Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319850 | XP_003594777.1 | 100.000 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 2.14e-80 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319850 | sp|Q6NLH0|RPB9A_ARATH | 88.596 | 114 | 13 | 0 | 1 | 114 | 1 | 114 | 2.17e-75 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0319850 | 0.838424 | 2.898943e-57 | -8.615850e-47 |
| Msa0003700 | Msa0319850 | 0.808783 | 2.614138e-50 | -8.615850e-47 |
| Msa0009760 | Msa0319850 | 0.801917 | 7.179173e-49 | -8.615850e-47 |
| Msa0027230 | Msa0319850 | 0.826627 | 2.446056e-54 | -8.615850e-47 |
| Msa0027260 | Msa0319850 | 0.854259 | 1.386987e-61 | -8.615850e-47 |
| Msa0034420 | Msa0319850 | 0.819421 | 1.171624e-52 | -8.615850e-47 |
| Msa0047160 | Msa0319850 | 0.806476 | 8.075803e-50 | -8.615850e-47 |
| Msa0047980 | Msa0319850 | 0.806750 | 7.068799e-50 | -8.615850e-47 |
| Msa0056470 | Msa0319850 | 0.819576 | 1.080263e-52 | -8.615850e-47 |
| Msa0069330 | Msa0319850 | 0.814057 | 1.870043e-51 | -8.615850e-47 |
| Msa0073670 | Msa0319850 | 0.810643 | 1.040720e-50 | -8.615850e-47 |
| Msa0074320 | Msa0319850 | 0.829446 | 5.125099e-55 | -8.615850e-47 |
| Msa0076040 | Msa0319850 | 0.817144 | 3.840936e-52 | -8.615850e-47 |
| Msa0083070 | Msa0319850 | 0.805920 | 1.057483e-49 | -8.615850e-47 |
| Msa0094470 | Msa0319850 | 0.827581 | 1.445734e-54 | -8.615850e-47 |
| Msa0100740 | Msa0319850 | 0.820628 | 6.202685e-53 | -8.615850e-47 |
| Msa0104550 | Msa0319850 | 0.813960 | 1.964381e-51 | -8.615850e-47 |
| Msa0122970 | Msa0319850 | 0.825557 | 4.393978e-54 | -8.615850e-47 |
| Msa0127310 | Msa0319850 | 0.805690 | 1.181898e-49 | -8.615850e-47 |
| Msa0128860 | Msa0319850 | 0.850632 | 1.498137e-60 | -8.615850e-47 |
| Msa0140820 | Msa0319850 | 0.802838 | 4.638259e-49 | -8.615850e-47 |
| Msa0146280 | Msa0319850 | 0.817197 | 3.736627e-52 | -8.615850e-47 |
| Msa0150570 | Msa0319850 | 0.816398 | 5.643872e-52 | -8.615850e-47 |
| Msa0165950 | Msa0319850 | 0.801340 | 9.428473e-49 | -8.615850e-47 |
| Msa0167480 | Msa0319850 | 0.837708 | 4.431580e-57 | -8.615850e-47 |
| Msa0174730 | Msa0319850 | 0.850240 | 1.930118e-60 | -8.615850e-47 |
| Msa0180020 | Msa0319850 | 0.843001 | 1.831896e-58 | -8.615850e-47 |
| Msa0181610 | Msa0319850 | 0.817350 | 3.452327e-52 | -8.615850e-47 |
| Msa0185900 | Msa0319850 | 0.818688 | 1.720507e-52 | -8.615850e-47 |
| Msa0186890 | Msa0319850 | 0.821482 | 3.944381e-53 | -8.615850e-47 |
| Msa0187690 | Msa0319850 | 0.823921 | 1.067821e-53 | -8.615850e-47 |
| Msa0187930 | Msa0319850 | 0.833890 | 4.112628e-56 | -8.615850e-47 |
| Msa0188350 | Msa0319850 | 0.814580 | 1.433078e-51 | -8.615850e-47 |
| Msa0194540 | Msa0319850 | 0.838145 | 3.421184e-57 | -8.615850e-47 |
| Msa0199690 | Msa0319850 | 0.811652 | 6.289530e-51 | -8.615850e-47 |
| Msa0199880 | Msa0319850 | 0.880378 | 5.768293e-70 | -8.615850e-47 |
| Msa0225180 | Msa0319850 | 0.816007 | 6.904301e-52 | -8.615850e-47 |
| Msa0226460 | Msa0319850 | 0.816983 | 4.173404e-52 | -8.615850e-47 |
| Msa0231100 | Msa0319850 | 0.821797 | 3.335503e-53 | -8.615850e-47 |
| Msa0241800 | Msa0319850 | 0.815044 | 1.131116e-51 | -8.615850e-47 |
| Msa0242230 | Msa0319850 | 0.829796 | 4.211421e-55 | -8.615850e-47 |
| Msa0242410 | Msa0319850 | 0.813153 | 2.956114e-51 | -8.615850e-47 |
| Msa0244780 | Msa0319850 | 0.832822 | 7.589967e-56 | -8.615850e-47 |
| Msa0268130 | Msa0319850 | 0.835594 | 1.532378e-56 | -8.615850e-47 |
| Msa0270320 | Msa0319850 | 0.829110 | 6.182228e-55 | -8.615850e-47 |
| Msa0280430 | Msa0319850 | 0.813841 | 2.086425e-51 | -8.615850e-47 |
| Msa0280610 | Msa0319850 | 0.828613 | 8.155953e-55 | -8.615850e-47 |
| Msa0298990 | Msa0319850 | 0.833292 | 5.798380e-56 | -8.615850e-47 |
| Msa0300120 | Msa0319850 | 0.843630 | 1.245352e-58 | -8.615850e-47 |
| Msa0304590 | Msa0319850 | 0.801183 | 1.015212e-48 | -8.615850e-47 |
| Msa0307850 | Msa0319850 | 0.800653 | 1.303009e-48 | -8.615850e-47 |
| Msa0319850 | Msa0339500 | 0.806015 | 1.010058e-49 | -8.615850e-47 |
| Msa0319850 | Msa0366890 | 0.805833 | 1.103064e-49 | -8.615850e-47 |
| Msa0319850 | Msa0369450 | 0.842552 | 2.411781e-58 | -8.615850e-47 |
| Msa0319850 | Msa0380300 | 0.818348 | 2.054504e-52 | -8.615850e-47 |
| Msa0319850 | Msa0398950 | 0.804599 | 1.999211e-49 | -8.615850e-47 |
| Msa0319850 | Msa0414800 | 0.813379 | 2.637230e-51 | -8.615850e-47 |
