGG + chr1_1:62398155-62398174 Msa0034420:CDS 45.0%
ACCTAAAGCTTGTGGCAAAG+CGG + chr1_1:62398403-62398422 Msa0034420:CDS 45.0%
GGCAAAGCGGGTGTTAAATT+AGG + chr1_1:62398416-62398435 Msa0034420:CDS 45.0%
GGAAAGCTTACAAGCGTAAG+TGG + chr1_1:62398437-62398456 Msa0034420:CDS 45.0%
CGTGGCTCCTCAAATACAAA+AGG + chr1_1:62398518-62398537 Msa0034420:CDS 45.0%
GATGATTCAGCTTTACCCGA+AGG + chr1_1:62398578-62398597 Msa0034420:CDS 45.0%
CGCTGCAAAATTACCCACAA+AGG + chr1_1:62398607-62398626 Msa0034420:CDS 45.0%
! TTTTGAGCGGAAGAGGAGAA+TGG - chr1_1:62398683-62398702 None:intergenic 45.0%
ATTCTCCTCTTCCGCTCAAA+AGG + chr1_1:62398682-62398701 Msa0034420:CDS 45.0%
! TTGAACCTTTTGAGCGGAAG+AGG - chr1_1:62398690-62398709 None:intergenic 45.0%
CTTGCCCAAAGCCTCATTAA+AGG - chr1_1:62398732-62398751 None:intergenic 45.0%
CTTTGGGCAAGTTTATCCCA+CGG + chr1_1:62398741-62398760 Msa0034420:CDS 45.0%
TTTGGGCAAGTTTATCCCAC+GGG + chr1_1:62398742-62398761 Msa0034420:CDS 45.0%
ATCTCGAGCACAAGAATTGC+AGG + chr1_1:62398796-62398815 Msa0034420:CDS 45.0%
AGCACAAGAATTGCAGGATG+AGG + chr1_1:62398802-62398821 Msa0034420:CDS 45.0%
GAATGACTGGGCCAATAAGA+AGG + chr1_1:62398835-62398854 Msa0034420:CDS 45.0%
GGCCAATAAGAAGGTTATGC+AGG + chr1_1:62398844-62398863 Msa0034420:CDS 45.0%
AGATAAGCTTCGCAAGCTTC+AGG + chr1_1:62398871-62398890 Msa0034420:CDS 45.0%
! TGAGAAGAGGATCTCTGAAG+TGG + chr1_1:62398964-62398983 Msa0034420:CDS 45.0%
CTTTGCCTCCAGAATGAGTA+TGG - chr1_1:62399038-62399057 None:intergenic 45.0%
GTCCTTGCTAGAGAAAGAGT+TGG + chr1_1:62399060-62399079 Msa0034420:CDS 45.0%
CACCAACTCTTTCTCTAGCA+AGG - chr1_1:62399065-62399084 None:intergenic 45.0%
! GTCGTTGGCTGAAAAGTCAA+TGG + chr1_1:62399093-62399112 Msa0034420:CDS 45.0%
GGCAAGTTATCAACAAGCAC+TGG + chr1_1:62399114-62399133 Msa0034420:CDS 45.0%
! TAACTCCGTTTTCCACGACT+GGG - chr1_1:62399167-62399186 None:intergenic 45.0%
CTAGCCAATACTGAGGTATG+TGG + chr1_1:62399268-62399287 Msa0034420:intron 45.0%
!!! GAAGTCGCCGTGTCTTTTTT+AGG - chr1_1:62399444-62399463 None:intergenic 45.0%
TAGCCGTGTACTGCAAACAT+AGG + chr1_1:62399527-62399546 Msa0034420:intron 45.0%
GCAAACATAGGTGAGATGAG+CGG + chr1_1:62399539-62399558 Msa0034420:intron 45.0%
TCACCTGTGTTTGCAGTACA+CGG - chr1_1:62399788-62399807 None:intergenic 45.0%
!!! AGAGCAGTTTTGTTTCGGTG+TGG + chr1_1:62400039-62400058 Msa0034420:intron 45.0%
