AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0481620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481620 MtrunA17_Chr7g0274021 93.074 462 28 3 1 461 1 459 0.0 882
Msa0481620 MtrunA17_Chr1g0148851 32.181 463 276 11 9 454 5 446 8.61e-72 233
Msa0481620 MtrunA17_Chr8g0378151 25.527 427 263 14 29 439 32 419 1.00e-30 123
Msa0481620 MtrunA17_Chr2g0298091 26.067 445 269 18 16 439 19 424 1.98e-26 111
Msa0481620 MtrunA17_Chr4g0072041 28.571 364 235 11 8 355 13 367 2.25e-25 108
Msa0481620 MtrunA17_Chr8g0386141 26.844 339 220 11 31 354 28 353 2.10e-24 105
Msa0481620 MtrunA17_Chr2g0334001 24.155 414 274 13 39 436 33 422 5.57e-24 103
Msa0481620 MtrunA17_Chr1g0163441 25.835 449 265 20 16 439 18 423 8.00e-23 100
Msa0481620 MtrunA17_Chr3g0132831 25.113 442 278 17 16 439 18 424 1.50e-22 99.8
Msa0481620 MtrunA17_Chr8g0371821 27.003 337 201 11 41 355 35 348 5.16e-22 98.2
Msa0481620 MtrunA17_Chr4g0001861 24.331 411 278 13 39 436 33 423 7.95e-22 97.4
Msa0481620 MtrunA17_Chr3g0134091 27.638 398 258 11 61 445 65 445 2.53e-21 96.3
Msa0481620 MtrunA17_Chr7g0224391 25.683 366 240 11 6 354 12 362 8.58e-21 94.4
Msa0481620 MtrunA17_Chr4g0054081 24.878 410 274 11 46 433 45 442 4.03e-20 92.8
Msa0481620 MtrunA17_Chr3g0132001 25.203 369 246 13 1 354 6 359 4.05e-19 89.4
Msa0481620 MtrunA17_Chr8g0376901 26.347 334 207 12 8 324 2 313 5.89e-17 82.8
Msa0481620 MtrunA17_Chr4g0027071 24.348 345 232 12 31 355 33 368 4.00e-16 80.5
Msa0481620 MtrunA17_Chr3g0087401 25.513 341 220 12 31 348 23 352 7.06e-16 79.7
Msa0481620 MtrunA17_Chr3g0134101 24.688 401 252 12 61 446 83 448 2.53e-15 77.8
Msa0481620 MtrunA17_Chr3g0134041 26.061 330 221 11 38 352 40 361 5.24e-15 77.0
Msa0481620 MtrunA17_Chr7g0253501 21.429 378 264 11 9 361 2 371 1.30e-14 75.9
Msa0481620 MtrunA17_Chr3g0134061 23.278 421 279 14 51 446 55 456 1.84e-14 75.5
Msa0481620 MtrunA17_Chr3g0134121 24.880 418 246 13 61 446 66 447 3.19e-14 74.7
Msa0481620 MtrunA17_Chr5g0408911 21.807 321 227 9 44 354 55 361 3.54e-14 74.3
Msa0481620 MtrunA17_Chr6g0470591 24.126 286 193 9 64 333 71 348 5.76e-14 73.9
Msa0481620 MtrunA17_Chr7g0273721 23.706 367 237 12 43 391 45 386 6.30e-14 73.6
Msa0481620 MtrunA17_Chr8g0376891 24.852 338 207 12 8 324 2 313 1.56e-13 72.4
Msa0481620 MtrunA17_Chr2g0311401 22.259 301 208 6 149 436 5 292 1.62e-13 71.2
Msa0481620 MtrunA17_Chr5g0438681 23.006 326 217 10 8 319 2 307 3.55e-13 71.2
Msa0481620 MtrunA17_Chr5g0399681 28.095 210 129 7 45 241 49 249 3.64e-13 70.9
Msa0481620 MtrunA17_Chr1g0191081 23.197 319 220 11 27 331 35 342 7.88e-13 70.1
Msa0481620 MtrunA17_Chr7g0253531 21.485 377 265 11 9 361 2 371 1.92e-12 68.9
Msa0481620 MtrunA17_Chr7g0273761 24.062 320 210 9 45 345 418 723 2.75e-12 69.3
Msa0481620 MtrunA17_Chr4g0010351 26.748 329 183 14 60 352 51 357 3.61e-12 67.8
Msa0481620 MtrunA17_Chr3g0141851 23.003 313 218 8 57 353 54 359 4.35e-12 67.8
Msa0481620 MtrunA17_Chr1g0165681 22.866 328 216 9 37 345 38 347 4.74e-12 67.8
Msa0481620 MtrunA17_Chr5g0438701 23.030 330 220 10 8 324 2 310 8.47e-12 67.0
Msa0481620 MtrunA17_Chr7g0253541 21.675 406 254 11 64 429 60 441 3.24e-11 65.1
Msa0481620 MtrunA17_Chr8g0376911 22.074 299 196 9 27 309 22 299 8.88e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481620 AT4G29250.1 29.677 465 286 14 8 454 13 454 4.85e-57 196
Msa0481620 AT4G24510.1 27.314 443 260 23 16 439 13 412 2.78e-27 113
Msa0481620 AT3G23840.1 25.542 415 248 16 16 417 19 385 2.49e-24 105
Msa0481620 AT5G41040.2 26.706 337 219 9 31 351 38 362 4.39e-24 104
Msa0481620 AT5G41040.1 26.706 337 219 9 31 351 54 378 5.37e-24 104
Msa0481620 AT3G48720.1 25.074 339 230 10 29 354 28 355 5.62e-21 95.5
Msa0481620 AT2G19070.1 25.203 369 248 7 9 358 4 363 9.33e-21 94.7
Msa0481620 AT4G13840.1 23.356 441 276 16 16 439 21 416 9.39e-21 94.7
Msa0481620 AT5G63560.1 25.000 340 225 11 29 354 28 351 1.40e-19 91.3
Msa0481620 AT1G65450.1 24.011 379 252 9 5 360 14 379 4.24e-19 89.7
Msa0481620 AT5G07080.1 24.855 346 224 11 64 391 70 397 7.20e-19 89.4
Msa0481620 AT5G57840.1 22.727 440 298 13 21 439 12 430 5.96e-18 86.3
Msa0481620 AT5G48930.1 23.659 410 280 13 40 436 34 423 1.19e-17 85.5
Msa0481620 AT5G02890.1 30.247 162 99 5 34 186 36 192 2.62e-17 83.6
Msa0481620 AT1G24420.2 27.688 372 232 16 97 454 88 436 6.51e-17 83.2
Msa0481620 AT1G24420.1 27.688 372 232 16 97 454 88 436 6.51e-17 83.2
Msa0481620 AT1G24430.1 24.382 283 196 5 29 310 27 292 4.25e-15 77.4
Msa0481620 AT1G78990.1 24.540 326 221 10 43 356 46 358 1.16e-14 76.3
Msa0481620 AT1G27620.1 24.104 307 205 9 64 353 58 353 3.90e-14 74.7
Msa0481620 AT1G32910.1 24.675 308 202 11 64 354 65 359 5.15e-13 71.2
Msa0481620 AT5G67150.1 24.688 320 183 12 64 348 61 357 6.24e-13 70.9
Msa0481620 AT5G23940.1 22.458 472 308 19 8 446 2 448 2.73e-12 68.9

