AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348770 MtrunA17_Chr3g0140041 93.976 498 11 2 1 498 1 479 0.0 951
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348770 AT4G32770.1 65.873 504 150 4 1 498 1 488 0.0 687

Find 160 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCCAATCACACAATTTC+TGG 0.153393 tig0010477:+6887 Msa1348770:CDS
GGGAGGTGTAGGAGAGTAAA+TGG 0.240767 tig0010477:-6542 Msa1348770:intergenic
CGTTCCCGAGAAAATGGTTT+TGG 0.250397 tig0010477:+8937 Msa1348770:CDS
ACTTTGGAATTGGCACAATA+TGG 0.276822 tig0010477:+6799 Msa1348770:CDS
AAGTAGCTACTTGGGGTTAT+TGG 0.292450 tig0010477:+10042 Msa1348770:CDS
GACCTAGGTTTACTGGTGTT+GGG 0.295673 tig0010477:+6821 Msa1348770:CDS
CCTGTTCTTAGCCGTGCTAT+TGG 0.308781 tig0010477:+10687 Msa1348770:CDS
GTGGAGCGTTCCCGAGAAAA+TGG 0.320779 tig0010477:+8931 Msa1348770:CDS
CAATATGGACCTAGGTTTAC+TGG 0.328735 tig0010477:+6814 Msa1348770:CDS
TCATGGTAAGTACAAACTTT+TGG 0.336719 tig0010477:+10824 Msa1348770:three_prime_UTR
GTGAAAATGGCAGATAATAT+TGG 0.340328 tig0010477:+10584 Msa1348770:intron
TTAATGTATAAGAATGTTCA+TGG 0.341375 tig0010477:+10930 Msa1348770:three_prime_UTR
GTGTTTAGGTATCACTTTGA+TGG 0.344307 tig0010477:+6661 Msa1348770:intron
TTCCAAAGTTGTCAATTCCT+TGG 0.350325 tig0010477:-6785 Msa1348770:intergenic
TTCCCCAGAAATTGTGTGAT+TGG 0.351635 tig0010477:-6891 Msa1348770:intergenic
GTCACTCCCCTTTGGAATCA+AGG 0.354231 tig0010477:+8016 Msa1348770:CDS
CAAGGTTTCATTTGCGATGA+TGG 0.355793 tig0010477:+8034 Msa1348770:CDS
GGAATTGACAACTTTGGAAT+TGG 0.357544 tig0010477:+6789 Msa1348770:CDS
TGGTGGATTGAGACAAATTC+CGG 0.358362 tig0010477:+9335 Msa1348770:CDS
TCCCCAGAAATTGTGTGATT+GGG 0.365123 tig0010477:-6890 Msa1348770:intergenic
TAGCCGTGCTATTGGATTAC+CGG 0.369394 tig0010477:+10695 Msa1348770:CDS
GGTGTTGGGGCACAAATTCT+TGG 0.371589 tig0010477:+6835 Msa1348770:CDS
CATCTTATTCAGAAAAGAAC+TGG 0.385152 tig0010477:+8907 Msa1348770:CDS
TCCAAAGTTGTCAATTCCTT+GGG 0.386517 tig0010477:-6784 Msa1348770:intergenic
TCTCTTGGTACAGAGTTTCA+TGG 0.392959 tig0010477:+10807 Msa1348770:three_prime_UTR
GGACCTAGGTTTACTGGTGT+TGG 0.399070 tig0010477:+6820 Msa1348770:CDS
GCTTGTAAAGATACATGCTT+TGG 0.401985 tig0010477:+10427 Msa1348770:CDS
TATAGTACACGTCCTGTATA+TGG 0.403430 tig0010477:+8184 Msa1348770:CDS
TGTAGGAGAGTAAATGGGTT+TGG 0.412743 tig0010477:-6536 Msa1348770:intergenic
TACACGTCCTGTATATGGTT+GGG 0.419259 tig0010477:+8189 Msa1348770:CDS
GAATACTAAAATTAAAATTG+TGG 0.423212 tig0010477:+10449 Msa1348770:CDS
TATATGGTTGGGGTGATGTT+GGG 0.431491 tig0010477:+8200 Msa1348770:CDS
GTATATGGTTGGGGTGATGT+TGG 0.436667 tig0010477:+8199 Msa1348770:CDS
ATTGTTAACGTGTGTTTAGT+TGG 0.440803 tig0010477:+10954 Msa1348770:three_prime_UTR
AATACTAAAATTAAAATTGT+GGG 0.443751 tig0010477:+10450 Msa1348770:CDS
TTAGGAGGAACCTCCTTGTT+CGG 0.446056 tig0010477:-7084 Msa1348770:intergenic
AGGTAGGAATGAATTGATGT+TGG 0.446287 tig0010477:+7026 Msa1348770:intron
TATCTTTACAAGCTTGAGAA+AGG 0.455604 tig0010477:-10417 Msa1348770:intergenic
TCCCAAGGAATTGACAACTT+TGG 0.457159 tig0010477:+6783 Msa1348770:CDS
TCCCCAATCACACAATTTCT+GGG 0.459146 tig0010477:+6888 Msa1348770:CDS
ATGGCCGGTGGCCTGTCAAC+AGG 0.465344 tig0010477:+8292 Msa1348770:CDS
GAAAGGCCAGCTTCTGATGT+TGG 0.465394 tig0010477:-10400 Msa1348770:intergenic
ATTCAATAGCTTGGTTTCCA+TGG 0.468249 tig0010477:-6365 Msa1348770:intergenic
GCGCAGATTGGAATTCACTA+TGG 0.470754 tig0010477:+9972 Msa1348770:intron
GGATTACCGGTAGATGTAGA+TGG 0.471198 tig0010477:+10708 Msa1348770:CDS
GAAGAAGAAACAGAGGAGGA+AGG 0.472031 tig0010477:-6409 Msa1348770:intergenic
AAAGAACGGTAGTGATGAAA+GGG 0.477792 tig0010477:-6460 Msa1348770:intergenic
ACATCACCCCAACCATATAC+AGG 0.478564 tig0010477:-8196 Msa1348770:intergenic
CCAATAGCACGGCTAAGAAC+AGG 0.479300 tig0010477:-10687 Msa1348770:intergenic
CATGGAATGGTGTTGTAAGC+TGG 0.479963 tig0010477:+10018 Msa1348770:CDS
TAAGCTGGGAAGTAGCTACT+TGG 0.490303 tig0010477:+10033 Msa1348770:CDS
GGGGCACAAATTCTTGGTGC+TGG 0.494415 tig0010477:+6841 Msa1348770:CDS
TTTCCTCTGTTTAAACCACC+TGG 0.496378 tig0010477:+10744 Msa1348770:CDS
AAGCTGGGAAGTAGCTACTT+GGG 0.500867 tig0010477:+10034 Msa1348770:CDS
AGATTGAGATTGTTGTTGTT+CGG 0.504947 tig0010477:-6512 Msa1348770:intergenic
GACATGGCAGCTCTAGAAGT+TGG 0.506366 tig0010477:+10618 Msa1348770:CDS
GGTGGATTGAGACAAATTCC+GGG 0.506870 tig0010477:+9336 Msa1348770:CDS
CACGCAAATTCTTCGAGGGT+TGG 0.507645 tig0010477:+6689 Msa1348770:CDS
GACATTTGAAAATGCTGCAT+TGG 0.507859 tig0010477:+9368 Msa1348770:CDS
GGAGGTGTAGGAGAGTAAAT+GGG 0.508025 tig0010477:-6541 Msa1348770:intergenic
TCCATGTAAAACTTCTCTCT+TGG 0.509736 tig0010477:+10792 Msa1348770:three_prime_UTR
GAGGGCCATGGTTTAACACT+TGG 0.509944 tig0010477:+10643 Msa1348770:CDS
TAACGTGTGTTTAGTTGGAG+GGG 0.510042 tig0010477:+10959 Msa1348770:three_prime_UTR
AATGAAACCTTGATTCCAAA+GGG 0.511006 tig0010477:-8023 Msa1348770:intergenic
GGAAAGTGAATAAGAGAAGG+AGG 0.512849 tig0010477:-6388 Msa1348770:intergenic
