AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151780 MtrunA17_Chr1g0160461 99.678 621 2 0 1 621 1 621 0.0 1272
Msa0151780 MtrunA17_Chr4g0044181 77.728 669 91 15 1 621 1 659 0.0 972
Msa0151780 MtrunA17_Chr6g0478431 63.125 640 181 13 1 621 1 604 0.0 756
Msa0151780 MtrunA17_Chr7g0255941 63.166 638 171 14 1 621 1 591 0.0 733
Msa0151780 MtrunA17_Chr4g0071571 58.626 655 207 12 1 621 1 625 0.0 712
Msa0151780 MtrunA17_Chr8g0393111 57.235 622 130 15 1 591 1 517 0.0 627
Msa0151780 MtrunA17_Chr1g0159341 47.937 630 216 18 1 621 1 527 2.28e-166 485
Msa0151780 MtrunA17_Chr4g0071551 74.178 213 54 1 1 212 1 213 7.51e-114 339
Msa0151780 MtrunA17_Chr2g0298971 49.402 251 102 5 1 248 1 229 4.62e-74 246
Msa0151780 MtrunA17_Chr2g0298971 39.271 247 101 5 401 600 273 517 3.40e-45 168
Msa0151780 MtrunA17_Chr4g0071561 72.727 154 42 0 444 597 163 316 4.23e-73 238
Msa0151780 MtrunA17_Chr7g0216571 67.089 158 52 0 464 621 210 367 2.27e-65 219
Msa0151780 MtrunA17_Chr7g0216571 55.696 158 70 0 1 158 12 169 2.01e-52 184
Msa0151780 MtrunA17_Chr6g0452821 63.190 163 58 1 461 621 198 360 6.77e-63 212
Msa0151780 MtrunA17_Chr6g0452821 56.329 158 68 1 1 157 1 158 5.95e-51 180
Msa0151780 MtrunA17_Chr7g0249141 53.289 152 71 0 468 619 208 359 1.01e-51 182
Msa0151780 MtrunA17_Chr7g0249141 51.613 155 75 0 1 155 1 155 3.16e-47 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151780 AT1G70940.1 74.768 646 132 13 1 621 1 640 0.0 905
Msa0151780 AT2G01420.1 74.724 633 127 13 1 621 1 612 0.0 897
Msa0151780 AT2G01420.2 74.254 637 127 13 1 621 1 616 0.0 890
Msa0151780 AT1G23080.1 73.428 636 137 12 1 621 1 619 0.0 888
Msa0151780 AT1G23080.3 72.799 636 137 11 1 621 1 615 0.0 881
Msa0151780 AT1G23080.4 72.799 636 137 11 1 621 1 615 0.0 881
Msa0151780 AT1G23080.2 70.205 537 124 11 1 522 1 516 0.0 720
Msa0151780 AT5G57090.1 58.321 667 212 11 1 621 1 647 0.0 718
Msa0151780 AT2G01420.3 72.119 538 113 13 1 522 1 517 0.0 717
Msa0151780 AT1G73590.1 59.385 650 207 12 1 621 1 622 0.0 703
Msa0151780 AT5G57090.2 55.379 567 187 11 101 621 1 547 0.0 552
Msa0151780 AT1G77110.1 48.413 630 256 15 1 621 1 570 3.29e-180 522
Msa0151780 AT1G77110.2 47.697 608 249 15 1 599 1 548 1.05e-167 490
Msa0151780 AT5G15100.1 62.805 164 61 0 458 621 204 367 1.05e-60 206
Msa0151780 AT5G15100.1 49.153 177 80 2 1 172 1 172 1.18e-44 163
Msa0151780 AT5G16530.1 54.000 150 69 0 467 616 195 344 8.28e-51 179
Msa0151780 AT5G16530.1 52.229 157 75 0 1 157 1 157 1.23e-49 176
Msa0151780 AT5G16530.2 52.229 157 75 0 1 157 1 157 3.40e-50 177
Msa0151780 AT5G16530.2 51.825 137 66 0 464 600 192 328 3.61e-43 158

Find 223 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCAAGACATTCCAATTT+TGG 0.071341 1_4:+14110144 Msa0151780:CDS
GGCTTCCATTGTTTCCTTTA+AGG 0.137518 1_4:+14109888 Msa0151780:CDS
CTCAAGTGCTTCACCGGTTT+TGG 0.145717 1_4:+14110437 Msa0151780:CDS
ATCTTTAAGTGTTATCATTT+TGG 0.154954 1_4:-14109377 None:intergenic
ACAATGGAAGCCGCGGTTTC+TGG 0.173798 1_4:-14109877 None:intergenic
ACTCATTCTGTGCAAAATTT+TGG 0.176459 1_4:-14109202 None:intergenic
TTGAATTGCAGGGTTATATT+TGG 0.190580 1_4:+14114131 Msa0151780:intron
ATTATATTTAGGTCTGTTTA+TGG 0.191838 1_4:+14112544 Msa0151780:intron
CAAGTCTCATTGGTCTTATT+TGG 0.200411 1_4:+14111230 Msa0151780:CDS
TAATAGAAAATGAAGGAAAA+TGG 0.213317 1_4:-14109281 None:intergenic
ATTGCCTATACCTTTGTTAT+TGG 0.219936 1_4:-14110562 None:intergenic
CCGCGACTCCGGTGGCTTTA+GGG 0.226606 1_4:-14111108 None:intergenic
TCCGCGACTCCGGTGGCTTT+AGG 0.232306 1_4:-14111109 None:intergenic
CTTCGGATTGTTCCGAATTT+CGG 0.239748 1_4:-14110482 None:intergenic
AATCTGAAGTTCATTTGATA+TGG 0.240310 1_4:-14109571 None:intergenic
CATGATAATAATAGGTAAAA+AGG 0.253119 1_4:-14114661 None:intergenic
TGCTAGTAGCACTTTCATTA+TGG 0.257436 1_4:+14109626 Msa0151780:CDS
TCATCTTGGAATTTCTAATA+TGG 0.257757 1_4:-14114435 None:intergenic
CAAATCATTAGCCCCAAAAT+TGG 0.264008 1_4:-14110157 None:intergenic
CCTTCAAATTTCGAAGAAAA+TGG 0.266779 1_4:+14110219 Msa0151780:CDS
CTTCCTAACACTTTGGTTAT+GGG 0.267472 1_4:+14109709 Msa0151780:CDS
