AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0082340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082340 MtrunA17_Chr1g0195451 98.026 456 9 0 1 456 1 456 0.0 912
Msa0082340 MtrunA17_Chr3g0138841 35.977 353 185 9 105 439 83 412 9.65e-59 202
Msa0082340 MtrunA17_Chr4g0003821 26.404 356 198 10 111 440 6 323 1.59e-19 91.3
Msa0082340 MtrunA17_Chr4g0018641 30.412 194 121 4 119 311 38 218 2.92e-18 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082340 AT2G47590.1 69.444 432 112 5 29 456 32 447 0.0 566
Msa0082340 AT5G24850.1 38.138 333 176 9 110 435 73 382 8.73e-65 219
Msa0082340 AT3G15620.2 27.356 329 212 7 109 429 15 324 6.62e-20 92.4
Msa0082340 AT3G15620.1 27.576 330 210 8 109 429 15 324 1.04e-19 92.4
Msa0082340 AT4G25290.1 28.986 207 122 7 111 311 28 215 5.84e-13 71.6

Find 167 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGTACTTTAAGCTTAT+TGG 0.135446 1_2:+61167442 None:intergenic
TTGATTATGGGGCATTAATT+AGG 0.178036 1_2:+61163233 None:intergenic
GTTGAATTGGCGAAGGAAAT+TGG 0.181084 1_2:-61166996 Msa0082340:CDS
AGAAGCTTCAAGTTTGATTA+TGG 0.192595 1_2:+61163220 None:intergenic
TGATAGTAAAGATGGGATTT+TGG 0.196469 1_2:+61167475 None:intergenic
ATCTATGGGTCCAGAATTTA+TGG 0.205391 1_2:-61163470 Msa0082340:three_prime_UTR
TAGAGATAGAGTTCAGAAAT+TGG 0.229601 1_2:-61166793 Msa0082340:CDS
GAGGATATGCCTTCAAATTA+TGG 0.232389 1_2:-61166822 Msa0082340:CDS
CCTAAGCTACAAGTTTCTTA+TGG 0.234167 1_2:-61163690 Msa0082340:exon
GTTGGTACTTTAAGCTTATT+GGG 0.245968 1_2:+61167443 None:intergenic
AAACAGAATGAAGTCTAATA+AGG 0.253018 1_2:+61163168 None:intergenic
TCAGCCAAACAAGGGGTTTA+AGG 0.253932 1_2:-61165858 Msa0082340:CDS
TGCTATGGAGGGACTTCTTT+AGG 0.263132 1_2:-61165561 Msa0082340:intron
CTCTGGTGGTGTTTGGTTGT+TGG 0.268353 1_2:+61167601 None:intergenic
CAACCAATTAGTTCCAGTTT+TGG 0.285317 1_2:+61165594 None:intergenic
CATCCTCAATTCAAACAAAA+TGG 0.286670 1_2:-61167627 Msa0082340:exon
AGTAGGACGGTGAGGGATTA+AGG 0.295386 1_2:+61167307 None:intergenic
CATCCAAAACTGGAACTAAT+TGG 0.299631 1_2:-61165597 Msa0082340:CDS
CCTCCTGTCATGGAAGAATT+AGG 0.313996 1_2:+61165932 None:intergenic
GGAGGAGAGAGGAGAGAGAA+AGG 0.315575 1_2:+61167510 None:intergenic
TTGAATCGGTTTCGGATCTT+AGG 0.318994 1_2:-61167082 Msa0082340:CDS
TGGGAAGCCGGAGACGGTTT+TGG 0.320562 1_2:-61167018 Msa0082340:CDS
TGAGGCTTTGGATCAACTTA+AGG 0.322436 1_2:-61166754 Msa0082340:CDS
CCATCCTTAAACCCCTTGTT+TGG 0.330178 1_2:+61165854 None:intergenic
TGAGGAAGAGCCATAAATTC+TGG 0.334279 1_2:+61163460 None:intergenic
AAGGAAAACTATTGAGGCTT+TGG 0.339052 1_2:-61166766 Msa0082340:CDS
TGATTATGGGGCATTAATTA+GGG 0.344799 1_2:+61163234 None:intergenic
TTGAATTGGCGAAGGAAATT+GGG 0.347653 1_2:-61166995 Msa0082340:CDS
TGGTGATATTCCTACTTTGA+TGG 0.349316 1_2:-61166703 Msa0082340:CDS
TGAGGATTTGCCGTTTAGTT+TGG 0.357273 1_2:-61166844 Msa0082340:CDS
TCTGGTGGTGTTTGGTTGTT+GGG 0.358189 1_2:+61167602 None:intergenic
TCTCTTTCTCTGGTGGTGTT+TGG 0.362699 1_2:+61167594 None:intergenic
GATTATGGGAAATCTTCATC+TGG 0.364632 1_2:-61167143 Msa0082340:CDS
CTTCTTCCGCCGCTGCTCTT+CGG 0.373965 1_2:-61167280 Msa0082340:CDS
GAGGCTTTGGATCAACTTAA+GGG 0.374049 1_2:-61166753 Msa0082340:CDS
GCAATCACATTATATCAATA+TGG 0.374605 1_2:-61163602 Msa0082340:three_prime_UTR
GAAGCTTCAAGTTTGATTAT+GGG 0.374913 1_2:+61163221 None:intergenic
TGCTCCAGCCACTGCTTGTA+CGG 0.374998 1_2:-61163722 Msa0082340:CDS
TTCGGAGAACCGCCATTGTT+TGG 0.378423 1_2:-61167262 Msa0082340:CDS
AGGTTGAGATTCTCTTTCTC+TGG 0.381169 1_2:+61167584 None:intergenic
TCCTCAATAACACGATACTT+TGG 0.396953 1_2:-61163443 Msa0082340:three_prime_UTR
GGATCTTAGGAAGAATCTTA+AGG 0.401605 1_2:-61167069 Msa0082340:CDS
GGGGCACAAGATAGTATATA+TGG 0.403980 1_2:-61165833 Msa0082340:CDS
TCATCTGGGTTTGATAAAAC+AGG 0.408572 1_2:-61167128 Msa0082340:CDS
CCTCAATAACACGATACTTT+GGG 0.412537 1_2:-61163442 Msa0082340:three_prime_UTR
TTTGTTGGAAGGGGAAGAAT+GGG 0.416847 1_2:+61167379 None:intergenic
GATGGTGGCTCATCCAAAAC+TGG 0.418194 1_2:-61165607 Msa0082340:CDS
GGAAGGGGAAGAATGGGTTT+TGG 0.423682 1_2:+61167385 None:intergenic
GGTGGTGGAAGCGGTGGTTC+CGG 0.424545 1_2:+61167551 None:intergenic
AGATGGAGGAGAAGATTGAA+GGG 0.424911 1_2:-61166926 Msa0082340:CDS
ATAAACAGGTAAAACAGAAA+TGG 0.427712 1_2:+61167181 None:intergenic
CCATAAGAAACTTGTAGCTT+AGG 0.428628 1_2:+61163690 None:intergenic
CGGATCTTGTGGTGAGAGTT+GGG 0.432143 1_2:-61167037 Msa0082340:CDS
GCAGGATCAAAACAATAAAC+AGG 0.432831 1_2:+61167167 None:intergenic
CTAAAACCACCATAATTTGA+AGG 0.437906 1_2:+61166813 None:intergenic
CGAAGAGCAGCGGCGGAAGA+AGG 0.444187 1_2:+61167281 None:intergenic
AACAGAATGAAGTCTAATAA+GGG 0.444502 1_2:+61163169 None:intergenic
GGAAGCGGTGGTTCCGGTGA+GGG 0.445826 1_2:+61167557 None:intergenic
CCAAACAAGGGGTTTAAGGA+TGG 0.450067 1_2:-61165854 Msa0082340:CDS
AGGAGAGTGGTGATTTGAGA+GGG 0.452904 1_2:+61167327 None:intergenic
TTCAATGTGTGTGGTTTGGA+TGG 0.461131 1_2:+61167762 None:intergenic
ATTCCTACTTTGATGGACCT+TGG 0.462040 1_2:-61166696 Msa0082340:CDS
GAGTTCAGAAATTGGAGATA+AGG 0.462142 1_2:-61166785 Msa0082340:CDS
GAAGATGAAGGAGGAGAATG+TGG 0.462554 1_2:-61166904 Msa0082340:CDS
ACTTTAAGCTTATTGGGTGG+TGG 0.462910 1_2:+61167449 None:intergenic
GCTCCAGCCACTGCTTGTAC+GGG 0.464062 1_2:-61163721 Msa0082340:CDS
GAGGAGAGAGGAGAGAGAAA+GGG 0.465168 1_2:+61167511 None:intergenic
GGCATATCCTCCAAACTAAA+CGG 0.469033 1_2:+61166834 None:intergenic
TAGTTCTACTAAGAAACAAC+TGG 0.469217 1_2:-61163749 Msa0082340:CDS
GCAAGTGACGGTGGTGGAAG+CGG 0.469751 1_2:+61167542 None:intergenic