GGTAGGAATGAATTGATGTT+GGG 0.514349 tig0010477:+7027 Msa1348770:intron
TCAAATGTCTCAGTTAGTCC+CGG 0.515148 tig0010477:-9354 Msa1348770:intergenic
AGAAGGAGGATTCAATAGCT+TGG 0.516141 tig0010477:-6374 Msa1348770:intergenic
ACCTAGGTTTACTGGTGTTG+GGG 0.516777 tig0010477:+6822 Msa1348770:CDS
AAGATAGTTACCCGCTATGA+GGG 0.516871 tig0010477:-6582 Msa1348770:intergenic
AACTGCACGCAAATTCTTCG+AGG 0.519195 tig0010477:+6684 Msa1348770:CDS
AACAGTAAAGACTGCTCGCT+GGG 0.520354 tig0010477:+8159 Msa1348770:CDS
CACAGAAGTCAACTGCTGGC+TGG 0.521033 tig0010477:+8227 Msa1348770:CDS
GGGGTGCGAAGTTGACGATT+GGG 0.522940 tig0010477:-6562 Msa1348770:intergenic
AAAGATAGTTACCCGCTATG+AGG 0.527165 tig0010477:-6583 Msa1348770:intergenic
TTAACGTGTGTTTAGTTGGA+GGG 0.528753 tig0010477:+10958 Msa1348770:three_prime_UTR
GAACAAGGAGGTTCCTCCTA+AGG 0.529562 tig0010477:+7086 Msa1348770:CDS
AGGGGTGCGAAGTTGACGAT+TGG 0.530318 tig0010477:-6563 Msa1348770:intergenic
TACATAAAACCTACCTTAGG+AGG 0.531597 tig0010477:-7099 Msa1348770:intergenic
CAGAAAAGAACGTGTGATGT+TGG 0.533117 tig0010477:+6247 Msa1348770:five_prime_UTR
CGTGCTCCAACATCAGAAGC+TGG 0.533200 tig0010477:+10394 Msa1348770:CDS
GAAATTGCACTTACAGCCGC+TGG 0.534354 tig0010477:+9315 Msa1348770:CDS
TTTAATGATAAAGTGTTCGA+AGG 0.534535 tig0010477:+7986 Msa1348770:CDS
TGTGTGATTGGGGAGTATAT+TGG 0.535186 tig0010477:-6879 Msa1348770:intergenic
ACAGAGGAAACAGATTATAG+AGG 0.536656 tig0010477:-10731 Msa1348770:intergenic
AACTTCGCACCCCTCATAGC+GGG 0.537198 tig0010477:+6572 Msa1348770:CDS
AAACAGTAAAGACTGCTCGC+TGG 0.537456 tig0010477:+8158 Msa1348770:CDS
GAAGGAAAGTGAATAAGAGA+AGG 0.541467 tig0010477:-6391 Msa1348770:intergenic
CGATGATTAGTTTGAAAGAA+CGG 0.544514 tig0010477:-6474 Msa1348770:intergenic
ACACGTCCTGTATATGGTTG+GGG 0.544633 tig0010477:+8190 Msa1348770:CDS
TATGAATTTGTGCCATGGAA+TGG 0.547126 tig0010477:+10005 Msa1348770:CDS
GAAAGAACGGTAGTGATGAA+AGG 0.547693 tig0010477:-6461 Msa1348770:intergenic
CAAGAATCATCATTCATCCA+TGG 0.547722 tig0010477:+6348 Msa1348770:exon
GACAGCACATACCTGTTGAC+AGG 0.550591 tig0010477:-8303 Msa1348770:intergenic
CATTGGCAAATATGCATGGC+CGG 0.551128 tig0010477:+8277 Msa1348770:CDS
TAGAAGTTGGAGGAGGGCCA+TGG 0.552177 tig0010477:+10631 Msa1348770:CDS
GAATCTCAGGTTGGATAGAG+TGG 0.554904 tig0010477:+8853 Msa1348770:intron
AGTTGACGATTGGGAGGTGT+AGG 0.555006 tig0010477:-6553 Msa1348770:intergenic
GTTAACGTGTGTTTAGTTGG+AGG 0.556405 tig0010477:+10957 Msa1348770:three_prime_UTR
AGAAGAAGAAGAAACAGAGG+AGG 0.556467 tig0010477:-6413 Msa1348770:intergenic
ATATGACGGCAGCAAGGGAA+AGG 0.557692 tig0010477:+10480 Msa1348770:CDS
CCCCAGAAATTGTGTGATTG+GGG 0.559399 tig0010477:-6889 Msa1348770:intergenic
AGAAGATATGACGGCAGCAA+GGG 0.559547 tig0010477:+10475 Msa1348770:CDS
AAATGAAACCTTGATTCCAA+AGG 0.560360 tig0010477:-8024 Msa1348770:intergenic
GTCAATTCCTTGGGAAACGC+AGG 0.564340 tig0010477:-6775 Msa1348770:intergenic
CCATGGTTTAACACTTGGAA+GGG 0.565373 tig0010477:+10648 Msa1348770:CDS
GCCATGCATATTTGCCAATG+TGG 0.566045 tig0010477:-8274 Msa1348770:intergenic
CCCTTCCAAGTGTTAAACCA+TGG 0.566770 tig0010477:-10648 Msa1348770:intergenic
GCCATGGTTTAACACTTGGA+AGG 0.567755 tig0010477:+10647 Msa1348770:CDS
GTTTCATTTGCGATGATGGA+AGG 0.568224 tig0010477:+8038 Msa1348770:CDS
TAGAGGCCATCTACATCTAC+CGG 0.569072 tig0010477:-10714 Msa1348770:intergenic
GCAGCTCTAGAAGTTGGAGG+AGG 0.570437 tig0010477:+10624 Msa1348770:CDS
CAGCTTACAACACCATTCCA+TGG 0.573304 tig0010477:-10017 Msa1348770:intergenic
ACAACAACATACTACAAGCC+AGG 0.575692 tig0010477:-10762 Msa1348770:intergenic
GGATAGAGTGGGATGGCGAG+AGG 0.577129 tig0010477:+8865 Msa1348770:CDS
ATGGAATGGTGTTGTAAGCT+GGG 0.579542 tig0010477:+10019 Msa1348770:CDS
GAAGCAACAACAGAGGATCA+AGG 0.583207 tig0010477:+10361 Msa1348770:CDS
TGAGAATCCTGCGTTTCCCA+AGG 0.588380 tig0010477:+6768 Msa1348770:CDS
GTACACGTCCTGTATATGGT+TGG 0.589209 tig0010477:+8188 Msa1348770:CDS
AATTGGCACAATATGGACCT+AGG 0.592552 tig0010477:+6806 Msa1348770:CDS
ATGGCAGCTCTAGAAGTTGG+AGG 0.592674 tig0010477:+10621 Msa1348770:CDS
AAATTCGAAACCTCCGAACA+AGG 0.593736 tig0010477:+7071 Msa1348770:CDS
CATACCTGTTGACAGGCCAC+CGG 0.595777 tig0010477:-8296 Msa1348770:intergenic
TGCAGACAACGGAAATTATG+TGG 0.596580 tig0010477:+10073 Msa1348770:CDS
AATCTCAGGTTGGATAGAGT+GGG 0.597137 tig0010477:+8854 Msa1348770:intron
TTGTATCTCACATAGTGGAG+TGG 0.597174 tig0010477:+9246 Msa1348770:intron
ATCTTATTCAGAAAAGAACT+GGG 0.601044 tig0010477:+8908 Msa1348770:CDS
ATTGCACTTACAGCCGCTGG+TGG 0.602119 tig0010477:+9318 Msa1348770:CDS
GGAGGAACCTCCTTGTTCGG+AGG 0.606309 tig0010477:-7081 Msa1348770:intergenic
TCTACACAGAAGTCAACTGC+TGG 0.606515 tig0010477:+8223 Msa1348770:CDS
TTGTGGGAAAGAAGATATGA+CGG 0.606738 tig0010477:+10466 Msa1348770:CDS
GTGGAGTGGATGTCTCATGC+AGG 0.608259 tig0010477:+9260 Msa1348770:intron
CAGATTGGAATTCACTATGG+TGG 0.609821 tig0010477:+9975 Msa1348770:intron
TGGTTTATGTCTGCAGACAA+CGG 0.617480 tig0010477:+10062 Msa1348770:CDS
AAGAAGATATGACGGCAGCA+AGG 0.617497 tig0010477:+10474 Msa1348770:CDS