ACTTCCTAACACTTTGGTTA+TGG 0.272014 1_4:+14109708 Msa0151780:CDS
AACATCCGAATCGACCTTAA+AGG 0.272674 1_4:-14109902 None:intergenic
ATGTAGTAGAGTAGAGTAAT+TGG 0.282953 1_4:-14114170 None:intergenic
GACACGTCTCATACTCATTA+TGG 0.285664 1_4:+14111171 Msa0151780:CDS
ACAATAATCATGATAATAAT+AGG 0.297965 1_4:-14114669 None:intergenic
ATATGGAGACATTAGCATTA+TGG 0.309373 1_4:-14114418 None:intergenic
TTAGTAGTAGAGGAGAATTC+CGG 0.312645 1_4:-14110312 None:intergenic
TGATTATTCAGGTAGCTTAA+TGG 0.316996 1_4:+14109759 Msa0151780:CDS
TTTGGTCCCTTGTTGCCTTT+AGG 0.319465 1_4:+14111248 Msa0151780:CDS
GCTATGTATGGTGATTATTC+AGG 0.323216 1_4:+14109748 Msa0151780:CDS
CCTTACTGGTCCAGCAGTTA+TGG 0.341147 1_4:+14112631 Msa0151780:CDS
GAATTCGAGCCCAACTTGTT+AGG 0.341677 1_4:-14111070 None:intergenic
TTGAATAGGTGTTTGGATTA+CGG 0.349635 1_4:-14111210 None:intergenic
TTCTCACCGGATCAATGTTC+CGG 0.355844 1_4:+14109481 Msa0151780:CDS
TCGGATGTTATGTCGTTAGA+TGG 0.360086 1_4:+14109916 Msa0151780:CDS
AAGATCATAGCAACATATAA+TGG 0.361273 1_4:-14109427 None:intergenic
TATGGAGACATTAGCATTAT+GGG 0.368773 1_4:-14114417 None:intergenic
TTATGTAGAGGAAAAGAAAT+TGG 0.368887 1_4:+14114624 Msa0151780:three_prime_UTR
ATTCCCACATGCAATGATCT+TGG 0.369808 1_4:-14112576 None:intergenic
ATGAGACTTGAATAGGTGTT+TGG 0.370771 1_4:-14111217 None:intergenic
AGAGAGCATGTAACATTGTA+AGG 0.373238 1_4:+14114480 Msa0151780:three_prime_UTR
CCTCAATGTCTTCCGAAATT+CGG 0.379629 1_4:+14110470 Msa0151780:CDS
GGAAGTTACATGTTACTGTT+AGG 0.381177 1_4:+14109980 Msa0151780:CDS
AGTTAGTTAACTAGGAGTAT+AGG 0.384939 1_4:-14109240 None:intergenic
TTTGGCACCGGATACGAATT+AGG 0.387532 1_4:-14110288 None:intergenic
TATACAAATGGTTGATAGAA+AGG 0.388340 1_4:-14114571 None:intergenic
GGTGGTCAAGAAAAGGAAAT+TGG 0.389811 1_4:+14110983 Msa0151780:intron
GCTGATGAACATAATCAAAA+TGG 0.390186 1_4:+14110534 Msa0151780:CDS
CTATCTTCCAAAGTATGAAT+AGG 0.391219 1_4:-14114214 None:intergenic
TTCATATAAAATTATACAAA+TGG 0.391462 1_4:-14114583 None:intergenic
CCTTGAAAATTACATCATCT+TGG 0.393042 1_4:-14114449 None:intergenic
ATACTGTCTGATGCTGGTCT+TGG 0.394410 1_4:+14111500 Msa0151780:CDS
AATAGAAAATGAAGGAAAAT+GGG 0.398762 1_4:-14109280 None:intergenic
GCCCAACTTGTTAGGTCCAT+TGG 0.399378 1_4:-14111062 None:intergenic
GGTGCAAGTTCTCCTAGATT+CGG 0.403944 1_4:+14110240 Msa0151780:CDS
CCTACATGTAGCTATTGTTC+AGG 0.405283 1_4:+14112691 Msa0151780:CDS
GTCTCATACTCATTATGGTT+TGG 0.406117 1_4:+14111176 Msa0151780:CDS
ATTCCCATAACCAAAGTGTT+AGG 0.414160 1_4:-14109712 None:intergenic
TGGTTCTTCAGTGTATCATT+TGG 0.415072 1_4:+14109791 Msa0151780:CDS
AAGACCAGCATCAGACAGTA+TGG 0.415534 1_4:-14111498 None:intergenic
ATGGCTATAAGATTCCTTAC+TGG 0.418097 1_4:+14112617 Msa0151780:CDS
CTACTCTACTACATTCTCCT+TGG 0.419596 1_4:+14114179 Msa0151780:CDS
GTAGAGGAGAATTCCGGGTT+TGG 0.423859 1_4:-14110306 None:intergenic
TGTTTCCTTTAAGGTCGATT+CGG 0.427917 1_4:+14109897 Msa0151780:CDS
GGTTGAAATTAGACCCTCTT+GGG 0.428239 1_4:-14110092 None:intergenic
GCCGGATAAAACCCGAATCT+AGG 0.429616 1_4:-14110252 None:intergenic
TAGTAGTAGAGGAGAATTCC+GGG 0.437495 1_4:-14110311 None:intergenic
GTGCAAGTTCTCCTAGATTC+GGG 0.439036 1_4:+14110241 Msa0151780:CDS
TTCTGTTGCTTCATTTGCCA+TGG 0.440626 1_4:+14112598 Msa0151780:CDS
GCCCCAAAATTGGAATGTCT+TGG 0.443621 1_4:-14110147 None:intergenic
TTCCCACATGCAATGATCTT+GGG 0.445777 1_4:-14112575 None:intergenic
ATTGCAGACAAAAGGTTCTC+AGG 0.450066 1_4:+14110386 Msa0151780:CDS
AGTCAAATTATATCTAGAAA+TGG 0.450786 1_4:+14114545 Msa0151780:three_prime_UTR
TTAGGCACAGTTTGCGCTGC+CGG 0.451420 1_4:-14110270 None:intergenic
TCTTCGAAATTTGAAGGTCT+AGG 0.454518 1_4:-14110213 None:intergenic
AAGGAAAATGGGAAAGAAAA+CGG 0.454640 1_4:-14109269 None:intergenic
CCTTTGTTAATTGCTATGTA+TGG 0.454996 1_4:+14109736 Msa0151780:CDS
CGCGACAAAGCGGTTTATAC+CGG 0.455581 1_4:-14109500 None:intergenic
AAGACCAATGAGACTTGAAT+AGG 0.456356 1_4:-14111224 None:intergenic
AACACCTATTCAAGTCTCAT+TGG 0.456598 1_4:+14111220 Msa0151780:CDS
AGGGTCTAATTTCAACCATC+AGG 0.456670 1_4:+14110098 Msa0151780:CDS
AAGGTGTGTCAGAGAAAGTA+GGG 0.458240 1_4:-14109105 None:intergenic