AATTTCTCCATGGTTGGCAA+TGG 0.472113 1_2:-61165792 Msa0082340:CDS
ATTTCTCCATGGTTGGCAAT+GGG 0.474742 1_2:-61165791 Msa0082340:CDS
AAGGAGAGTGGTGATTTGAG+AGG 0.475617 1_2:+61167326 None:intergenic
AAGATGGAGGAGAAGATTGA+AGG 0.477202 1_2:-61166927 Msa0082340:CDS
ATGCAAAATTTCTCCATGGT+TGG 0.479998 1_2:-61165798 Msa0082340:CDS
TTCTCATGATGAGGTGAAGA+TGG 0.481763 1_2:-61166943 Msa0082340:CDS
ACAGAGGCTTAAAAGATTTG+CGG 0.483489 1_2:-61165894 Msa0082340:CDS
GGATTTGCCGTTTAGTTTGG+AGG 0.485893 1_2:-61166841 Msa0082340:CDS
AATTCAACCAAAACCGTCTC+CGG 0.486723 1_2:+61167011 None:intergenic
TCGGATCTTGTGGTGAGAGT+TGG 0.490430 1_2:-61167038 Msa0082340:CDS
GAAGATTGAAGGGAAGATGA+AGG 0.498110 1_2:-61166916 Msa0082340:CDS
TTGGAATAAAGGGAGGAGAG+AGG 0.500643 1_2:+61167499 None:intergenic
AGGAAGAATCTTAAGGCAAG+AGG 0.500841 1_2:-61167062 Msa0082340:CDS
GGTGGTGGTGATAGTAAAGA+TGG 0.501732 1_2:+61167467 None:intergenic
TTCAGTCTCCCCTCCTGTCA+TGG 0.502535 1_2:+61165922 None:intergenic
AGAGAAGCAAGTGACGGTGG+TGG 0.502601 1_2:+61167536 None:intergenic
ATGAGTGAGTGATGAAGCTT+GGG 0.503400 1_2:+61167421 None:intergenic
GGTTGATGTTTGAGTTGCTA+TGG 0.503481 1_2:-61165576 Msa0082340:CDS
TATCTGTTACCTACTACCAC+TGG 0.503676 1_2:+61167656 None:intergenic
CATGAACACGAAGATCATTA+CGG 0.504071 1_2:+61167237 None:intergenic
GATGAGTGAGTGATGAAGCT+TGG 0.512379 1_2:+61167420 None:intergenic
GGAGATAAGGAAAACTATTG+AGG 0.512912 1_2:-61166772 Msa0082340:CDS
TTGAGATTCTCTTTCTCTGG+TGG 0.519022 1_2:+61167587 None:intergenic
AAGCTTCAAGTTTGATTATG+GGG 0.519642 1_2:+61163222 None:intergenic
CCCAAAGTATCGTGTTATTG+AGG 0.520052 1_2:+61163442 None:intergenic
TTAAGCTTATTGGGTGGTGG+TGG 0.520554 1_2:+61167452 None:intergenic
CAGCTCATCAAACATTGCGC+GGG 0.522820 1_2:+61165757 None:intergenic
TGTGGTGAGAGTTGGGAAGC+CGG 0.527613 1_2:-61167030 Msa0082340:CDS
CGGTGAGGGATTAAGGAGAG+TGG 0.528589 1_2:+61167314 None:intergenic
GGCAAGAGGGTCGGATCTTG+TGG 0.529684 1_2:-61167048 Msa0082340:CDS
TCTCGTGGTGATGTTCAGCT+TGG 0.531237 1_2:-61166723 Msa0082340:CDS
TCCATCTGCCACAATGTCAC+AGG 0.531575 1_2:-61166667 Msa0082340:intron
AGACCAAGGTCCATCAAAGT+AGG 0.537251 1_2:+61166693 None:intergenic
AAGTACTTTGTATCATGTTG+AGG 0.538060 1_2:-61166862 Msa0082340:CDS
GTGCCTAATTCTTCCATGAC+AGG 0.539757 1_2:-61165935 Msa0082340:CDS
ATTATGGGAAATCTTCATCT+GGG 0.540323 1_2:-61167142 Msa0082340:CDS
ACCTGTGACATTGTGGCAGA+TGG 0.543053 1_2:+61166666 None:intergenic
TTTCATGCAAAATTTCTCCA+TGG 0.544798 1_2:-61165802 Msa0082340:CDS
GAAGATTTCCCATAATCAGC+AGG 0.545258 1_2:+61167149 None:intergenic
GCACCCGTACAAGCAGTGGC+TGG 0.547932 1_2:+61163718 None:intergenic
CTCATCAAACATTGCGCGGG+GGG 0.548029 1_2:+61165760 None:intergenic
TCTCAACCTCACACCCTCAC+CGG 0.549207 1_2:-61167570 Msa0082340:CDS
CAAACAAGGGGTTTAAGGAT+GGG 0.554665 1_2:-61165853 Msa0082340:CDS
AGGCATCCCATTGCCAACCA+TGG 0.557353 1_2:+61165785 None:intergenic
TGGAAGCGGTGGTTCCGGTG+AGG 0.557500 1_2:+61167556 None:intergenic
GAAGAGCAGCGGCGGAAGAA+GGG 0.560143 1_2:+61167282 None:intergenic
GCGGCGGAAGAAGGGTCAGT+AGG 0.561786 1_2:+61167290 None:intergenic
GTGGTTCCGGTGAGGGTGTG+AGG 0.562859 1_2:+61167564 None:intergenic
AAACAAGGGGTTTAAGGATG+GGG 0.564416 1_2:-61165852 Msa0082340:CDS
TAAGTTGTGAAGAATAAAGG+AGG 0.568916 1_2:-61163335 Msa0082340:three_prime_UTR
TGAATTGGCGAAGGAAATTG+GGG 0.569351 1_2:-61166994 Msa0082340:CDS
GTGTGAAGCTCAGCCAAACA+AGG 0.570307 1_2:-61165867 Msa0082340:CDS
GTCATGGAAGAATTAGGCAC+TGG 0.572317 1_2:+61165938 None:intergenic
AAGCGCACCCGTACAAGCAG+TGG 0.573556 1_2:+61163714 None:intergenic
AGTGACGGTGGTGGAAGCGG+TGG 0.577411 1_2:+61167545 None:intergenic
TCAGCTCATCAAACATTGCG+CGG 0.578227 1_2:+61165756 None:intergenic
GCTGAACATCACCACGAGAA+GGG 0.578396 1_2:+61166727 None:intergenic
GAGAGTTGGGAAGCCGGAGA+CGG 0.579515 1_2:-61167024 Msa0082340:CDS
AGCTGAAGAAAACTGCAAGC+AGG 0.580374 1_2:-61165739 Msa0082340:intron
GAAGGGTCAGTAGGACGGTG+AGG 0.584070 1_2:+61167299 None:intergenic
GATGTTTGAGTTGCTATGGA+GGG 0.589463 1_2:-61165572 Msa0082340:CDS
GATTGAAGGGAAGATGAAGG+AGG 0.593083 1_2:-61166913 Msa0082340:CDS
TGATGTTTGAGTTGCTATGG+AGG 0.595257 1_2:-61165573 Msa0082340:CDS
TGCTGTGTATTGTCATAGAG+AGG 0.595822 1_2:-61166967 Msa0082340:CDS
AGCTCATCAAACATTGCGCG+GGG 0.598803 1_2:+61165758 None:intergenic
GGCGGTTCTCCGAAGAGCAG+CGG 0.599963 1_2:+61167271 None:intergenic
ACATACAACAGAACTTGTGA+AGG 0.600612 1_2:+61163631 None:intergenic
CGGAAGAAGGGTCAGTAGGA+CGG 0.602620 1_2:+61167294 None:intergenic
GATATGCCTTCAAATTATGG+TGG 0.605212 1_2:-61166819 Msa0082340:CDS
GGTACTTTAAGCTTATTGGG+TGG 0.607149 1_2:+61167446 None:intergenic
AGCTGAACATCACCACGAGA+AGG 0.608329 1_2:+61166726 None:intergenic
TAATTCTTCCATGACAGGAG+GGG 0.608540 1_2:-61165930 Msa0082340:CDS
AAGGGTCAGTAGGACGGTGA+GGG 0.610539 1_2:+61167300 None:intergenic
ATAGATCTAGTTAGAAAAGA+CGG 0.611599 1_2:+61163487 None:intergenic
GAATCTTAAGGCAAGAGGGT+CGG 0.615487 1_2:-61167057 Msa0082340:CDS
TAGAGAGGTTTCTCATGATG+AGG 0.616362 1_2:-61166952 Msa0082340:CDS
GATGAAGGAGGAGAATGTGG+AGG 0.618082 1_2:-61166901 Msa0082340:CDS
CTAATTCTTCCATGACAGGA+GGG 0.619336 1_2:-61165931 Msa0082340:CDS
GGTTCTCCGAAGAGCAGCGG+CGG 0.624520 1_2:+61167274 None:intergenic
GTGGTGGTGATAGTAAAGAT+GGG 0.627435 1_2:+61167468 None:intergenic
CTTAAGGGTCTCCCTTCTCG+TGG 0.627746 1_2:-61166738 Msa0082340:CDS
CCTAATTCTTCCATGACAGG+AGG 0.628725 1_2:-61165932 Msa0082340:CDS
GAGAGAGAAGCAAGTGACGG+TGG 0.630808 1_2:+61167533 None:intergenic