!! TTTTGTTTCGGTGTGGTGCT+GGG + chr1_1:62400046-62400065 Msa0034420:intron 45.0%
GCAAAACTGCTGACCGAAAA+AGG - chr1_1:62400072-62400091 None:intergenic 45.0%
! AGTGACTGTTGGAGCTTTGT+TGG + chr1_1:62400149-62400168 Msa0034420:intron 45.0%
!! ACTGTTGGAGCTTTGTTGGT+TGG + chr1_1:62400153-62400172 Msa0034420:intron 45.0%
!! TTTGTTGGTTGGTAGTCCAG+TGG + chr1_1:62400164-62400183 Msa0034420:intron 45.0%
!! TTGTTGGTTGGTAGTCCAGT+GGG + chr1_1:62400165-62400184 Msa0034420:intron 45.0%
GAAAAGAACTAGCAACCCAC+TGG - chr1_1:62400183-62400202 None:intergenic 45.0%
!! GCTAGTTCTTTTCTTAGGGG+TGG + chr1_1:62400190-62400209 Msa0034420:intron 45.0%
! TAAGGGGTTTTTGTTCGAGC+CGG + chr1_1:62400218-62400237 Msa0034420:intron 45.0%
GCAAGGCACACTAATAAGCT+TGG - chr1_1:62400289-62400308 None:intergenic 45.0%
GCTTATTAGTGTGCCTTGCA+CGG + chr1_1:62400290-62400309 Msa0034420:intron 45.0%
CTTATTAGTGTGCCTTGCAC+GGG + chr1_1:62400291-62400310 Msa0034420:intron 45.0%
GACAGAAAAAATCCTCGCAC+AGG + chr1_1:62400923-62400942 Msa0034420:CDS 45.0%
! TGAAGCACTCATGAAAGCTG+AGG + chr1_1:62400977-62400996 Msa0034420:CDS 45.0%
ACTAGCTGCCTTCTTTCTGA+CGG - chr1_1:62401009-62401028 None:intergenic 45.0%
CAGCATGGTAAAGCTAGAGA+AGG + chr1_1:62401049-62401068 Msa0034420:CDS 45.0%
AATGAGCTCCATGAGAAGCA+AGG + chr1_1:62401287-62401306 Msa0034420:CDS 45.0%
ATGAGCTCCATGAGAAGCAA+GGG + chr1_1:62401288-62401307 Msa0034420:CDS 45.0%
TGAAGGAATGCCCTTCATGT+AGG + chr1_1:62401312-62401331 Msa0034420:CDS 45.0%
GTAGGACCACCATCGAATTT+AGG + chr1_1:62401330-62401349 Msa0034420:CDS 45.0%
CTACTGCTGCCCAAGAAATT+TGG - chr1_1:62401363-62401382 None:intergenic 45.0%
AAGTGGTGCAGTTAGTTCAG+AGG + chr1_1:62401415-62401434 Msa0034420:three_prime_UTR 45.0%
! GCTTGTCAGGTTGTTATGTG+TGG + chr1_1:62401839-62401858 Msa0034420:three_prime_UTR 45.0%
AGGTTGTTATGTGTGGCTCA+AGG + chr1_1:62401846-62401865 Msa0034420:three_prime_UTR 45.0%
GGGGGTTAAGAGTGAAGCAA+CGG + chr1_1:62395857-62395876 Msa0034420:five_prime_UTR 50.0%
! CGTCTTTCGCTGTGGGTTTT+GGG - chr1_1:62395960-62395979 None:intergenic 50.0%
! TCGTCTTTCGCTGTGGGTTT+TGG - chr1_1:62395961-62395980 None:intergenic 50.0%
!! CCTGGTTGTGATGATGGTGA+AGG - chr1_1:62396040-62396059 None:intergenic 50.0%
CCTTCACCATCATCACAACC+AGG + chr1_1:62396037-62396056 Msa0034420:five_prime_UTR 50.0%
TGTTCCCAACTACGTAGCAC+TGG + chr1_1:62396371-62396390 Msa0034420:intron 50.0%