CCCAACTTGTTAGGTCCATT+GGG 0.459861 1_4:-14111061 None:intergenic
AGGCCAGCACTTTCCAAAAC+CGG 0.463171 1_4:-14110450 None:intergenic
CAGGTTCAATTGCAGACAAA+AGG 0.466019 1_4:+14110378 Msa0151780:CDS
GAAGGTGTGTCAGAGAAAGT+AGG 0.466090 1_4:-14109106 None:intergenic
AAGAGGACTTCAAGTTCAAT+GGG 0.468366 1_4:+14111011 Msa0151780:CDS
CCTACGGTTCGGTCCGTTGG+TGG 0.474399 1_4:+14109452 Msa0151780:CDS
ATCAACACTTCCTAACACTT+TGG 0.475928 1_4:+14109702 Msa0151780:CDS
TGCTTACGCTGTACTAAGAA+TGG 0.477801 1_4:-14114010 None:intergenic
CTTCACAGGTTTAGTAGTAG+AGG 0.477907 1_4:-14110322 None:intergenic
GGAATGGCTATGTTTAGCTT+AGG 0.479154 1_4:+14111521 Msa0151780:CDS
TTCGTATCCGGTGCCAAACC+CGG 0.479487 1_4:+14110293 Msa0151780:CDS
TAGCCTACGGTTCGGTCCGT+TGG 0.480227 1_4:+14109449 Msa0151780:CDS
GATCTCCTTAGCACCCTCTT+CGG 0.482409 1_4:-14110499 None:intergenic
TAGCTTAATGGTTCAAGTTG+TGG 0.483646 1_4:+14109771 Msa0151780:CDS
AAAGGAAATTGGTGGGGAAG+AGG 0.484370 1_4:+14110994 Msa0151780:CDS
GTTCATTTGATATGGATTGT+TGG 0.488470 1_4:-14109563 None:intergenic
AACTGTGCCTAATTCGTATC+CGG 0.489229 1_4:+14110281 Msa0151780:CDS
CCGAATTTCGGAAGACATTG+AGG 0.489492 1_4:-14110470 None:intergenic
GGTTGGTTAGTTAGTTAACT+AGG 0.491382 1_4:-14109248 None:intergenic
AATTGAAGGTGGTCAAGAAA+AGG 0.491402 1_4:+14110976 Msa0151780:intron
CCCAATGGACCTAACAAGTT+GGG 0.493053 1_4:+14111061 Msa0151780:CDS
AAGAGGGTGCTAAGGAGATC+AGG 0.493248 1_4:+14110502 Msa0151780:CDS
GTGGAGCTCAAGTGCTTCAC+CGG 0.493646 1_4:+14110431 Msa0151780:CDS
GAAGAGGACTTCAAGTTCAA+TGG 0.495292 1_4:+14111010 Msa0151780:CDS
GATGCATCAGTTGGTGATGA+TGG 0.503763 1_4:+14109958 Msa0151780:CDS
GTTGAATGGCATGTGAAGAA+AGG 0.505360 1_4:-14109323 None:intergenic
AGGAGTACTTGTAATAGTAC+TGG 0.508743 1_4:-14109167 None:intergenic
CTTGAAACTGATGCATCAGT+TGG 0.511837 1_4:+14109949 Msa0151780:CDS
TCAGCTCCAGTCAAATTTGA+CGG 0.512431 1_4:-14110048 None:intergenic
AAATTTGAAGGTCTAGGAGT+TGG 0.515304 1_4:-14110207 None:intergenic
TACGCTGTACTAAGAATGGC+TGG 0.515311 1_4:-14114006 None:intergenic
ATACAAATGGTTGATAGAAA+GGG 0.515594 1_4:-14114570 None:intergenic
GAAGCTGCTGCCATAACTGC+TGG 0.516874 1_4:-14112641 None:intergenic
TCATACTCATTATGGTTTGG+AGG 0.520930 1_4:+14111179 Msa0151780:CDS
GAGAATTCCGGGTTTGGCAC+CGG 0.521354 1_4:-14110300 None:intergenic
CTTGGAATGACAATTTCTGT+TGG 0.522627 1_4:-14114339 None:intergenic
TGGTTGAAATTAGACCCTCT+TGG 0.523061 1_4:-14110093 None:intergenic
CCCTAAAGCCACCGGAGTCG+CGG 0.523391 1_4:+14111108 Msa0151780:CDS
CCGCGACCGTCAAATTTGAC+TGG 0.525623 1_4:+14110042 Msa0151780:CDS
TCTGTCCAGTCTTCTTCTAG+AGG 0.530364 1_4:+14110183 Msa0151780:CDS
CGGTATAAACCGCTTTGTCG+CGG 0.531270 1_4:+14109501 Msa0151780:CDS
TCTATCGCCGTTGGCCTCCG+TGG 0.532052 1_4:+14112662 Msa0151780:CDS
GTCTGATGCTGGTCTTGGAA+TGG 0.532632 1_4:+14111505 Msa0151780:CDS
TTGGTCCTCTAGAAGAAGAC+TGG 0.534857 1_4:-14110188 None:intergenic
ATTTGTAATTGTAGAGTACA+AGG 0.536418 1_4:-14109053 None:intergenic
AGTAGAGTAGAGTAATTGGA+AGG 0.536719 1_4:-14114166 None:intergenic
ATTTCCATACTGTCTGATGC+TGG 0.538744 1_4:+14111494 Msa0151780:CDS
CTATCGCCGTTGGCCTCCGT+GGG 0.540857 1_4:+14112663 Msa0151780:CDS
ACCCAATGGACCTAACAAGT+TGG 0.543856 1_4:+14111060 Msa0151780:CDS
CCATAACTGCTGGACCAGTA+AGG 0.545402 1_4:-14112631 None:intergenic
GACACTTGAATCCGCGACTC+CGG 0.551443 1_4:-14111119 None:intergenic
TCTTGGTTGATAACCCATCA+TGG 0.553358 1_4:-14110130 None:intergenic
ATGTTACATGCTCTCTCTTG+AGG 0.554694 1_4:-14114473 None:intergenic
GTGGCTTTAGGGTGGAGCTC+CGG 0.554827 1_4:-14111097 None:intergenic
AAATTTATAATAGAAAATGA+AGG 0.557862 1_4:-14109288 None:intergenic
GCAGCAGCTTCTATCGCCGT+TGG 0.558133 1_4:+14112653 Msa0151780:CDS
TTTGATGCCGCAACAACCGC+AGG 0.558725 1_4:+14110359 Msa0151780:CDS
TTTATACCGGAACATTGATC+CGG 0.563596 1_4:-14109487 None:intergenic
GATTGTTGGTTGAGATGAAG+TGG 0.564135 1_4:-14109549 None:intergenic
TATGATCTTAGCCTACGGTT+CGG 0.565033 1_4:+14109441 Msa0151780:CDS
TGTCGGAAAACTCATGCCTC+CGG 0.565467 1_4:+14111138 Msa0151780:CDS
CCAGTCAAATTTGACGGTCG+CGG 0.567450 1_4:-14110042 None:intergenic
GTCAAGAAAAGGAAATTGGT+GGG 0.568661 1_4:+14110987 Msa0151780:CDS