TGTGAAGCTCAGCCAAACAA+GGG 0.637459 1_2:-61165866 Msa0082340:CDS
ATCATTACGGAACCAAACAA+TGG 0.638151 1_2:+61167250 None:intergenic
CATACAACAGAACTTGTGAA+GGG 0.641338 1_2:+61163632 None:intergenic
GGAAGAATCTTAAGGCAAGA+GGG 0.642727 1_2:-61167061 Msa0082340:CDS
AGGGAGAGAGAAGCAAGTGA+CGG 0.649765 1_2:+61167530 None:intergenic
TGGCAGATGGATTAAGACCA+AGG 0.660136 1_2:+61166679 None:intergenic
TCATGATGAGGTGAAGATGG+AGG 0.660818 1_2:-61166940 Msa0082340:CDS
ATACAACAGAACTTGTGAAG+GGG 0.661152 1_2:+61163633 None:intergenic
GTGAGTGATGAAGCTTGGGT+TGG 0.675328 1_2:+61167425 None:intergenic
ATTGGCGAAGGAAATTGGGG+CGG 0.682178 1_2:-61166991 Msa0082340:CDS
GTGAAGCTCAGCCAAACAAG+GGG 0.683998 1_2:-61165865 Msa0082340:CDS
GGGAGACTGAAGCACTACAG+AGG 0.688139 1_2:-61165910 Msa0082340:CDS
GCTCATCAAACATTGCGCGG+GGG 0.698836 1_2:+61165759 None:intergenic
ATTACGGAACCAAACAATGG+CGG 0.734414 1_2:+61167253 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTGTTTAAAAATATT+AGG - chr1_2:61165296-61165315 Msa0082340:intron 10.0%
!!! AAAGTTATAATTTTCTAATT+AGG + chr1_2:61165564-61165583 None:intergenic 10.0%
!!! AATACATTTTAAAAAAGTTA+TGG + chr1_2:61165685-61165704 None:intergenic 10.0%
!! TAAAATGTATTTAACTAAAA+AGG - chr1_2:61165694-61165713 Msa0082340:intron 10.0%
!!! TTGTAATCATAATATTTTCA+TGG - chr1_2:61164436-61164455 Msa0082340:intron 15.0%
!! TAAGAAATATTATTATGATG+CGG - chr1_2:61166858-61166877 Msa0082340:CDS 15.0%
!! TGTTAAAATCTAATTTGATT+AGG + chr1_2:61167075-61167094 None:intergenic 15.0%
!!! AAGCTTTTTACATTATTTTT+TGG - chr1_2:61167419-61167438 Msa0082340:CDS 15.0%
!!! TTTTTACATTATTTTTTGGA+TGG - chr1_2:61167423-61167442 Msa0082340:CDS 15.0%
!!! TGAAAAAGAAGATTTTTTGA+AGG + chr1_2:61163646-61163665 None:intergenic 20.0%
!!! TCTTTGATTAGATTTTATGT+TGG - chr1_2:61164630-61164649 Msa0082340:intron 20.0%
!!! TTTTAAACAGAAAAACATCT+GGG + chr1_2:61165291-61165310 None:intergenic 20.0%
!!! TTTTTAAACAGAAAAACATC+TGG + chr1_2:61165292-61165311 None:intergenic 20.0%
!!! TTTTCTTTTCCCAATATATA+CGG - chr1_2:61165506-61165525 Msa0082340:intron 20.0%
!! TTTATCATAGTAGTTTATGA+TGG - chr1_2:61165601-61165620 Msa0082340:CDS 20.0%
!! TTATCATAGTAGTTTATGAT+GGG - chr1_2:61165602-61165621 Msa0082340:CDS 20.0%
!!! ACATGTTTAAATCTTTAAAG+AGG + chr1_2:61165869-61165888 None:intergenic 20.0%
!! CGGTTAATTTATTTAACAAT+AGG - chr1_2:61165911-61165930 Msa0082340:CDS 20.0%
!! ACATTATTACAAACTAAACT+AGG - chr1_2:61165952-61165971 Msa0082340:intron 20.0%
!!! TTTTGAGTTTTCATTGTATT+AGG - chr1_2:61166368-61166387 Msa0082340:intron 20.0%
!! AAAAAGAAAAAAAAAGCCAA+CGG + chr1_2:61166449-61166468 None:intergenic 20.0%
!! AGAACAAAAAAAAGTAGAAA+AGG + chr1_2:61166491-61166510 None:intergenic 20.0%
!!! TCATTACTTTTAAGATTTGA+TGG - chr1_2:61166656-61166675 Msa0082340:intron 20.0%
!!! CATTACTTTTAAGATTTGAT+GGG - chr1_2:61166657-61166676 Msa0082340:intron 20.0%
!! AAAAGATTTAAATGGTAAGT+AGG - chr1_2:61166691-61166710 Msa0082340:CDS 20.0%
!! AAAGATTTAAATGGTAAGTA+GGG - chr1_2:61166692-61166711 Msa0082340:CDS 20.0%
!! AGATATAGAGAAAATATGAT+CGG + chr1_2:61166817-61166836 None:intergenic 20.0%
!!! ATATTTTTTGGTAATAAACC+TGG + chr1_2:61167230-61167249 None:intergenic 20.0%
!!! CTTAGTAGAACTATATTTTT+TGG + chr1_2:61167242-61167261 None:intergenic 20.0%
!!! TTTTAAGTTGTGAAGAATAA+AGG - chr1_2:61167660-61167679 Msa0082340:five_prime_UTR 20.0%
!!! TGTAATCATCACTTTTTTCA+GGG + chr1_2:61163205-61163224 None:intergenic 25.0%
!!! ACAGTTAACAACCTTATTTT+TGG - chr1_2:61163286-61163305 Msa0082340:intron 25.0%
! AGATAGAGTAACCAAAAATA+AGG + chr1_2:61163300-61163319 None:intergenic 25.0%
!!! AGATTTTTTGAAGGTTTTGT+TGG + chr1_2:61163637-61163656 None:intergenic 25.0%
! ATAAACAGGTAAAACAGAAA+TGG + chr1_2:61163820-61163839 None:intergenic 25.0%
!!! TGCTAGTTTTTTGATTGAAT+CGG - chr1_2:61163902-61163921 Msa0082340:intron 25.0%
!!! TTTTTTGATTGAATCGGTTT+CGG - chr1_2:61163908-61163927 Msa0082340:intron 25.0%
!!! GTTATGGAATTCAGTTTTAA+TGG - chr1_2:61164670-61164689 Msa0082340:intron 25.0%
! CATCAACAATGAATCTATAT+TGG - chr1_2:61165012-61165031 Msa0082340:intron 25.0%
!! AGAAATTTTGCATGAAAAGT+TGG + chr1_2:61165193-61165212 None:intergenic 25.0%
!! TAGTTTTCTCCGTATATATT+GGG + chr1_2:61165518-61165537 None:intergenic 25.0%
! CCTAATTTAATGAATAAGTC+TGG + chr1_2:61165662-61165681 None:intergenic 25.0%
! CCAGACTTATTCATTAAATT+AGG - chr1_2:61165659-61165678 Msa0082340:intron 25.0%
! TCATATTTACATGAACTAAC+TGG + chr1_2:61165762-61165781 None:intergenic 25.0%
! ATTCAAAAACCATACTAGAA+AGG + chr1_2:61166637-61166656 None:intergenic 25.0%
! CTGTCTGAAAAAGATTTAAA+TGG - chr1_2:61166683-61166702 Msa0082340:CDS 25.0%
! ATTATTATGATGCGGTAAAA+TGG - chr1_2:61166866-61166885 Msa0082340:CDS 25.0%
! TTATTATGATGCGGTAAAAT+GGG - chr1_2:61166867-61166886 Msa0082340:CDS 25.0%
!! GTGTTTAGTGATAAAAGTTT+TGG + chr1_2:61167168-61167187 None:intergenic 25.0%
! GCAATCACATTATATCAATA+TGG - chr1_2:61167396-61167415 Msa0082340:CDS 25.0%
!!! TTCAGAACAACACTTTTTTA+AGG + chr1_2:61167470-61167489 None:intergenic 25.0%
! ATAGATCTAGTTAGAAAAGA+CGG + chr1_2:61167514-61167533 None:intergenic 25.0%
!! TCTTTTCTAACTAGATCTAT+GGG - chr1_2:61167514-61167533 Msa0082340:CDS 25.0%
! TTGTTCATCTTACTATGTTA+TGG - chr1_2:61167701-61167720 Msa0082340:five_prime_UTR 25.0%
! GAACAAATGAGCATTAATTA+GGG + chr1_2:61167727-61167746 None:intergenic 25.0%
! TGAACAAATGAGCATTAATT+AGG + chr1_2:61167728-61167747 None:intergenic 25.0%
! TTGTTCATCTTACTATGTTA+TGG - chr1_2:61167701-61167720 Msa0082340:five_prime_UTR 25.0%