TGTGCCAGTGCTACGTAGTT+GGG - chr1_1:62396378-62396397 None:intergenic 50.0%
ATGTGCCAGTGCTACGTAGT+TGG - chr1_1:62396379-62396398 None:intergenic 50.0%
GTCGATGTGTGTGTCATGTC+CGG - chr1_1:62396411-62396430 None:intergenic 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG + chr1_1:62396472-62396491 Msa0034420:intron 50.0%
GTTTGCACCCCCTTTATTGC+AGG + chr1_1:62396693-62396712 Msa0034420:intron 50.0%
GTCGGACACTTGACACATGT+CGG + chr1_1:62396872-62396891 Msa0034420:intron 50.0%
CTGTGTCAGTGCTGCATAGT+TGG - chr1_1:62397005-62397024 None:intergenic 50.0%
!! ATGCAGCACTGACACAGACA+TGG + chr1_1:62397008-62397027 Msa0034420:intron 50.0%
ACAGACATGGACACTGACAC+TGG + chr1_1:62397021-62397040 Msa0034420:intron 50.0%
GGAATCACATGTGTCTGCGT+CGG + chr1_1:62397092-62397111 Msa0034420:intron 50.0%
!! CAGAAGTGTCAGTGCTACAG+GGG + chr1_1:62397135-62397154 Msa0034420:intron 50.0%
AGTTGGGGGGTTAAAGTACG+AGG - chr1_1:62397251-62397270 None:intergenic 50.0%
AAGGGACTAAAGGAGTTGGG+GGG - chr1_1:62397264-62397283 None:intergenic 50.0%
!! CAGAAGTGTCGGTGCTATAG+AGG + chr1_1:62397415-62397434 Msa0034420:intron 50.0%
TCCGCAAAGCTTCGATTCAG+CGG + chr1_1:62397713-62397732 Msa0034420:CDS 50.0%
TCCGCTGAATCGAAGCTTTG+CGG - chr1_1:62397717-62397736 None:intergenic 50.0%
ACAACATTTGGGTGTGCTCG+AGG + chr1_1:62397764-62397783 Msa0034420:CDS 50.0%
GTGTGCTCGAGGTTGAAGAT+TGG + chr1_1:62397775-62397794 Msa0034420:CDS 50.0%
GCTCGAGGTTGAAGATTGGA+AGG + chr1_1:62397779-62397798 Msa0034420:CDS 50.0%
TCCTATGGCAACTCAGCTTG+AGG + chr1_1:62397803-62397822 Msa0034420:CDS 50.0%
TCCTCAAGCTGAGTTGCCAT+AGG - chr1_1:62397807-62397826 None:intergenic 50.0%
TGGCTGAAATGGCCGTTTCA+AGG + chr1_1:62397907-62397926 Msa0034420:CDS 50.0%
AGGGTCTCCTTCTGTGTACA+AGG - chr1_1:62397937-62397956 None:intergenic 50.0%
!! AGAGATGCTCGGTGTACTTC+GGG + chr1_1:62398067-62398086 Msa0034420:CDS 50.0%
TGAAGCAATGTGGGAGTTGC+TGG + chr1_1:62398115-62398134 Msa0034420:CDS 50.0%
TCACCAGAAGGTCAACTGAG+TGG + chr1_1:62398167-62398186 Msa0034420:CDS 50.0%
CCTAAAGCTTGTGGCAAAGC+GGG + chr1_1:62398404-62398423 Msa0034420:CDS 50.0%
GATTCAGCTTTACCCGAAGG+AGG + chr1_1:62398581-62398600 Msa0034420:CDS 50.0%
! TTTTGCAGCGCTACCTCCTT+CGG - chr1_1:62398597-62398616 None:intergenic 50.0%
GTTTATCCCACGGGATGAGA+AGG + chr1_1:62398751-62398770 Msa0034420:CDS 50.0%