AAAATGGGAAAGAAAACGGT+TGG 0.570567 1_4:-14109265 None:intergenic
CTTCAAGTTCAATGGGGTGA+AGG 0.574592 1_4:+14111018 Msa0151780:CDS
GAGGGTCCCACGGAGGCCAA+CGG 0.576668 1_4:-14112669 None:intergenic
AATTCGGAACAATCCGAAGA+GGG 0.578362 1_4:+14110486 Msa0151780:CDS
GAGCTCCACCCTAAAGCCAC+CGG 0.581241 1_4:+14111100 Msa0151780:CDS
GAGAGCATGTAACATTGTAA+GGG 0.581953 1_4:+14114481 Msa0151780:three_prime_UTR
GAAATTAGACCCTCTTGGGG+TGG 0.582116 1_4:-14110088 None:intergenic
CAATAGGCTGCACTTCCACA+AGG 0.583775 1_4:+14113943 Msa0151780:intron
GAACAATAGCTACATGTAGG+AGG 0.585385 1_4:-14112688 None:intergenic
ACTTGAATCCGCGACTCCGG+TGG 0.585921 1_4:-14111116 None:intergenic
AGTTAACTAGGAGTATAGGA+AGG 0.586720 1_4:-14109236 None:intergenic
GTGGAATGAAAGGAGAGGTA+CGG 0.587057 1_4:-14109530 None:intergenic
AAGTTCAATGGGGTGAAGGT+AGG 0.588094 1_4:+14111022 Msa0151780:CDS
GAACAAGGAGAAGGACCCAA+TGG 0.588943 1_4:+14111046 Msa0151780:CDS
CTGTACTAAGAATGGCTGGA+TGG 0.589732 1_4:-14114002 None:intergenic
AGTAAGGAATCTTATAGCCA+TGG 0.592444 1_4:-14112615 None:intergenic
GGGGTGAAGGTAGGAGAACA+AGG 0.592671 1_4:+14111031 Msa0151780:CDS
ATCGACCTTAAAGGAAACAA+TGG 0.593244 1_4:-14109893 None:intergenic
ACAATCCGAAGAGGGTGCTA+AGG 0.593701 1_4:+14110494 Msa0151780:CDS
GTAGAGTAGAGTAATTGGAA+GGG 0.595548 1_4:-14114165 None:intergenic
TTACACTGTCTTAACAGCAG+TGG 0.596282 1_4:+14109402 Msa0151780:CDS
TTGAGATGAAGTGGAATGAA+AGG 0.597744 1_4:-14109540 None:intergenic
ATGCATCAGTTGGTGATGAT+GGG 0.598176 1_4:+14109959 Msa0151780:CDS
TCATGGAGTAAAACTCCTGA+TGG 0.598436 1_4:-14110113 None:intergenic
GTTGCTATGATCTTAGCCTA+CGG 0.598914 1_4:+14109436 Msa0151780:CDS
AATTGAACCTGCGGTTGTTG+CGG 0.599082 1_4:-14110366 None:intergenic
AGACGTGTCATGACGCTCGC+CGG 0.600055 1_4:-14111157 None:intergenic
AGACATAAAAGAGGAAAACA+TGG 0.600168 1_4:+14114504 Msa0151780:three_prime_UTR
CAACCCAAGATCATTGCATG+TGG 0.601268 1_4:+14112572 Msa0151780:CDS
TTGAGGAAGTAATTATGTAG+AGG 0.602465 1_4:+14114612 Msa0151780:three_prime_UTR
CCTGAACAATAGCTACATGT+AGG 0.602969 1_4:-14112691 None:intergenic
CGACTCCGGTGGCTTTAGGG+TGG 0.603330 1_4:-14111105 None:intergenic
GTATAGAAACTAGAAAGAGA+AGG 0.606056 1_4:-14109124 None:intergenic
AAGGTAGGAGAACAAGGAGA+AGG 0.608019 1_4:+14111037 Msa0151780:CDS
GGTCAAGAAAAGGAAATTGG+TGG 0.613131 1_4:+14110986 Msa0151780:CDS
ATACCTACCTAAAGGCAACA+AGG 0.617062 1_4:-14111255 None:intergenic
AACAATAGCTACATGTAGGA+GGG 0.617085 1_4:-14112687 None:intergenic
GGAGTCGCGGATTCAAGTGT+CGG 0.620160 1_4:+14111121 Msa0151780:CDS
TACCTACCTAAAGGCAACAA+GGG 0.621757 1_4:-14111254 None:intergenic
TGGAAGATAGTAAACATGCA+TGG 0.626487 1_4:+14114227 Msa0151780:three_prime_UTR
CCACCAACGGACCGAACCGT+AGG 0.627762 1_4:-14109452 None:intergenic
AATGGTGAAACCAATAACAA+AGG 0.629421 1_4:+14110552 Msa0151780:CDS
AAAGGAAACAATGGAAGCCG+CGG 0.630714 1_4:-14109884 None:intergenic
GAAGTATTCTATTCTTCACA+AGG 0.632098 1_4:+14114261 Msa0151780:three_prime_UTR
ATGAAGTGGAATGAAAGGAG+AGG 0.632775 1_4:-14109535 None:intergenic
TTTGTCTGCAATTGAACCTG+CGG 0.633224 1_4:-14110375 None:intergenic
AAGAGTTGCATATGTTTGTG+TGG 0.633927 1_4:+14110412 Msa0151780:CDS
GGTTTGTGAGACTAAGATGA+GGG 0.635837 1_4:-14109146 None:intergenic
GTCTCAGCTCCACCCCAAGA+GGG 0.636397 1_4:+14110079 Msa0151780:CDS
TGCTAAGGAGATCAGGATGG+TGG 0.637132 1_4:+14110509 Msa0151780:CDS
CGTGTCATGACGCTCGCCGG+AGG 0.639607 1_4:-14111154 None:intergenic
TTGTAAGGGAGACATAAAAG+AGG 0.640038 1_4:+14114495 Msa0151780:three_prime_UTR
TAAGGAGATCAGGATGGTGG+TGG 0.640923 1_4:+14110512 Msa0151780:CDS
GTGAGAAAATCTTCCACCAA+CGG 0.645716 1_4:-14109465 None:intergenic
AAAAGAGGAAAACATGGGAA+CGG 0.649795 1_4:+14114510 Msa0151780:three_prime_UTR
GACATAAAAGAGGAAAACAT+GGG 0.651787 1_4:+14114505 Msa0151780:three_prime_UTR
GTTGAAATTAGACCCTCTTG+GGG 0.655412 1_4:-14110091 None:intergenic
AACCCAAGATCATTGCATGT+GGG 0.657323 1_4:+14112573 Msa0151780:CDS
TCAAGAAAAGGAAATTGGTG+GGG 0.659437 1_4:+14110988 Msa0151780:CDS
AGTCTCAGCTCCACCCCAAG+AGG 0.662338 1_4:+14110078 Msa0151780:CDS
TTAGGAAGTCTAACGCGTCG+CGG 0.669107 1_4:+14109998 Msa0151780:CDS