| Msa0319850 | Msa0416400 | 0.800761 | 1.238169e-48 | -8.615850e-47 |
| Msa0319850 | Msa0443390 | 0.813489 | 2.494528e-51 | -8.615850e-47 |
| Msa0319850 | Msa0449210 | 0.804389 | 2.211953e-49 | -8.615850e-47 |
| Msa0319850 | Msa0475790 | 0.802834 | 4.647265e-49 | -8.615850e-47 |
| Msa0319850 | Msa0497490 | 0.809705 | 1.658305e-50 | -8.615850e-47 |
| Msa0319850 | Msa0508590 | 0.822235 | 2.639878e-53 | -8.615850e-47 |
| Msa0319850 | Msa0508630 | 0.808813 | 2.575403e-50 | -8.615850e-47 |
| Msa0319850 | Msa0518390 | 0.808611 | 2.844753e-50 | -8.615850e-47 |
| Msa0319850 | Msa0524500 | 0.856625 | 2.835085e-62 | -8.615850e-47 |
| Msa0319850 | Msa0526540 | 0.846244 | 2.453834e-59 | -8.615850e-47 |
| Msa0319850 | Msa0529680 | 0.800069 | 1.713002e-48 | -8.615850e-47 |
| Msa0319850 | Msa0541860 | 0.818682 | 1.725891e-52 | -8.615850e-47 |
| Msa0319850 | Msa0552810 | 0.814858 | 1.243657e-51 | -8.615850e-47 |
| Msa0319850 | Msa0556060 | 0.804461 | 2.136814e-49 | -8.615850e-47 |
| Msa0319850 | Msa0571920 | 0.815561 | 8.680629e-52 | -8.615850e-47 |
| Msa0319850 | Msa0576940 | 0.839536 | 1.494103e-57 | -8.615850e-47 |
| Msa0319850 | Msa0580710 | 0.800407 | 1.462313e-48 | -8.615850e-47 |
| Msa0319850 | Msa0581070 | 0.827192 | 1.792008e-54 | -8.615850e-47 |
| Msa0319850 | Msa0581110 | 0.829214 | 5.833226e-55 | -8.615850e-47 |
| Msa0319850 | Msa0608320 | 0.837858 | 4.054608e-57 | -8.615850e-47 |
| Msa0319850 | Msa0615490 | 0.801196 | 1.009188e-48 | -8.615850e-47 |
| Msa0319850 | Msa0650920 | 0.809119 | 2.215155e-50 | -8.615850e-47 |
| Msa0319850 | Msa0661300 | 0.832259 | 1.046657e-55 | -8.615850e-47 |
| Msa0319850 | Msa0669520 | 0.806878 | 6.643214e-50 | -8.615850e-47 |
| Msa0319850 | Msa0677290 | 0.816257 | 6.070571e-52 | -8.615850e-47 |
| Msa0319850 | Msa0687630 | 0.814954 | 1.183924e-51 | -8.615850e-47 |
| Msa0319850 | Msa0692080 | 0.823462 | 1.367147e-53 | -8.615850e-47 |
| Msa0319850 | Msa0692840 | 0.828752 | 7.549471e-55 | -8.615850e-47 |
| Msa0319850 | Msa0692940 | 0.820449 | 6.819703e-53 | -8.615850e-47 |
| Msa0319850 | Msa0703230 | 0.825806 | 3.834472e-54 | -8.615850e-47 |
| Msa0319850 | Msa0709500 | 0.814492 | 1.498811e-51 | -8.615850e-47 |
| Msa0319850 | Msa0722020 | 0.803709 | 3.063471e-49 | -8.615850e-47 |
| Msa0319850 | Msa0734960 | 0.809294 | 2.031932e-50 | -8.615850e-47 |
| Msa0319850 | Msa0746420 | 0.806456 | 8.155971e-50 | -8.615850e-47 |
| Msa0319850 | Msa0749760 | 0.813395 | 2.615405e-51 | -8.615850e-47 |
| Msa0319850 | Msa0755340 | 0.827389 | 1.607118e-54 | -8.615850e-47 |
| Msa0319850 | Msa0763020 | 0.848794 | 4.883813e-60 | -8.615850e-47 |
| Msa0319850 | Msa0763070 | 0.851483 | 8.621257e-61 | -8.615850e-47 |
| Msa0319850 | Msa0766740 | 0.818626 | 1.776973e-52 | -8.615850e-47 |
| Msa0319850 | Msa0790850 | 0.817354 | 3.445050e-52 | -8.615850e-47 |
| Msa0319850 | Msa0805500 | 0.824104 | 9.673150e-54 | -8.615850e-47 |
| Msa0319850 | Msa0808800 | 0.802988 | 4.320762e-49 | -8.615850e-47 |
| Msa0319850 | Msa0824640 | 0.804509 | 2.087495e-49 | -8.615850e-47 |
| Msa0319850 | Msa0841940 | 0.808587 | 2.878504e-50 | -8.615850e-47 |
| Msa0319850 | Msa0847080 | 0.807496 | 4.914600e-50 | -8.615850e-47 |
| Msa0319850 | Msa0864010 | 0.805883 | 1.076421e-49 | -8.615850e-47 |
| Msa0319850 | Msa0900630 | 0.803760 | 2.988351e-49 | -8.615850e-47 |
| Msa0319850 | Msa0902760 | 0.819933 | 8.950229e-53 | -8.615850e-47 |
| Msa0319850 | Msa0943170 | 0.833535 | 5.043603e-56 | -8.615850e-47 |
| Msa0319850 | Msa0968590 | 0.842223 | 2.947446e-58 | -8.615850e-47 |
| Msa0319850 | Msa1004600 | 0.800155 | 1.645693e-48 | -8.615850e-47 |
| Msa0319850 | Msa1013400 | 0.825916 | 3.611371e-54 | -8.615850e-47 |
| Msa0319850 | Msa1013770 | 0.805566 | 1.254643e-49 | -8.615850e-47 |
| Msa0319850 | Msa1019240 | 0.834341 | 3.169765e-56 | -8.615850e-47 |
| Msa0319850 | Msa1019260 | 0.848618 | 5.466326e-60 | -8.615850e-47 |
| Msa0319850 | Msa1029070 | 0.800855 | 1.184935e-48 | -8.615850e-47 |
| Msa0319850 | Msa1041530 | 0.801988 | 6.943112e-49 | -8.615850e-47 |
| Msa0319850 | Msa1066490 | 0.835225 | 1.898925e-56 | -8.615850e-47 |
| Msa0319850 | Msa1081150 | 0.822728 | 2.028327e-53 | -8.615850e-47 |
| Msa0319850 | Msa1093530 | 0.824177 | 9.295170e-54 | -8.615850e-47 |
| Msa0319850 | Msa1104140 | 0.821725 | 3.465934e-53 | -8.615850e-47 |
| Msa0319850 | Msa1104210 | 0.849090 | 4.041613e-60 | -8.615850e-47 |