Find 174 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCTCTCAGCTCTATTT+TGG 0.152255 3_3:+87935106 Msa0481620:CDS
TCACTCCCAACTGGATATTT+TGG 0.171448 3_3:+87935219 Msa0481620:CDS
CTGTTTGAGCCAACAATTAT+TGG 0.196140 3_3:+87935736 Msa0481620:three_prime_UTR
AGGATGGTGGTACTGGTAAT+TGG 0.217298 3_3:+87933607 Msa0481620:CDS
TCTTTCCCATACATGCATTT+AGG 0.229198 3_3:-87935420 None:intergenic
GAAACTGAGGAAGGGAAATT+TGG 0.242297 3_3:+87935393 Msa0481620:CDS
TGGGGCTGTGGCGGTGAGTT+TGG 0.257423 3_3:-87934879 None:intergenic
GAAATGGAGAATGGTGAATT+AGG 0.275452 3_3:+87935282 Msa0481620:CDS
AGTTTGATTATGAATTTCTT+TGG 0.283260 3_3:-87935151 None:intergenic
ATGGTTTAGGTCATTTGAAT+TGG 0.295132 3_3:+87933506 Msa0481620:CDS
TTAATAAGTGTAGGCTTGTT+TGG 0.300216 3_3:+87935796 Msa0481620:three_prime_UTR
TGTTTGGAAGAATTAGTTAT+TGG 0.314360 3_3:+87935812 Msa0481620:three_prime_UTR
GGGGCTGTGGCGGTGAGTTT+GGG 0.330855 3_3:-87934878 None:intergenic
AAGAAAGGTGGGTTGGAAAT+GGG 0.334991 3_3:-87934898 None:intergenic
CATCATCATTCTTCAAATCA+TGG 0.335273 3_3:+87934854 Msa0481620:CDS
TAAAGTACCTGAATTCTAAA+AGG 0.341780 3_3:-87933780 None:intergenic
TCGATATACCCGACAATAAC+GGG 0.355602 3_3:+87933561 Msa0481620:CDS
AAATTAACGGGGACACAAAA+TGG 0.363890 3_3:-87933175 None:intergenic
GAAGAAAGGTGGGTTGGAAA+TGG 0.366284 3_3:-87934899 None:intergenic
AAGTCAAATGGGGTGGCATT+AGG 0.368079 3_3:-87935087 None:intergenic
TTTACTAGAATGAAATTGTT+TGG 0.375244 3_3:+87935933 Msa0481620:three_prime_UTR
TCCAATGGAGGGTCCTTAAC+GGG 0.376598 3_3:-87936080 None:intergenic
ATAATTGTCCGTTCCTTAAC+GGG 0.380921 3_3:-87936120 None:intergenic
GGAACACCTAAATGCATGTA+TGG 0.381659 3_3:+87935414 Msa0481620:CDS
AAGGAGGAGGATGGTGGTAC+TGG 0.384784 3_3:+87933600 Msa0481620:CDS
GGTGAAGAGGTAGTATTGAT+TGG 0.386573 3_3:-87934925 None:intergenic
GTTTGATTATGAATTTCTTT+GGG 0.388732 3_3:-87935150 None:intergenic
GGATGGTGGTACTGGTAATT+GGG 0.389341 3_3:+87933608 Msa0481620:CDS
AAGGAACGGACAATTATATA+AGG 0.395956 3_3:+87936126 Msa0481620:three_prime_UTR
TATAATTGTCCGTTCCTTAA+CGG 0.399494 3_3:-87936121 None:intergenic
CCCAACCGGCCCGTTATTGT+CGG 0.402575 3_3:-87933570 None:intergenic
GTCAAGCAGACCAGTGAGTT+CGG 0.405126 3_3:+87933398 Msa0481620:CDS
AAAGAAGGTGGTGTAGCAAT+AGG 0.409784 3_3:+87934793 Msa0481620:CDS
CAGCCAGCAAGGATAATCTT+TGG 0.411817 3_3:-87935678 None:intergenic
CTCCAATGGAGGGTCCTTAA+CGG 0.418414 3_3:-87936081 None:intergenic
TTCCGGTAGGAGACTTAAAT+AGG 0.422742 3_3:+87935993 Msa0481620:three_prime_UTR
GTCGATATACCCGACAATAA+CGG 0.423205 3_3:+87933560 Msa0481620:CDS
TCAAGCAGACCAGTGAGTTC+GGG 0.424977 3_3:+87933399 Msa0481620:CDS
AATTTGGAATGTTGTTGGTT+AGG 0.426812 3_3:-87934951 None:intergenic
GAGCCAAAGATTATCCTTGC+TGG 0.432338 3_3:+87935675 Msa0481620:CDS
TGGCTATCATCTTCTGCTAC+TGG 0.433577 3_3:+87933696 Msa0481620:CDS
TAATTCACACACACTTGAAA+GGG 0.433647 3_3:+87935319 Msa0481620:CDS
GGTTGGAAATGGGGCTGTGG+CGG 0.435915 3_3:-87934888 None:intergenic
GTACTGGTAATTGGGAAGTT+AGG 0.436148 3_3:+87933616 Msa0481620:CDS
GTCTACACCCGTCAACTTGT+GGG 0.443630 3_3:-87933427 None:intergenic
ATAAAACCATCACTCCCAAC+TGG 0.443926 3_3:+87935210 Msa0481620:CDS
TGCTGGTGTTAGAGTCATAA+AGG 0.445154 3_3:+87933647 Msa0481620:CDS
TTTAAGTCTCCTACCGGAAA+CGG 0.447129 3_3:-87935989 None:intergenic
CCTCCTTCTCTCGGCCCAAC+CGG 0.448689 3_3:-87933584 None:intergenic
TGTTGTAGCTAAATTCCGTT+TGG 0.449947 3_3:+87935768 Msa0481620:three_prime_UTR
GTGGGTTGGAAATGGGGCTG+TGG 0.452154 3_3:-87934891 None:intergenic
CCGACAATAACGGGCCGGTT+GGG 0.453713 3_3:+87933570 Msa0481620:CDS
AAATAAAGTCTTCAATAGAA+TGG 0.455151 3_3:+87935355 Msa0481620:CDS
GAGCTGAGAGGAAGTCAAAT+GGG 0.457275 3_3:-87935098 None:intergenic
ACGCTTACACTGATTATAAT+CGG 0.458377 3_3:-87935886 None:intergenic
ACTACCCTGCCAATAATTGT+TGG 0.465832 3_3:-87935745 None:intergenic
ACAAGGACCACTCCCCGTTA+AGG 0.467855 3_3:+87936067 Msa0481620:three_prime_UTR
ACTATTTCAGAGGAAATTAA+CGG 0.471112 3_3:-87933188 None:intergenic
TGAGGCACAGCTTATTGCTT+GGG 0.472460 3_3:+87933725 Msa0481620:CDS
TTGAGCCAACAATTATTGGC+AGG 0.473229 3_3:+87935740 Msa0481620:three_prime_UTR
GGATGAATTTGGAATGTTGT+TGG 0.474167 3_3:-87934956 None:intergenic
TCAGACAATGATTCCCTCAA+TGG 0.481558 3_3:-87933531 None:intergenic
CTCTCTCCTGAGTAACTAAC+GGG 0.485509 3_3:+87936154 Msa0481620:three_prime_UTR
CTAAAAGGTGACCATGTGCT+AGG 0.487865 3_3:-87933765 None:intergenic
CGTTTCCAAAATATCCAGTT+GGG 0.487866 3_3:-87935224 None:intergenic
TTGATTGGAGTGAAGAAAGG+TGG 0.490101 3_3:-87934910 None:intergenic
CTATTTCAGAGGAAATTAAC+GGG 0.490404 3_3:-87933187 None:intergenic
ATTTGAATTGGATCCATTGA+GGG 0.492343 3_3:+87933518 Msa0481620:CDS
GGTCTACACCCGTCAACTTG+TGG 0.496901 3_3:-87933428 None:intergenic
CACCATCCTCCTCCTTCTCT+CGG 0.500291 3_3:-87933593 None:intergenic
CACTTATTAATTCATCCAAA+CGG 0.501081 3_3:-87935783 None:intergenic
ATGAGGCACAGCTTATTGCT+TGG 0.502747 3_3:+87933724 Msa0481620:CDS
AAATATCCAGTTGGGAGTGA+TGG 0.503498 3_3:-87935216 None:intergenic