! AACAGAATGAAGTCTAATAA+GGG + chr1_2:61167832-61167851 None:intergenic 25.0%
!!! GTGTAATCATCACTTTTTTC+AGG + chr1_2:61163206-61163225 None:intergenic 30.0%
CATCCTCAATTCAAACAAAA+TGG - chr1_2:61163371-61163390 Msa0082340:three_prime_UTR 30.0%
!! GTTCCATTTTGTTTGAATTG+AGG + chr1_2:61163377-61163396 None:intergenic 30.0%
! GATAGTAAAGATGGGATTTT+GGG + chr1_2:61163525-61163544 None:intergenic 30.0%
! TGATAGTAAAGATGGGATTT+TGG + chr1_2:61163526-61163545 None:intergenic 30.0%
GTTGGTACTTTAAGCTTATT+GGG + chr1_2:61163558-61163577 None:intergenic 30.0%
!!! TTTTGAAGGTTTTGTTGGAA+GGG + chr1_2:61163632-61163651 None:intergenic 30.0%
!!! TTTTTGAAGGTTTTGTTGGA+AGG + chr1_2:61163633-61163652 None:intergenic 30.0%
ATTATGGGAAATCTTCATCT+GGG - chr1_2:61163856-61163875 Msa0082340:intron 30.0%
ATCAAAAAACTAGCACGATA+AGG + chr1_2:61163897-61163916 None:intergenic 30.0%
AAGTACTTTGTATCATGTTG+AGG - chr1_2:61164136-61164155 Msa0082340:intron 30.0%
CTAAAACCACCATAATTTGA+AGG + chr1_2:61164188-61164207 None:intergenic 30.0%
TAGAGATAGAGTTCAGAAAT+TGG - chr1_2:61164205-61164224 Msa0082340:intron 30.0%
!!! TTGTTTGTTTTATGCTGCAT+TGG - chr1_2:61164393-61164412 Msa0082340:intron 30.0%
!! ATACCTTTTATGAGAAGTGT+TGG - chr1_2:61164555-61164574 Msa0082340:intron 30.0%
TTAGAAATGATCGAGTGTTA+TGG - chr1_2:61164654-61164673 Msa0082340:intron 30.0%
!! ATGGAATTCAGTTTTAATGG+AGG - chr1_2:61164673-61164692 Msa0082340:intron 30.0%
!! TGGAATTCAGTTTTAATGGA+GGG - chr1_2:61164674-61164693 Msa0082340:intron 30.0%
TAATAGGTAGCCCAATATAT+CGG + chr1_2:61164779-61164798 None:intergenic 30.0%
CATTACTCAATCAAGCTAAT+AGG + chr1_2:61164795-61164814 None:intergenic 30.0%
GATATTAGTATACTACCTTG+AGG - chr1_2:61164821-61164840 Msa0082340:intron 30.0%
! TGAATCTGTTGATGAAAAGT+AGG - chr1_2:61164846-61164865 Msa0082340:intron 30.0%
TGATGAAAAGTAGGATTACT+AGG - chr1_2:61164855-61164874 Msa0082340:intron 30.0%
TTCTAGCAATGCTTGAAAAA+TGG + chr1_2:61164985-61165004 None:intergenic 30.0%
TTTCATGCAAAATTTCTCCA+TGG - chr1_2:61165196-61165215 Msa0082340:intron 30.0%
AATTCATCAGTGAGTATTCA+TGG + chr1_2:61165330-61165349 None:intergenic 30.0%
!! ATCATTTTTGCTTGATGAAG+CGG + chr1_2:61165374-61165393 None:intergenic 30.0%
!! CTAGTTTTCTCCGTATATAT+TGG + chr1_2:61165519-61165538 None:intergenic 30.0%
TACAAACTAAACTAGGCTTT+CGG - chr1_2:61165959-61165978 Msa0082340:intron 30.0%
!! CTAGCTTGTTTATCTAGTAT+AGG + chr1_2:61166009-61166028 None:intergenic 30.0%
ACGAAAAGGAAATTCTGTAA+TGG + chr1_2:61166274-61166293 None:intergenic 30.0%
AAACTCAAAACCAGAAAGTT+TGG + chr1_2:61166358-61166377 None:intergenic 30.0%
!! TACTGTTTTGTTGCCTTTTT+TGG - chr1_2:61166397-61166416 Msa0082340:intron 30.0%
!! ACTGTTTTGTTGCCTTTTTT+GGG - chr1_2:61166398-61166417 Msa0082340:intron 30.0%
! AACGATTAACCTTTCTAGTA+TGG - chr1_2:61166625-61166644 Msa0082340:intron 30.0%
TTAAATGGTAAGTAGGGATA+TGG - chr1_2:61166698-61166717 Msa0082340:CDS 30.0%
! GTTATTGTTCTTGGTAGTAT+AGG - chr1_2:61166748-61166767 Msa0082340:CDS 30.0%
TATTATGATGCGGTAAAATG+GGG - chr1_2:61166868-61166887 Msa0082340:CDS 30.0%
GTAAAATGGGGAAATATGAA+CGG - chr1_2:61166880-61166899 Msa0082340:CDS 30.0%
TCTCTTCCTTCTTATTGTTA+CGG - chr1_2:61166973-61166992 Msa0082340:CDS 30.0%
CTAAATCCGTAACAATAAGA+AGG + chr1_2:61166982-61167001 None:intergenic 30.0%
!! ATTGTTACGGATTTAGTTCT+AGG - chr1_2:61166986-61167005 Msa0082340:CDS 30.0%
!! TTGTTACGGATTTAGTTCTA+GGG - chr1_2:61166987-61167006 Msa0082340:CDS 30.0%
!! TAGTTCTAGGGAAAATTGAT+TGG - chr1_2:61166999-61167018 Msa0082340:CDS 30.0%
!! AGTTCTAGGGAAAATTGATT+GGG - chr1_2:61167000-61167019 Msa0082340:CDS 30.0%
AACTTCACAGTTGAATTTGT+GGG + chr1_2:61167144-61167163 None:intergenic 30.0%
AAACTTCACAGTTGAATTTG+TGG + chr1_2:61167145-61167164 None:intergenic 30.0%
! TAGTTCTACTAAGAAACAAC+TGG - chr1_2:61167249-61167268 Msa0082340:CDS 30.0%
! GTCTTTTCTAACTAGATCTA+TGG - chr1_2:61167513-61167532 Msa0082340:CDS 30.0%
TGGGAGAGAAATTTGAAAAA+TGG - chr1_2:61167575-61167594 Msa0082340:CDS 30.0%
GGGAGAGAAATTTGAAAAAT+GGG - chr1_2:61167576-61167595 Msa0082340:CDS 30.0%
TAAGTTGTGAAGAATAAAGG+AGG - chr1_2:61167663-61167682 Msa0082340:five_prime_UTR 30.0%
! TGATTATGGGGCATTAATTA+GGG + chr1_2:61167767-61167786 None:intergenic 30.0%
! TTGATTATGGGGCATTAATT+AGG + chr1_2:61167768-61167787 None:intergenic 30.0%
! AAGCTTCAAGTTTGATTATG+GGG + chr1_2:61167779-61167798 None:intergenic 30.0%
! GAAGCTTCAAGTTTGATTAT+GGG + chr1_2:61167780-61167799 None:intergenic 30.0%
! AGAAGCTTCAAGTTTGATTA+TGG + chr1_2:61167781-61167800 None:intergenic 30.0%
!!! CTTTTTCAATGTGTGTGGTT+TGG + chr1_2:61163243-61163262 None:intergenic 35.0%
!!! ACTGTCTTTTTCAATGTGTG+TGG + chr1_2:61163248-61163267 None:intergenic 35.0%
TCAACATCTCAAAAAACCAG+TGG - chr1_2:61163326-61163345 Msa0082340:three_prime_UTR 35.0%
!!! GGATTTTGGGTTGGAATAAA+GGG + chr1_2:61163512-61163531 None:intergenic 35.0%
! GGTTGGTACTTTAAGCTTAT+TGG + chr1_2:61163559-61163578 None:intergenic 35.0%
!!! TTTGAAGGTTTTGTTGGAAG+GGG + chr1_2:61163631-61163650 None:intergenic 35.0%
ATCATTACGGAACCAAACAA+TGG + chr1_2:61163751-61163770 None:intergenic 35.0%
CATGAACACGAAGATCATTA+CGG + chr1_2:61163764-61163783 None:intergenic 35.0%
GCAGGATCAAAACAATAAAC+AGG + chr1_2:61163834-61163853 None:intergenic 35.0%
!!! TGTTTTGATCCTGCTGATTA+TGG - chr1_2:61163840-61163859 Msa0082340:intron 35.0%
!! GTTTTGATCCTGCTGATTAT+GGG - chr1_2:61163841-61163860 Msa0082340:intron 35.0%
GATTATGGGAAATCTTCATC+TGG - chr1_2:61163855-61163874 Msa0082340:intron 35.0%