TGGTTTGTGAGACTAAGATG+AGG 0.671362 1_4:-14109147 None:intergenic
GGGTGCTAAGGAGATCAGGA+TGG 0.673250 1_4:+14110506 Msa0151780:CDS
AAATTCGGAACAATCCGAAG+AGG 0.673663 1_4:+14110485 Msa0151780:CDS
CTACATGTAGGAGGGTCCCA+CGG 0.676202 1_4:-14112679 None:intergenic
ACAAATGGAACAATCCCTTG+TGG 0.676637 1_4:-14113958 None:intergenic
GGAGCAGTTTCCAGAAACCG+CGG 0.676934 1_4:+14109867 Msa0151780:CDS
CCATACATAGCAATTAACAA+AGG 0.679313 1_4:-14109736 None:intergenic
TGATTAAAAGCTTAGCACCA+CGG 0.681803 1_4:-14109843 None:intergenic
AGGTGTGTCAGAGAAAGTAG+GGG 0.684117 1_4:-14109104 None:intergenic
GGAAGTCTAACGCGTCGCGG+AGG 0.686204 1_4:+14110001 Msa0151780:CDS
GGTGTGTCAGAGAAAGTAGG+GGG 0.690706 1_4:-14109103 None:intergenic
AATAGGCTGCACTTCCACAA+GGG 0.700469 1_4:+14113944 Msa0151780:intron
CGGCGAAAACCGCGACAAAG+CGG 0.708474 1_4:-14109510 None:intergenic
GTTGGGCTCGAATTCAACGC+CGG 0.711535 1_4:+14111078 Msa0151780:CDS
CATGTAGGAGGGTCCCACGG+AGG 0.715446 1_4:-14112676 None:intergenic
AGAGGACTTCAAGTTCAATG+GGG 0.771569 1_4:+14111012 Msa0151780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr1_4:14112742-14112761 Msa0151780:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr1_4:14112741-14112760 Msa0151780:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr1_4:14112741-14112760 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr1_4:14112742-14112761 None:intergenic 0.0%
!! AAATTTATAATAGAAAATGA+AGG - chr1_4:14109291-14109310 None:intergenic 10.0%
!! TAATTTAATTCTAATATAGT+TGG + chr1_4:14110742-14110761 Msa0151780:intron 10.0%
!! ATAAAAAATTAAAAGAAGTT+TGG + chr1_4:14111324-14111343 Msa0151780:intron 10.0%
!!! ATGTTGATAATTATAAAAAA+AGG + chr1_4:14111651-14111670 Msa0151780:intron 10.0%
!! ATAAAAGAAAATTAGTATAT+AGG - chr1_4:14111998-14112017 None:intergenic 10.0%
!! CATATTTGTTTATTATATTT+AGG + chr1_4:14112533-14112552 Msa0151780:intron 10.0%
!!! TTTATTTTTTTTATTTGAGA+AGG + chr1_4:14114293-14114312 Msa0151780:three_prime_UTR 10.0%
!! TTCATATAAAATTATACAAA+TGG - chr1_4:14114586-14114605 None:intergenic 10.0%
!!! GTATAATTTTATATGAAAAT+CGG + chr1_4:14114589-14114608 Msa0151780:three_prime_UTR 10.0%
!! TTGTTAGATTAATTTAACAA+CGG - chr1_4:14110692-14110711 None:intergenic 15.0%
!! TTGTTAAATTAATCTAACAA+CGG + chr1_4:14110692-14110711 Msa0151780:intron 15.0%
!!! ATTGATTTCTCTATTATTTT+AGG - chr1_4:14111476-14111495 None:intergenic 15.0%
!!! TTGATAATTATAAAAAAAGG+TGG + chr1_4:14111654-14111673 Msa0151780:intron 15.0%
!! TTAGAAATATATCAACAAAA+GGG - chr1_4:14112392-14112411 None:intergenic 15.0%
!! TTTAGAAATATATCAACAAA+AGG - chr1_4:14112393-14112412 None:intergenic 15.0%
!! ATTCATTTGTCTTAAATTAT+TGG - chr1_4:14112420-14112439 None:intergenic 15.0%
!!! TTTTTTATAAATTGAATTGC+AGG + chr1_4:14114120-14114139 Msa0151780:intron 15.0%
!!! TTTTTATAAATTGAATTGCA+GGG + chr1_4:14114121-14114140 Msa0151780:intron 15.0%
!! ACAATAATCATGATAATAAT+AGG - chr1_4:14114672-14114691 None:intergenic 15.0%
!! AATAGAAAATGAAGGAAAAT+GGG - chr1_4:14109283-14109302 None:intergenic 20.0%
!! TAATAGAAAATGAAGGAAAA+TGG - chr1_4:14109284-14109303 None:intergenic 20.0%
!!! ATCATTTTGGATTTTTTTGT+TGG - chr1_4:14109367-14109386 None:intergenic 20.0%
!!! ATCTTTAAGTGTTATCATTT+TGG - chr1_4:14109380-14109399 None:intergenic 20.0%
!! GTAATGATAAGTTTCTAATT+TGG + chr1_4:14110950-14110969 Msa0151780:intron 20.0%
!! TTCTAATTTGGTTAAATTGA+AGG + chr1_4:14110962-14110981 Msa0151780:intron 20.0%
!! AGTTATGTAACTATTATTGT+TGG + chr1_4:14111419-14111438 Msa0151780:intron 20.0%
!!! TTTTTTAAATATCGGAAAAG+TGG + chr1_4:14112125-14112144 Msa0151780:intron 20.0%
!! GAAATCTTTGTTAATTAAAG+TGG + chr1_4:14112149-14112168 Msa0151780:intron 20.0%
!! TTGTTAATTAAAGTGGTTAA+TGG + chr1_4:14112156-14112175 Msa0151780:intron 20.0%
!!! AATAAGTTTTATAACACTTG+AGG - chr1_4:14112263-14112282 None:intergenic 20.0%
!! AAAGAAGAATAAACAAAATG+AGG - chr1_4:14112483-14112502 None:intergenic 20.0%
!!! TGTTTATTCTTCTTTTTCTA+AGG + chr1_4:14112488-14112507 Msa0151780:intron 20.0%
!! ATTATATTTAGGTCTGTTTA+TGG + chr1_4:14112544-14112563 Msa0151780:intron 20.0%
