AlfalfaGEDB | Msa1348770

M. sativa cultivar zhongmu-4 / Msa1348770

KEGG: K09834
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009706 GO:0009915 GO:0009941 GO:0009975 GO:0009976 GO:0009987 GO:0010189 GO:0010232 GO:0010233 GO:0010287 GO:0015766 GO:0015770 GO:0015772 GO:0015994 GO:0016020 GO:0016108 GO:0016116 GO:0016122 GO:0018130 GO:0019752 GO:0019866 GO:0031090 GO:0031347 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032787 GO:0033013 GO:0042170 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051186 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:0080134 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617
PFAM: PF14249.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1348770	XP_013462012.1	93.976	498	11	2	1	498	1	479	0.0	951

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1348770	sp\|Q94FY7\|TOCC_ARATH	65.873	504	150	4	1	498	1	488	0.0	687

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1348770	A0A072V2G5	93.976	498	11	2	1	498	1	479	0.0	951

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1348770	0.853418	2.421319e-61	-8.615850e-47
Msa0000220	Msa1348770	0.863237	2.873772e-64	-8.615850e-47
Msa0001420	Msa1348770	0.818474	1.923186e-52	-8.615850e-47
Msa0001460	Msa1348770	0.819725	9.987535e-53	-8.615850e-47
Msa0001510	Msa1348770	0.834174	3.491784e-56	-8.615850e-47
Msa0001540	Msa1348770	0.873345	1.579887e-67	-8.615850e-47
Msa0002060	Msa1348770	0.832870	7.384261e-56	-8.615850e-47
Msa0002690	Msa1348770	0.818502	1.895573e-52	-8.615850e-47
Msa0002700	Msa1348770	0.813410	2.595845e-51	-8.615850e-47
Msa0003340	Msa1348770	0.806482	8.052240e-50	-8.615850e-47

Showing 1 to 10 of 2,236 entries

Previous1 2 3 4 5…224Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1348770	MtrunA17_Chr3g0140041	93.976	498	11	2	1	498	1	479	0.0	951

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1348770	AT4G32770.1	65.873	504	150	4	1	498	1	488	0.0	687

Showing 1 to 1 of 1 entries

Previous1Next

Find 160 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTAAAGACTGCTCGC+TGG	0.537456	tig0010477:+8158	Msa1348770:CDS
AAAGAACGGTAGTGATGAAA+GGG	0.477792	tig0010477:-6460	Msa1348770:intergenic
AAAGATAGTTACCCGCTATG+AGG	0.527165	tig0010477:-6583	Msa1348770:intergenic
AAAGGGGAAGAATGTGCGTG+TGG	0.658861	tig0010477:-6443	Msa1348770:intergenic
AAATGAAACCTTGATTCCAA+AGG	0.560360	tig0010477:-8024	Msa1348770:intergenic
AAATTCGAAACCTCCGAACA+AGG	0.593736	tig0010477:+7071	Msa1348770:CDS
AACAGTAAAGACTGCTCGCT+GGG	0.520354	tig0010477:+8159	Msa1348770:CDS
AACTGCACGCAAATTCTTCG+AGG	0.519195	tig0010477:+6684	Msa1348770:CDS
AACTTCGCACCCCTCATAGC+GGG	0.537198	tig0010477:+6572	Msa1348770:CDS
AAGAACGGTAGTGATGAAAG+GGG	0.674727	tig0010477:-6459	Msa1348770:intergenic

Showing 1 to 10 of 160 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTATACATAAAACCTACCTT+AGG	-	tig0010477:7105-7124	Msa1348770:intergenic	30.0%
ATTTAAACATACATGAGGGT+AGG	+	tig0010477:7323-7342	Msa1348770:intron	30.0%
AATAAGCTGAAAGCAACTTA+TGG	+	tig0010477:7572-7591	Msa1348770:intron	30.0%
AAGTAGTTGCGAAATTGTTT+GGG	-	tig0010477:7627-7646	Msa1348770:intergenic	30.0%
TAAGTAGTTGCGAAATTGTT+TGG	-	tig0010477:7628-7647	Msa1348770:intergenic	30.0%
TTCTGTCACAATTACATTAC+TGG	+	tig0010477:7881-7900	Msa1348770:intron	30.0%
GTTTGCAAATGCTTCTTATT+TGG	+	tig0010477:7947-7966	Msa1348770:intron	30.0%
AATGAAACCTTGATTCCAAA+GGG	-	tig0010477:8026-8045	Msa1348770:intergenic	30.0%
AAATGAAACCTTGATTCCAA+AGG	-	tig0010477:8027-8046	Msa1348770:intergenic	30.0%
CAGTTTATGTGAAGCTATTA+TGG	+	tig0010477:8378-8397	Msa1348770:intron	30.0%