TCATCTGGGTTTGATAAAAC+AGG - chr1_2:61163870-61163889 Msa0082340:intron 35.0%
GGATCTTAGGAAGAATCTTA+AGG - chr1_2:61163929-61163948 Msa0082340:intron 35.0%
TTGAATTGGCGAAGGAAATT+GGG - chr1_2:61164003-61164022 Msa0082340:intron 35.0%
GAGGATATGCCTTCAAATTA+TGG - chr1_2:61164176-61164195 Msa0082340:intron 35.0%
GATATGCCTTCAAATTATGG+TGG - chr1_2:61164179-61164198 Msa0082340:intron 35.0%
GAGTTCAGAAATTGGAGATA+AGG - chr1_2:61164213-61164232 Msa0082340:intron 35.0%
GGAGATAAGGAAAACTATTG+AGG - chr1_2:61164226-61164245 Msa0082340:intron 35.0%
AAGGAAAACTATTGAGGCTT+TGG - chr1_2:61164232-61164251 Msa0082340:intron 35.0%
TGGTGATATTCCTACTTTGA+TGG - chr1_2:61164295-61164314 Msa0082340:intron 35.0%
TTACATGTACCAATACGTGT+CGG - chr1_2:61164522-61164541 Msa0082340:intron 35.0%
!! AATTCAGTTTTAATGGAGGG+AGG - chr1_2:61164677-61164696 Msa0082340:intron 35.0%
TAAAAAGCTGTCCTTTCACA+AGG - chr1_2:61164753-61164772 Msa0082340:intron 35.0%
TTTCACAAGGCCGATATATT+GGG - chr1_2:61164766-61164785 Msa0082340:intron 35.0%
ATCAACAGATTCAAACCTCA+AGG + chr1_2:61164839-61164858 None:intergenic 35.0%
ACTTGATAGATATCTGTGTG+TGG - chr1_2:61164900-61164919 Msa0082340:intron 35.0%
CTTGATAGATATCTGTGTGT+GGG - chr1_2:61164901-61164920 Msa0082340:intron 35.0%
GCAATGCTTGAAAAATGGAA+AGG + chr1_2:61164980-61164999 None:intergenic 35.0%
ACAGAGGCTTAAAAGATTTG+CGG - chr1_2:61165104-61165123 Msa0082340:intron 35.0%
ATGCAAAATTTCTCCATGGT+TGG - chr1_2:61165200-61165219 Msa0082340:intron 35.0%
GCTTCATCAAGCAAAAATGA+TGG - chr1_2:61165373-61165392 Msa0082340:intron 35.0%
TCATCAAGCAAAAATGATGG+TGG - chr1_2:61165376-61165395 Msa0082340:intron 35.0%
CATCCAAAACTGGAACTAAT+TGG - chr1_2:61165401-61165420 Msa0082340:intron 35.0%
! CAACCAATTAGTTCCAGTTT+TGG + chr1_2:61165407-61165426 None:intergenic 35.0%
GACTTCTTTAGGTAATGTTC+TGG - chr1_2:61165448-61165467 Msa0082340:intron 35.0%
!! CATGAACTAACTGGTTTGTT+TGG + chr1_2:61165753-61165772 None:intergenic 35.0%
GACTACATGTAGAGTTTAGT+CGG - chr1_2:61165891-61165910 Msa0082340:CDS 35.0%
ACAAACTAAACTAGGCTTTC+GGG - chr1_2:61165960-61165979 Msa0082340:intron 35.0%
AATCAAAACTAACTGATGCC+AGG + chr1_2:61166132-61166151 None:intergenic 35.0%
ATGAGTTCTGTACTTACAGT+TGG + chr1_2:61166221-61166240 None:intergenic 35.0%
TTGCTGTAAGAGAAACGAAA+AGG + chr1_2:61166288-61166307 None:intergenic 35.0%
CTATTTAAACCCCTACATTC+TGG - chr1_2:61166310-61166329 Msa0082340:intron 35.0%
!! CATTTTCTAGCCAAACTTTC+TGG - chr1_2:61166345-61166364 Msa0082340:intron 35.0%
!! CTGTTTTGTTGCCTTTTTTG+GGG - chr1_2:61166399-61166418 Msa0082340:intron 35.0%
AAGAAAAAAAAAGCCAACGG+TGG + chr1_2:61166446-61166465 None:intergenic 35.0%
TGATAAGTACAAACTCGACT+GGG + chr1_2:61166560-61166579 None:intergenic 35.0%
!!! GCACAATCTAGTTTTACTGT+CGG - chr1_2:61166911-61166930 Msa0082340:CDS 35.0%
ACCTTACTCAATTGTGTGAT+TGG - chr1_2:61167186-61167205 Msa0082340:CDS 35.0%
ACCAATCACACAATTGAGTA+AGG + chr1_2:61167190-61167209 None:intergenic 35.0%
!! ATTGTGTGATTGGTGTTATC+TGG - chr1_2:61167196-61167215 Msa0082340:CDS 35.0%
TGTTATCTGGTTAATTGTCC+AGG - chr1_2:61167209-61167228 Msa0082340:CDS 35.0%
CCATAAGAAACTTGTAGCTT+AGG + chr1_2:61167311-61167330 None:intergenic 35.0%
CCTAAGCTACAAGTTTCTTA+TGG - chr1_2:61167308-61167327 Msa0082340:CDS 35.0%
ATACAACAGAACTTGTGAAG+GGG + chr1_2:61167368-61167387 None:intergenic 35.0%
CATACAACAGAACTTGTGAA+GGG + chr1_2:61167369-61167388 None:intergenic 35.0%
ACATACAACAGAACTTGTGA+AGG + chr1_2:61167370-61167389 None:intergenic 35.0%
ATCTATGGGTCCAGAATTTA+TGG - chr1_2:61167528-61167547 Msa0082340:CDS 35.0%
TCCTCAATAACACGATACTT+TGG - chr1_2:61167555-61167574 Msa0082340:CDS 35.0%
CCTCAATAACACGATACTTT+GGG - chr1_2:61167556-61167575 Msa0082340:CDS 35.0%
AGAAATTTGAAAAATGGGCG+AGG - chr1_2:61167581-61167600 Msa0082340:CDS 35.0%
! TTCAATGTGTGTGGTTTGGA+TGG + chr1_2:61163239-61163258 None:intergenic 40.0%
CTCAAAAAACCAGTGGTAGT+AGG - chr1_2:61163333-61163352 Msa0082340:three_prime_UTR 40.0%
TATCTGTTACCTACTACCAC+TGG + chr1_2:61163345-61163364 None:intergenic 40.0%
TTGAGATTCTCTTTCTCTGG+TGG + chr1_2:61163414-61163433 None:intergenic 40.0%
AGGTTGAGATTCTCTTTCTC+TGG + chr1_2:61163417-61163436 None:intergenic 40.0%
!!! TTTTGGGTTGGAATAAAGGG+AGG + chr1_2:61163509-61163528 None:intergenic 40.0%
!!! GGGATTTTGGGTTGGAATAA+AGG + chr1_2:61163513-61163532 None:intergenic 40.0%
!! GTAAAGATGGGATTTTGGGT+TGG + chr1_2:61163521-61163540 None:intergenic 40.0%
! GTGGTGGTGATAGTAAAGAT+GGG + chr1_2:61163533-61163552 None:intergenic 40.0%
ACTTTAAGCTTATTGGGTGG+TGG + chr1_2:61163552-61163571 None:intergenic 40.0%
GGTACTTTAAGCTTATTGGG+TGG + chr1_2:61163555-61163574 None:intergenic 40.0%
ATGAGTGAGTGATGAAGCTT+GGG + chr1_2:61163580-61163599 None:intergenic 40.0%
TTTGTTGGAAGGGGAAGAAT+GGG + chr1_2:61163622-61163641 None:intergenic 40.0%
! TTTTGTTGGAAGGGGAAGAA+TGG + chr1_2:61163623-61163642 None:intergenic 40.0%
ATTACGGAACCAAACAATGG+CGG + chr1_2:61163748-61163767 None:intergenic 40.0%
GAAGATTTCCCATAATCAGC+AGG + chr1_2:61163852-61163871 None:intergenic 40.0%
! TTGAATCGGTTTCGGATCTT+AGG - chr1_2:61163916-61163935 Msa0082340:intron 40.0%
AGGAAGAATCTTAAGGCAAG+AGG - chr1_2:61163936-61163955 Msa0082340:intron 40.0%
GGAAGAATCTTAAGGCAAGA+GGG - chr1_2:61163937-61163956 Msa0082340:intron 40.0%
AATTCAACCAAAACCGTCTC+CGG + chr1_2:61163990-61164009 None:intergenic 40.0%
GTTGAATTGGCGAAGGAAAT+TGG - chr1_2:61164002-61164021 Msa0082340:intron 40.0%