ACTGCACGCAAATTCTTCGA+GGG 0.619317 tig0010477:+6685 Msa1348770:CDS
TATTCAGAAAAGAACTGGGG+TGG 0.619500 tig0010477:+8912 Msa1348770:CDS
ACCACATTGGCAAATATGCA+TGG 0.624184 tig0010477:+8273 Msa1348770:CDS
AGCTGGGAAGTAGCTACTTG+GGG 0.631889 tig0010477:+10035 Msa1348770:CDS
CCCCAATCACACAATTTCTG+GGG 0.639513 tig0010477:+6889 Msa1348770:CDS
CAGCTCTAGAAGTTGGAGGA+GGG 0.650603 tig0010477:+10625 Msa1348770:CDS
GTGCGAAGTTGACGATTGGG+AGG 0.658422 tig0010477:-6559 Msa1348770:intergenic
AAAGGGGAAGAATGTGCGTG+TGG 0.658861 tig0010477:-6443 Msa1348770:intergenic
ATAGCACGGCTAAGAACAGG+TGG 0.660468 tig0010477:-10684 Msa1348770:intergenic
AAGCCAGGTGGTTTAAACAG+AGG 0.667539 tig0010477:-10747 Msa1348770:intergenic
TGGCAAATATGCATGGCCGG+TGG 0.673011 tig0010477:+8280 Msa1348770:CDS
TCAGGTTGGATAGAGTGGGA+TGG 0.674499 tig0010477:+8858 Msa1348770:intron
AAGAACGGTAGTGATGAAAG+GGG 0.674727 tig0010477:-6459 Msa1348770:intergenic
CTACCGGTAATCCAATAGCA+CGG 0.689701 tig0010477:-10698 Msa1348770:intergenic
ATTGGACGTGACAAGTGACA+TGG 0.693270 tig0010477:+10602 Msa1348770:CDS
AGATAGTTACCCGCTATGAG+GGG 0.698566 tig0010477:-6581 Msa1348770:intergenic
TGAATTAGAAGCAACAACAG+AGG 0.700490 tig0010477:+10354 Msa1348770:CDS
CAACTTCGCACCCCTCATAG+CGG 0.701316 tig0010477:+6571 Msa1348770:CDS
GCCCCAACACCAGTAAACCT+AGG 0.703555 tig0010477:-6823 Msa1348770:intergenic
AATTTGTCTCAATCCACCAG+CGG 0.711563 tig0010477:-9331 Msa1348770:intergenic
ATGAAACCTTGATTCCAAAG+GGG 0.725706 tig0010477:-8022 Msa1348770:intergenic
TTCGAAACCTCCGAACAAGG+AGG 0.737221 tig0010477:+7074 Msa1348770:CDS
ACAACATACTACAAGCCAGG+TGG 0.761546 tig0010477:-10759 Msa1348770:intergenic
TCTTATTCAGAAAAGAACTG+GGG 0.762832 tig0010477:+8909 Msa1348770:CDS
CATCAAAAGTTACTACACAG+CGG 0.801723 tig0010477:+6180 Msa1348770:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATGTAATTCTAATA+TGG + tig0010477:6952-6971 Msa1348770:intron 10.0%
!! TAAAGAATAATAATTATTTC+TGG - tig0010477:7922-7941 Msa1348770:intergenic 10.0%
!! TTGATACAAATTATAATTAT+AGG + tig0010477:8122-8141 Msa1348770:intron 10.0%
!!! ATATAATTTTTTTGAACAAT+TGG + tig0010477:8494-8513 Msa1348770:intron 10.0%
!! AATACTAAAATTAAAATTGT+GGG + tig0010477:10450-10469 Msa1348770:CDS 10.0%
!! TTTATTCAATTTATGTGTTT+AGG + tig0010477:6647-6666 Msa1348770:intron 15.0%
!!! TACAAGTTAATTTTTTTGAA+TGG + tig0010477:7001-7020 Msa1348770:intron 15.0%
!! TACAAATTATAATTATAGGT+CGG + tig0010477:8126-8145 Msa1348770:intron 15.0%
!!! TGTATTTTGATTGAAAATTA+TGG + tig0010477:9081-9100 Msa1348770:intron 15.0%
!!! AAATAAATGTTGATGATAAT+AGG + tig0010477:9472-9491 Msa1348770:intron 15.0%
!! AATATAATATACTGATAGAA+AGG - tig0010477:9897-9916 Msa1348770:intergenic 15.0%
!! AACATAAAACATAATGTAAT+TGG - tig0010477:10112-10131 Msa1348770:intergenic 15.0%
!!! TCAATTAATTATATTTTTGC+AGG + tig0010477:10330-10349 Msa1348770:intron 15.0%
!! GAATACTAAAATTAAAATTG+TGG + tig0010477:10449-10468 Msa1348770:CDS 15.0%
!!! ATATTTTCTATGTATAAACA+TGG - tig0010477:10874-10893 Msa1348770:intergenic 15.0%
!!! GTTAATTTTTTTGAATGGTT+AGG + tig0010477:7006-7025 Msa1348770:intron 20.0%
!!! CTTTACTTTATCTTTTGTAA+AGG - tig0010477:7537-7556 Msa1348770:intergenic 20.0%
!!! ACTAGTTTTACTTATTTCAT+TGG + tig0010477:7778-7797 Msa1348770:intron 20.0%
!! ACTTTATCATTAAATTCCTA+TGG - tig0010477:7980-7999 Msa1348770:intergenic 20.0%
!!! AATATTTTGTAGATATCAAG+TGG - tig0010477:8444-8463 Msa1348770:intergenic 20.0%
!!! TATGATAATGAACATTTACA+AGG + tig0010477:8572-8591 Msa1348770:intron 20.0%
!! TATTAACAATATTGAATCTC+AGG + tig0010477:8840-8859 Msa1348770:intron 20.0%
!!! TTTTCAATCAAAATACAAGA+AGG - tig0010477:9078-9097 Msa1348770:intergenic 20.0%
!!! TTCTATTGTTCTTTTTGTTT+TGG + tig0010477:9525-9544 Msa1348770:intron 20.0%
!!! TACATTATGTTTTATGTTGA+TGG + tig0010477:10114-10133 Msa1348770:intron 20.0%
!! TTTGTCTTTGATTAGATTAA+TGG + tig0010477:10541-10560 Msa1348770:intron 20.0%
!! TTAATGTATAAGAATGTTCA+TGG + tig0010477:10930-10949 Msa1348770:three_prime_UTR 20.0%
!!! ATTTTTTTGAATGGTTAGGT+AGG + tig0010477:7010-7029 Msa1348770:intron 25.0%
!! TGTCATTTAAACATACATGA+GGG + tig0010477:7319-7338 Msa1348770:intron 25.0%
! TTGACTATTAAGACTCTATT+TGG + tig0010477:7443-7462 Msa1348770:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG + tig0010477:7663-7682 Msa1348770:intron 25.0%
!!! TCTGATTAGTCTAAATTTGT+TGG - tig0010477:7848-7867 Msa1348770:intergenic 25.0%
! ATTTAGACTAATCAGACAAA+TGG + tig0010477:7852-7871 Msa1348770:intron 25.0%
!! TTTAATGATAAAGTGTTCGA+AGG + tig0010477:7986-8005 Msa1348770:CDS 25.0%
! TAGACTAAAACTGAAATGAT+AGG + tig0010477:8602-8621 Msa1348770:intron 25.0%
! AATGAATATGAGACTTTAAG+AGG - tig0010477:8687-8706 Msa1348770:intergenic 25.0%
! TAAAAGTTATTCACACTTGT+TGG + tig0010477:8785-8804 Msa1348770:intron 25.0%
!! AGTTCTTTTCTGAATAAGAT+GGG - tig0010477:8908-8927 Msa1348770:intergenic 25.0%
! ATCTTATTCAGAAAAGAACT+GGG + tig0010477:8908-8927 Msa1348770:CDS 25.0%