Showing 1 to 10 of 310 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
tig0010477	gene	6059	10980	6059	ID=Msa1348770;Name=Msa1348770
tig0010477	mRNA	6059	10980	6059	ID=Msa1348770-mRNA-1;Parent=Msa1348770;Name=Msa1348770-mRNA-1;_AED=0.23;_eAED=0.23;_QI=308\|0.88\|0.8\|1\|0.88\|1\|10\|207\|498
tig0010477	exon	6059	6593	6059	ID=Msa1348770-mRNA-1:exon:6582;Parent=Msa1348770-mRNA-1
tig0010477	exon	6669	6913	6669	ID=Msa1348770-mRNA-1:exon:6583;Parent=Msa1348770-mRNA-1
tig0010477	exon	7028	7107	7028	ID=Msa1348770-mRNA-1:exon:6584;Parent=Msa1348770-mRNA-1
tig0010477	exon	7983	8059	7983	ID=Msa1348770-mRNA-1:exon:6585;Parent=Msa1348770-mRNA-1
tig0010477	exon	8144	8313	8144	ID=Msa1348770-mRNA-1:exon:6586;Parent=Msa1348770-mRNA-1
tig0010477	exon	8862	8986	8862	ID=Msa1348770-mRNA-1:exon:6587;Parent=Msa1348770-mRNA-1
tig0010477	exon	9261	9389	9261	ID=Msa1348770-mRNA-1:exon:6588;Parent=Msa1348770-mRNA-1
tig0010477	exon	9978	10094	9978	ID=Msa1348770-mRNA-1:exon:6589;Parent=Msa1348770-mRNA-1
tig0010477	exon	10352	10501	10352	ID=Msa1348770-mRNA-1:exon:6590;Parent=Msa1348770-mRNA-1
tig0010477	exon	10597	10980	10597	ID=Msa1348770-mRNA-1:exon:6591;Parent=Msa1348770-mRNA-1
tig0010477	five_prime_UTR	6059	6366	6059	ID=Msa1348770-mRNA-1:five_prime_utr;Parent=Msa1348770-mRNA-1
tig0010477	CDS	6367	6593	6367	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	6669	6913	6669	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	7028	7107	7028	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	7983	8059	7983	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	8144	8313	8144	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	8862	8986	8862	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	9261	9389	9261	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	9978	10094	9978	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	10352	10501	10352	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	CDS	10597	10773	10597	ID=Msa1348770-mRNA-1:cds;Parent=Msa1348770-mRNA-1
tig0010477	three_prime_UTR	10774	10980	10774	ID=Msa1348770-mRNA-1:three_prime_utr;Parent=Msa1348770-mRNA-1

Gene Sequence

>Msa1348770

ATGGAAACCAAGCTATTGAATCCTCCTTCTCTTATTCACTTTCCTTCCTCCTCTGTTTCTTCTTCTTCTTCTTTATCCACACGCACATTCTTCCCCTTTCATCACTACCGTTCTTTCAAACTAATCATCGCTCACAATTCACATACCGAACAACAACAATCTCAATCTTCCAAACCCATTTACTCTCCTACACCTCCCAATCGTCAACTTCGCACCCCTCATAGCGGGTATCACTTTGATGGAACTGCACGCAAATTCTTCGAGGGTTGGTACTTCAAAGTTTCCATTCCTGAAAAGAGACAAAGCTTTTGCTTTATGTATTCTGTTGAGAATCCTGCGTTTCCCAAGGAATTGACAACTTTGGAATTGGCACAATATGGACCTAGGTTTACTGGTGTTGGGGCACAAATTCTTGGTGCTGGTGATAAATACATTTGCCAATATACTCCCCAATCACACAATTTCTGGGGAAGTAGGAATGAATTGATGTTGGGTAACACTTTTGCGGCTAAGCAAAATTCGAAACCTCCGAACAAGGAGGTTCCTCCTAAGGAATTTAATGATAAAGTGTTCGAAGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCGGATTATGTAGAAACAGTAAAGACTGCTCGCTGGGAGTATAGTACACGTCCTGTATATGGTTGGGGTGATGTTGGGTCTACACAGAAGTCAACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAACCACATTGGCAAATATGCATGGCCGGTGGCCTGTCAACAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGTGGAGCGTTCCCGAGAAAATGGTTTTGGGTAAAAAAACTCTCTTTCTTCACTGAATGGAGTGGATGTCTCATGCAGGCTCAGTGTAATGTTTTCGAAGGTGCTAGTGGAGAAATTGCACTTACAGCCGCTGGTGGATTGAGACAAATTCCGGGACTAACTGAGACATTTGAAAATGCTGCATTGATTGGAATTCACTATGGTGGAAAGTTTTATGAATTTGTGCCATGGAATGGTGTTGTAAGCTGGGAAGTAGCTACTTGGGGTTATTGGTTTATGTCTGCAGACAACGGAAATTATGTGGTTGAATTAGAAGCAACAACAGAGGATCAAGGTACTACATTGCGTGCTCCAACATCAGAAGCTGGCCTTTCTCAAGCTTGTAAAGATACATGCTTTGGAATACTAAAATTAAAATTGTGGGAAAGAAGATATGACGGCAGCAAGGGAAAGATAATATTGGACGTGACAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGGCCATGGTTTAACACTTGGAAGGGAAAAACATCAACTCCACCTGTTCTTAGCCGTGCTATTGGATTACCGGTAGATGTAGATGGCCTCTATAATCTGTTTCCTCTGTTTAAACCACCTGGCTTGTAG

Protein sequence

>Msa1348770

METKLLNPPSLIHFPSSSVSSSSSLSTRTFFPFHHYRSFKLIIAHNSHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYFKVSIPEKRQSFCFMYSVENPAFPKELTTLELAQYGPRFTGVGAQILGAGDKYICQYTPQSHNFWGSRNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVFEGFQVTPLWNQGFICDDGRSDYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWVKKLSFFTEWSGCLMQAQCNVFEGASGEIALTAAGGLRQIPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDQGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTSTPPVLSRAIGLPVDVDGLYNLFPLFKPPGL*