TGAATTGGCGAAGGAAATTG+GGG - chr1_2:61164004-61164023 Msa0082340:intron 40.0%
TGCTGTGTATTGTCATAGAG+AGG - chr1_2:61164031-61164050 Msa0082340:intron 40.0%
TAGAGAGGTTTCTCATGATG+AGG - chr1_2:61164046-61164065 Msa0082340:intron 40.0%
TTCTCATGATGAGGTGAAGA+TGG - chr1_2:61164055-61164074 Msa0082340:intron 40.0%
AAGATGGAGGAGAAGATTGA+AGG - chr1_2:61164071-61164090 Msa0082340:intron 40.0%
AGATGGAGGAGAAGATTGAA+GGG - chr1_2:61164072-61164091 Msa0082340:intron 40.0%
GAAGATTGAAGGGAAGATGA+AGG - chr1_2:61164082-61164101 Msa0082340:intron 40.0%
!! ATGTGGAGGTGAAGTGTTTT+TGG - chr1_2:61164111-61164130 Msa0082340:intron 40.0%
!! TGTGGAGGTGAAGTGTTTTT+GGG - chr1_2:61164112-61164131 Msa0082340:intron 40.0%
! TGAGGATTTGCCGTTTAGTT+TGG - chr1_2:61164154-61164173 Msa0082340:intron 40.0%
GGCATATCCTCCAAACTAAA+CGG + chr1_2:61164167-61164186 None:intergenic 40.0%
!! TGAGGCTTTGGATCAACTTA+AGG - chr1_2:61164244-61164263 Msa0082340:intron 40.0%
!! GAGGCTTTGGATCAACTTAA+GGG - chr1_2:61164245-61164264 Msa0082340:intron 40.0%
! ATTCCTACTTTGATGGACCT+TGG - chr1_2:61164302-61164321 Msa0082340:intron 40.0%
GAAAAACACCTGTGACATTG+TGG + chr1_2:61164342-61164361 None:intergenic 40.0%
TACATGTACCAATACGTGTC+GGG - chr1_2:61164523-61164542 Msa0082340:intron 40.0%
CCACCAACACTTCTCATAAA+AGG + chr1_2:61164561-61164580 None:intergenic 40.0%
!!! CCTTTTATGAGAAGTGTTGG+TGG - chr1_2:61164558-61164577 Msa0082340:intron 40.0%
! CAATATATCGGCCTTGTGAA+AGG + chr1_2:61164767-61164786 None:intergenic 40.0%
CTTTCACAAGGCCGATATAT+TGG - chr1_2:61164765-61164784 Msa0082340:intron 40.0%
! TATTGGTTGTAACCTTGTGC+AGG - chr1_2:61165029-61165048 Msa0082340:intron 40.0%
CTAATTCTTCCATGACAGGA+GGG - chr1_2:61165067-61165086 Msa0082340:intron 40.0%
TAATTCTTCCATGACAGGAG+GGG - chr1_2:61165068-61165087 Msa0082340:intron 40.0%
CAAACAAGGGGTTTAAGGAT+GGG - chr1_2:61165145-61165164 Msa0082340:intron 40.0%
AAACAAGGGGTTTAAGGATG+GGG - chr1_2:61165146-61165165 Msa0082340:intron 40.0%
GGGGCACAAGATAGTATATA+TGG - chr1_2:61165165-61165184 Msa0082340:intron 40.0%
AATTTCTCCATGGTTGGCAA+TGG - chr1_2:61165206-61165225 Msa0082340:intron 40.0%
ATTTCTCCATGGTTGGCAAT+GGG - chr1_2:61165207-61165226 Msa0082340:intron 40.0%
!! GGTTGATGTTTGAGTTGCTA+TGG - chr1_2:61165422-61165441 Msa0082340:intron 40.0%
!! TGATGTTTGAGTTGCTATGG+AGG - chr1_2:61165425-61165444 Msa0082340:intron 40.0%
!! GATGTTTGAGTTGCTATGGA+GGG - chr1_2:61165426-61165445 Msa0082340:intron 40.0%
! GCTGTGTTGCATCATACTTT+TGG - chr1_2:61165624-61165643 Msa0082340:CDS 40.0%
GACCGTTCAGATATTCTCTT+AGG - chr1_2:61165727-61165746 Msa0082340:intron 40.0%
GGCCTAAGAGAATATCTGAA+CGG + chr1_2:61165732-61165751 None:intergenic 40.0%
AGTTGTCCAAGACTTGAATC+GGG + chr1_2:61166059-61166078 None:intergenic 40.0%
CAGTTGTCCAAGACTTGAAT+CGG + chr1_2:61166060-61166079 None:intergenic 40.0%
TATAGCTAGCATTGCTTAGC+TGG - chr1_2:61166105-61166124 Msa0082340:intron 40.0%
ATAGCTAGCATTGCTTAGCT+GGG - chr1_2:61166106-61166125 Msa0082340:intron 40.0%
CATGCTGAACTGTATCAAAC+TGG + chr1_2:61166187-61166206 None:intergenic 40.0%
TTGGCTAGAAAATGCAGAGA+CGG + chr1_2:61166339-61166358 None:intergenic 40.0%
GTGATAAGTACAAACTCGAC+TGG + chr1_2:61166561-61166580 None:intergenic 40.0%
TTCCCCTTTCCTAGAAATGT+AGG - chr1_2:61166721-61166740 Msa0082340:CDS 40.0%
TCCCCTTTCCTAGAAATGTA+GGG - chr1_2:61166722-61166741 Msa0082340:CDS 40.0%
ATAACACCCCCTACATTTCT+AGG + chr1_2:61166733-61166752 None:intergenic 40.0%
CTAGGGAAAATTGATTGGGT+TGG - chr1_2:61167004-61167023 Msa0082340:CDS 40.0%
TGAGGAAGAGCCATAAATTC+TGG + chr1_2:61167541-61167560 None:intergenic 40.0%
!! CCCAAAGTATCGTGTTATTG+AGG + chr1_2:61167559-61167578 None:intergenic 40.0%
! TCTGGTGGTGTTTGGTTGTT+GGG + chr1_2:61163399-61163418 None:intergenic 45.0%
! TCTCTTTCTCTGGTGGTGTT+TGG + chr1_2:61163407-61163426 None:intergenic 45.0%
TTGGAATAAAGGGAGGAGAG+AGG + chr1_2:61163502-61163521 None:intergenic 45.0%
! GGTGGTGGTGATAGTAAAGA+TGG + chr1_2:61163534-61163553 None:intergenic 45.0%
! TTAAGCTTATTGGGTGGTGG+TGG + chr1_2:61163549-61163568 None:intergenic 45.0%
GATGAGTGAGTGATGAAGCT+TGG + chr1_2:61163581-61163600 None:intergenic 45.0%
AGGAGAGTGGTGATTTGAGA+GGG + chr1_2:61163674-61163693 None:intergenic 45.0%
AAGGAGAGTGGTGATTTGAG+AGG + chr1_2:61163675-61163694 None:intergenic 45.0%
GAATCTTAAGGCAAGAGGGT+CGG - chr1_2:61163941-61163960 Msa0082340:intron 45.0%
!!! GGAGACGGTTTTGGTTGAAT+TGG - chr1_2:61163989-61164008 Msa0082340:intron 45.0%
!!! GGTTTTGGTTGAATTGGCGA+AGG - chr1_2:61163995-61164014 Msa0082340:intron 45.0%
TCATGATGAGGTGAAGATGG+AGG - chr1_2:61164058-61164077 Msa0082340:intron 45.0%
GATTGAAGGGAAGATGAAGG+AGG - chr1_2:61164085-61164104 Msa0082340:intron 45.0%
GAAGATGAAGGAGGAGAATG+TGG - chr1_2:61164094-61164113 Msa0082340:intron 45.0%
!! GTGGAGGTGAAGTGTTTTTG+GGG - chr1_2:61164113-61164132 Msa0082340:intron 45.0%
!! GGATTTGCCGTTTAGTTTGG+AGG - chr1_2:61164157-61164176 Msa0082340:intron 45.0%
AGACCAAGGTCCATCAAAGT+AGG + chr1_2:61164308-61164327 None:intergenic 45.0%
!! TGGCAGATGGATTAAGACCA+AGG + chr1_2:61164322-61164341 None:intergenic 45.0%
!! ATGCTGCATTGGCTCATTCT+TGG - chr1_2:61164404-61164423 Msa0082340:intron 45.0%
!! TGCATTGGCTCATTCTTGGA+TGG - chr1_2:61164408-61164427 Msa0082340:intron 45.0%
GTTGTAACCTTGTGCAGGAT+GGG - chr1_2:61165034-61165053 Msa0082340:intron 45.0%
GTCATGGAAGAATTAGGCAC+TGG + chr1_2:61165063-61165082 None:intergenic 45.0%
GTGCCTAATTCTTCCATGAC+AGG - chr1_2:61165063-61165082 Msa0082340:intron 45.0%