| Msa0319850 | Msa1106700 | 0.837586 | 4.764323e-57 | -8.615850e-47 |
| Msa0319850 | Msa1125760 | 0.811744 | 6.007091e-51 | -8.615850e-47 |
| Msa0319850 | Msa1126510 | 0.868095 | 8.418973e-66 | -8.615850e-47 |
| Msa0319850 | Msa1126770 | 0.816325 | 5.860228e-52 | -8.615850e-47 |
| Msa0319850 | Msa1126830 | 0.825393 | 4.805085e-54 | -8.615850e-47 |
| Msa0319850 | Msa1128600 | 0.803794 | 2.941448e-49 | -8.615850e-47 |
| Msa0319850 | Msa1131560 | 0.806059 | 9.886629e-50 | -8.615850e-47 |
| Msa0319850 | Msa1134110 | 0.812738 | 3.644375e-51 | -8.615850e-47 |
| Msa0319850 | Msa1165870 | 0.807689 | 4.471809e-50 | -8.615850e-47 |
| Msa0319850 | Msa1165940 | 0.819367 | 1.205230e-52 | -8.615850e-47 |
| Msa0319850 | Msa1166330 | 0.804240 | 2.375899e-49 | -8.615850e-47 |
| Msa0319850 | Msa1166400 | 0.802811 | 4.700237e-49 | -8.615850e-47 |
| Msa0319850 | Msa1166860 | 0.860970 | 1.424551e-63 | -8.615850e-47 |
| Msa0319850 | Msa1166870 | 0.812732 | 3.656438e-51 | -8.615850e-47 |
| Msa0319850 | Msa1171360 | 0.813639 | 2.311579e-51 | -8.615850e-47 |
| Msa0319850 | Msa1184370 | 0.823172 | 1.598349e-53 | -8.615850e-47 |
| Msa0319850 | Msa1218600 | 0.832866 | 7.404384e-56 | -8.615850e-47 |
| Msa0319850 | Msa1225700 | 0.813945 | 1.979559e-51 | -8.615850e-47 |
| Msa0319850 | Msa1227690 | 0.818021 | 2.436355e-52 | -8.615850e-47 |
| Msa0319850 | Msa1251160 | 0.807550 | 4.784334e-50 | -8.615850e-47 |
| Msa0319850 | Msa1257510 | 0.821674 | 3.560895e-53 | -8.615850e-47 |
| Msa0319850 | Msa1265630 | 0.809018 | 2.328470e-50 | -8.615850e-47 |
| Msa0319850 | Msa1281190 | 0.809124 | 2.209662e-50 | -8.615850e-47 |
| Msa0319850 | Msa1283170 | 0.819615 | 1.058196e-52 | -8.615850e-47 |
| Msa0319850 | Msa1283910 | 0.803633 | 3.175887e-49 | -8.615850e-47 |
| Msa0319850 | Msa1295110 | 0.821571 | 3.762680e-53 | -8.615850e-47 |
| Msa0319850 | Msa1307950 | 0.803778 | 2.962848e-49 | -8.615850e-47 |
| Msa0319850 | Msa1363330 | 0.847470 | 1.132988e-59 | -8.615850e-47 |
| Msa0319850 | Msa1365150 | 0.804520 | 2.076681e-49 | -8.615850e-47 |
| Msa0319850 | Msa1367590 | 0.817167 | 3.795523e-52 | -8.615850e-47 |
| Msa0319850 | Msa1367880 | 0.810188 | 1.305066e-50 | -8.615850e-47 |
| Msa0319850 | Msa1370860 | 0.800739 | 1.251471e-48 | -8.615850e-47 |
| Msa0319850 | Msa1374060 | 0.817855 | 2.655042e-52 | -8.615850e-47 |
| Msa0319850 | Msa1376650 | 0.821708 | 3.496380e-53 | -8.615850e-47 |
| Msa0319850 | Msa1379760 | 0.849129 | 3.941527e-60 | -8.615850e-47 |
| Msa0319850 | Msa1381350 | 0.804731 | 1.876550e-49 | -8.615850e-47 |
| Msa0319850 | Msa1382560 | 0.807125 | 5.888983e-50 | -8.615850e-47 |
| Msa0319850 | Msa1382780 | 0.806525 | 7.885394e-50 | -8.615850e-47 |
| Msa0319850 | Msa1386600 | 0.846446 | 2.161447e-59 | -8.615850e-47 |
| Msa0319850 | Msa1394290 | 0.806843 | 6.754389e-50 | -8.615850e-47 |
| Msa0319850 | Msa1397940 | 0.815884 | 7.354402e-52 | -8.615850e-47 |
| Msa0319850 | Msa1446810 | 0.816928 | 4.294477e-52 | -8.615850e-47 |
| Msa0319850 | Msa1448690 | 0.829331 | 5.464061e-55 | -8.615850e-47 |
| Msa0319850 | Msa1450280 | 0.839800 | 1.275441e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319850 | MtrunA17_Chr2g0294631 | 100.000 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 1.97e-84 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319850 | AT3G16980.1 | 88.596 | 114 | 13 | 0 | 1 | 114 | 1 | 114 | 2.21e-76 | 221 |
| Msa0319850 | AT4G16265.1 | 87.719 | 114 | 14 | 0 | 1 | 114 | 1 | 114 | 3.00e-76 | 221 |
| Msa0319850 | AT4G16265.2 | 86.538 | 104 | 14 | 0 | 11 | 114 | 30 | 133 | 2.71e-68 | 201 |
Find 59 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGATAGTATTTGTTTAT+AGG | 0.188566 | 2_4:-19904192 | Msa0319850:three_prime_UTR |
| TCAAGGTTTAATTCATCTTT+TGG | 0.226010 | 2_4:-19904489 | Msa0319850:three_prime_UTR |
| GTTTCTTATTAAACGCTTAT+TGG | 0.227999 | 2_4:-19904170 | Msa0319850:three_prime_UTR |
| AGATGAATTAAACCTTGATT+TGG | 0.243621 | 2_4:+19904494 | None:intergenic |
| TTAACAAACCAAGGAAATTC+AGG | 0.273601 | 2_4:+19904266 | None:intergenic |
| TTCTGTTCTCTGTCTTCCTT+AGG | 0.297432 | 2_4:+19906837 | None:intergenic |
| CTCCAGCGGTGTCCACAGTT+TGG | 0.327997 | 2_4:+19904537 | None:intergenic |
| TCCAGCGGTGTCCACAGTTT+GGG | 0.347521 | 2_4:+19904538 | None:intergenic |
| GTTGTCGATCAAATGATTAA+TGG | 0.359170 | 2_4:-19904332 | Msa0319850:three_prime_UTR |