TTAATTCACACACACTTGAA+AGG 0.506149 3_3:+87935318 Msa0481620:CDS
GATATTAGAGCATCTCCAAT+GGG 0.507222 3_3:+87936031 Msa0481620:three_prime_UTR
CATTTGAATTGGATCCATTG+AGG 0.507624 3_3:+87933517 Msa0481620:CDS
AGAAAGGTGGGTTGGAAATG+GGG 0.508550 3_3:-87934897 None:intergenic
GGGCCGGTTGGGCCGAGAGA+AGG 0.509409 3_3:+87933581 Msa0481620:CDS
AACTGTGATAGTAATGTTGA+AGG 0.511473 3_3:+87935605 Msa0481620:CDS
CCAACCGGCCCGTTATTGTC+GGG 0.512607 3_3:-87933569 None:intergenic
CCCCGTTAAGGACCCTCCAT+TGG 0.513158 3_3:+87936079 Msa0481620:three_prime_UTR
GTGTATGATAACTCATACCA+TGG 0.520501 3_3:-87933449 None:intergenic
GGAATGTTGTTGGTTAGGAT+TGG 0.521481 3_3:-87934946 None:intergenic
GGAGGGTCCTTAACGGGGAG+TGG 0.522087 3_3:-87936074 None:intergenic
GATTATCCTTGCTGGCTGTA+GGG 0.526008 3_3:+87935683 Msa0481620:CDS
ATTAGTTATTGGCATGGCAG+TGG 0.526180 3_3:+87935823 Msa0481620:three_prime_UTR
AAAATTGAAGAAATGGAGAA+TGG 0.526372 3_3:+87935273 Msa0481620:CDS
CGAACTATTTATAACAAACA+TGG 0.526568 3_3:-87933214 None:intergenic
GTATTGATTGGAGTGAAGAA+AGG 0.526703 3_3:-87934913 None:intergenic
AGAATGGTTTGAGTCACAAA+AGG 0.528973 3_3:+87935371 Msa0481620:CDS
CCCGACAATAACGGGCCGGT+TGG 0.531253 3_3:+87933569 Msa0481620:CDS
CCGGTTGGGCCGAGAGAAGG+AGG 0.533083 3_3:+87933584 Msa0481620:CDS
GGAGTGGTCCTTGTTAAGTA+AGG 0.533286 3_3:-87936058 None:intergenic
AGATTATCCTTGCTGGCTGT+AGG 0.533649 3_3:+87935682 Msa0481620:CDS
TGATTGGAGTGAAGAAAGGT+GGG 0.533702 3_3:-87934909 None:intergenic
ATAGTGATGCCTTCTTCAGA+TGG 0.535268 3_3:+87935570 Msa0481620:CDS
GCAAACCCTCCATCTGAAGA+AGG 0.535965 3_3:-87935579 None:intergenic
AGAGCTGAGAGGAAGTCAAA+TGG 0.537078 3_3:-87935099 None:intergenic
GGTAAGACCCACAAGTTGAC+GGG 0.538277 3_3:+87933420 Msa0481620:CDS
GTAATAAAATGTGTACTACT+TGG 0.539053 3_3:+87936193 Msa0481620:three_prime_UTR
AGCTCATGTTTCTTGTCGAG+TGG 0.541963 3_3:+87935521 Msa0481620:CDS
CGTTAAGGACCCTCCATTGG+AGG 0.542327 3_3:+87936082 Msa0481620:three_prime_UTR
TGGGTCTTACCCGAACTCAC+TGG 0.545145 3_3:-87933408 None:intergenic
TGAACTTGAGAATTTGAAAG+TGG 0.545632 3_3:-87935022 None:intergenic
TATGTTTGATGAAGAGGTAA+TGG 0.545889 3_3:-87934992 None:intergenic
GTGGGGAATGTGGACGGTGA+AGG 0.546274 3_3:+87935540 Msa0481620:CDS
CAGATAAATAGCTTCAAAGA+AGG 0.547152 3_3:+87934778 Msa0481620:intron
GCTCATGTTTCTTGTCGAGT+GGG 0.548354 3_3:+87935522 Msa0481620:CDS
GTTGGTTAGGATTGGTGAAG+AGG 0.549410 3_3:-87934938 None:intergenic
GTCAGAGACAGATCAGTGTA+AGG 0.552279 3_3:+87933347 Msa0481620:CDS
TGAGAATTTGAAAGTGGCTG+TGG 0.559985 3_3:-87935016 None:intergenic
TTATTACTTCTTTATGCAAG+TGG 0.560226 3_3:-87936218 None:intergenic
TGGAGTGAAGAAAGGTGGGT+TGG 0.561597 3_3:-87934905 None:intergenic
TGATGCCTTCTTCAGATGGA+GGG 0.561884 3_3:+87935574 Msa0481620:CDS
TGATATTAGAGCATCTCCAA+TGG 0.563836 3_3:+87936030 Msa0481620:three_prime_UTR
TATTACTTCTTTATGCAAGT+GGG 0.564425 3_3:-87936217 None:intergenic
TTGGATGAATTAATAAGTGT+AGG 0.567829 3_3:+87935787 Msa0481620:three_prime_UTR
GAAGTTAGGTGTAATGATGC+TGG 0.568774 3_3:+87933630 Msa0481620:CDS
GTGAGACCCGTTAGTTACTC+AGG 0.569093 3_3:-87936160 None:intergenic
CTCATGTTTCTTGTCGAGTG+GGG 0.569487 3_3:+87935523 Msa0481620:CDS
GTTAGTTACTCAGGAGAGAG+AGG 0.570925 3_3:-87936151 None:intergenic
GACCTATTTAAGTCTCCTAC+CGG 0.573310 3_3:-87935995 None:intergenic
GGAAGAATTAGTTATTGGCA+TGG 0.577018 3_3:+87935817 Msa0481620:three_prime_UTR
AACACTGGATTCAAAACTAA+CGG 0.577037 3_3:+87933371 Msa0481620:CDS
GGGTAAGACCCACAAGTTGA+CGG 0.579828 3_3:+87933419 Msa0481620:CDS
ATTGAGTTCCCGTTAAGGAA+CGG 0.580857 3_3:+87936112 Msa0481620:three_prime_UTR
GTGATGCCTTCTTCAGATGG+AGG 0.582800 3_3:+87935573 Msa0481620:CDS
GGCCGAGAGAAGGAGGAGGA+TGG 0.583468 3_3:+87933591 Msa0481620:CDS
GAACACCTAAATGCATGTAT+GGG 0.584202 3_3:+87935415 Msa0481620:CDS
TCACAAAAGGAAACTGAGGA+AGG 0.584832 3_3:+87935384 Msa0481620:CDS
TAAAAGGTGACCATGTGCTA+GGG 0.586599 3_3:-87933764 None:intergenic
TAGAGTCATAAAGGCTAATG+TGG 0.586817 3_3:+87933656 Msa0481620:CDS
TCTCTCTCCTGAGTAACTAA+CGG 0.587505 3_3:+87936153 Msa0481620:three_prime_UTR
GATGAAGAGGTAATGGTCTG+TGG 0.593007 3_3:-87934985 None:intergenic
AGATCAGTGTAAGGTAACAC+TGG 0.594403 3_3:+87933356 Msa0481620:CDS
TGTGGCTATGTTTGATGAAG+AGG 0.596735 3_3:-87934998 None:intergenic
GACCATGTGCTAGGGTCATG+AGG 0.598936 3_3:-87933756 None:intergenic
GCGTTTCCAAAATATCCAGT+TGG 0.599293 3_3:-87935225 None:intergenic
CGAGAGAAGGAGGAGGATGG+TGG 0.600282 3_3:+87933594 Msa0481620:CDS
TGTGATAGTAATGTTGAAGG+AGG 0.600877 3_3:+87935608 Msa0481620:CDS
ATGTTGAAGGAGGAAGAACT+TGG 0.600995 3_3:+87935618 Msa0481620:CDS
AGACTTAAATAGGTCTCCTA+CGG 0.605396 3_3:+87936003 Msa0481620:three_prime_UTR
TTCTTGTCGAGTGGGGAATG+TGG 0.607119 3_3:+87935530 Msa0481620:CDS
ATAAATAGCTTCAAAGAAGG+TGG 0.607597 3_3:+87934781 Msa0481620:CDS
TGGATAGTACTATTGATGAA+TGG 0.608688 3_3:+87933676 Msa0481620:CDS