!!! ACACATTCTAAAAATATAAG+TGG + chr1_4:14112874-14112893 Msa0151780:intron 20.0%
!!! CACATTCTAAAAATATAAGT+GGG + chr1_4:14112875-14112894 Msa0151780:intron 20.0%
!! CAAATCCCTATATATATATA+GGG + chr1_4:14113054-14113073 Msa0151780:intron 20.0%
!! AAATCCCTATATATATATAG+GGG + chr1_4:14113055-14113074 Msa0151780:intron 20.0%
!! AAGTTAATAAATACACCTTA+AGG + chr1_4:14113137-14113156 Msa0151780:intron 20.0%
!! TGAATCCTAAGTAAATTTAA+TGG + chr1_4:14113710-14113729 Msa0151780:intron 20.0%
!! GTATTCCATTAAATTTACTT+AGG - chr1_4:14113718-14113737 None:intergenic 20.0%
!!! ATATTATCATGTTTTGTGAT+AGG - chr1_4:14113872-14113891 None:intergenic 20.0%
!! ACAAAACATGATAATATTGA+AGG + chr1_4:14113875-14113894 Msa0151780:intron 20.0%
!! ATTATGAGATTGTTAACTTA+TGG + chr1_4:14113901-14113920 Msa0151780:intron 20.0%
!! AGTCAAATTATATCTAGAAA+TGG + chr1_4:14114545-14114564 Msa0151780:three_prime_UTR 20.0%
!! CATGATAATAATAGGTAAAA+AGG - chr1_4:14114664-14114683 None:intergenic 20.0%
! ATTTGTAATTGTAGAGTACA+AGG - chr1_4:14109056-14109075 None:intergenic 25.0%
!!! TTTTAGTGAAGTTTGTTGAA+TGG - chr1_4:14109340-14109359 None:intergenic 25.0%
! AAGATCATAGCAACATATAA+TGG - chr1_4:14109430-14109449 None:intergenic 25.0%
!! AATCTGAAGTTCATTTGATA+TGG - chr1_4:14109574-14109593 None:intergenic 25.0%
! CTAAAAATGGCAATTTAGAA+TGG + chr1_4:14109659-14109678 Msa0151780:CDS 25.0%
! AATTTAAATTGCACCTACAA+TGG + chr1_4:14110617-14110636 Msa0151780:intron 25.0%
! ATTTAAATTGCACCTACAAT+GGG + chr1_4:14110618-14110637 Msa0151780:intron 25.0%
! GGGGTTAATTATAGTTATAA+CGG + chr1_4:14110638-14110657 Msa0151780:intron 25.0%
! AATCAATGACTAATCATTGT+TGG - chr1_4:14110842-14110861 None:intergenic 25.0%
! TAATTTGGTTAAATTGAAGG+TGG + chr1_4:14110965-14110984 Msa0151780:intron 25.0%
! ACTTTATAATACCTACCTAA+AGG - chr1_4:14111266-14111285 None:intergenic 25.0%
! AAGAATTATTGAGGAGAAAT+TGG - chr1_4:14111571-14111590 None:intergenic 25.0%
! ATGTGATAGAAGAATTATTG+AGG - chr1_4:14111580-14111599 None:intergenic 25.0%
! TGGTAGTAAAGTAAAATGAA+TGG + chr1_4:14111674-14111693 Msa0151780:intron 25.0%
!! ATGATTGAATTTGAGAGTAT+GGG + chr1_4:14111708-14111727 Msa0151780:intron 25.0%
! GTATGAATATGAGAAAAGTA+TGG + chr1_4:14111734-14111753 Msa0151780:intron 25.0%
!! ATATGAGAAAAGTATGGATT+TGG + chr1_4:14111740-14111759 Msa0151780:intron 25.0%
!! TATGAGAAAAGTATGGATTT+GGG + chr1_4:14111741-14111760 Msa0151780:intron 25.0%
! AACAAACATCACCAATATAA+TGG - chr1_4:14111796-14111815 None:intergenic 25.0%
!! AGGTAACGTAGTTTAAAATT+GGG - chr1_4:14111892-14111911 None:intergenic 25.0%
!! AAGGTAACGTAGTTTAAAAT+TGG - chr1_4:14111893-14111912 None:intergenic 25.0%
! GTTTAAATTTGCAACTAAGA+CGG - chr1_4:14112193-14112212 None:intergenic 25.0%
! AAAAATGCGACACTTATTAT+GGG - chr1_4:14112320-14112339 None:intergenic 25.0%
! TAAAAATGCGACACTTATTA+TGG - chr1_4:14112321-14112340 None:intergenic 25.0%
! ACACCTTAATAAAAACTAGT+GGG - chr1_4:14112792-14112811 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG + chr1_4:14112835-14112854 Msa0151780:intron 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - chr1_4:14112940-14112959 None:intergenic 25.0%
! AAGTAGTTAAATACACCTTA+AGG + chr1_4:14112982-14113001 Msa0151780:intron 25.0%
! GCAAATCCCTATATATATAT+AGG + chr1_4:14113053-14113072 Msa0151780:intron 25.0%
! CAAACCCCTATATATATATA+GGG - chr1_4:14113062-14113081 None:intergenic 25.0%
! GCAAGTGAATAACTAAAAAA+TGG + chr1_4:14113269-14113288 Msa0151780:intron 25.0%
! TTCTTTATTCAGTGTCTATT+GGG - chr1_4:14113488-14113507 None:intergenic 25.0%
! TGTAGCTCATATAGTTAAAA+AGG - chr1_4:14113632-14113651 None:intergenic 25.0%
! TGTCAATAAGCATTTCTATT+TGG + chr1_4:14113769-14113788 Msa0151780:intron 25.0%
! AAAAACACCTATTCATACTT+TGG + chr1_4:14114207-14114226 Msa0151780:exon 25.0%
!! ATTTTTCTTTGTTGGAAACT+TGG - chr1_4:14114360-14114379 None:intergenic 25.0%
! AAGTTTCCAACAAAGAAAAA+TGG + chr1_4:14114359-14114378 Msa0151780:three_prime_UTR 25.0%
! AGTTTCCAACAAAGAAAAAT+GGG + chr1_4:14114360-14114379 Msa0151780:three_prime_UTR 25.0%