| CAGAGAAGAGAGTGTGAGTT+AGG | 0.372689 | 2_4:-19907042 | Msa0319850:five_prime_UTR |
| GATGAATTAAACCTTGATTT+GGG | 0.373222 | 2_4:+19904495 | None:intergenic |
| TGGTACTCATCTTGTCTTGT+TGG | 0.380839 | 2_4:+19906997 | None:intergenic |
| TCCTTGGTTTGTTAACTTGA+GGG | 0.394399 | 2_4:-19904258 | Msa0319850:three_prime_UTR |
| TCTCTAATCTGTGTTAAAAC+AGG | 0.413002 | 2_4:+19904383 | None:intergenic |
| TGAGCGGACTCAAGTGTTGC+AGG | 0.420762 | 2_4:-19906047 | Msa0319850:CDS |
| TTCCTTGGTTTGTTAACTTG+AGG | 0.421678 | 2_4:-19904259 | Msa0319850:three_prime_UTR |
| TGACATAAAGAGAGTGGAAA+AGG | 0.422118 | 2_4:-19907100 | Msa0319850:five_prime_UTR |
| GGGGAAATGTGGAATCAAAA+TGG | 0.422261 | 2_4:-19904233 | Msa0319850:three_prime_UTR |
| TGGATGGCCCTGAATTTCCT+TGG | 0.426978 | 2_4:-19904274 | Msa0319850:three_prime_UTR |
| CCATTCACGGCAAAACTTCA+TGG | 0.428840 | 2_4:+19906977 | None:intergenic |
| GAGTGGAAAAGGAGAGAAGT+GGG | 0.435862 | 2_4:-19907089 | Msa0319850:five_prime_UTR |
| TCTGTTCTCTGTCTTCCTTA+GGG | 0.436557 | 2_4:+19906838 | None:intergenic |
| ACTTGAGGGGTGGGGAAATG+TGG | 0.445583 | 2_4:-19904244 | Msa0319850:three_prime_UTR |
| CGTCATTCCTTCCTCGCCTC+TGG | 0.448115 | 2_4:+19904581 | None:intergenic |
| GTTTGTTAACTTGAGGGGTG+GGG | 0.461288 | 2_4:-19904252 | Msa0319850:three_prime_UTR |
| GGTTTGTTAACTTGAGGGGT+GGG | 0.465641 | 2_4:-19904253 | Msa0319850:three_prime_UTR |
| TTGAACGCAGCGAACAGCCT+TGG | 0.492972 | 2_4:+19905994 | None:intergenic |
| GCCTTGGTGCGAGGAAGAGT+TGG | 0.493325 | 2_4:+19906010 | None:intergenic |
| TGGTTTGTTAACTTGAGGGG+TGG | 0.496225 | 2_4:-19904254 | Msa0319850:three_prime_UTR |
| TCGACAACTACAGTTAAAAC+AGG | 0.496862 | 2_4:+19904347 | None:intergenic |
| GCAACTGCCAGAGGCGAGGA+AGG | 0.499088 | 2_4:-19904588 | Msa0319850:CDS |
| AATTAAACCTTGATTTGGGC+AGG | 0.501474 | 2_4:+19904499 | None:intergenic |
| CCTTGGTTTGTTAACTTGAG+GGG | 0.505784 | 2_4:-19904257 | Msa0319850:three_prime_UTR |
| TTGCCGCAATTGCGATCACC+AGG | 0.506620 | 2_4:-19906799 | Msa0319850:intron |
| CGCTGCGTTCAATGCAATCA+TGG | 0.517046 | 2_4:-19905983 | Msa0319850:CDS |
| GAGTAGGAACGAACCATTCA+CGG | 0.528356 | 2_4:+19906964 | None:intergenic |
| AAGTATTGACATAAAGAGAG+TGG | 0.546839 | 2_4:-19907106 | None:intergenic |
| ACCCAAACTGTGGACACCGC+TGG | 0.549152 | 2_4:-19904539 | Msa0319850:CDS |
| TAACAAACCAAGGAAATTCA+GGG | 0.550436 | 2_4:+19904267 | None:intergenic |
| AGAGTGGAAAAGGAGAGAAG+TGG | 0.562002 | 2_4:-19907090 | Msa0319850:five_prime_UTR |
| CTCATTATGTTGTCCACTCT+AGG | 0.568474 | 2_4:-19904455 | Msa0319850:three_prime_UTR |
| GGAAAAGGAGAGAAGTGGGA+GGG | 0.575224 | 2_4:-19907085 | Msa0319850:five_prime_UTR |
| CGCAATTGCGGCAAGCGTAG+AGG | 0.583746 | 2_4:+19906808 | None:intergenic |
| TGGAAAAGGAGAGAAGTGGG+AGG | 0.583773 | 2_4:-19907086 | Msa0319850:five_prime_UTR |
| ATTAATGGACAAATCCCTGC+GGG | 0.597144 | 2_4:-19904317 | Msa0319850:three_prime_UTR |
| TAACAACATTCTGTACCCTA+AGG | 0.599627 | 2_4:-19906853 | Msa0319850:CDS |
| CAGCGAACAGCCTTGGTGCG+AGG | 0.599712 | 2_4:+19906001 | None:intergenic |
| ATTTCAGCATGACAACCCGC+AGG | 0.601431 | 2_4:+19904302 | None:intergenic |
| GTTTGCTGCAACCCAAACTG+TGG | 0.602356 | 2_4:-19904549 | Msa0319850:CDS |
| GAACCTGGTGATCGCAATTG+CGG | 0.608612 | 2_4:+19906796 | None:intergenic |
| CCCCTCAAGTTAACAAACCA+AGG | 0.612225 | 2_4:+19904257 | None:intergenic |
| TTTCAGCATGACAACCCGCA+GGG | 0.626158 | 2_4:+19904303 | None:intergenic |
| GCAGGCAACTGCCAGAGGCG+AGG | 0.628976 | 2_4:-19904592 | Msa0319850:intron |
| CATATGCAGGCAACTGCCAG+AGG | 0.641126 | 2_4:-19904597 | Msa0319850:intron |
| TCCAACTCTTCCTCGCACCA+AGG | 0.666434 | 2_4:-19906011 | Msa0319850:CDS |
| TTCACCACTCTGTTGCTGAG+CGG | 0.687981 | 2_4:-19906063 | Msa0319850:CDS |
| GAGTCCGCTCAGCAACAGAG+TGG | 0.694701 | 2_4:+19906059 | None:intergenic |
| ACAAAACTCAGTCTCTCCAG+CGG | 0.698214 | 2_4:+19904523 | None:intergenic |
| GATTAATGGACAAATCCCTG+CGG | 0.757994 | 2_4:-19904318 | Msa0319850:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTAATTA+GGG | - | chr2_4:19904625-19904644 | Msa0319850:intron | 0.0% |
| !! | AAAAAAAAAAAAAAACAGAT+TGG | + | chr2_4:19904666-19904685 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTGAAGA+TGG | - | chr2_4:19904679-19904698 | Msa0319850:intron | 10.0% |
| !!! | TTGTTTTCATAAAATTATTA+TGG | - | chr2_4:19904873-19904892 | Msa0319850:intron | 10.0% |
| !!! | TTATAATATTTTCTTTTTAG+TGG | - | chr2_4:19905962-19905981 | Msa0319850:intron | 10.0% |