GTTGGGCCGAGAGAAGGAGG+AGG 0.619970 3_3:+87933587 Msa0481620:CDS
TTCTGCTACTGGATCTGATG+AGG 0.621739 3_3:+87933707 Msa0481620:CDS
CACAAAAGGAAACTGAGGAA+GGG 0.622438 3_3:+87935385 Msa0481620:CDS
AATTCACACACACTTGAAAG+GGG 0.623746 3_3:+87935320 Msa0481620:CDS
TGTCGAGTGGGGAATGTGGA+CGG 0.625379 3_3:+87935534 Msa0481620:CDS
TATAATCAGTGTAAGCGTGT+GGG 0.629877 3_3:+87935891 Msa0481620:three_prime_UTR
GCTCTAATATCACCTACCGT+AGG 0.630800 3_3:-87936019 None:intergenic
TGAGCCAACAATTATTGGCA+GGG 0.632053 3_3:+87935741 Msa0481620:three_prime_UTR
TTAAATAGGTCTCCTACGGT+AGG 0.634859 3_3:+87936007 Msa0481620:three_prime_UTR
TTATAATCAGTGTAAGCGTG+TGG 0.637530 3_3:+87935890 Msa0481620:three_prime_UTR
AACATGGAGTACTATTTCAG+AGG 0.639440 3_3:-87933198 None:intergenic
TAACGGGGACACAAAATGGA+GGG 0.642725 3_3:-87933171 None:intergenic
TTCGCAATATTAATGAAGCT+AGG 0.644020 3_3:+87933233 Msa0481620:five_prime_UTR
TGCCTCATGACCCTAGCACA+TGG 0.645951 3_3:+87933754 Msa0481620:CDS
CCAATGGAGGGTCCTTAACG+GGG 0.647949 3_3:-87936079 None:intergenic
ACTCGACAAGAAACATGAGC+TGG 0.648220 3_3:-87935519 None:intergenic
TTAGTTACTCAGGAGAGAGA+GGG 0.648431 3_3:-87936150 None:intergenic
TGAGAGGAAGTCAAATGGGG+TGG 0.650646 3_3:-87935094 None:intergenic
TGAGTCACAAAAGGAAACTG+AGG 0.655458 3_3:+87935380 Msa0481620:CDS
AACGGGGACACAAAATGGAG+GGG 0.665746 3_3:-87933170 None:intergenic
TTAACGGGGACACAAAATGG+AGG 0.666969 3_3:-87933172 None:intergenic
TATTAGAGCATCTCCAATGG+GGG 0.671314 3_3:+87936033 Msa0481620:three_prime_UTR
TATACCCGACAATAACGGGC+CGG 0.671866 3_3:+87933565 Msa0481620:CDS
AAGTTGACGGGTGTAGACCA+TGG 0.675286 3_3:+87933432 Msa0481620:CDS
AGCTGAGAGGAAGTCAAATG+GGG 0.678609 3_3:-87935097 None:intergenic
ATTAGAGCATCTCCAATGGG+GGG 0.701573 3_3:+87936034 Msa0481620:three_prime_UTR
ATATTAGAGCATCTCCAATG+GGG 0.709931 3_3:+87936032 Msa0481620:three_prime_UTR
GAGTCCAAAATAGAGCTGAG+AGG 0.726138 3_3:-87935110 None:intergenic
TATTTCAGAGGAAATTAACG+GGG 0.745503 3_3:-87933186 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATCTTGTAATTTAAA+CGG - chr3_3:87934034-87934053 None:intergenic 10.0%
!! TTAATATTAATATTAAAGCT+AGG + chr3_3:87934049-87934068 Msa0481620:intron 10.0%
!! ATTACAAAAATGAAGAAAAA+TGG + chr3_3:87933487-87933506 Msa0481620:CDS 15.0%
!!! AGCAAAATAATATATTTTCA+TGG + chr3_3:87934415-87934434 Msa0481620:intron 15.0%
!!! ACATTTTTTTTTTTGGATTT+TGG - chr3_3:87935067-87935086 None:intergenic 15.0%
!!! TTTGTTTATTTACTCATTTT+TGG + chr3_3:87935964-87935983 Msa0481620:three_prime_UTR 15.0%
!! AAAATGAAGAAAAATGGTTT+AGG + chr3_3:87933493-87933512 Msa0481620:CDS 20.0%
!! ATGATTGATACTTAAAATTG+TGG - chr3_3:87933884-87933903 None:intergenic 20.0%
!!! TAGATTTTTTTTTCCTACTT+TGG - chr3_3:87933931-87933950 None:intergenic 20.0%
!! AGAAAAGGAAGAAATTAAAT+TGG - chr3_3:87934337-87934356 None:intergenic 20.0%
!! ATTAAAATATACACCTCAAA+TGG - chr3_3:87934499-87934518 None:intergenic 20.0%
!! GTATAGATAAATTGAATTAG+TGG + chr3_3:87934699-87934718 Msa0481620:intron 20.0%
!!! CATTAGGACATTTTTTTTTT+TGG - chr3_3:87935074-87935093 None:intergenic 20.0%
!! GTTTGATTATGAATTTCTTT+GGG - chr3_3:87935153-87935172 None:intergenic 20.0%
!! AGTTTGATTATGAATTTCTT+TGG - chr3_3:87935154-87935173 None:intergenic 20.0%
!! TTCACTAAAAATTGAAGAAA+TGG + chr3_3:87935266-87935285 Msa0481620:CDS 20.0%
!! AAATAAAGTCTTCAATAGAA+TGG + chr3_3:87935355-87935374 Msa0481620:CDS 20.0%
!! TTTACTAGAATGAAATTGTT+TGG + chr3_3:87935933-87935952 Msa0481620:three_prime_UTR 20.0%
! ACTATTTCAGAGGAAATTAA+CGG - chr3_3:87933191-87933210 None:intergenic 25.0%
! CGAACTATTTATAACAAACA+TGG - chr3_3:87933217-87933236 None:intergenic 25.0%
!! TAAAGTACCTGAATTCTAAA+AGG - chr3_3:87933783-87933802 None:intergenic 25.0%
!!! TTTTTTTTCCTACTTTGGTT+AGG - chr3_3:87933926-87933945 None:intergenic 25.0%
! GAAAATGGAGAAAAATTCAT+GGG + chr3_3:87934100-87934119 Msa0481620:intron 25.0%
! AAAAATAACGTGAAAGATCT+AGG - chr3_3:87934153-87934172 None:intergenic 25.0%
!!! TTTATTTTTTTCAACCTGAG+AGG + chr3_3:87934171-87934190 Msa0481620:intron 25.0%
! CATTTAGATTAAGAGAAAGA+TGG - chr3_3:87934216-87934235 None:intergenic 25.0%
! CATCTTTCTCTTAATCTAAA+TGG + chr3_3:87934214-87934233 Msa0481620:intron 25.0%
!! TGAAGACTATAATCTAAAAC+TGG + chr3_3:87934269-87934288 Msa0481620:intron 25.0%
! CAATAATGTAGATGTAAATC+AGG - chr3_3:87934587-87934606 None:intergenic 25.0%
! GATAAATTGAATTAGTGGTA+CGG + chr3_3:87934704-87934723 Msa0481620:intron 25.0%
! ATAAATTGAATTAGTGGTAC+GGG + chr3_3:87934705-87934724 Msa0481620:intron 25.0%
!!! TTTTTTTTGGATTTTGGAGA+GGG - chr3_3:87935061-87935080 None:intergenic 25.0%
!!! TTTTTTTTTGGATTTTGGAG+AGG - chr3_3:87935062-87935081 None:intergenic 25.0%
! AAAATTGAAGAAATGGAGAA+TGG + chr3_3:87935273-87935292 Msa0481620:CDS 25.0%
! CACTTATTAATTCATCCAAA+CGG - chr3_3:87935786-87935805 None:intergenic 25.0%
! TTGGATGAATTAATAAGTGT+AGG + chr3_3:87935787-87935806 Msa0481620:three_prime_UTR 25.0%