! TATTAATCTACAATACTTGC+TGG - tig0010477:9149-9168 Msa1348770:intergenic 25.0%
!!! TTTTTTTGTATCTCACATAG+TGG + tig0010477:9241-9260 Msa1348770:intron 25.0%
!!! AATGTTGATGATAATAGGAA+TGG + tig0010477:9477-9496 Msa1348770:intron 25.0%
! ATTTGACAAAATCTATAGTG+AGG + tig0010477:9583-9602 Msa1348770:intron 25.0%
! TGTTAAAATTTATTGTCGAG+TGG + tig0010477:9711-9730 Msa1348770:intron 25.0%
! GTTCTAATTTGAATGTCTAA+TGG + tig0010477:9763-9782 Msa1348770:intron 25.0%
! ATTTCATCTGTTTCAAATTG+TGG + tig0010477:9795-9814 Msa1348770:intron 25.0%
! ATGAATATACAACTCATACT+TGG + tig0010477:10189-10208 Msa1348770:intron 25.0%
! TGAATATACAACTCATACTT+GGG + tig0010477:10190-10209 Msa1348770:intron 25.0%
!! TTTTCTTAAAGTAAACATGC+TGG + tig0010477:10287-10306 Msa1348770:intron 25.0%
! TGATGAATGTTATGTGAAAA+TGG + tig0010477:10571-10590 Msa1348770:intron 25.0%
!! CGATGATTAGTTTGAAAGAA+CGG - tig0010477:6477-6496 Msa1348770:intergenic 30.0%
! AGATTGAGATTGTTGTTGTT+CGG - tig0010477:6515-6534 Msa1348770:intergenic 30.0%
GTATACATAAAACCTACCTT+AGG - tig0010477:7105-7124 Msa1348770:intergenic 30.0%
! TTTAAAATATGCATGACGAC+AGG - tig0010477:7195-7214 Msa1348770:intergenic 30.0%
! CTGTCATTTAAACATACATG+AGG + tig0010477:7318-7337 Msa1348770:intron 30.0%
ATTTAAACATACATGAGGGT+AGG + tig0010477:7323-7342 Msa1348770:intron 30.0%
! CACTTTTCCAATGAATAAGT+AGG + tig0010477:7352-7371 Msa1348770:intron 30.0%
! TTTTCCAATGAATAAGTAGG+TGG + tig0010477:7355-7374 Msa1348770:intron 30.0%
AATAAGCTGAAAGCAACTTA+TGG + tig0010477:7572-7591 Msa1348770:intron 30.0%
AAGTAGTTGCGAAATTGTTT+GGG - tig0010477:7627-7646 Msa1348770:intergenic 30.0%
TAAGTAGTTGCGAAATTGTT+TGG - tig0010477:7628-7647 Msa1348770:intergenic 30.0%
TTCTGTCACAATTACATTAC+TGG + tig0010477:7881-7900 Msa1348770:intron 30.0%
! TACATTACTGGTTATAAGAG+TGG + tig0010477:7893-7912 Msa1348770:intron 30.0%
GTTTGCAAATGCTTCTTATT+TGG + tig0010477:7947-7966 Msa1348770:intron 30.0%
AATGAAACCTTGATTCCAAA+GGG - tig0010477:8026-8045 Msa1348770:intergenic 30.0%
AAATGAAACCTTGATTCCAA+AGG - tig0010477:8027-8046 Msa1348770:intergenic 30.0%
CAGTTTATGTGAAGCTATTA+TGG + tig0010477:8378-8397 Msa1348770:intron 30.0%
! ATGTAATTTGCCAAAGTGAT+TGG + tig0010477:8411-8430 Msa1348770:intron 30.0%
ATGATGCTTGACAATTAGTT+TGG + tig0010477:8625-8644 Msa1348770:intron 30.0%
! TGATGCTTGACAATTAGTTT+GGG + tig0010477:8626-8645 Msa1348770:intron 30.0%
AACAATATTGAATCTCAGGT+TGG + tig0010477:8844-8863 Msa1348770:intron 30.0%
! GTTCTTTTCTGAATAAGATG+GGG - tig0010477:8907-8926 Msa1348770:intergenic 30.0%
! CAGTTCTTTTCTGAATAAGA+TGG - tig0010477:8909-8928 Msa1348770:intergenic 30.0%
CATCTTATTCAGAAAAGAAC+TGG + tig0010477:8907-8926 Msa1348770:CDS 30.0%
TCTTATTCAGAAAAGAACTG+GGG + tig0010477:8909-8928 Msa1348770:CDS 30.0%
! TTTACCCAAAACCATTTTCT+CGG - tig0010477:8945-8964 Msa1348770:intergenic 30.0%
ATTCAAGTAACCATAAAACG+AGG - tig0010477:9123-9142 Msa1348770:intergenic 30.0%
ATGATAATAGGAATGGCTAA+AGG + tig0010477:9484-9503 Msa1348770:intron 30.0%
GCTTAAAATCATGAATGATG+TGG + tig0010477:9683-9702 Msa1348770:intron 30.0%
GAAACAGATGAAATCACTAA+CGG - tig0010477:9789-9808 Msa1348770:intergenic 30.0%
TGTTTCAAATTGTGGTAACA+AGG + tig0010477:9803-9822 Msa1348770:intron 30.0%
!!! TCTTGTGTAGGATTAGTTTT+GGG + tig0010477:9832-9851 Msa1348770:intron 30.0%
!! AGTTTTATGAATTTGTGCCA+TGG + tig0010477:10000-10019 Msa1348770:CDS 30.0%
GAATATACAACTCATACTTG+GGG + tig0010477:10191-10210 Msa1348770:intron 30.0%
TATCTTTACAAGCTTGAGAA+AGG - tig0010477:10420-10439 Msa1348770:intergenic 30.0%
GTGAAAATGGCAGATAATAT+TGG + tig0010477:10584-10603 Msa1348770:intron 30.0%
! TCATGGTAAGTACAAACTTT+TGG + tig0010477:10824-10843 Msa1348770:three_prime_UTR 30.0%
!! GTAAGTACAAACTTTTGGAA+GGG + tig0010477:10829-10848 Msa1348770:three_prime_UTR 30.0%
ATTGTTAACGTGTGTTTAGT+TGG + tig0010477:10954-10973 Msa1348770:three_prime_UTR 30.0%
!!! TGTTCTTTTTCAGCTTCAGT+TGG - tig0010477:6158-6177 Msa0456040:intergenic 35.0%
CATCAAAAGTTACTACACAG+CGG + tig0010477:6180-6199 Msa1348770:five_prime_UTR 35.0%
CAAGAATCATCATTCATCCA+TGG + tig0010477:6348-6367 Msa1348770:exon 35.0%
ATTCAATAGCTTGGTTTCCA+TGG - tig0010477:6368-6387 Msa1348770:intergenic 35.0%
GAAGGAAAGTGAATAAGAGA+AGG - tig0010477:6394-6413 Msa1348770:intergenic 35.0%
AGAAGAAGAAGAAGAAACAG+AGG - tig0010477:6419-6438 Msa1348770:intergenic 35.0%
AAAGAACGGTAGTGATGAAA+GGG - tig0010477:6463-6482 Msa1348770:intergenic 35.0%
GTGTTTAGGTATCACTTTGA+TGG + tig0010477:6661-6680 Msa1348770:intron 35.0%
!! CAAAAGCTTTGTCTCTTTTC+AGG - tig0010477:6733-6752 Msa1348770:intergenic 35.0%
TCCAAAGTTGTCAATTCCTT+GGG - tig0010477:6787-6806 Msa1348770:intergenic 35.0%
TTCCAAAGTTGTCAATTCCT+TGG - tig0010477:6788-6807 Msa1348770:intergenic 35.0%
!! GGAATTGACAACTTTGGAAT+TGG + tig0010477:6789-6808 Msa1348770:CDS 35.0%
!! ACTTTGGAATTGGCACAATA+TGG + tig0010477:6799-6818 Msa1348770:CDS 35.0%
AGGTAGGAATGAATTGATGT+TGG + tig0010477:7026-7045 Msa1348770:intron 35.0%