!!! AAATTCCCATTTTTCTTTGT+TGG - chr1_4:14114368-14114387 None:intergenic 25.0%
!! GAATTTGAGAAAAAGTTGAT+AGG + chr1_4:14114382-14114401 Msa0151780:three_prime_UTR 25.0%
! TCATCTTGGAATTTCTAATA+TGG - chr1_4:14114438-14114457 None:intergenic 25.0%
!!! ATACAAATGGTTGATAGAAA+GGG - chr1_4:14114573-14114592 None:intergenic 25.0%
!!! TATACAAATGGTTGATAGAA+AGG - chr1_4:14114574-14114593 None:intergenic 25.0%
!! TTTTATATGAAAATCGGTTG+AGG + chr1_4:14114595-14114614 Msa0151780:three_prime_UTR 25.0%
! TTATGTAGAGGAAAAGAAAT+TGG + chr1_4:14114624-14114643 Msa0151780:three_prime_UTR 25.0%
GTATAGAAACTAGAAAGAGA+AGG - chr1_4:14109127-14109146 None:intergenic 30.0%
! ACTCATTCTGTGCAAAATTT+TGG - chr1_4:14109205-14109224 None:intergenic 30.0%
! AGTTAGTTAACTAGGAGTAT+AGG - chr1_4:14109243-14109262 None:intergenic 30.0%
AAGGAAAATGGGAAAGAAAA+CGG - chr1_4:14109272-14109291 None:intergenic 30.0%
! GTTCATTTGATATGGATTGT+TGG - chr1_4:14109566-14109585 None:intergenic 30.0%
TGGACATTGTTCACTAAAAA+TGG + chr1_4:14109646-14109665 Msa0151780:CDS 30.0%
CCATACATAGCAATTAACAA+AGG - chr1_4:14109739-14109758 None:intergenic 30.0%
CCTTTGTTAATTGCTATGTA+TGG + chr1_4:14109736-14109755 Msa0151780:CDS 30.0%
TGATTATTCAGGTAGCTTAA+TGG + chr1_4:14109759-14109778 Msa0151780:CDS 30.0%
! CTTTTTCTTTTTGAATACCG+TGG + chr1_4:14109826-14109845 Msa0151780:CDS 30.0%
! AACCAAGACATTCCAATTTT+GGG + chr1_4:14110145-14110164 Msa0151780:CDS 30.0%
! CCATTTTCTTCGAAATTTGA+AGG - chr1_4:14110222-14110241 None:intergenic 30.0%
CCTTCAAATTTCGAAGAAAA+TGG + chr1_4:14110219-14110238 Msa0151780:CDS 30.0%
!! TTTTGATTCTGATTCTTCAC+AGG - chr1_4:14110339-14110358 None:intergenic 30.0%
GCTGATGAACATAATCAAAA+TGG + chr1_4:14110534-14110553 Msa0151780:CDS 30.0%
AATGGTGAAACCAATAACAA+AGG + chr1_4:14110552-14110571 Msa0151780:CDS 30.0%
! GAAACCAATAACAAAGGTAT+AGG + chr1_4:14110558-14110577 Msa0151780:intron 30.0%
! ATTGCCTATACCTTTGTTAT+TGG - chr1_4:14110565-14110584 None:intergenic 30.0%
! TAACAAAGGTATAGGCAATT+AGG + chr1_4:14110566-14110585 Msa0151780:intron 30.0%
TTTAAATTGCACCTACAATG+GGG + chr1_4:14110619-14110638 Msa0151780:intron 30.0%
ACTATAATTAACCCCATTGT+AGG - chr1_4:14110633-14110652 None:intergenic 30.0%
AGGTTTAATCTTAGAACCAA+TGG - chr1_4:14110795-14110814 None:intergenic 30.0%
TTAAACCTAGTATATTCCGA+AGG + chr1_4:14110807-14110826 Msa0151780:intron 30.0%
TTGAATAGGTGTTTGGATTA+CGG - chr1_4:14111213-14111232 None:intergenic 30.0%
TTGAGGAGAAATTGGATAAA+TGG - chr1_4:14111563-14111582 None:intergenic 30.0%
ACTCTCAAATTCAATCATGT+TGG - chr1_4:14111706-14111725 None:intergenic 30.0%
CATGATTGAATTTGAGAGTA+TGG + chr1_4:14111707-14111726 Msa0151780:intron 30.0%
! ATGAGAAAAGTATGGATTTG+GGG + chr1_4:14111742-14111761 Msa0151780:intron 30.0%
! AACATCACCAATATAATGGA+TGG - chr1_4:14111792-14111811 None:intergenic 30.0%
TCAACCACTATGGTTAATTA+GGG - chr1_4:14111956-14111975 None:intergenic 30.0%
TTCAACCACTATGGTTAATT+AGG - chr1_4:14111957-14111976 None:intergenic 30.0%
AACCATAGTGGTTGAAATAA+TGG + chr1_4:14111961-14111980 Msa0151780:intron 30.0%
TTCCATTATTTCAACCACTA+TGG - chr1_4:14111966-14111985 None:intergenic 30.0%
ATATCAACAAAAGGGTAAAG+TGG - chr1_4:14112384-14112403 None:intergenic 30.0%
!!! TAAGGTTTAGTTTTACAGCT+TGG + chr1_4:14112506-14112525 Msa0151780:intron 30.0%
! ATATATATATGGGGTTTGCT+AGG + chr1_4:14112761-14112780 Msa0151780:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG + chr1_4:14112786-14112805 Msa0151780:intron 30.0%
CACACCTTAATAAAAACTAG+TGG - chr1_4:14112793-14112812 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG - chr1_4:14112853-14112872 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + chr1_4:14112934-14112953 Msa0151780:intron 30.0%
! CACACCTTCTAAAAAATAAG+TGG - chr1_4:14112941-14112960 None:intergenic 30.0%
GCAAACCCCTATATATATAT+AGG - chr1_4:14113063-14113082 None:intergenic 30.0%
TTATAGCAACATACACCTTA+AGG - chr1_4:14113155-14113174 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + chr1_4:14113178-14113197 Msa0151780:intron 30.0%
! ACTCCTTCTAAAAAGTAAGT+GGG - chr1_4:14113243-14113262 None:intergenic 30.0%