AGGTGCAAAGCTGGAATGAC+TGG + chr1_1:62398822-62398841 Msa0034420:CDS 50.0%
GGTGCAAAGCTGGAATGACT+GGG + chr1_1:62398823-62398842 Msa0034420:CDS 50.0%
TAAGCTTCGCAAGCTTCAGG+CGG + chr1_1:62398874-62398893 Msa0034420:CDS 50.0%
!! CTCTGAAGTGGAGAATGCCA+TGG + chr1_1:62398976-62398995 Msa0034420:CDS 50.0%
! GTTGGTGTCTGCTAAGTCGT+TGG + chr1_1:62399078-62399097 Msa0034420:CDS 50.0%
CTATTCAACAAGCCCAGTCG+TGG + chr1_1:62399152-62399171 Msa0034420:CDS 50.0%
ACAAGCCCAGTCGTGGAAAA+CGG + chr1_1:62399159-62399178 Msa0034420:CDS 50.0%
! CTAACTCCGTTTTCCACGAC+TGG - chr1_1:62399168-62399187 None:intergenic 50.0%
TAGGTGCCTATGCATGTCCA+GGG - chr1_1:62399425-62399444 None:intergenic 50.0%
TTAGGTGCCTATGCATGTCC+AGG - chr1_1:62399426-62399445 None:intergenic 50.0%
TAGCCGTGTACTGCAAACAC+AGG + chr1_1:62399782-62399801 Msa0034420:intron 50.0%
GCAAACACAGGTGAGATGAG+CGG + chr1_1:62399794-62399813 Msa0034420:intron 50.0%
!!! GTTTTGTTTCGGTGTGGTGC+TGG + chr1_1:62400045-62400064 Msa0034420:intron 50.0%
!!! TGCTGTTTTCTGGTCTGCTG+CGG + chr1_1:62400089-62400108 Msa0034420:intron 50.0%
GGCACACTAATAAGCTTGGG+TGG - chr1_1:62400285-62400304 None:intergenic 50.0%
TTAACCAACAAGCCCGTGCA+AGG - chr1_1:62400306-62400325 None:intergenic 50.0%
TAAAGTATGCAGCCTGTGCG+AGG - chr1_1:62400938-62400957 None:intergenic 50.0%
AGCACTCATGAAAGCTGAGG+AGG + chr1_1:62400980-62400999 Msa0034420:CDS 50.0%
GCAGGAATATGTGGACAGCA+TGG + chr1_1:62401034-62401053 Msa0034420:CDS 50.0%
! GAAATCTGAGACGGTGACGA+CGG + chr1_1:62401139-62401158 Msa0034420:CDS 50.0%
! AAATCTGAGACGGTGACGAC+GGG + chr1_1:62401140-62401159 Msa0034420:CDS 50.0%
!! TCCACCAGCTGGTTTGTCTT+GGG - chr1_1:62401171-62401190 None:intergenic 50.0%
!! TTCCACCAGCTGGTTTGTCT+TGG - chr1_1:62401172-62401191 None:intergenic 50.0%
CAGCTGGTGGAAGATTGAAG+CGG + chr1_1:62401180-62401199 Msa0034420:CDS 50.0%
AGCTGGTGGAAGATTGAAGC+GGG + chr1_1:62401181-62401200 Msa0034420:CDS 50.0%
GTGTGTCATGTGCCTATCAG+AGG + chr1_1:62401211-62401230 Msa0034420:CDS 50.0%
TCATGTGCCTATCAGAGGAG+AGG + chr1_1:62401216-62401235 Msa0034420:CDS 50.0%
! TTTTCTGCCATGTGCGCATC+AGG + chr1_1:62401247-62401266 Msa0034420:CDS 50.0%
CACAAAACCTGATGCGCACA+TGG - chr1_1:62401257-62401276 None:intergenic 50.0%
CCTTCATCCCTTGCTTCTCA+TGG - chr1_1:62401298-62401317 None:intergenic 50.0%
CCATGAGAAGCAAGGGATGA+AGG + chr1_1:62401295-62401314 Msa0034420:CDS 50.0%