CCTCCTGTCATGGAAGAATT+AGG + chr1_2:61165069-61165088 None:intergenic 45.0%
CCTAATTCTTCCATGACAGG+AGG - chr1_2:61165066-61165085 Msa0082340:intron 45.0%
TGTGAAGCTCAGCCAAACAA+GGG - chr1_2:61165132-61165151 Msa0082340:intron 45.0%
TCAGCCAAACAAGGGGTTTA+AGG - chr1_2:61165140-61165159 Msa0082340:intron 45.0%
CCATCCTTAAACCCCTTGTT+TGG + chr1_2:61165147-61165166 None:intergenic 45.0%
CCAAACAAGGGGTTTAAGGA+TGG - chr1_2:61165144-61165163 Msa0082340:intron 45.0%
TCAGCTCATCAAACATTGCG+CGG + chr1_2:61165245-61165264 None:intergenic 45.0%
AGCTGAAGAAAACTGCAAGC+AGG - chr1_2:61165259-61165278 Msa0082340:intron 45.0%
TGCTATGGAGGGACTTCTTT+AGG - chr1_2:61165437-61165456 Msa0082340:intron 45.0%
TAGACCCATGCCCTAAGTTT+GGG - chr1_2:61166026-61166045 Msa0082340:intron 45.0%
ATGTCCCAAACTTAGGGCAT+GGG + chr1_2:61166033-61166052 None:intergenic 45.0%
AAGTACAAACTCGACTGGGT+GGG + chr1_2:61166556-61166575 None:intergenic 45.0%
TAAGTACAAACTCGACTGGG+TGG + chr1_2:61166557-61166576 None:intergenic 45.0%
! CCCCTACATTTCTAGGAAAG+GGG + chr1_2:61166726-61166745 None:intergenic 45.0%
CCCCTTTCCTAGAAATGTAG+GGG - chr1_2:61166723-61166742 Msa0082340:CDS 45.0%
! CCCCCTACATTTCTAGGAAA+GGG + chr1_2:61166727-61166746 None:intergenic 45.0%
CCCTTTCCTAGAAATGTAGG+GGG - chr1_2:61166724-61166743 Msa0082340:CDS 45.0%
! ACCCCCTACATTTCTAGGAA+AGG + chr1_2:61166728-61166747 None:intergenic 45.0%
!! GTAGGGGGTGTTATTGTTCT+TGG - chr1_2:61166739-61166758 Msa0082340:CDS 45.0%
! GGTTGGCTCTTTCAGTGAAA+GGG - chr1_2:61167021-61167040 Msa0082340:CDS 45.0%
! CTCTGGTGGTGTTTGGTTGT+TGG + chr1_2:61163400-61163419 None:intergenic 50.0%
AGGGAGAGAGAAGCAAGTGA+CGG + chr1_2:61163471-61163490 None:intergenic 50.0%
GAGGAGAGAGGAGAGAGAAA+GGG + chr1_2:61163490-61163509 None:intergenic 50.0%
GTGAGTGATGAAGCTTGGGT+TGG + chr1_2:61163576-61163595 None:intergenic 50.0%
!! AGGGGAAGAATGGGTTTTGG+TGG + chr1_2:61163613-61163632 None:intergenic 50.0%
!! GGAAGGGGAAGAATGGGTTT+TGG + chr1_2:61163616-61163635 None:intergenic 50.0%
AGTAGGACGGTGAGGGATTA+AGG + chr1_2:61163694-61163713 None:intergenic 50.0%
TTCGGAGAACCGCCATTGTT+TGG - chr1_2:61163736-61163755 Msa0082340:CDS 50.0%
TCGGATCTTGTGGTGAGAGT+TGG - chr1_2:61163960-61163979 Msa0082340:intron 50.0%
CGGATCTTGTGGTGAGAGTT+GGG - chr1_2:61163961-61163980 Msa0082340:intron 50.0%
ATTGGCGAAGGAAATTGGGG+CGG - chr1_2:61164007-61164026 Msa0082340:intron 50.0%
GATGAAGGAGGAGAATGTGG+AGG - chr1_2:61164097-61164116 Msa0082340:intron 50.0%
GCTGAACATCACCACGAGAA+GGG + chr1_2:61164274-61164293 None:intergenic 50.0%
AGCTGAACATCACCACGAGA+AGG + chr1_2:61164275-61164294 None:intergenic 50.0%
! TCTCGTGGTGATGTTCAGCT+TGG - chr1_2:61164275-61164294 Msa0082340:intron 50.0%
TCCATCTGCCACAATGTCAC+AGG - chr1_2:61164331-61164350 Msa0082340:intron 50.0%
ACCTGTGACATTGTGGCAGA+TGG + chr1_2:61164335-61164354 None:intergenic 50.0%
ACCAATACGTGTCGGGACAT+TGG - chr1_2:61164530-61164549 Msa0082340:intron 50.0%
TCCAATGTCCCGACACGTAT+TGG + chr1_2:61164534-61164553 None:intergenic 50.0%
AGCATGCAGCAGAAACAAGC+AGG + chr1_2:61164936-61164955 None:intergenic 50.0%
GGTTGTAACCTTGTGCAGGA+TGG - chr1_2:61165033-61165052 Msa0082340:intron 50.0%
GTGTGAAGCTCAGCCAAACA+AGG - chr1_2:61165131-61165150 Msa0082340:intron 50.0%
GTGAAGCTCAGCCAAACAAG+GGG - chr1_2:61165133-61165152 Msa0082340:intron 50.0%
AGCTCATCAAACATTGCGCG+GGG + chr1_2:61165243-61165262 None:intergenic 50.0%
CAGCTCATCAAACATTGCGC+GGG + chr1_2:61165244-61165263 None:intergenic 50.0%
! GATGGTGGCTCATCCAAAAC+TGG - chr1_2:61165391-61165410 Msa0082340:intron 50.0%
CTAAACTAGGCTTTCGGGCT+AGG - chr1_2:61165965-61165984 Msa0082340:intron 50.0%
CTAGACCCATGCCCTAAGTT+TGG - chr1_2:61166025-61166044 Msa0082340:intron 50.0%
CATGTCCCAAACTTAGGGCA+TGG + chr1_2:61166034-61166053 None:intergenic 50.0%
GGGCTCATGTCCCAAACTTA+GGG + chr1_2:61166039-61166058 None:intergenic 50.0%
CATGAGCCCGATTCAAGTCT+TGG - chr1_2:61166050-61166069 Msa0082340:intron 50.0%
GCTAGAAAATGCAGAGACGG+TGG + chr1_2:61166336-61166355 None:intergenic 50.0%
!!! CCTTTTTTGGGGTCTGCAGA+CGG - chr1_2:61166410-61166429 Msa0082340:intron 50.0%
!! GGGTTGGCTCTTTCAGTGAA+AGG - chr1_2:61167020-61167039 Msa0082340:CDS 50.0%
TCTCAACCTCACACCCTCAC+CGG - chr1_2:61163428-61163447 Msa0082340:three_prime_UTR 55.0%
AGAGAAGCAAGTGACGGTGG+TGG + chr1_2:61163465-61163484 None:intergenic 55.0%
GAGAGAGAAGCAAGTGACGG+TGG + chr1_2:61163468-61163487 None:intergenic 55.0%
GGAGGAGAGAGGAGAGAGAA+AGG + chr1_2:61163491-61163510 None:intergenic 55.0%
CGGTGAGGGATTAAGGAGAG+TGG + chr1_2:61163687-61163706 None:intergenic 55.0%
AAGGGTCAGTAGGACGGTGA+GGG + chr1_2:61163701-61163720 None:intergenic 55.0%
CGGAAGAAGGGTCAGTAGGA+CGG + chr1_2:61163707-61163726 None:intergenic 55.0%
TGTGGTGAGAGTTGGGAAGC+CGG - chr1_2:61163968-61163987 Msa0082340:intron 55.0%
CTTAAGGGTCTCCCTTCTCG+TGG - chr1_2:61164260-61164279 Msa0082340:intron 55.0%
TTCAGTCTCCCCTCCTGTCA+TGG + chr1_2:61165079-61165098 None:intergenic 55.0%
! GGGAGACTGAAGCACTACAG+AGG - chr1_2:61165088-61165107 Msa0082340:intron 55.0%
AGGCATCCCATTGCCAACCA+TGG + chr1_2:61165216-61165235 None:intergenic 55.0%
CTCATCAAACATTGCGCGGG+GGG + chr1_2:61165241-61165260 None:intergenic 55.0%
GCTCATCAAACATTGCGCGG+GGG + chr1_2:61165242-61165261 None:intergenic 55.0%
CGGGCTCATGTCCCAAACTT+AGG + chr1_2:61166040-61166059 None:intergenic 55.0%
TAGCATTGCTTAGCTGGGCC+TGG - chr1_2:61166111-61166130 Msa0082340:intron 55.0%
AGACGGTGGCCAGAATGTAG+GGG + chr1_2:61166322-61166341 None:intergenic 55.0%