! TGTTTGGAAGAATTAGTTAT+TGG + chr3_3:87935812-87935831 Msa0481620:three_prime_UTR 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr3_3:87936193-87936212 Msa0481620:three_prime_UTR 25.0%
TATTTCAGAGGAAATTAACG+GGG - chr3_3:87933189-87933208 None:intergenic 30.0%
CTATTTCAGAGGAAATTAAC+GGG - chr3_3:87933190-87933209 None:intergenic 30.0%
TTCGCAATATTAATGAAGCT+AGG + chr3_3:87933233-87933252 Msa0481620:five_prime_UTR 30.0%
AACACTGGATTCAAAACTAA+CGG + chr3_3:87933371-87933390 Msa0481620:CDS 30.0%
ATGGTTTAGGTCATTTGAAT+TGG + chr3_3:87933506-87933525 Msa0481620:CDS 30.0%
ATTTGAATTGGATCCATTGA+GGG + chr3_3:87933518-87933537 Msa0481620:CDS 30.0%
TGGATAGTACTATTGATGAA+TGG + chr3_3:87933676-87933695 Msa0481620:CDS 30.0%
! TCAGGTACTTTAATTTATGC+TGG + chr3_3:87933791-87933810 Msa0481620:intron 30.0%
!! AGTAAGTATGAGCTATTTTG+TGG + chr3_3:87933814-87933833 Msa0481620:intron 30.0%
GGAAAATGGAGAAAAATTCA+TGG + chr3_3:87934099-87934118 Msa0481620:intron 30.0%
! AATTGATAGTATACACGAGA+GGG - chr3_3:87934361-87934380 None:intergenic 30.0%
! AAATTGATAGTATACACGAG+AGG - chr3_3:87934362-87934381 None:intergenic 30.0%
AAAATATACACCTCAAATGG+AGG - chr3_3:87934496-87934515 None:intergenic 30.0%
TGATGAAGTCTCTAATGAAA+GGG - chr3_3:87934555-87934574 None:intergenic 30.0%
ATGATGAAGTCTCTAATGAA+AGG - chr3_3:87934556-87934575 None:intergenic 30.0%
! GAAGGTATGAAGTAATAAAC+TGG + chr3_3:87934743-87934762 Msa0481620:intron 30.0%
GTATGAAGTAATAAACTGGT+GGG + chr3_3:87934747-87934766 Msa0481620:intron 30.0%
TATGAAGTAATAAACTGGTG+GGG + chr3_3:87934748-87934767 Msa0481620:intron 30.0%
CAGATAAATAGCTTCAAAGA+AGG + chr3_3:87934778-87934797 Msa0481620:intron 30.0%
ATAAATAGCTTCAAAGAAGG+TGG + chr3_3:87934781-87934800 Msa0481620:CDS 30.0%
CATCATCATTCTTCAAATCA+TGG + chr3_3:87934854-87934873 Msa0481620:CDS 30.0%
! AATTTGGAATGTTGTTGGTT+AGG - chr3_3:87934954-87934973 None:intergenic 30.0%
TATGTTTGATGAAGAGGTAA+TGG - chr3_3:87934995-87935014 None:intergenic 30.0%
TGAACTTGAGAATTTGAAAG+TGG - chr3_3:87935025-87935044 None:intergenic 30.0%
TTAATTCACACACACTTGAA+AGG + chr3_3:87935318-87935337 Msa0481620:CDS 30.0%
TAATTCACACACACTTGAAA+GGG + chr3_3:87935319-87935338 Msa0481620:CDS 30.0%
AACTGTGATAGTAATGTTGA+AGG + chr3_3:87935605-87935624 Msa0481620:CDS 30.0%
! TTAATAAGTGTAGGCTTGTT+TGG + chr3_3:87935796-87935815 Msa0481620:three_prime_UTR 30.0%
! ACGCTTACACTGATTATAAT+CGG - chr3_3:87935889-87935908 None:intergenic 30.0%
TATAATTGTCCGTTCCTTAA+CGG - chr3_3:87936124-87936143 None:intergenic 30.0%
AAGGAACGGACAATTATATA+AGG + chr3_3:87936126-87936145 Msa0481620:three_prime_UTR 30.0%
AAATTAACGGGGACACAAAA+TGG - chr3_3:87933178-87933197 None:intergenic 35.0%
! AACATGGAGTACTATTTCAG+AGG - chr3_3:87933201-87933220 None:intergenic 35.0%
GTGTATGATAACTCATACCA+TGG - chr3_3:87933452-87933471 None:intergenic 35.0%
CATTTGAATTGGATCCATTG+AGG + chr3_3:87933517-87933536 Msa0481620:CDS 35.0%
TAGAGTCATAAAGGCTAATG+TGG + chr3_3:87933656-87933675 Msa0481620:CDS 35.0%
!!! ATGGTCACCTTTTAGAATTC+AGG + chr3_3:87933773-87933792 Msa0481620:CDS 35.0%
! TTTTCTTGCCTAACCAAAGT+AGG + chr3_3:87933915-87933934 Msa0481620:intron 35.0%
CAACATGCATATCCCAAAAA+GGG + chr3_3:87933964-87933983 Msa0481620:intron 35.0%
TAGGAGAGACAAATCACTTA+AGG + chr3_3:87934068-87934087 Msa0481620:intron 35.0%
AGACAAATCACTTAAGGTTG+TGG + chr3_3:87934074-87934093 Msa0481620:intron 35.0%
AAATCACTTAAGGTTGTGGA+TGG + chr3_3:87934078-87934097 Msa0481620:intron 35.0%
TTAAGGTTGTGGATGGAAAA+TGG + chr3_3:87934085-87934104 Msa0481620:intron 35.0%
GATGAAGTCTCTAATGAAAG+GGG - chr3_3:87934554-87934573 None:intergenic 35.0%
!! GGGTGATTTGGTATTTAAGA+AGG + chr3_3:87934725-87934744 Msa0481620:intron 35.0%
GGTATGAAGTAATAAACTGG+TGG + chr3_3:87934746-87934765 Msa0481620:intron 35.0%
!! GTATTGATTGGAGTGAAGAA+AGG - chr3_3:87934916-87934935 None:intergenic 35.0%
! GGATGAATTTGGAATGTTGT+TGG - chr3_3:87934959-87934978 None:intergenic 35.0%
!!! TGTGGTTTTAGGGATGAATT+TGG - chr3_3:87934970-87934989 None:intergenic 35.0%
CGTTTCCAAAATATCCAGTT+GGG - chr3_3:87935227-87935246 None:intergenic 35.0%
GAAATGGAGAATGGTGAATT+AGG + chr3_3:87935282-87935301 Msa0481620:CDS 35.0%
AATTCACACACACTTGAAAG+GGG + chr3_3:87935320-87935339 Msa0481620:CDS 35.0%
AGAATGGTTTGAGTCACAAA+AGG + chr3_3:87935371-87935390 Msa0481620:CDS 35.0%
GAACACCTAAATGCATGTAT+GGG + chr3_3:87935415-87935434 Msa0481620:CDS 35.0%
TCTTTCCCATACATGCATTT+AGG - chr3_3:87935423-87935442 None:intergenic 35.0%
! AGAGTTAACTTTTGTCTGCA+TGG + chr3_3:87935440-87935459 Msa0481620:CDS 35.0%
TGTGATAGTAATGTTGAAGG+AGG + chr3_3:87935608-87935627 Msa0481620:CDS 35.0%
CTGTTTGAGCCAACAATTAT+TGG + chr3_3:87935736-87935755 Msa0481620:three_prime_UTR 35.0%
TGTTGTAGCTAAATTCCGTT+TGG + chr3_3:87935768-87935787 Msa0481620:three_prime_UTR 35.0%
GGAAGAATTAGTTATTGGCA+TGG + chr3_3:87935817-87935836 Msa0481620:three_prime_UTR 35.0%