! CGATGGTGGTCCTACATGAA+GGG - chr1_1:62401325-62401344 None:intergenic 50.0%
! TCGATGGTGGTCCTACATGA+AGG - chr1_1:62401326-62401345 None:intergenic 50.0%
GTTCAGAGGATTCTCCAAGG+AGG + chr1_1:62401429-62401448 Msa0034420:three_prime_UTR 50.0%
!!! TCCTATTTTGGGGTGAGGGT+GGG - chr1_1:62401549-62401568 None:intergenic 50.0%
!!! TTCCTATTTTGGGGTGAGGG+TGG - chr1_1:62401550-62401569 None:intergenic 50.0%
CAAGCCTGCAGGAACAAAAC+AGG - chr1_1:62401824-62401843 None:intergenic 50.0%
TTTGTTCCTGCAGGCTTGTC+AGG + chr1_1:62401826-62401845 Msa0034420:three_prime_UTR 50.0%
TAACAACCTGACAAGCCTGC+AGG - chr1_1:62401835-62401854 None:intergenic 50.0%
!! GTGCGGCTGATGGTGGTATT+GGG - chr1_1:62395920-62395939 None:intergenic 55.0%
AGCCACCGAATTCTCAGGGA+CGG - chr1_1:62396453-62396472 None:intergenic 55.0%
! TCCCTGAGAATTCGGTGGCT+CGG + chr1_1:62396453-62396472 Msa0034420:intron 55.0%
GCAAACAGCTCAACCGAGCT+GGG - chr1_1:62396788-62396807 None:intergenic 55.0%
TGCAAACAGCTCAACCGAGC+TGG - chr1_1:62396789-62396808 None:intergenic 55.0%
GTGTCCGACACTGACACATG+TGG - chr1_1:62396861-62396880 None:intergenic 55.0%
CCACCACTCAGTTGACCTTC+TGG - chr1_1:62398173-62398192 None:intergenic 55.0%
CCAGAAGGTCAACTGAGTGG+TGG + chr1_1:62398170-62398189 Msa0034420:CDS 55.0%
CCCGCTTTGCCACAAGCTTT+AGG - chr1_1:62398407-62398426 None:intergenic 55.0%
TTTGCAGCGCTACCTCCTTC+GGG - chr1_1:62398596-62398615 None:intergenic 55.0%
GCGGAAGAGGAGAATGGCTT+AGG - chr1_1:62398677-62398696 None:intergenic 55.0%
GTTCGTCCTTCTCATCCCGT+GGG - chr1_1:62398760-62398779 None:intergenic 55.0%
TGTTCGTCCTTCTCATCCCG+TGG - chr1_1:62398761-62398780 None:intergenic 55.0%
TGCAGGATGAGGTGCAAAGC+TGG + chr1_1:62398813-62398832 Msa0034420:CDS 55.0%
AGGTGCCTATGCATGTCCAG+GGG - chr1_1:62399424-62399443 None:intergenic 55.0%
!! GTGTGGTGCTGGGCCTTTTT+CGG + chr1_1:62400056-62400075 Msa0034420:intron 55.0%
GGAGGATGCCGTCAGAAAGA+AGG + chr1_1:62400998-62401017 Msa0034420:CDS 55.0%
GAAGGCAGCTAGTCAACTGC+AGG + chr1_1:62401016-62401035 Msa0034420:CDS 55.0%
! AATCTGAGACGGTGACGACG+GGG + chr1_1:62401141-62401160 Msa0034420:CDS 55.0%
TCCCAAGACAAACCAGCTGG+TGG + chr1_1:62401167-62401186 Msa0034420:CDS 55.0%
CGCTTCAATCTTCCACCAGC+TGG - chr1_1:62401182-62401201 None:intergenic 55.0%
GTGCCTATCAGAGGAGAGGT+CGG + chr1_1:62401220-62401239 Msa0034420:CDS 55.0%
CAACCGACCTCTCCTCTGAT+AGG - chr1_1:62401226-62401245 None:intergenic 55.0%