GAGACGGTGGCCAGAATGTA+GGG + chr1_2:61166323-61166342 None:intergenic 55.0%
AGAGACGGTGGCCAGAATGT+AGG + chr1_2:61166324-61166343 None:intergenic 55.0%
CCGTCTGCAGACCCCAAAAA+AGG + chr1_2:61166413-61166432 None:intergenic 55.0%
TGCTCCAGCCACTGCTTGTA+CGG - chr1_2:61167276-61167295 Msa0082340:CDS 55.0%
!! GCAAGTGACGGTGGTGGAAG+CGG + chr1_2:61163459-61163478 None:intergenic 60.0%
GAAGGGTCAGTAGGACGGTG+AGG + chr1_2:61163702-61163721 None:intergenic 60.0%
GAAGAGCAGCGGCGGAAGAA+GGG + chr1_2:61163719-61163738 None:intergenic 60.0%
CTTCTTCCGCCGCTGCTCTT+CGG - chr1_2:61163718-61163737 Msa0082340:CDS 60.0%
GGCAAGAGGGTCGGATCTTG+TGG - chr1_2:61163950-61163969 Msa0082340:intron 60.0%
GAGAGTTGGGAAGCCGGAGA+CGG - chr1_2:61163974-61163993 Msa0082340:intron 60.0%
! TGGGAAGCCGGAGACGGTTT+TGG - chr1_2:61163980-61163999 Msa0082340:intron 60.0%
CTGGCTTCCCATCCTGCACA+AGG + chr1_2:61165044-61165063 None:intergenic 60.0%
! CTAGGCTTTCGGGCTAGGTC+AGG - chr1_2:61165970-61165989 Msa0082340:intron 60.0%
GCTCCAGCCACTGCTTGTAC+GGG - chr1_2:61167277-61167296 Msa0082340:CDS 60.0%
AAGCGCACCCGTACAAGCAG+TGG + chr1_2:61167287-61167306 None:intergenic 60.0%
! GTGGTTCCGGTGAGGGTGTG+AGG + chr1_2:61163437-61163456 None:intergenic 65.0%
GGAAGCGGTGGTTCCGGTGA+GGG + chr1_2:61163444-61163463 None:intergenic 65.0%
TGGAAGCGGTGGTTCCGGTG+AGG + chr1_2:61163445-61163464 None:intergenic 65.0%
!! GGTGGTGGAAGCGGTGGTTC+CGG + chr1_2:61163450-61163469 None:intergenic 65.0%
!! AGTGACGGTGGTGGAAGCGG+TGG + chr1_2:61163456-61163475 None:intergenic 65.0%
GCGGCGGAAGAAGGGTCAGT+AGG + chr1_2:61163711-61163730 None:intergenic 65.0%
CGAAGAGCAGCGGCGGAAGA+AGG + chr1_2:61163720-61163739 None:intergenic 65.0%
GGTTCTCCGAAGAGCAGCGG+CGG + chr1_2:61163727-61163746 None:intergenic 65.0%
GGCGGTTCTCCGAAGAGCAG+CGG + chr1_2:61163730-61163749 None:intergenic 65.0%
CAAACATTGCGCGGGGGGAG+AGG + chr1_2:61165236-61165255 None:intergenic 65.0%
CGGAGTGCAAGCACCACCGT+TGG - chr1_2:61166430-61166449 Msa0082340:intron 65.0%
GCACCCGTACAAGCAGTGGC+TGG + chr1_2:61167283-61167302 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 61163169 61167851 61163169 ID=Msa0082340;Name=Msa0082340
chr1_2 mRNA 61163169 61167851 61163169 ID=Msa0082340-mRNA-1;Parent=Msa0082340;Name=Msa0082340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=221|1|1|1|0.75|0.6|5|499|456
chr1_2 exon 61163169 61163263 61163169 ID=Msa0082340-mRNA-1:exon:20092;Parent=Msa0082340-mRNA-1
chr1_2 exon 61163304 61163789 61163304 ID=Msa0082340-mRNA-1:exon:20091;Parent=Msa0082340-mRNA-1
chr1_2 exon 61165562 61165657 61165562 ID=Msa0082340-mRNA-1:exon:20090;Parent=Msa0082340-mRNA-1
chr1_2 exon 61165740 61165969 61165740 ID=Msa0082340-mRNA-1:exon:20089;Parent=Msa0082340-mRNA-1
chr1_2 exon 61166668 61167851 61166668 ID=Msa0082340-mRNA-1:exon:20088;Parent=Msa0082340-mRNA-1
chr1_2 five_prime_UTR 61167631 61167851 61167631 ID=Msa0082340-mRNA-1:five_prime_utr;Parent=Msa0082340-mRNA-1
chr1_2 CDS 61166668 61167630 61166668 ID=Msa0082340-mRNA-1:cds;Parent=Msa0082340-mRNA-1
chr1_2 CDS 61165740 61165969 61165740 ID=Msa0082340-mRNA-1:cds;Parent=Msa0082340-mRNA-1
chr1_2 CDS 61165562 61165657 61165562 ID=Msa0082340-mRNA-1:cds;Parent=Msa0082340-mRNA-1
chr1_2 CDS 61163708 61163789 61163708 ID=Msa0082340-mRNA-1:cds;Parent=Msa0082340-mRNA-1
chr1_2 three_prime_UTR 61163304 61163707 61163304 ID=Msa0082340-mRNA-1:three_prime_utr;Parent=Msa0082340-mRNA-1
chr1_2 three_prime_UTR 61163169 61163263 61163169 ID=Msa0082340-mRNA-1:three_prime_utr;Parent=Msa0082340-mRNA-1
Gene Sequence

>Msa0082340

ATGGAACCCAACAACCAAACACCACCAGAGAAAGAGAATCTCAACCTCACACCCTCACCGGAACCACCGCTTCCACCACCGTCACTTGCTTCTCTCTCCCTTTCTCTCTCCTCTCTCCTCCCTTTATTCCAACCCAAAATCCCATCTTTACTATCACCACCACCACCCAATAAGCTTAAAGTACCAACCCAAGCTTCATCACTCACTCATCTTTCACTTTCCACCAAAACCCATTCTTCCCCTTCCAACAAAACCTTCAAAAAATCTTCTTTTTCAGCAAACCCTCTCAAATCACCACTCTCCTTAATCCCTCACCGTCCTACTGACCCTTCTTCCGCCGCTGCTCTTCGGAGAACCGCCATTGTTTGGTTCCGTAATGATCTTCGTGTTCATGATAACGAAGCTTTGAACACTGCAAATAATGAGTCCATTTCTGTTTTACCTGTTTATTGTTTTGATCCTGCTGATTATGGGAAATCTTCATCTGGGTTTGATAAAACAGGTCCTTATCGTGCTAGTTTTTTGATTGAATCGGTTTCGGATCTTAGGAAGAATCTTAAGGCAAGAGGGTCGGATCTTGTGGTGAGAGTTGGGAAGCCGGAGACGGTTTTGGTTGAATTGGCGAAGGAAATTGGGGCGGATGCTGTGTATTGTCATAGAGAGGTTTCTCATGATGAGGTGAAGATGGAGGAGAAGATTGAAGGGAAGATGAAGGAGGAGAATGTGGAGGTGAAGTGTTTTTGGGGAAGTACTTTGTATCATGTTGAGGATTTGCCGTTTAGTTTGGAGGATATGCCTTCAAATTATGGTGGTTTTAGAGATAGAGTTCAGAAATTGGAGATAAGGAAAACTATTGAGGCTTTGGATCAACTTAAGGGTCTCCCTTCTCGTGGTGATGTTCAGCTTGGTGATATTCCTACTTTGATGGACCTTGGTCTTAATCCATCTGCCACAATGTCACAGGATGGGAAGCCAGTGCCTAATTCTTCCATGACAGGAGGGGAGACTGAAGCACTACAGAGGCTTAAAAGATTTGCGGCTGAGTGTGAAGCTCAGCCAAACAAGGGGTTTAAGGATGGGGCACAAGATAGTATATATGGTGCCAACTTTTCATGCAAAATTTCTCCATGGTTGGCAATGGGATGCCTCTCCCCCCGCGCAATGTTTGATGAGCTGAAGAAAACTGCAAGCAGTGCTGTTTCCGCTTCATCAAGCAAAAATGATGGTGGCTCATCCAAAACTGGAACTAATTGGTTGATGTTTGAGTTGCTATGGAGGGACTTCTTTAGGTTTATTACCAAAAAATATAGTTCTACTAAGAAACAACTGGAAGCTGCTCCAGCCACTGCTTGTACGGGTGCGCTTGCCTAA

Protein sequence

>Msa0082340

MEPNNQTPPEKENLNLTPSPEPPLPPPSLASLSLSLSSLLPLFQPKIPSLLSPPPPNKLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSANPLKSPLSLIPHRPTDPSSAAALRRTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKMKEENVEVKCFWGSTLYHVEDLPFSLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSRGDVQLGDIPTLMDLGLNPSATMSQDGKPVPNSSMTGGETEALQRLKRFAAECEAQPNKGFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDGGSSKTGTNWLMFELLWRDFFRFITKKYSSTKKQLEAAPATACTGALA*