| !!! | AAAAAAAATAATGGGTAAAA+GGG | + | chr2_4:19904287-19904306 | None:intergenic | 15.0% |
| !!! | TAAAAAAAATAATGGGTAAA+AGG | + | chr2_4:19904288-19904307 | None:intergenic | 15.0% |
| !! | AAACTCAAAAAACAGAAAAT+GGG | + | chr2_4:19904462-19904481 | None:intergenic | 20.0% |
| !! | TAATTAGGGTTTAACAATTA+TGG | - | chr2_4:19904639-19904658 | Msa0319850:intron | 20.0% |
| !! | AATTAGGGTTTAACAATTAT+GGG | - | chr2_4:19904640-19904659 | Msa0319850:intron | 20.0% |
| !! | TGTTCTAATTTGATCAATTT+AGG | - | chr2_4:19904723-19904742 | Msa0319850:intron | 20.0% |
| !!! | ATAAGCTACTTTTTAACAAA+AGG | - | chr2_4:19904813-19904832 | Msa0319850:intron | 20.0% |
| !! | AATAAGCTGAAAGTAATTTA+TGG | - | chr2_4:19904908-19904927 | Msa0319850:intron | 20.0% |
| !!! | TTGATTTTTAGAAGTTTTGA+AGG | - | chr2_4:19905303-19905322 | Msa0319850:intron | 20.0% |
| !!! | CTTGAGTTTTATATATTTTG+TGG | - | chr2_4:19905409-19905428 | Msa0319850:intron | 20.0% |
| !! | AATTCCAATATGAATTGTTT+AGG | - | chr2_4:19905704-19905723 | Msa0319850:intron | 20.0% |
| !! | ATTCCAATATGAATTGTTTA+GGG | - | chr2_4:19905705-19905724 | Msa0319850:intron | 20.0% |
| !!! | TATTGTCTTTATCTTGTTTT+TGG | - | chr2_4:19905817-19905836 | Msa0319850:intron | 20.0% |
| !!! | AATTTTACTTTTTTTGTGTG+TGG | + | chr2_4:19906271-19906290 | None:intergenic | 20.0% |
| !! | AATGTGTGTATATTGAATAA+AGG | + | chr2_4:19906354-19906373 | None:intergenic | 20.0% |
| !!! | AATTTTTTATATGCATATGC+AGG | - | chr2_4:19906578-19906597 | Msa0319850:intron | 20.0% |
| !! | TTGAGATAGTATTTGTTTAT+AGG | - | chr2_4:19906996-19907015 | Msa0319850:exon | 20.0% |
| !!! | TTTTTTACACAGTGATGATT+CGG | + | chr2_4:19904432-19904451 | None:intergenic | 25.0% |
| ! | CAAACTCAAAAAACAGAAAA+TGG | + | chr2_4:19904463-19904482 | None:intergenic | 25.0% |
| !!! | AGCATTATTAGCTTATTTTG+AGG | - | chr2_4:19904546-19904565 | Msa0319850:CDS | 25.0% |
| !!! | GCATTATTAGCTTATTTTGA+GGG | - | chr2_4:19904547-19904566 | Msa0319850:CDS | 25.0% |
| !!! | CATTATTAGCTTATTTTGAG+GGG | - | chr2_4:19904548-19904567 | Msa0319850:CDS | 25.0% |
| ! | GGATAAATAGCTTAATTAAG+TGG | - | chr2_4:19904754-19904773 | Msa0319850:intron | 25.0% |
| ! | AAATTATTATGGAGAGCTTA+TGG | - | chr2_4:19904884-19904903 | Msa0319850:intron | 25.0% |
| ! | CATAGTAGATAAGCTTAAAT+AGG | - | chr2_4:19904985-19905004 | Msa0319850:intron | 25.0% |
| ! | AACAAGCATATGTCATATAA+AGG | + | chr2_4:19905025-19905044 | None:intergenic | 25.0% |
| !!! | ATTTTGACTTTAAAGTAGAG+TGG | - | chr2_4:19905352-19905371 | Msa0319850:intron | 25.0% |
| !! | AAAAAACGTATACGTTTTGA+AGG | - | chr2_4:19905516-19905535 | Msa0319850:intron | 25.0% |
| ! | TAACCCTAAACAATTCATAT+TGG | + | chr2_4:19905711-19905730 | None:intergenic | 25.0% |
| ! | ACAAGATAAAGACAATAGAA+AGG | + | chr2_4:19905814-19905833 | None:intergenic | 25.0% |
| !! | AGTAACTTGCATAAAATCAA+AGG | + | chr2_4:19906213-19906232 | None:intergenic | 25.0% |
| ! | TTTCTTCATTGCTTATGAAA+GGG | + | chr2_4:19906464-19906483 | None:intergenic | 25.0% |
| ! | ATTTCTTCATTGCTTATGAA+AGG | + | chr2_4:19906465-19906484 | None:intergenic | 25.0% |
| ! | AAAATGCATTCAAAAGAGTA+GGG | + | chr2_4:19906498-19906517 | None:intergenic | 25.0% |
| ! | AAAAATGCATTCAAAAGAGT+AGG | + | chr2_4:19906499-19906518 | None:intergenic | 25.0% |
| ! | GATGAATTAAACCTTGATTT+GGG | + | chr2_4:19906696-19906715 | None:intergenic | 25.0% |
| ! | AGATGAATTAAACCTTGATT+TGG | + | chr2_4:19906697-19906716 | None:intergenic | 25.0% |
| !! | TCAAGGTTTAATTCATCTTT+TGG | - | chr2_4:19906699-19906718 | Msa0319850:intron | 25.0% |
| ! | TTATTAAAAATCGAGTGATG+TGG | - | chr2_4:19906776-19906795 | Msa0319850:intron | 25.0% |
| ! | TATTAAAAATCGAGTGATGT+GGG | - | chr2_4:19906777-19906796 | Msa0319850:intron | 25.0% |
| !! | TTGTCATGCTGAAATTTTTA+TGG | - | chr2_4:19906894-19906913 | Msa0319850:intron | 25.0% |
| ! | GTTTCTTATTAAACGCTTAT+TGG | - | chr2_4:19907018-19907037 | Msa0319850:five_prime_UTR | 25.0% |
| ! | TTTTTACACAGTGATGATTC+GGG | + | chr2_4:19904431-19904450 | None:intergenic | 30.0% |
| AAGTTATAGAGGGTTTATGA+AGG | - | chr2_4:19904602-19904621 | Msa0319850:intron | 30.0% | |
| TTAAGCTATTTATCCCAACA+AGG | + | chr2_4:19904749-19904768 | None:intergenic | 30.0% | |
| ATGTCATATAAAGGTCTGTT+TGG | + | chr2_4:19905016-19905035 | None:intergenic | 30.0% | |
| ! | TTGTTTGACTAGTTGTTTAC+TGG | - | chr2_4:19905040-19905059 | Msa0319850:intron | 30.0% |