AGGGTGGGGGAATATGGACT+AGG - chr1_1:62401534-62401553 None:intergenic 55.0%
!!! CTATTTTGGGGTGAGGGTGG+GGG - chr1_1:62401547-62401566 None:intergenic 55.0%
!!! CCTATTTTGGGGTGAGGGTG+GGG - chr1_1:62401548-62401567 None:intergenic 55.0%
!! GGTGCGGCTGATGGTGGTAT+TGG - chr1_1:62395921-62395940 None:intergenic 60.0%
CAGGGCCGTCCCTGAGAATT+CGG + chr1_1:62396445-62396464 Msa0034420:intron 60.0%
GCCGAGCCACCGAATTCTCA+GGG - chr1_1:62396457-62396476 None:intergenic 60.0%
AGCCGAGCCACCGAATTCTC+AGG - chr1_1:62396458-62396477 None:intergenic 60.0%
! AGAATTCGGTGGCTCGGCTC+TGG + chr1_1:62396459-62396478 Msa0034420:intron 60.0%
! GAATTCGGTGGCTCGGCTCT+GGG + chr1_1:62396460-62396479 Msa0034420:intron 60.0%
! AAGGGGGTGCAAACAGCGCA+TGG - chr1_1:62396687-62396706 None:intergenic 60.0%
TTGAGGCCCATCCTTGAGGG+AGG + chr1_1:62396762-62396781 Msa0034420:intron 60.0%
GAGCTGTTTGCACCCCCTCA+AGG + chr1_1:62396797-62396816 Msa0034420:intron 60.0%
TGTTTGCACCCCCTCAAGGC+CGG + chr1_1:62396801-62396820 Msa0034420:intron 60.0%
TCGTGCCCCTGGACATGCAT+AGG + chr1_1:62399416-62399435 Msa0034420:intron 60.0%
GGGGAAATCGGTTGCCGCAA+AGG - chr1_1:62400246-62400265 None:intergenic 60.0%
TGTGCCTTGCACGGGCTTGT+TGG + chr1_1:62400299-62400318 Msa0034420:intron 60.0%
! ATCTGAGACGGTGACGACGG+GGG + chr1_1:62401142-62401161 Msa0034420:CDS 60.0%
GGCTCCCAAGACAAACCAGC+TGG + chr1_1:62401164-62401183 Msa0034420:CDS 60.0%
CCCCACCCTCACCCCAAAAT+AGG + chr1_1:62401545-62401564 Msa0034420:three_prime_UTR 60.0%
! GTTAGGGGTGCGGCTGATGG+TGG - chr1_1:62395927-62395946 None:intergenic 65.0%
! AGGGTTAGGGGTGCGGCTGA+TGG - chr1_1:62395930-62395949 None:intergenic 65.0%
GGCCGTCCCTGAGAATTCGG+TGG + chr1_1:62396448-62396467 Msa0034420:intron 65.0%
GCTGGGCCTCCCTCAAGGAT+GGG - chr1_1:62396771-62396790 None:intergenic 65.0%
AGCTGGGCCTCCCTCAAGGA+TGG - chr1_1:62396772-62396791 None:intergenic 65.0%
TCCTTGAGGGAGGCCCAGCT+CGG + chr1_1:62396772-62396791 Msa0034420:intron 65.0%
TCAACAGGGCCGGCCTTGAG+GGG - chr1_1:62396813-62396832 None:intergenic 65.0%
CTCAACAGGGCCGGCCTTGA+GGG - chr1_1:62396814-62396833 None:intergenic 65.0%
TCTCAACAGGGCCGGCCTTG+AGG - chr1_1:62396815-62396834 None:intergenic 65.0%
TGTTCGAGCCGGCGCCTTTG+CGG + chr1_1:62400229-62400248 Msa0034420:intron 65.0%
! ATCGGTTGCCGCAAAGGCGC+CGG - chr1_1:62400240-62400259 None:intergenic 65.0%