TTATAATCAGTGTAAGCGTG+TGG + chr3_3:87935890-87935909 Msa0481620:three_prime_UTR 35.0%
TATAATCAGTGTAAGCGTGT+GGG + chr3_3:87935891-87935910 Msa0481620:three_prime_UTR 35.0%
AGACTTAAATAGGTCTCCTA+CGG + chr3_3:87936003-87936022 Msa0481620:three_prime_UTR 35.0%
! TGATATTAGAGCATCTCCAA+TGG + chr3_3:87936030-87936049 Msa0481620:three_prime_UTR 35.0%
! GATATTAGAGCATCTCCAAT+GGG + chr3_3:87936031-87936050 Msa0481620:three_prime_UTR 35.0%
! ATATTAGAGCATCTCCAATG+GGG + chr3_3:87936032-87936051 Msa0481620:three_prime_UTR 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG - chr3_3:87936094-87936113 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG - chr3_3:87936095-87936114 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG - chr3_3:87936098-87936117 None:intergenic 35.0%
GAAAAATTGAGTTCCCGTTA+AGG + chr3_3:87936107-87936126 Msa0481620:three_prime_UTR 35.0%
ATAATTGTCCGTTCCTTAAC+GGG - chr3_3:87936123-87936142 None:intergenic 35.0%
AGATCAGTGTAAGGTAACAC+TGG + chr3_3:87933356-87933375 Msa0481620:CDS 40.0%
TCAGACAATGATTCCCTCAA+TGG - chr3_3:87933534-87933553 None:intergenic 40.0%
GTCGATATACCCGACAATAA+CGG + chr3_3:87933560-87933579 Msa0481620:CDS 40.0%
TCGATATACCCGACAATAAC+GGG + chr3_3:87933561-87933580 Msa0481620:CDS 40.0%
! GTACTGGTAATTGGGAAGTT+AGG + chr3_3:87933616-87933635 Msa0481620:CDS 40.0%
GAAGTTAGGTGTAATGATGC+TGG + chr3_3:87933630-87933649 Msa0481620:CDS 40.0%
! TGCTGGTGTTAGAGTCATAA+AGG + chr3_3:87933647-87933666 Msa0481620:CDS 40.0%
TAAAAGGTGACCATGTGCTA+GGG - chr3_3:87933767-87933786 None:intergenic 40.0%
!!! CCTTTTTGGGATATGCATGT+TGG - chr3_3:87933966-87933985 None:intergenic 40.0%
CCAACATGCATATCCCAAAA+AGG + chr3_3:87933963-87933982 Msa0481620:intron 40.0%
TGCATATCCCAAAAAGGGAT+TGG + chr3_3:87933969-87933988 Msa0481620:intron 40.0%
! AGAGGATCCAATCCCTTTTT+GGG - chr3_3:87933979-87933998 None:intergenic 40.0%
! AAGAGGATCCAATCCCTTTT+TGG - chr3_3:87933980-87933999 None:intergenic 40.0%
TATACACGAGAGGGAAGAAA+AGG - chr3_3:87934352-87934371 None:intergenic 40.0%
TTCCAAGTTTCCTCCATTTG+AGG + chr3_3:87934483-87934502 Msa0481620:intron 40.0%
AATTAGTGGTACGGGTGATT+TGG + chr3_3:87934713-87934732 Msa0481620:intron 40.0%
AAAGAAGGTGGTGTAGCAAT+AGG + chr3_3:87934793-87934812 Msa0481620:CDS 40.0%
!! AAGAAAGGTGGGTTGGAAAT+GGG - chr3_3:87934901-87934920 None:intergenic 40.0%
TGATTGGAGTGAAGAAAGGT+GGG - chr3_3:87934912-87934931 None:intergenic 40.0%
TTGATTGGAGTGAAGAAAGG+TGG - chr3_3:87934913-87934932 None:intergenic 40.0%
!! GGTGAAGAGGTAGTATTGAT+TGG - chr3_3:87934928-87934947 None:intergenic 40.0%
! GGAATGTTGTTGGTTAGGAT+TGG - chr3_3:87934949-87934968 None:intergenic 40.0%
!! GGTAATGGTCTGTGGTTTTA+GGG - chr3_3:87934980-87934999 None:intergenic 40.0%
!! AGGTAATGGTCTGTGGTTTT+AGG - chr3_3:87934981-87935000 None:intergenic 40.0%
TGTGGCTATGTTTGATGAAG+AGG - chr3_3:87935001-87935020 None:intergenic 40.0%
TGAGAATTTGAAAGTGGCTG+TGG - chr3_3:87935019-87935038 None:intergenic 40.0%
! ACTTCCTCTCAGCTCTATTT+TGG + chr3_3:87935106-87935125 Msa0481620:CDS 40.0%
ATAAAACCATCACTCCCAAC+TGG + chr3_3:87935210-87935229 Msa0481620:CDS 40.0%
AAATATCCAGTTGGGAGTGA+TGG - chr3_3:87935219-87935238 None:intergenic 40.0%
! TCACTCCCAACTGGATATTT+TGG + chr3_3:87935219-87935238 Msa0481620:CDS 40.0%
GCGTTTCCAAAATATCCAGT+TGG - chr3_3:87935228-87935247 None:intergenic 40.0%
TGAGTCACAAAAGGAAACTG+AGG + chr3_3:87935380-87935399 Msa0481620:CDS 40.0%
TCACAAAAGGAAACTGAGGA+AGG + chr3_3:87935384-87935403 Msa0481620:CDS 40.0%
CACAAAAGGAAACTGAGGAA+GGG + chr3_3:87935385-87935404 Msa0481620:CDS 40.0%
GAAACTGAGGAAGGGAAATT+TGG + chr3_3:87935393-87935412 Msa0481620:CDS 40.0%
GGAACACCTAAATGCATGTA+TGG + chr3_3:87935414-87935433 Msa0481620:CDS 40.0%
! AACTTTTGTCTGCATGGAAG+AGG + chr3_3:87935446-87935465 Msa0481620:CDS 40.0%
ATAGTGATGCCTTCTTCAGA+TGG + chr3_3:87935570-87935589 Msa0481620:CDS 40.0%
ATGTTGAAGGAGGAAGAACT+TGG + chr3_3:87935618-87935637 Msa0481620:CDS 40.0%
TTGAGCCAACAATTATTGGC+AGG + chr3_3:87935740-87935759 Msa0481620:three_prime_UTR 40.0%
TGAGCCAACAATTATTGGCA+GGG + chr3_3:87935741-87935760 Msa0481620:three_prime_UTR 40.0%
ACTACCCTGCCAATAATTGT+TGG - chr3_3:87935748-87935767 None:intergenic 40.0%
ATTAGTTATTGGCATGGCAG+TGG + chr3_3:87935823-87935842 Msa0481620:three_prime_UTR 40.0%
TTTAAGTCTCCTACCGGAAA+CGG - chr3_3:87935992-87936011 None:intergenic 40.0%
TTCCGGTAGGAGACTTAAAT+AGG + chr3_3:87935993-87936012 Msa0481620:three_prime_UTR 40.0%
GACCTATTTAAGTCTCCTAC+CGG - chr3_3:87935998-87936017 None:intergenic 40.0%
TTAAATAGGTCTCCTACGGT+AGG + chr3_3:87936007-87936026 Msa0481620:three_prime_UTR 40.0%
! TATTAGAGCATCTCCAATGG+GGG + chr3_3:87936033-87936052 Msa0481620:three_prime_UTR 40.0%
ATTGAGTTCCCGTTAAGGAA+CGG + chr3_3:87936112-87936131 Msa0481620:three_prime_UTR 40.0%
TTAGTTACTCAGGAGAGAGA+GGG - chr3_3:87936153-87936172 None:intergenic 40.0%