GGTAGGAATGAATTGATGTT+GGG + tig0010477:7027-7046 Msa1348770:intron 35.0%
TACATAAAACCTACCTTAGG+AGG - tig0010477:7102-7121 Msa1348770:intergenic 35.0%
AATTGAGCTACTGAACTGAA+GGG - tig0010477:7269-7288 Msa1348770:intergenic 35.0%
TAATTGAGCTACTGAACTGA+AGG - tig0010477:7270-7289 Msa1348770:intergenic 35.0%
ACACTCACTACAAATTAGAG+AGG + tig0010477:7289-7308 Msa1348770:intron 35.0%
CACTCACTACAAATTAGAGA+GGG + tig0010477:7290-7309 Msa1348770:intron 35.0%
GAGCTTATGAAAACTGTGTA+TGG - tig0010477:7603-7622 Msa1348770:intergenic 35.0%
! CTTATTTGGTCACTTTCCAT+AGG + tig0010477:7961-7980 Msa1348770:intron 35.0%
ATGAAACCTTGATTCCAAAG+GGG - tig0010477:8025-8044 Msa1348770:intergenic 35.0%
TATAGTACACGTCCTGTATA+TGG + tig0010477:8184-8203 Msa1348770:CDS 35.0%
!!! TTCCTGTTTTTGAACCACAT+TGG + tig0010477:8260-8279 Msa1348770:CDS 35.0%
ACTTTGGCAAATTACATGAG+TGG - tig0010477:8408-8427 Msa1348770:intergenic 35.0%
ATTACATGCCAGTAGAATTG+TGG + tig0010477:8461-8480 Msa1348770:intron 35.0%
TAATTATTGCTAGAGCCATG+TGG + tig0010477:8524-8543 Msa1348770:intron 35.0%
! GACAATTAGTTTGGGAAGTA+TGG + tig0010477:8634-8653 Msa1348770:intron 35.0%
! TTACCCAAAACCATTTTCTC+GGG - tig0010477:8944-8963 Msa1348770:intergenic 35.0%
CATAGAGTTTATCTGCACAT+CGG + tig0010477:8995-9014 Msa1348770:intron 35.0%
!!! TGTTGCTTTTCCTCGTTTTA+TGG + tig0010477:9110-9129 Msa1348770:intron 35.0%
GACATTTGAAAATGCTGCAT+TGG + tig0010477:9368-9387 Msa1348770:CDS 35.0%
TAATAGGAATGGCTAAAGGA+CGG + tig0010477:9488-9507 Msa1348770:intron 35.0%
TATTGCATTACTGACACTTC+AGG + tig0010477:9644-9663 Msa1348770:intron 35.0%
!!! CTCTTGTGTAGGATTAGTTT+TGG + tig0010477:9831-9850 Msa1348770:intron 35.0%
TATGAATTTGTGCCATGGAA+TGG + tig0010477:10005-10024 Msa1348770:CDS 35.0%
AAGTAAACATGCTGGAATTC+TGG + tig0010477:10295-10314 Msa1348770:intron 35.0%
TGAATTAGAAGCAACAACAG+AGG + tig0010477:10354-10373 Msa1348770:CDS 35.0%
GCTTGTAAAGATACATGCTT+TGG + tig0010477:10427-10446 Msa1348770:CDS 35.0%
TTGTGGGAAAGAAGATATGA+CGG + tig0010477:10466-10485 Msa1348770:CDS 35.0%
ACAGAGGAAACAGATTATAG+AGG - tig0010477:10734-10753 Msa1348770:intergenic 35.0%
TCCATGTAAAACTTCTCTCT+TGG + tig0010477:10792-10811 Msa1348770:three_prime_UTR 35.0%
! ACCAAGAGAGAAGTTTTACA+TGG - tig0010477:10796-10815 Msa1348770:intergenic 35.0%
! GGTAAGTACAAACTTTTGGA+AGG + tig0010477:10828-10847 Msa1348770:three_prime_UTR 35.0%
CAGAAAAGAACGTGTGATGT+TGG + tig0010477:6247-6266 Msa1348770:five_prime_UTR 40.0%
AGAAGGAGGATTCAATAGCT+TGG - tig0010477:6377-6396 Msa1348770:intergenic 40.0%
GGAAAGTGAATAAGAGAAGG+AGG - tig0010477:6391-6410 Msa1348770:intergenic 40.0%
AGAAGAAGAAGAAACAGAGG+AGG - tig0010477:6416-6435 Msa1348770:intergenic 40.0%
AAGAACGGTAGTGATGAAAG+GGG - tig0010477:6462-6481 Msa1348770:intergenic 40.0%
GAAAGAACGGTAGTGATGAA+AGG - tig0010477:6464-6483 Msa1348770:intergenic 40.0%
! TGTAGGAGAGTAAATGGGTT+TGG - tig0010477:6539-6558 Msa1348770:intergenic 40.0%
AAGATAGTTACCCGCTATGA+GGG - tig0010477:6585-6604 Msa1348770:intergenic 40.0%
AAAGATAGTTACCCGCTATG+AGG - tig0010477:6586-6605 Msa1348770:intergenic 40.0%
!! GCTTTGTCTCTTTTCAGGAA+TGG - tig0010477:6728-6747 Msa1348770:intergenic 40.0%
TCCCAAGGAATTGACAACTT+TGG + tig0010477:6783-6802 Msa1348770:CDS 40.0%
AATTGGCACAATATGGACCT+AGG + tig0010477:6806-6825 Msa1348770:CDS 40.0%
CAATATGGACCTAGGTTTAC+TGG + tig0010477:6814-6833 Msa1348770:CDS 40.0%
! TGTGTGATTGGGGAGTATAT+TGG - tig0010477:6882-6901 Msa1348770:intergenic 40.0%
TCCCCAATCACACAATTTCT+GGG + tig0010477:6888-6907 Msa1348770:CDS 40.0%
TCCCCAGAAATTGTGTGATT+GGG - tig0010477:6893-6912 Msa1348770:intergenic 40.0%
TTCCCCAGAAATTGTGTGAT+TGG - tig0010477:6894-6913 Msa1348770:intergenic 40.0%
! GATGTTGGGTAACACTTTTG+CGG + tig0010477:7041-7060 Msa1348770:CDS 40.0%
AAATTCGAAACCTCCGAACA+AGG + tig0010477:7071-7090 Msa1348770:CDS 40.0%
CTCACCACCTACTTATTCAT+TGG - tig0010477:7362-7381 Msa1348770:intergenic 40.0%
AATAAGTAGGTGGTGAGTGT+TGG + tig0010477:7365-7384 Msa1348770:intron 40.0%
ATAAGTAGGTGGTGAGTGTT+GGG + tig0010477:7366-7385 Msa1348770:intron 40.0%
TGCGTCATTTAAGCATACCT+TGG + tig0010477:7397-7416 Msa1348770:intron 40.0%
GCGTCATTTAAGCATACCTT+GGG + tig0010477:7398-7417 Msa1348770:intron 40.0%
CGTCATTTAAGCATACCTTG+GGG + tig0010477:7399-7418 Msa1348770:intron 40.0%
GTCATTTAAGCATACCTTGG+GGG + tig0010477:7400-7419 Msa1348770:intron 40.0%
TAAGAAGAAAATGACCCCCA+AGG - tig0010477:7417-7436 Msa1348770:intergenic 40.0%
ACTTATTTGAGCTCATCTGC+TGG - tig0010477:7653-7672 Msa1348770:intergenic 40.0%
AGTCAATCCAAATAGGTCCT+AGG + tig0010477:7670-7689 Msa1348770:intron 40.0%
GTTAACACCTAGGACCTATT+TGG - tig0010477:7680-7699 Msa1348770:intergenic 40.0%
TAACAGGGAAGTTAACACCT+AGG - tig0010477:7690-7709 Msa1348770:intergenic 40.0%
TAGTCGTTGACACTCTTTCA+AGG + tig0010477:7801-7820 Msa1348770:intron 40.0%
AGTCGTTGACACTCTTTCAA+GGG + tig0010477:7802-7821 Msa1348770:intron 40.0%
CAAGGTTTCATTTGCGATGA+TGG + tig0010477:8034-8053 Msa1348770:CDS 40.0%