| !!! | TGTTGTTGTTTTTGTTGTTC+AGG | - | chr2_4:19905066-19905085 | Msa0319850:intron | 30.0% |
| ! | CATAGAACAGAAATTTTACC+TGG | + | chr2_4:19905246-19905265 | None:intergenic | 30.0% |
| CAGGTAAAATTTCTGTTCTA+TGG | - | chr2_4:19905244-19905263 | Msa0319850:intron | 30.0% | |
| ! | GTAGAGTCATAGGAATTTTA+AGG | - | chr2_4:19905374-19905393 | Msa0319850:intron | 30.0% |
| TTCACTTCTTCAGAAACTAA+GGG | + | chr2_4:19905478-19905497 | None:intergenic | 30.0% | |
| ATTCACTTCTTCAGAAACTA+AGG | + | chr2_4:19905479-19905498 | None:intergenic | 30.0% | |
| AGAAGTGAATCTTAGAAAGA+AGG | - | chr2_4:19905489-19905508 | Msa0319850:intron | 30.0% | |
| TGCTATAATCTACAACATTC+AGG | + | chr2_4:19905609-19905628 | None:intergenic | 30.0% | |
| ! | TTTAGGGTTATAAAGTGTCT+CGG | - | chr2_4:19905721-19905740 | Msa0319850:intron | 30.0% |
| TAGCGTAAATGAATATACGA+AGG | - | chr2_4:19906015-19906034 | Msa0319850:CDS | 30.0% | |
| AGAGTGAGTTTACAACATAT+AGG | + | chr2_4:19906155-19906174 | None:intergenic | 30.0% | |
| GTATCTCTCATATGTTGAAT+AGG | - | chr2_4:19906175-19906194 | Msa0319850:intron | 30.0% | |
| ! | ATGTTGAATAGGAAACGTTT+TGG | - | chr2_4:19906186-19906205 | Msa0319850:intron | 30.0% |
| GAGTATAGAAATGTCATTGA+GGG | + | chr2_4:19906328-19906347 | None:intergenic | 30.0% | |
| AGAGTATAGAAATGTCATTG+AGG | + | chr2_4:19906329-19906348 | None:intergenic | 30.0% | |
| !! | ATATCCACATTACTTTTAGC+GGG | + | chr2_4:19906385-19906404 | None:intergenic | 30.0% |
| !! | CATATCCACATTACTTTTAG+CGG | + | chr2_4:19906386-19906405 | None:intergenic | 30.0% |
| AAAAGTAATGTGGATATGTC+AGG | - | chr2_4:19906388-19906407 | Msa0319850:intron | 30.0% | |
| AAACCCTGTTCTATTACTTA+TGG | - | chr2_4:19906547-19906566 | Msa0319850:intron | 30.0% | |
| GATCCATAAGTAATAGAACA+GGG | + | chr2_4:19906553-19906572 | None:intergenic | 30.0% | |
| TGATCCATAAGTAATAGAAC+AGG | + | chr2_4:19906554-19906573 | None:intergenic | 30.0% | |
| ! | AGGTTTAATTCATCTTTTGG+AGG | - | chr2_4:19906702-19906721 | Msa0319850:intron | 30.0% |
| ATTAAAAATCGAGTGATGTG+GGG | - | chr2_4:19906778-19906797 | Msa0319850:intron | 30.0% | |
| TCTCTAATCTGTGTTAAAAC+AGG | + | chr2_4:19906808-19906827 | None:intergenic | 30.0% | |
| GTTGTCGATCAAATGATTAA+TGG | - | chr2_4:19906856-19906875 | Msa0319850:CDS | 30.0% | |
| ! | CATGCTGAAATTTTTATGGA+TGG | - | chr2_4:19906898-19906917 | Msa0319850:intron | 30.0% |
| TAACAAACCAAGGAAATTCA+GGG | + | chr2_4:19906924-19906943 | None:intergenic | 30.0% | |
| TTAACAAACCAAGGAAATTC+AGG | + | chr2_4:19906925-19906944 | None:intergenic | 30.0% | |
| !! | GAGCAGTGATATTTTAAAGA+GGG | + | chr2_4:19907059-19907078 | None:intergenic | 30.0% |
| !! | AGAGCAGTGATATTTTAAAG+AGG | + | chr2_4:19907060-19907079 | None:intergenic | 30.0% |
| AAGATGAAGATGAAGAGAGT+AGG | + | chr2_4:19904243-19904262 | None:intergenic | 35.0% | |
| TAACAACATTCTGTACCCTA+AGG | - | chr2_4:19904335-19904354 | Msa0319850:three_prime_UTR | 35.0% | |
| GGAAATTGAAATAACGAACC+TGG | + | chr2_4:19904410-19904429 | None:intergenic | 35.0% | |
| ! | TTTGTGTCGCTAAGTTATAG+AGG | - | chr2_4:19904591-19904610 | Msa0319850:CDS | 35.0% |
| ! | TTGTGTCGCTAAGTTATAGA+GGG | - | chr2_4:19904592-19904611 | Msa0319850:intron | 35.0% |
| ! | TTTGAAGATGGTGTTGAAAG+AGG | - | chr2_4:19904691-19904710 | Msa0319850:intron | 35.0% |
| ! | TTGATCAATTTAGGCCTTGT+TGG | - | chr2_4:19904732-19904751 | Msa0319850:intron | 35.0% |
| !! | TGATCAATTTAGGCCTTGTT+GGG | - | chr2_4:19904733-19904752 | Msa0319850:intron | 35.0% |
| TAAGTACTTGTGAAACAGCT+CGG | + | chr2_4:19904964-19904983 | None:intergenic | 35.0% | |
| !!! | TGTTGTTTTTGTTGTTCAGG+AGG | - | chr2_4:19905069-19905088 | Msa0319850:intron | 35.0% |
| !!! | AGGAAAGCATTTTCATGCTA+AGG | - | chr2_4:19905536-19905555 | Msa0319850:intron | 35.0% |
| !!! | GGAAAGCATTTTCATGCTAA+GGG | - | chr2_4:19905537-19905556 | Msa0319850:intron | 35.0% |
| ! | TTTTCATGCTAAGGGATAAG+TGG | - | chr2_4:19905545-19905564 | Msa0319850:intron | 35.0% |
| !! | ATCTACAACATTCAGGTTGT+GGG | + | chr2_4:19905602-19905621 | None:intergenic | 35.0% |
| !! | AATCTACAACATTCAGGTTG+TGG | + | chr2_4:19905603-19905622 | None:intergenic | 35.0% |
| ! | ATTTAAAGCTGAACTTGTGG+TGG | + | chr2_4:19905877-19905896 | None:intergenic | 35.0% |
| ! | GACATTTAAAGCTGAACTTG+TGG | + | chr2_4:19905880-19905899 | None:intergenic | 35.0% |
| !! | CAAGTTCAGCTTTAAATGTC+AGG | - | chr2_4:19905880-19905899 | Msa0319850:intron | 35.0% |