TCTCTCTCCTGAGTAACTAA+CGG + chr3_3:87936153-87936172 Msa0481620:three_prime_UTR 40.0%
TAACGGGGACACAAAATGGA+GGG - chr3_3:87933174-87933193 None:intergenic 45.0%
TTAACGGGGACACAAAATGG+AGG - chr3_3:87933175-87933194 None:intergenic 45.0%
GTCAGAGACAGATCAGTGTA+AGG + chr3_3:87933347-87933366 Msa0481620:CDS 45.0%
!! AGGATGGTGGTACTGGTAAT+TGG + chr3_3:87933607-87933626 Msa0481620:CDS 45.0%
!! GGATGGTGGTACTGGTAATT+GGG + chr3_3:87933608-87933627 Msa0481620:CDS 45.0%
TGGCTATCATCTTCTGCTAC+TGG + chr3_3:87933696-87933715 Msa0481620:CDS 45.0%
TTCTGCTACTGGATCTGATG+AGG + chr3_3:87933707-87933726 Msa0481620:CDS 45.0%
ATGAGGCACAGCTTATTGCT+TGG + chr3_3:87933724-87933743 Msa0481620:CDS 45.0%
TGAGGCACAGCTTATTGCTT+GGG + chr3_3:87933725-87933744 Msa0481620:CDS 45.0%
CTAAAAGGTGACCATGTGCT+AGG - chr3_3:87933768-87933787 None:intergenic 45.0%
ATTGGATCCTCTTCCGTGAA+TGG + chr3_3:87933987-87934006 Msa0481620:intron 45.0%
TCACTAGACCTCTCCATTCA+CGG - chr3_3:87934003-87934022 None:intergenic 45.0%
CACCTCAAATGGAGGAAACT+TGG - chr3_3:87934488-87934507 None:intergenic 45.0%
!! AGAAAGGTGGGTTGGAAATG+GGG - chr3_3:87934900-87934919 None:intergenic 45.0%
!! GAAGAAAGGTGGGTTGGAAA+TGG - chr3_3:87934902-87934921 None:intergenic 45.0%
! GTTGGTTAGGATTGGTGAAG+AGG - chr3_3:87934941-87934960 None:intergenic 45.0%
! GATGAAGAGGTAATGGTCTG+TGG - chr3_3:87934988-87935007 None:intergenic 45.0%
AAGTCAAATGGGGTGGCATT+AGG - chr3_3:87935090-87935109 None:intergenic 45.0%
AGCTGAGAGGAAGTCAAATG+GGG - chr3_3:87935100-87935119 None:intergenic 45.0%
GAGCTGAGAGGAAGTCAAAT+GGG - chr3_3:87935101-87935120 None:intergenic 45.0%
AGAGCTGAGAGGAAGTCAAA+TGG - chr3_3:87935102-87935121 None:intergenic 45.0%
GAGTCCAAAATAGAGCTGAG+AGG - chr3_3:87935113-87935132 None:intergenic 45.0%
ACTCGACAAGAAACATGAGC+TGG - chr3_3:87935522-87935541 None:intergenic 45.0%
AGCTCATGTTTCTTGTCGAG+TGG + chr3_3:87935521-87935540 Msa0481620:CDS 45.0%
GCTCATGTTTCTTGTCGAGT+GGG + chr3_3:87935522-87935541 Msa0481620:CDS 45.0%
CTCATGTTTCTTGTCGAGTG+GGG + chr3_3:87935523-87935542 Msa0481620:CDS 45.0%
TGATGCCTTCTTCAGATGGA+GGG + chr3_3:87935574-87935593 Msa0481620:CDS 45.0%
GAGCCAAAGATTATCCTTGC+TGG + chr3_3:87935675-87935694 Msa0481620:CDS 45.0%
CAGCCAGCAAGGATAATCTT+TGG - chr3_3:87935681-87935700 None:intergenic 45.0%
! AGATTATCCTTGCTGGCTGT+AGG + chr3_3:87935682-87935701 Msa0481620:CDS 45.0%
! GATTATCCTTGCTGGCTGTA+GGG + chr3_3:87935683-87935702 Msa0481620:CDS 45.0%
GCTCTAATATCACCTACCGT+AGG - chr3_3:87936022-87936041 None:intergenic 45.0%
! ATTAGAGCATCTCCAATGGG+GGG + chr3_3:87936034-87936053 Msa0481620:three_prime_UTR 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr3_3:87936061-87936080 None:intergenic 45.0%
GTTAGTTACTCAGGAGAGAG+AGG - chr3_3:87936154-87936173 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG + chr3_3:87936154-87936173 Msa0481620:three_prime_UTR 45.0%
AACGGGGACACAAAATGGAG+GGG - chr3_3:87933173-87933192 None:intergenic 50.0%
GTCAAGCAGACCAGTGAGTT+CGG + chr3_3:87933398-87933417 Msa0481620:CDS 50.0%
TCAAGCAGACCAGTGAGTTC+GGG + chr3_3:87933399-87933418 Msa0481620:CDS 50.0%
! GGGTAAGACCCACAAGTTGA+CGG + chr3_3:87933419-87933438 Msa0481620:CDS 50.0%
! GGTAAGACCCACAAGTTGAC+GGG + chr3_3:87933420-87933439 Msa0481620:CDS 50.0%
GTCTACACCCGTCAACTTGT+GGG - chr3_3:87933430-87933449 None:intergenic 50.0%
! AAGTTGACGGGTGTAGACCA+TGG + chr3_3:87933432-87933451 Msa0481620:CDS 50.0%
!! TATACCCGACAATAACGGGC+CGG + chr3_3:87933565-87933584 Msa0481620:CDS 50.0%
ATCCTCTTCCGTGAATGGAG+AGG + chr3_3:87933992-87934011 Msa0481620:intron 50.0%
GCACGAGATTAGATCCTCTC+AGG - chr3_3:87934188-87934207 None:intergenic 50.0%
TGGAGTGAAGAAAGGTGGGT+TGG - chr3_3:87934908-87934927 None:intergenic 50.0%
TGAGAGGAAGTCAAATGGGG+TGG - chr3_3:87935097-87935116 None:intergenic 50.0%
TTCTTGTCGAGTGGGGAATG+TGG + chr3_3:87935530-87935549 Msa0481620:CDS 50.0%
GTGATGCCTTCTTCAGATGG+AGG + chr3_3:87935573-87935592 Msa0481620:CDS 50.0%
GCAAACCCTCCATCTGAAGA+AGG - chr3_3:87935582-87935601 None:intergenic 50.0%
! GTTTTACCCTACAGCCAGCA+AGG - chr3_3:87935692-87935711 None:intergenic 50.0%
!!! CTCATTTTTGGCGCCGTTTC+CGG + chr3_3:87935976-87935995 Msa0481620:three_prime_UTR 50.0%
GTTAAGTAAGGACCCCCCAT+TGG - chr3_3:87936049-87936068 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG + chr3_3:87936050-87936069 Msa0481620:three_prime_UTR 50.0%
TCCAATGGAGGGTCCTTAAC+GGG - chr3_3:87936083-87936102 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG - chr3_3:87936084-87936103 None:intergenic 50.0%
GTGAGACCCGTTAGTTACTC+AGG - chr3_3:87936163-87936182 None:intergenic 50.0%
TGGGTCTTACCCGAACTCAC+TGG - chr3_3:87933411-87933430 None:intergenic 55.0%
GGTCTACACCCGTCAACTTG+TGG - chr3_3:87933431-87933450 None:intergenic 55.0%
CACCATCCTCCTCCTTCTCT+CGG - chr3_3:87933596-87933615 None:intergenic 55.0%