!! GTTTCATTTGCGATGATGGA+AGG + tig0010477:8038-8057 Msa1348770:CDS 40.0%
TACACGTCCTGTATATGGTT+GGG + tig0010477:8189-8208 Msa1348770:CDS 40.0%
TATATGGTTGGGGTGATGTT+GGG + tig0010477:8200-8219 Msa1348770:CDS 40.0%
TGCCAATGTGGTTCAAAAAC+AGG - tig0010477:8265-8284 Msa1348770:intergenic 40.0%
ACCACATTGGCAAATATGCA+TGG + tig0010477:8273-8292 Msa1348770:CDS 40.0%
TGCCAGTAGAATTGTGGTAT+TGG + tig0010477:8467-8486 Msa1348770:intron 40.0%
GTCCAATACCACAATTCTAC+TGG - tig0010477:8472-8491 Msa1348770:intergenic 40.0%
! TAGTTTGGGAAGTATGGTGT+TGG + tig0010477:8640-8659 Msa1348770:intron 40.0%
! TTTAAGAGGAGCACATTCCA+AGG - tig0010477:8673-8692 Msa1348770:intergenic 40.0%
GTCTCATATTCATTTCTCGC+CGG + tig0010477:8693-8712 Msa1348770:intron 40.0%
!! AATCTCAGGTTGGATAGAGT+GGG + tig0010477:8854-8873 Msa1348770:intron 40.0%
TATTCAGAAAAGAACTGGGG+TGG + tig0010477:8912-8931 Msa1348770:CDS 40.0%
! GTTCCCGAGAAAATGGTTTT+GGG + tig0010477:8938-8957 Msa1348770:CDS 40.0%
!! TTATCTGCACATCGGTTTCA+TGG + tig0010477:9003-9022 Msa1348770:intron 40.0%
AACGAGGAAAAGCAACATTC+TGG - tig0010477:9107-9126 Msa1348770:intergenic 40.0%
! TTGTATCTCACATAGTGGAG+TGG + tig0010477:9246-9265 Msa1348770:intron 40.0%
! GCTCAGTGTAATGTTTTCGA+AGG + tig0010477:9282-9301 Msa1348770:CDS 40.0%
!!! AATGTTTTCGAAGGTGCTAG+TGG + tig0010477:9291-9310 Msa1348770:CDS 40.0%
AATTTGTCTCAATCCACCAG+CGG - tig0010477:9334-9353 Msa1348770:intergenic 40.0%
!! TGGTGGATTGAGACAAATTC+CGG + tig0010477:9335-9354 Msa1348770:CDS 40.0%
TCAAATGTCTCAGTTAGTCC+CGG - tig0010477:9357-9376 Msa1348770:intergenic 40.0%
! GCTGCATTGGTAACTTCATA+TGG + tig0010477:9381-9400 Msa1348770:intron 40.0%
AATAGGAATGGCTAAAGGAC+GGG + tig0010477:9489-9508 Msa1348770:intron 40.0%
GTCTATTTGCCTTCTTCTGT+TGG + tig0010477:9854-9873 Msa1348770:intron 40.0%
ATGTAGTGACCAACAGAAGA+AGG - tig0010477:9866-9885 Msa1348770:intergenic 40.0%
TGTTGCAAATTAGCGCAGAT+TGG + tig0010477:9960-9979 Msa1348770:intron 40.0%
CAGATTGGAATTCACTATGG+TGG + tig0010477:9975-9994 Msa1348770:intron 40.0%
!! ATGGAATGGTGTTGTAAGCT+GGG + tig0010477:10019-10038 Msa1348770:CDS 40.0%
AAGTAGCTACTTGGGGTTAT+TGG + tig0010477:10042-10061 Msa1348770:CDS 40.0%
TGGTTTATGTCTGCAGACAA+CGG + tig0010477:10062-10081 Msa1348770:CDS 40.0%
TGCAGACAACGGAAATTATG+TGG + tig0010477:10073-10092 Msa1348770:CDS 40.0%
CAACTCATACTTGGGGTTAT+TGG + tig0010477:10198-10217 Msa1348770:intron 40.0%
CCATGGTTTAACACTTGGAA+GGG + tig0010477:10648-10667 Msa1348770:CDS 40.0%
TTTCCTCTGTTTAAACCACC+TGG + tig0010477:10744-10763 Msa1348770:CDS 40.0%
ACAACAACATACTACAAGCC+AGG - tig0010477:10765-10784 Msa1348770:intergenic 40.0%
TCTCTTGGTACAGAGTTTCA+TGG + tig0010477:10807-10826 Msa1348770:three_prime_UTR 40.0%
GTTAACGTGTGTTTAGTTGG+AGG + tig0010477:10957-10976 Msa1348770:three_prime_UTR 40.0%
GAAGAAGAAACAGAGGAGGA+AGG - tig0010477:6412-6431 Msa1348770:intergenic 45.0%
! GGAGGTGTAGGAGAGTAAAT+GGG - tig0010477:6544-6563 Msa1348770:intergenic 45.0%
AGATAGTTACCCGCTATGAG+GGG - tig0010477:6584-6603 Msa1348770:intergenic 45.0%
AACTGCACGCAAATTCTTCG+AGG + tig0010477:6684-6703 Msa1348770:CDS 45.0%
ACTGCACGCAAATTCTTCGA+GGG + tig0010477:6685-6704 Msa1348770:CDS 45.0%
GACCTAGGTTTACTGGTGTT+GGG + tig0010477:6821-6840 Msa1348770:CDS 45.0%
! ACCTAGGTTTACTGGTGTTG+GGG + tig0010477:6822-6841 Msa1348770:CDS 45.0%
CTCCCCAATCACACAATTTC+TGG + tig0010477:6887-6906 Msa1348770:CDS 45.0%
CCCCAGAAATTGTGTGATTG+GGG - tig0010477:6892-6911 Msa1348770:intergenic 45.0%
CCCCAATCACACAATTTCTG+GGG + tig0010477:6889-6908 Msa1348770:CDS 45.0%
TTAGGAGGAACCTCCTTGTT+CGG - tig0010477:7087-7106 Msa1348770:intergenic 45.0%
GCAAAGATGCAGCAGTAACA+GGG - tig0010477:7705-7724 Msa1348770:intergenic 45.0%
AGCAAAGATGCAGCAGTAAC+AGG - tig0010477:7706-7725 Msa1348770:intergenic 45.0%
!!! GTTTTCAAGTCACTCCCCTT+TGG + tig0010477:8008-8027 Msa1348770:CDS 45.0%
AAACAGTAAAGACTGCTCGC+TGG + tig0010477:8158-8177 Msa1348770:CDS 45.0%
AACAGTAAAGACTGCTCGCT+GGG + tig0010477:8159-8178 Msa1348770:CDS 45.0%
GTACACGTCCTGTATATGGT+TGG + tig0010477:8188-8207 Msa1348770:CDS 45.0%
ACACGTCCTGTATATGGTTG+GGG + tig0010477:8190-8209 Msa1348770:CDS 45.0%
ACATCACCCCAACCATATAC+AGG - tig0010477:8199-8218 Msa1348770:intergenic 45.0%
GTATATGGTTGGGGTGATGT+TGG + tig0010477:8199-8218 Msa1348770:CDS 45.0%
TCTACACAGAAGTCAACTGC+TGG + tig0010477:8223-8242 Msa1348770:CDS 45.0%
GCCATGCATATTTGCCAATG+TGG - tig0010477:8277-8296 Msa1348770:intergenic 45.0%
CATTGGCAAATATGCATGGC+CGG + tig0010477:8277-8296 Msa1348770:CDS 45.0%
TGGCTAGATGCCAATCACTT+TGG - tig0010477:8424-8443 Msa1348770:intergenic 45.0%
! TTTCTCGCCGGTGTCAATTT+CGG + tig0010477:8705-8724 Msa1348770:intron 45.0%
!! TCAATTTCGGTGGGCTAGTT+TGG + tig0010477:8718-8737 Msa1348770:intron 45.0%
!! GAATCTCAGGTTGGATAGAG+TGG + tig0010477:8853-8872 Msa1348770:intron 45.0%
! CGTTCCCGAGAAAATGGTTT+TGG + tig0010477:8937-8956 Msa1348770:CDS 45.0%
TGCAACACTCATCGAAACAC+TGG - tig0010477:9210-9229 Msa1348770:intergenic 45.0%