| AATCTCCATTGTAGTGTTCA+TGG | - | chr2_4:19905910-19905929 | Msa0319850:intron | 35.0% | |
| TAGAACCATGAACACTACAA+TGG | + | chr2_4:19905918-19905937 | None:intergenic | 35.0% | |
| ATTGTAGTGTTCATGGTTCT+AGG | - | chr2_4:19905917-19905936 | Msa0319850:intron | 35.0% | |
| TGAATATACGAAGGCTTCAT+AGG | - | chr2_4:19906024-19906043 | Msa0319850:CDS | 35.0% | |
| GAATATACGAAGGCTTCATA+GGG | - | chr2_4:19906025-19906044 | Msa0319850:CDS | 35.0% | |
| TGTGTGGTGAAGAACTAATT+TGG | + | chr2_4:19906255-19906274 | None:intergenic | 35.0% | |
| !! | AATTAAACCTTGATTTGGGC+AGG | + | chr2_4:19906692-19906711 | None:intergenic | 35.0% |
| ! | TTTTCTCTTCTATCCTAGAG+TGG | + | chr2_4:19906749-19906768 | None:intergenic | 35.0% |
| TCGACAACTACAGTTAAAAC+AGG | + | chr2_4:19906844-19906863 | None:intergenic | 35.0% | |
| !! | TTCCTTGGTTTGTTAACTTG+AGG | - | chr2_4:19906929-19906948 | Msa0319850:intron | 35.0% |
| !! | TCCTTGGTTTGTTAACTTGA+GGG | - | chr2_4:19906930-19906949 | Msa0319850:intron | 35.0% |
| CTCAAAGCTCAACACAAAAA+TGG | + | chr2_4:19906981-19907000 | None:intergenic | 35.0% | |
| TGGTACTCATCTTGTCTTGT+TGG | + | chr2_4:19904194-19904213 | None:intergenic | 40.0% | |
| TCTGTTCTCTGTCTTCCTTA+GGG | + | chr2_4:19904353-19904372 | None:intergenic | 40.0% | |
| TTCTGTTCTCTGTCTTCCTT+AGG | + | chr2_4:19904354-19904373 | None:intergenic | 40.0% | |
| GTCAAAATCAAGAGCGACTT+GGG | + | chr2_4:19905340-19905359 | None:intergenic | 40.0% | |
| AGTCAAAATCAAGAGCGACT+TGG | + | chr2_4:19905341-19905360 | None:intergenic | 40.0% | |
| AAGTAGAGTGGTAGAGTCAT+AGG | - | chr2_4:19905364-19905383 | Msa0319850:intron | 40.0% | |
| TGACCTATTGCATAGATGCT+AGG | - | chr2_4:19905748-19905767 | Msa0319850:intron | 40.0% | |
| CAGTGTTTAGTGTTCAGCTA+TGG | + | chr2_4:19906298-19906317 | None:intergenic | 40.0% | |
| CATAGCTGAACACTAAACAC+TGG | - | chr2_4:19906296-19906315 | Msa0319850:intron | 40.0% | |
| GTAATGTGGATATGTCAGGT+AGG | - | chr2_4:19906392-19906411 | Msa0319850:intron | 40.0% | |
| CTCATTATGTTGTCCACTCT+AGG | - | chr2_4:19906733-19906752 | Msa0319850:intron | 40.0% | |
| ! | GATTAATGGACAAATCCCTG+CGG | - | chr2_4:19906870-19906889 | Msa0319850:intron | 40.0% |
| ! | ATTAATGGACAAATCCCTGC+GGG | - | chr2_4:19906871-19906890 | Msa0319850:intron | 40.0% |
| !! | CCTTGGTTTGTTAACTTGAG+GGG | - | chr2_4:19906931-19906950 | Msa0319850:intron | 40.0% |
| GGGGAAATGTGGAATCAAAA+TGG | - | chr2_4:19906955-19906974 | Msa0319850:intron | 40.0% | |
| AGAGTGGAAAAGGAGAGAAG+TGG | - | chr2_4:19904098-19904117 | Msa0319850:three_prime_UTR | 45.0% | |
| GAGTGGAAAAGGAGAGAAGT+GGG | - | chr2_4:19904099-19904118 | Msa0319850:three_prime_UTR | 45.0% | |
| ! | CAGAGAAGAGAGTGTGAGTT+AGG | - | chr2_4:19904146-19904165 | Msa0319850:three_prime_UTR | 45.0% |
| CCATTCACGGCAAAACTTCA+TGG | + | chr2_4:19904214-19904233 | None:intergenic | 45.0% | |
| ! | CCATGAAGTTTTGCCGTGAA+TGG | - | chr2_4:19904211-19904230 | Msa0319850:three_prime_UTR | 45.0% |
| GAGTAGGAACGAACCATTCA+CGG | + | chr2_4:19904227-19904246 | None:intergenic | 45.0% | |
| AAACAGCTCGGAAGAGCTTA+TGG | + | chr2_4:19904952-19904971 | None:intergenic | 45.0% | |
| ! | TGGTGAAGCTGTGTTTTTCC+AGG | - | chr2_4:19905225-19905244 | Msa0319850:intron | 45.0% |
| CCTCCTAGCATCTATGCAAT+AGG | + | chr2_4:19905754-19905773 | None:intergenic | 45.0% | |
| CCTATTGCATAGATGCTAGG+AGG | - | chr2_4:19905751-19905770 | Msa0319850:intron | 45.0% | |
| ACCTGTCTAACTGGGTCATA+GGG | + | chr2_4:19906081-19906100 | None:intergenic | 45.0% | |
| GTGCCATCTGTCAAACAGTT+TGG | - | chr2_4:19906109-19906128 | Msa0319850:intron | 45.0% | |
| CTGCCAAACTGTTTGACAGA+TGG | + | chr2_4:19906115-19906134 | None:intergenic | 45.0% | |
| TCTGCCCGCTAAAAGTAATG+TGG | - | chr2_4:19906378-19906397 | Msa0319850:intron | 45.0% | |
| ACAAAACTCAGTCTCTCCAG+CGG | + | chr2_4:19906668-19906687 | None:intergenic | 45.0% | |
| ! | TTTTGTGCCTGCCCAAATCA+AGG | - | chr2_4:19906682-19906701 | Msa0319850:intron | 45.0% |
| CCCCTCAAGTTAACAAACCA+AGG | + | chr2_4:19906934-19906953 | None:intergenic | 45.0% | |
| !! | TGGTTTGTTAACTTGAGGGG+TGG | - | chr2_4:19906934-19906953 | Msa0319850:intron | 45.0% |
| !! | GGTTTGTTAACTTGAGGGGT+GGG | - | chr2_4:19906935-19906954 | Msa0319850:intron | 45.0% |
| ! | GTTTGTTAACTTGAGGGGTG+GGG | - | chr2_4:19906936-19906955 | Msa0319850:intron | 45.0% |
| !! | TTAGAAATAAAAAAAATAAT+GGG | + | chr2_4:19904295-19904314 | None:intergenic | 5.0% |