! TCTGAGACGGTGACGACGGG+GGG + chr1_1:62401143-62401162 Msa0034420:CDS 65.0%
GGGGTGAGGGTGGGGGAATA+TGG - chr1_1:62401540-62401559 None:intergenic 65.0%
ACCGAGCTGGGCCTCCCTCA+AGG - chr1_1:62396776-62396795 None:intergenic 70.0%
CAACAGGGCCGGCCTTGAGG+GGG - chr1_1:62396812-62396831 None:intergenic 70.0%
! GACGGTCTGACTCGTGCCCC+TGG + chr1_1:62399405-62399424 Msa0034420:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62395848 62401911 62395848 ID=Msa0034420;Name=Msa0034420
chr1_1 mRNA 62395848 62401911 62395848 ID=Msa0034420-mRNA-1;Parent=Msa0034420;Name=Msa0034420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=257|1|1|1|0.33|0.5|4|529|741
chr1_1 exon 62395848 62396058 62395848 ID=Msa0034420-mRNA-1:exon:19700;Parent=Msa0034420-mRNA-1
chr1_1 exon 62396224 62396269 62396224 ID=Msa0034420-mRNA-1:exon:19701;Parent=Msa0034420-mRNA-1
chr1_1 exon 62397543 62399282 62397543 ID=Msa0034420-mRNA-1:exon:19702;Parent=Msa0034420-mRNA-1
chr1_1 exon 62400897 62401911 62400897 ID=Msa0034420-mRNA-1:exon:19703;Parent=Msa0034420-mRNA-1
chr1_1 five_prime_UTR 62395848 62396058 62395848 ID=Msa0034420-mRNA-1:five_prime_utr;Parent=Msa0034420-mRNA-1
chr1_1 five_prime_UTR 62396224 62396269 62396224 ID=Msa0034420-mRNA-1:five_prime_utr;Parent=Msa0034420-mRNA-1
chr1_1 CDS 62397543 62399282 62397543 ID=Msa0034420-mRNA-1:cds;Parent=Msa0034420-mRNA-1
chr1_1 CDS 62400897 62401382 62400897 ID=Msa0034420-mRNA-1:cds;Parent=Msa0034420-mRNA-1
chr1_1 three_prime_UTR 62401383 62401911 62401383 ID=Msa0034420-mRNA-1:three_prime_utr;Parent=Msa0034420-mRNA-1
Gene Sequence

>Msa0034420

ATGGAGGTGATAGACAAGGGTATTATAATGGCTGAAGAAATGGATAAAACTGTTGGTTCTGAACAAGGTTGTAATTACAAGAGAAAATTAGATGATGAGTCTTCTTCAATGGTTACCGAAGATGGTTCCTTAAGTGTGGAGGATGATTTCCCTCCCTATGAATTTACAAATCCGCAAAGCTTCGATTCAGCGGAATTAGGGTTAGGTTGTTGTACAGAAGAACAACATTTGGGTGTGCTCGAGGTTGAAGATTGGAAGGATCCTATGGCAACTCAGCTTGAGGACTTACTGATGAGTAATTTGGAAGCAATTTTTAGTAATGCTATCAAGAAGGTTGTTGATTTAGGAGGCTACAGTCAAGAAATGGCTGAAATGGCCGTTTCAAGGAAGTCCTTGTACACAGAAGGAGACCCTCTCACAAATATTGTCTACAACACACTGAATACTTTGAAGGGGAAAGGTACTGAAACTCCTGCAGACTTTGTATTTCAAAATACAAAGCAGTTACTGCATTATAGTTTGGTAGAGATGCTCGGTGTACTTCGGGAACTAAAACCCTCCTTAACAGTAACTGAAGCAATGTGGGAGTTGCTGGTACATGACTTGAGTATTACACGAGTCATTTCACCAGAAGGTCAACTGAGTGGTGGTGATTCTAGCGAGCAAAGCTCTGACAAGTCTTCTGCTCCCCCATCAAAGTTAAATGTTCAGTCTGATATGATTGGAAGTATGAGTGTGACAACTTTCACAAATATCTCCCAGGAAAGTAAATCAGAATCTAATTCTCAGCTGATGAAGAGCAGAAAACACCATAAAGAGTTTACATCAGTGCTTAGGGAGAAGTTCTTTCATATGAAAGAACCTAAAGCTTGTGGCAAAGCGGGTGTTAAATTAGGAAAGCTTACAAGCGTAAGTGGTTTGATTGTTGAAAAAAAACTCAAGCCACCATCTGAAGTTCCAAATCAGAAAATGAAACGTGGCTCCTCAAATACAAAAGGAGTTAGTATAGCAGGAGTATGCCGTATTTCAACCAATGATGATTCAGCTTTACCCGAAGGAGGTAGCGCTGCAAAATTACCCACAAAGGATGCAACATCTACTTCTCCAACAGTGAAAACAGCCAAATCAAAACCTAAGCCATTCTCCTCTTCCGCTCAAAAGGTTCAAAATTACTGTGCTGGTATTCCCTTTAATGAGGCTTTGGGCAAGTTTATCCCACGGGATGAGAAGGACGAACAAGTTTTGAAATTAGTATCTCGAGCACAAGAATTGCAGGATGAGGTGCAAAGCTGGAATGACTGGGCCAATAAGAAGGTTATGCAGGTAGCAGATAAGCTTCGCAAGCTTCAGGCGGAGTCTAAATCTTTGAAAAAAGAAACTGAAATTTATAAAAAAGAAAGAAAATCTTTAGAAGAGAATGCTGAGAAGAGGATCTCTGAAGTGGAGAATGCCATGGAAAATAATCAAAAGCAACTTGAGAGTGCCACTTCTTCCATACTCATTCTGGAGGCAAAGAAGTCCTTGCTAGAGAAAGAGTTGGTGTCTGCTAAGTCGTTGGCTGAAAAGTCAATGGCAAGTTATCAACAAGCACTGGAGAGAGAGCAGATGACTATTCAACAAGCCCAGTCGTGGAAAACGGAGTTAGATTTGCTTCAAGATGAACTTGAGAAAGAGAAGCAAAAGTTAGCTAACTTGCATCAGGAGATAGAAAAGGGGAAAAATTTTCTAGCCAATACTGAGGGTAGAGTGAAAAAGGAGAGAGCTAAGACAGAAAAAATCCTCGCACAGGCTGCATACTTTAGAAAAGAAAGAGAACAGTCTGAAGCACTCATGAAAGCTGAGGAGGATGCCGTCAGAAAGAAGGCAGCTAGTCAACTGCAGGAATATGTGGACAGCATGGTAAAGCTAGAGAAGGAGATCGCTGTGCTAAGACTAAAATCTGGTTCCAAAATAAGTACTCCATCTGTGGTGAAAGAAAACAAGAAATCTGAGACGGTGACGACGGGGGGCTCCCAAGACAAACCAGCTGGTGGAAGATTGAAGCGGGAGCATGAGTGTGTCATGTGCCTATCAGAGGAGAGGTCGGTTGTTTTTCTGCCATGTGCGCATCAGGTTTTGTGTCCGAATTGCAATGAGCTCCATGAGAAGCAAGGGATGAAGGAATGCCCTTCATGTAGGACCACCATCGAATTTAGGATTCATGCCAAATTTCTTGGGCAGCAGTAG
Protein sequence

>Msa0034420

MEVIDKGIIMAEEMDKTVGSEQGCNYKRKLDDESSSMVTEDGSLSVEDDFPPYEFTNPQSFDSAELGLGCCTEEQHLGVLEVEDWKDPMATQLEDLLMSNLEAIFSNAIKKVVDLGGYSQEMAEMAVSRKSLYTEGDPLTNIVYNTLNTLKGKGTETPADFVFQNTKQLLHYSLVEMLGVLRELKPSLTVTEAMWELLVHDLSITRVISPEGQLSGGDSSEQSSDKSSAPPSKLNVQSDMIGSMSVTTFTNISQESKSESNSQLMKSRKHHKEFTSVLREKFFHMKEPKACGKAGVKLGKLTSVSGLIVEKKLKPPSEVPNQKMKRGSSNTKGVSIAGVCRISTNDDSALPEGGSAAKLPTKDATSTSPTVKTAKSKPKPFSSSAQKVQNYCAGIPFNEALGKFIPRDEKDEQVLKLVSRAQELQDEVQSWNDWANKKVMQVADKLRKLQAESKSLKKETEIYKKERKSLEENAEKRISEVENAMENNQKQLESATSSILILEAKKSLLEKELVSAKSLAEKSMASYQQALEREQMTIQQAQSWKTELDLLQDELEKEKQKLANLHQEIEKGKNFLANTEGRVKKERAKTEKILAQAAYFRKEREQSEALMKAEEDAVRKKAASQLQEYVDSMVKLEKEIAVLRLKSGSKISTPSVVKENKKSETVTTGGSQDKPAGGRLKREHECVMCLSEERSVVFLPCAHQVLCPNCNELHEKQGMKECPSCRTTIEFRIHAKFLGQQ*