!! GGTGGATTGAGACAAATTCC+GGG + tig0010477:9336-9355 Msa1348770:CDS 45.0%
ATAGGAATGGCTAAAGGACG+GGG + tig0010477:9490-9509 Msa1348770:intron 45.0%
TATTGTCGAGTGGCTCAAGT+AGG + tig0010477:9721-9740 Msa1348770:intron 45.0%
!! ACAAGGTGTTGCTCTTGTGT+AGG + tig0010477:9820-9839 Msa1348770:intron 45.0%
GCGCAGATTGGAATTCACTA+TGG + tig0010477:9972-9991 Msa1348770:intron 45.0%
CAGCTTACAACACCATTCCA+TGG - tig0010477:10020-10039 Msa1348770:intergenic 45.0%
!! CATGGAATGGTGTTGTAAGC+TGG + tig0010477:10018-10037 Msa1348770:CDS 45.0%
TAAGCTGGGAAGTAGCTACT+TGG + tig0010477:10033-10052 Msa1348770:CDS 45.0%
AAGCTGGGAAGTAGCTACTT+GGG + tig0010477:10034-10053 Msa1348770:CDS 45.0%
! CTGGAATTCTGGCTAATGAC+AGG + tig0010477:10306-10325 Msa1348770:intron 45.0%
GAAGCAACAACAGAGGATCA+AGG + tig0010477:10361-10380 Msa1348770:CDS 45.0%
AAGAAGATATGACGGCAGCA+AGG + tig0010477:10474-10493 Msa1348770:CDS 45.0%
AGAAGATATGACGGCAGCAA+GGG + tig0010477:10475-10494 Msa1348770:CDS 45.0%
ATTGGACGTGACAAGTGACA+TGG + tig0010477:10602-10621 Msa1348770:CDS 45.0%
GCCATGGTTTAACACTTGGA+AGG + tig0010477:10647-10666 Msa1348770:CDS 45.0%
CCCTTCCAAGTGTTAAACCA+TGG - tig0010477:10651-10670 Msa1348770:intergenic 45.0%
! TAGCCGTGCTATTGGATTAC+CGG + tig0010477:10695-10714 Msa1348770:CDS 45.0%
CTACCGGTAATCCAATAGCA+CGG - tig0010477:10701-10720 Msa1348770:intergenic 45.0%
GGATTACCGGTAGATGTAGA+TGG + tig0010477:10708-10727 Msa1348770:CDS 45.0%
TAGAGGCCATCTACATCTAC+CGG - tig0010477:10717-10736 Msa1348770:intergenic 45.0%
AAGCCAGGTGGTTTAAACAG+AGG - tig0010477:10750-10769 Msa1348770:intergenic 45.0%
ACAACATACTACAAGCCAGG+TGG - tig0010477:10762-10781 Msa1348770:intergenic 45.0%
AAAGGGGAAGAATGTGCGTG+TGG - tig0010477:6446-6465 Msa1348770:intergenic 50.0%
! GGGAGGTGTAGGAGAGTAAA+TGG - tig0010477:6545-6564 Msa1348770:intergenic 50.0%
! AGTTGACGATTGGGAGGTGT+AGG - tig0010477:6556-6575 Msa1348770:intergenic 50.0%
CACGCAAATTCTTCGAGGGT+TGG + tig0010477:6689-6708 Msa1348770:CDS 50.0%
TGAGAATCCTGCGTTTCCCA+AGG + tig0010477:6768-6787 Msa1348770:CDS 50.0%
GTCAATTCCTTGGGAAACGC+AGG - tig0010477:6778-6797 Msa1348770:intergenic 50.0%
GGACCTAGGTTTACTGGTGT+TGG + tig0010477:6820-6839 Msa1348770:CDS 50.0%
! GGTGTTGGGGCACAAATTCT+TGG + tig0010477:6835-6854 Msa1348770:CDS 50.0%
TTCGAAACCTCCGAACAAGG+AGG + tig0010477:7074-7093 Msa1348770:CDS 50.0%
GAACAAGGAGGTTCCTCCTA+AGG + tig0010477:7086-7105 Msa1348770:CDS 50.0%
AAGGAGGTTCCTCCTAAGGT+AGG + tig0010477:7090-7109 Msa1348770:intron 50.0%
!! GTCACTCCCCTTTGGAATCA+AGG + tig0010477:8016-8035 Msa1348770:CDS 50.0%
GACAGCACATACCTGTTGAC+AGG - tig0010477:8306-8325 Msa1348770:intergenic 50.0%
CCTATTCCTGACTCACCACA+TGG - tig0010477:8542-8561 Msa1348770:intergenic 50.0%
CCATGTGGTGAGTCAGGAAT+AGG + tig0010477:8539-8558 Msa1348770:intron 50.0%
!! TGGGAAGTATGGTGTTGGCT+TGG + tig0010477:8645-8664 Msa1348770:intron 50.0%
!! GGGAAGTATGGTGTTGGCTT+GGG + tig0010477:8646-8665 Msa1348770:intron 50.0%
!! GGAAGTATGGTGTTGGCTTG+GGG + tig0010477:8647-8666 Msa1348770:intron 50.0%
TAGCCCACCGAAATTGACAC+CGG - tig0010477:8715-8734 Msa1348770:intergenic 50.0%
!! TCAGGTTGGATAGAGTGGGA+TGG + tig0010477:8858-8877 Msa1348770:intron 50.0%
GAAATTGCACTTACAGCCGC+TGG + tig0010477:9315-9334 Msa1348770:CDS 50.0%
AGCTGGGAAGTAGCTACTTG+GGG + tig0010477:10035-10054 Msa1348770:CDS 50.0%
GAAAGGCCAGCTTCTGATGT+TGG - tig0010477:10403-10422 Msa1348770:intergenic 50.0%
ATATGACGGCAGCAAGGGAA+AGG + tig0010477:10480-10499 Msa1348770:CDS 50.0%
!! GACATGGCAGCTCTAGAAGT+TGG + tig0010477:10618-10637 Msa1348770:CDS 50.0%
!! ATGGCAGCTCTAGAAGTTGG+AGG + tig0010477:10621-10640 Msa1348770:CDS 50.0%
!! CAGCTCTAGAAGTTGGAGGA+GGG + tig0010477:10625-10644 Msa1348770:CDS 50.0%
GAGGGCCATGGTTTAACACT+TGG + tig0010477:10643-10662 Msa1348770:CDS 50.0%
ATAGCACGGCTAAGAACAGG+TGG - tig0010477:10687-10706 Msa1348770:intergenic 50.0%
CCAATAGCACGGCTAAGAAC+AGG - tig0010477:10690-10709 Msa1348770:intergenic 50.0%
CCTGTTCTTAGCCGTGCTAT+TGG + tig0010477:10687-10706 Msa1348770:CDS 50.0%
GTGCGAAGTTGACGATTGGG+AGG - tig0010477:6562-6581 Msa1348770:intergenic 55.0%
GGGGTGCGAAGTTGACGATT+GGG - tig0010477:6565-6584 Msa1348770:intergenic 55.0%
! AGGGGTGCGAAGTTGACGAT+TGG - tig0010477:6566-6585 Msa1348770:intergenic 55.0%
CAACTTCGCACCCCTCATAG+CGG + tig0010477:6571-6590 Msa1348770:CDS 55.0%
AACTTCGCACCCCTCATAGC+GGG + tig0010477:6572-6591 Msa1348770:CDS 55.0%
GCCCCAACACCAGTAAACCT+AGG - tig0010477:6826-6845 Msa1348770:intergenic 55.0%
! GGGGCACAAATTCTTGGTGC+TGG + tig0010477:6841-6860 Msa1348770:CDS 55.0%
CACAGAAGTCAACTGCTGGC+TGG + tig0010477:8227-8246 Msa1348770:CDS 55.0%
TGGCAAATATGCATGGCCGG+TGG + tig0010477:8280-8299 Msa1348770:CDS 55.0%
CATACCTGTTGACAGGCCAC+CGG - tig0010477:8299-8318 Msa1348770:intergenic 55.0%
CTAGAGCCATGTGGTGAGTC+AGG + tig0010477:8533-8552 Msa1348770:intron 55.0%
! TCGCCGGTGTCAATTTCGGT+GGG + tig0010477:8709-8728 Msa1348770:intron 55.0%
! GTGGAGCGTTCCCGAGAAAA+TGG + tig0010477:8931-8950 Msa1348770:CDS 55.0%