| !! | TTTAGAAATAAAAAAAATAA+TGG | + | chr2_4:19904296-19904315 | None:intergenic | 5.0% |
| !!! | GATTTTTTTTTTTTTTAATT+AGG | - | chr2_4:19904624-19904643 | Msa0319850:intron | 5.0% |
| TGGAAAAGGAGAGAAGTGGG+AGG | - | chr2_4:19904102-19904121 | Msa0319850:three_prime_UTR | 50.0% | |
| GGAAAAGGAGAGAAGTGGGA+GGG | - | chr2_4:19904103-19904122 | Msa0319850:three_prime_UTR | 50.0% | |
| GAACCTGGTGATCGCAATTG+CGG | + | chr2_4:19904395-19904414 | None:intergenic | 50.0% | |
| TTCACCACTCTGTTGCTGAG+CGG | - | chr2_4:19905125-19905144 | Msa0319850:intron | 50.0% | |
| CGCTGCGTTCAATGCAATCA+TGG | - | chr2_4:19905205-19905224 | Msa0319850:intron | 50.0% | |
| TCCCTATGACCCAGTTAGAC+AGG | - | chr2_4:19906077-19906096 | Msa0319850:CDS | 50.0% | |
| CACCTGTCTAACTGGGTCAT+AGG | + | chr2_4:19906082-19906101 | None:intergenic | 50.0% | |
| CTATGACCCAGTTAGACAGG+TGG | - | chr2_4:19906080-19906099 | Msa0319850:CDS | 50.0% | |
| AAGCTGCCACCTGTCTAACT+GGG | + | chr2_4:19906089-19906108 | None:intergenic | 50.0% | |
| ! | GTTTGCTGCAACCCAAACTG+TGG | - | chr2_4:19906639-19906658 | Msa0319850:intron | 50.0% |
| TTTCAGCATGACAACCCGCA+GGG | + | chr2_4:19906888-19906907 | None:intergenic | 50.0% | |
| ATTTCAGCATGACAACCCGC+AGG | + | chr2_4:19906889-19906908 | None:intergenic | 50.0% | |
| TGGATGGCCCTGAATTTCCT+TGG | - | chr2_4:19906914-19906933 | Msa0319850:intron | 50.0% | |
| TTGCCGCAATTGCGATCACC+AGG | - | chr2_4:19904389-19904408 | Msa0319850:three_prime_UTR | 55.0% | |
| ! | TGAGCGGACTCAAGTGTTGC+AGG | - | chr2_4:19905141-19905160 | Msa0319850:intron | 55.0% |
| TCCAACTCTTCCTCGCACCA+AGG | - | chr2_4:19905177-19905196 | Msa0319850:intron | 55.0% | |
| TTGAACGCAGCGAACAGCCT+TGG | + | chr2_4:19905197-19905216 | None:intergenic | 55.0% | |
| CAAGCTGCCACCTGTCTAAC+TGG | + | chr2_4:19906090-19906109 | None:intergenic | 55.0% | |
| CATATGCAGGCAACTGCCAG+AGG | - | chr2_4:19906591-19906610 | Msa0319850:intron | 55.0% | |
| TCCAGCGGTGTCCACAGTTT+GGG | + | chr2_4:19906653-19906672 | None:intergenic | 55.0% | |
| ACTTGAGGGGTGGGGAAATG+TGG | - | chr2_4:19906944-19906963 | Msa0319850:intron | 55.0% | |
| CGCAATTGCGGCAAGCGTAG+AGG | + | chr2_4:19904383-19904402 | None:intergenic | 60.0% | |
| GAGTCCGCTCAGCAACAGAG+TGG | + | chr2_4:19905132-19905151 | None:intergenic | 60.0% | |
| ! | GCCTTGGTGCGAGGAAGAGT+TGG | + | chr2_4:19905181-19905200 | None:intergenic | 60.0% |
| CGTCATTCCTTCCTCGCCTC+TGG | + | chr2_4:19906610-19906629 | None:intergenic | 60.0% | |
| ACCCAAACTGTGGACACCGC+TGG | - | chr2_4:19906649-19906668 | Msa0319850:intron | 60.0% | |
| CTCCAGCGGTGTCCACAGTT+TGG | + | chr2_4:19906654-19906673 | None:intergenic | 60.0% | |
| ! | CAGCGAACAGCCTTGGTGCG+AGG | + | chr2_4:19905190-19905209 | None:intergenic | 65.0% |
| GCAACTGCCAGAGGCGAGGA+AGG | - | chr2_4:19906600-19906619 | Msa0319850:intron | 65.0% | |
| GCAGGCAACTGCCAGAGGCG+AGG | - | chr2_4:19906596-19906615 | Msa0319850:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 19904089 | 19907121 | 19904089 | ID=Msa0319850;Name=Msa0319850 |
| chr2_4 | mRNA | 19904089 | 19907121 | 19904089 | ID=Msa0319850-mRNA-1;Parent=Msa0319850;Name=Msa0319850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=115|1|1|1|1|1|4|441|114 |
| chr2_4 | exon | 19904089 | 19904610 | 19904089 | ID=Msa0319850-mRNA-1:exon:7362;Parent=Msa0319850-mRNA-1 |
| chr2_4 | exon | 19905964 | 19906122 | 19905964 | ID=Msa0319850-mRNA-1:exon:7361;Parent=Msa0319850-mRNA-1 |
| chr2_4 | exon | 19906800 | 19906875 | 19906800 | ID=Msa0319850-mRNA-1:exon:7360;Parent=Msa0319850-mRNA-1 |
| chr2_4 | exon | 19906978 | 19907121 | 19906978 | ID=Msa0319850-mRNA-1:exon:7359;Parent=Msa0319850-mRNA-1 |
| chr2_4 | five_prime_UTR | 19907007 | 19907121 | 19907007 | ID=Msa0319850-mRNA-1:five_prime_utr;Parent=Msa0319850-mRNA-1 |
| chr2_4 | CDS | 19906978 | 19907006 | 19906978 | ID=Msa0319850-mRNA-1:cds;Parent=Msa0319850-mRNA-1 |
| chr2_4 | CDS | 19906800 | 19906875 | 19906800 | ID=Msa0319850-mRNA-1:cds;Parent=Msa0319850-mRNA-1 |
| chr2_4 | CDS | 19905964 | 19906122 | 19905964 | ID=Msa0319850-mRNA-1:cds;Parent=Msa0319850-mRNA-1 |
| chr2_4 | CDS | 19904530 | 19904610 | 19904530 | ID=Msa0319850-mRNA-1:cds;Parent=Msa0319850-mRNA-1 |
| chr2_4 | three_prime_UTR | 19904089 | 19904529 | 19904089 | ID=Msa0319850-mRNA-1:three_prime_utr;Parent=Msa0319850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