! AAGGAGGAGGATGGTGGTAC+TGG + chr3_3:87933600-87933619 Msa0481620:CDS 55.0%
TGCCTCATGACCCTAGCACA+TGG + chr3_3:87933754-87933773 Msa0481620:CDS 55.0%
GACCATGTGCTAGGGTCATG+AGG - chr3_3:87933759-87933778 None:intergenic 55.0%
GACCTCTCCATTCACGGAAG+AGG - chr3_3:87933997-87934016 None:intergenic 55.0%
TGTCGAGTGGGGAATGTGGA+CGG + chr3_3:87935534-87935553 Msa0481620:CDS 55.0%
!! TTTTTGGCGCCGTTTCCGGT+AGG + chr3_3:87935980-87935999 Msa0481620:three_prime_UTR 55.0%
ACAAGGACCACTCCCCGTTA+AGG + chr3_3:87936067-87936086 Msa0481620:three_prime_UTR 55.0%
CCAATGGAGGGTCCTTAACG+GGG - chr3_3:87936082-87936101 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG + chr3_3:87936082-87936101 Msa0481620:three_prime_UTR 55.0%
CCAACCGGCCCGTTATTGTC+GGG - chr3_3:87933572-87933591 None:intergenic 60.0%
CCCAACCGGCCCGTTATTGT+CGG - chr3_3:87933573-87933592 None:intergenic 60.0%
!! CCGACAATAACGGGCCGGTT+GGG + chr3_3:87933570-87933589 Msa0481620:CDS 60.0%
CGAGAGAAGGAGGAGGATGG+TGG + chr3_3:87933594-87933613 Msa0481620:CDS 60.0%
GGTTGGAAATGGGGCTGTGG+CGG - chr3_3:87934891-87934910 None:intergenic 60.0%
!! GTGGGTTGGAAATGGGGCTG+TGG - chr3_3:87934894-87934913 None:intergenic 60.0%
GTGGGGAATGTGGACGGTGA+AGG + chr3_3:87935540-87935559 Msa0481620:CDS 60.0%
CCCCGTTAAGGACCCTCCAT+TGG + chr3_3:87936079-87936098 Msa0481620:three_prime_UTR 60.0%
!! CCCGACAATAACGGGCCGGT+TGG + chr3_3:87933569-87933588 Msa0481620:CDS 65.0%
CCTCCTTCTCTCGGCCCAAC+CGG - chr3_3:87933587-87933606 None:intergenic 65.0%
GTTGGGCCGAGAGAAGGAGG+AGG + chr3_3:87933587-87933606 Msa0481620:CDS 65.0%
GGCCGAGAGAAGGAGGAGGA+TGG + chr3_3:87933591-87933610 Msa0481620:CDS 65.0%
GGGGCTGTGGCGGTGAGTTT+GGG - chr3_3:87934881-87934900 None:intergenic 65.0%
TGGGGCTGTGGCGGTGAGTT+TGG - chr3_3:87934882-87934901 None:intergenic 65.0%
GGAGGGTCCTTAACGGGGAG+TGG - chr3_3:87936077-87936096 None:intergenic 65.0%
CCGGTTGGGCCGAGAGAAGG+AGG + chr3_3:87933584-87933603 Msa0481620:CDS 70.0%
GGGCCGGTTGGGCCGAGAGA+AGG + chr3_3:87933581-87933600 Msa0481620:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 87933150 87936234 87933150 ID=Msa0481620;Name=Msa0481620
chr3_3 mRNA 87933150 87936234 87933150 ID=Msa0481620-mRNA-1;Parent=Msa0481620;Name=Msa0481620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=195|1|1|1|1|1|2|518|461
chr3_3 exon 87933150 87933794 87933150 ID=Msa0481620-mRNA-1:exon:25528;Parent=Msa0481620-mRNA-1
chr3_3 exon 87934781 87936234 87934781 ID=Msa0481620-mRNA-1:exon:25529;Parent=Msa0481620-mRNA-1
chr3_3 five_prime_UTR 87933150 87933344 87933150 ID=Msa0481620-mRNA-1:five_prime_utr;Parent=Msa0481620-mRNA-1
chr3_3 CDS 87933345 87933794 87933345 ID=Msa0481620-mRNA-1:cds;Parent=Msa0481620-mRNA-1
chr3_3 CDS 87934781 87935716 87934781 ID=Msa0481620-mRNA-1:cds;Parent=Msa0481620-mRNA-1
chr3_3 three_prime_UTR 87935717 87936234 87935717 ID=Msa0481620-mRNA-1:three_prime_utr;Parent=Msa0481620-mRNA-1
Gene Sequence

>Msa0481620

ATGTCAGAGACAGATCAGTGTAAGGTAACACTGGATTCAAAACTAACGGTTGTGTCAAGCAGACCAGTGAGTTCGGGTAAGACCCACAAGTTGACGGGTGTAGACCATGGTATGAGTTATCATACACTGCATTTGATATACTATTACAAAAATGAAGAAAAATGGTTTAGGTCATTTGAATTGGATCCATTGAGGGAATCATTGTCTGAAGTTTTGTCGATATACCCGACAATAACGGGCCGGTTGGGCCGAGAGAAGGAGGAGGATGGTGGTACTGGTAATTGGGAAGTTAGGTGTAATGATGCTGGTGTTAGAGTCATAAAGGCTAATGTGGATAGTACTATTGATGAATGGCTATCATCTTCTGCTACTGGATCTGATGAGGCACAGCTTATTGCTTGGGATGATATGCCTCATGACCCTAGCACATGGTCACCTTTTAGAATTCAGATAAATAGCTTCAAAGAAGGTGGTGTAGCAATAGGACTAAGTTTTAGTCACATGCTTTCTGATTTAACTTTTGCATCATCATTCTTCAAATCATGGACCCAAACTCACCGCCACAGCCCCATTTCCAACCCACCTTTCTTCACTCCAATCAATACTACCTCTTCACCAATCCTAACCAACAACATTCCAAATTCATCCCTAAAACCACAGACCATTACCTCTTCATCAAACATAGCCACAGCCACTTTCAAATTCTCAAGTTCAATCATGAAACATTCCCTCTCCAAAATCCAAAAAAAAAAATGTCCTAATGCCACCCCATTTGACTTCCTCTCAGCTCTATTTTGGACTCGTGTTGCTCACTTGAATCCCAAAGAAATTCATAATCAAACTCACTCTTTATCAATCTGCAGAGACTTCAGAAAGCTAATAAAACCATCACTCCCAACTGGATATTTTGGAAACGCGTTACATTTTTCAAATCTTTCACTAAAAATTGAAGAAATGGAGAATGGTGAATTAGGAAACGTAGCAAGTTTAATTCACACACACTTGAAAGGGGTTACAGATAAAGAAATAAAGTCTTCAATAGAATGGTTTGAGTCACAAAAGGAAACTGAGGAAGGGAAATTTGGAACACCTAAATGCATGTATGGGAAAGAGTTAACTTTTGTCTGCATGGAAGAGGAAGAGACAGCATCATTGTTGTATGAATCAATGTTTTGTGATAGTGAGAAACCAGCTCATGTTTCTTGTCGAGTGGGGAATGTGGACGGTGAAGGTTTGATTATAGTGATGCCTTCTTCAGATGGAGGGTTTGCAAGAACTGTGATAGTAATGTTGAAGGAGGAAGAACTTGGTAAATTATGCAATGATCAAGAAATATTGAAGCTTGAGCCAAAGATTATCCTTGCTGGCTGTAGGGTAAAACGTTGA
Protein sequence

>Msa0481620

MSETDQCKVTLDSKLTVVSSRPVSSGKTHKLTGVDHGMSYHTLHLIYYYKNEEKWFRSFELDPLRESLSEVLSIYPTITGRLGREKEEDGGTGNWEVRCNDAGVRVIKANVDSTIDEWLSSSATGSDEAQLIAWDDMPHDPSTWSPFRIQINSFKEGGVAIGLSFSHMLSDLTFASSFFKSWTQTHRHSPISNPPFFTPINTTSSPILTNNIPNSSLKPQTITSSSNIATATFKFSSSIMKHSLSKIQKKKCPNATPFDFLSALFWTRVAHLNPKEIHNQTHSLSICRDFRKLIKPSLPTGYFGNALHFSNLSLKIEEMENGELGNVASLIHTHLKGVTDKEIKSSIEWFESQKETEEGKFGTPKCMYGKELTFVCMEEEETASLLYESMFCDSEKPAHVSCRVGNVDGEGLIIVMPSSDGGFARTVIVMLKEEELGKLCNDQEILKLEPKIILAGCRVKR*