GTGGAGTGGATGTCTCATGC+AGG + tig0010477:9260-9279 Msa1348770:intron 55.0%
ATTGCACTTACAGCCGCTGG+TGG + tig0010477:9318-9337 Msa1348770:CDS 55.0%
CGTGCTCCAACATCAGAAGC+TGG + tig0010477:10394-10413 Msa1348770:CDS 55.0%
!! GCAGCTCTAGAAGTTGGAGG+AGG + tig0010477:10624-10643 Msa1348770:CDS 55.0%
TAGAAGTTGGAGGAGGGCCA+TGG + tig0010477:10631-10650 Msa1348770:CDS 55.0%
GGAGGAACCTCCTTGTTCGG+AGG - tig0010477:7084-7103 Msa1348770:intergenic 60.0%
!! ATGGTGTTGGCTTGGGGCCT+TGG + tig0010477:8653-8672 Msa1348770:intron 60.0%
! CTCGCCGGTGTCAATTTCGG+TGG + tig0010477:8708-8727 Msa1348770:intron 60.0%
GGATAGAGTGGGATGGCGAG+AGG + tig0010477:8865-8884 Msa1348770:CDS 60.0%
ATGGCCGGTGGCCTGTCAAC+AGG + tig0010477:8292-8311 Msa1348770:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0010477 gene 6059 10980 6059 ID=Msa1348770;Name=Msa1348770
tig0010477 mRNA 6059 10980 6059 ID=Msa1348770-mRNA-1;Parent=Msa1348770;Name=Msa1348770-mRNA-1;_AED=0.23;_eAED=0.23;_QI=308|0.88|0.8|1|0.88|1|10|207|498
tig0010477 exon 6059 6593 6059 ID=Msa1348770-mRNA-1:exon:6582;Parent=Msa1348770-mRNA-1
tig0010477 exon 6669 6913 6669 ID=Msa1348770-mRNA-1:exon:6583;Parent=Msa1348770-mRNA-1
tig0010477 exon 7028 7107 7028 ID=Msa1348770-mRNA-1:exon:6584;Parent=Msa1348770-mRNA-1
tig0010477 exon 7983 8059 7983 ID=Msa1348770-mRNA-1:exon:6585;Parent=Msa1348770-mRNA-1
tig0010477 exon 8144 8313 8144 ID=Msa1348770-mRNA-1:exon:6586;Parent=Msa1348770-mRNA-1
tig0010477 exon 8862 8986 8862 ID=Msa1348770-mRNA-1:exon:6587;Parent=Msa1348770-mRNA-1
tig0010477 exon 9261 9389 9261 ID=Msa1348770-mRNA-1:exon:6588;Parent=Msa1348770-mRNA-1
tig0010477 exon 9978 10094 9978 ID=Msa1348770-mRNA-1:exon:6589;Parent=Msa1348770-mRNA-1
tig0010477 exon 10352 10501 10352 ID=Msa1348770-mRNA-1:exon:6590;Parent=Msa1348770-mRNA-1
tig0010477 exon 10597 10980 10597 ID=Msa1348770-mRNA-1:exon:6591;Parent=Msa1348770-mRNA-1
tig0010477 five_prime_UTR 6059 6366 6059 ID=Msa1348770-mRNA-1:five_prime_utr;Parent=Msa1348770-mRNA-1
tig0010477 CDS 6367 6593 6367 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 6669 6913 6669 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 7028 7107 7028 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 7983 8059 7983 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 8144 8313 8144 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 8862 8986 8862 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 9261 9389 9261 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 9978 10094 9978 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 10352 10501 10352 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 CDS 10597 10773 10597 ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477 three_prime_UTR 10774 10980 10774 ID=Msa1348770-mRNA-1:three_prime_utr;Parent=Msa1348770-mRNA-1
Gene Sequence

>Msa1348770

ATGGAAACCAAGCTATTGAATCCTCCTTCTCTTATTCACTTTCCTTCCTCCTCTGTTTCTTCTTCTTCTTCTTTATCCACACGCACATTCTTCCCCTTTCATCACTACCGTTCTTTCAAACTAATCATCGCTCACAATTCACATACCGAACAACAACAATCTCAATCTTCCAAACCCATTTACTCTCCTACACCTCCCAATCGTCAACTTCGCACCCCTCATAGCGGGTATCACTTTGATGGAACTGCACGCAAATTCTTCGAGGGTTGGTACTTCAAAGTTTCCATTCCTGAAAAGAGACAAAGCTTTTGCTTTATGTATTCTGTTGAGAATCCTGCGTTTCCCAAGGAATTGACAACTTTGGAATTGGCACAATATGGACCTAGGTTTACTGGTGTTGGGGCACAAATTCTTGGTGCTGGTGATAAATACATTTGCCAATATACTCCCCAATCACACAATTTCTGGGGAAGTAGGAATGAATTGATGTTGGGTAACACTTTTGCGGCTAAGCAAAATTCGAAACCTCCGAACAAGGAGGTTCCTCCTAAGGAATTTAATGATAAAGTGTTCGAAGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCGGATTATGTAGAAACAGTAAAGACTGCTCGCTGGGAGTATAGTACACGTCCTGTATATGGTTGGGGTGATGTTGGGTCTACACAGAAGTCAACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAACCACATTGGCAAATATGCATGGCCGGTGGCCTGTCAACAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGTGGAGCGTTCCCGAGAAAATGGTTTTGGGTAAAAAAACTCTCTTTCTTCACTGAATGGAGTGGATGTCTCATGCAGGCTCAGTGTAATGTTTTCGAAGGTGCTAGTGGAGAAATTGCACTTACAGCCGCTGGTGGATTGAGACAAATTCCGGGACTAACTGAGACATTTGAAAATGCTGCATTGATTGGAATTCACTATGGTGGAAAGTTTTATGAATTTGTGCCATGGAATGGTGTTGTAAGCTGGGAAGTAGCTACTTGGGGTTATTGGTTTATGTCTGCAGACAACGGAAATTATGTGGTTGAATTAGAAGCAACAACAGAGGATCAAGGTACTACATTGCGTGCTCCAACATCAGAAGCTGGCCTTTCTCAAGCTTGTAAAGATACATGCTTTGGAATACTAAAATTAAAATTGTGGGAAAGAAGATATGACGGCAGCAAGGGAAAGATAATATTGGACGTGACAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGGCCATGGTTTAACACTTGGAAGGGAAAAACATCAACTCCACCTGTTCTTAGCCGTGCTATTGGATTACCGGTAGATGTAGATGGCCTCTATAATCTGTTTCCTCTGTTTAAACCACCTGGCTTGTAG

Protein sequence

>Msa1348770

METKLLNPPSLIHFPSSSVSSSSSLSTRTFFPFHHYRSFKLIIAHNSHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYFKVSIPEKRQSFCFMYSVENPAFPKELTTLELAQYGPRFTGVGAQILGAGDKYICQYTPQSHNFWGSRNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVFEGFQVTPLWNQGFICDDGRSDYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWVKKLSFFTEWSGCLMQAQCNVFEGASGEIALTAAGGLRQIPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDQGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTSTPPVLSRAIGLPVDVDGLYNLFPLFKPPGL*