! TACTCCTTCTAAAAAGTAAG+TGG - chr1_4:14113244-14113263 None:intergenic 30.0%
AAATGGTTAAATACACCCTA+AGG + chr1_4:14113286-14113305 Msa0151780:intron 30.0%
TCTTTATTCAGTGTCTATTG+GGG - chr1_4:14113487-14113506 None:intergenic 30.0%
CTTCTTTATTCAGTGTCTAT+TGG - chr1_4:14113489-14113508 None:intergenic 30.0%
GAAATTTACACACATCAAGT+AGG + chr1_4:14113549-14113568 Msa0151780:intron 30.0%
!! GAGAATGGATTAGCATATAT+TGG - chr1_4:14113795-14113814 None:intergenic 30.0%
! ACTTATGGTAATGAATGTTG+TGG + chr1_4:14113916-14113935 Msa0151780:intron 30.0%
! TACTCTTTTGCAAACACAAA+TGG - chr1_4:14113976-14113995 None:intergenic 30.0%
TTGAATTGCAGGGTTATATT+TGG + chr1_4:14114131-14114150 Msa0151780:intron 30.0%
ATGTAGTAGAGTAGAGTAAT+TGG - chr1_4:14114173-14114192 None:intergenic 30.0%
!! ATAGGTGTTTTTACAAACCA+AGG - chr1_4:14114199-14114218 None:intergenic 30.0%
CTATCTTCCAAAGTATGAAT+AGG - chr1_4:14114217-14114236 None:intergenic 30.0%
! GAAGTATTCTATTCTTCACA+AGG + chr1_4:14114261-14114280 Msa0151780:three_prime_UTR 30.0%
TATGGAGACATTAGCATTAT+GGG - chr1_4:14114420-14114439 None:intergenic 30.0%
ATATGGAGACATTAGCATTA+TGG - chr1_4:14114421-14114440 None:intergenic 30.0%
CCTTGAAAATTACATCATCT+TGG - chr1_4:14114452-14114471 None:intergenic 30.0%
! CCAAGATGATGTAATTTTCA+AGG + chr1_4:14114449-14114468 Msa0151780:three_prime_UTR 30.0%
AGACATAAAAGAGGAAAACA+TGG + chr1_4:14114504-14114523 Msa0151780:three_prime_UTR 30.0%
GACATAAAAGAGGAAAACAT+GGG + chr1_4:14114505-14114524 Msa0151780:three_prime_UTR 30.0%
TTGAGGAAGTAATTATGTAG+AGG + chr1_4:14114612-14114631 Msa0151780:three_prime_UTR 30.0%
!! AGGAGTACTTGTAATAGTAC+TGG - chr1_4:14109170-14109189 None:intergenic 35.0%
!! AATTTTGGTGACTACTCTGT+AGG - chr1_4:14109190-14109209 None:intergenic 35.0%
! AGTTAACTAGGAGTATAGGA+AGG - chr1_4:14109239-14109258 None:intergenic 35.0%
! GGTTGGTTAGTTAGTTAACT+AGG - chr1_4:14109251-14109270 None:intergenic 35.0%
AAAATGGGAAAGAAAACGGT+TGG - chr1_4:14109268-14109287 None:intergenic 35.0%
TTTATACCGGAACATTGATC+CGG - chr1_4:14109490-14109509 None:intergenic 35.0%
TTGAGATGAAGTGGAATGAA+AGG - chr1_4:14109543-14109562 None:intergenic 35.0%
TGCTAGTAGCACTTTCATTA+TGG + chr1_4:14109626-14109645 Msa0151780:CDS 35.0%
ATCAACACTTCCTAACACTT+TGG + chr1_4:14109702-14109721 Msa0151780:CDS 35.0%
ACTTCCTAACACTTTGGTTA+TGG + chr1_4:14109708-14109727 Msa0151780:CDS 35.0%
CTTCCTAACACTTTGGTTAT+GGG + chr1_4:14109709-14109728 Msa0151780:CDS 35.0%
! ATTCCCATAACCAAAGTGTT+AGG - chr1_4:14109715-14109734 None:intergenic 35.0%
GCTATGTATGGTGATTATTC+AGG + chr1_4:14109748-14109767 Msa0151780:CDS 35.0%
!! TAGCTTAATGGTTCAAGTTG+TGG + chr1_4:14109771-14109790 Msa0151780:CDS 35.0%
TGGTTCTTCAGTGTATCATT+TGG + chr1_4:14109791-14109810 Msa0151780:CDS 35.0%
TGATTAAAAGCTTAGCACCA+CGG - chr1_4:14109846-14109865 None:intergenic 35.0%
!! TGGTGCTAAGCTTTTAATCA+TGG + chr1_4:14109846-14109865 Msa0151780:CDS 35.0%
ATCGACCTTAAAGGAAACAA+TGG - chr1_4:14109896-14109915 None:intergenic 35.0%
!! TGTTTCCTTTAAGGTCGATT+CGG + chr1_4:14109897-14109916 Msa0151780:CDS 35.0%
GGAAGTTACATGTTACTGTT+AGG + chr1_4:14109980-14109999 Msa0151780:CDS 35.0%
! CAACCAAGACATTCCAATTT+TGG + chr1_4:14110144-14110163 Msa0151780:CDS 35.0%
! ACCAAGACATTCCAATTTTG+GGG + chr1_4:14110146-14110165 Msa0151780:CDS 35.0%
CAAATCATTAGCCCCAAAAT+TGG - chr1_4:14110160-14110179 None:intergenic 35.0%
AAATTTGAAGGTCTAGGAGT+TGG - chr1_4:14110210-14110229 None:intergenic 35.0%
TCTTCGAAATTTGAAGGTCT+AGG - chr1_4:14110216-14110235 None:intergenic 35.0%
TTAGTAGTAGAGGAGAATTC+CGG - chr1_4:14110315-14110334 None:intergenic 35.0%
AAGAGTTGCATATGTTTGTG+TGG + chr1_4:14110412-14110431 Msa0151780:CDS 35.0%
AATTGAAGGTGGTCAAGAAA+AGG + chr1_4:14110976-14110995 Msa0151780:intron 35.0%
GTCAAGAAAAGGAAATTGGT+GGG + chr1_4:14110987-14111006 Msa0151780:CDS 35.0%
TCAAGAAAAGGAAATTGGTG+GGG + chr1_4:14110988-14111007 Msa0151780:CDS 35.0%
! AAGAGGACTTCAAGTTCAAT+GGG + chr1_4:14111011-14111030 Msa0151780:CDS 35.0%
GTCTCATACTCATTATGGTT+TGG + chr1_4:14111176-14111195 Msa0151780:CDS 35.0%
! TCATACTCATTATGGTTTGG+AGG + chr1_4:14111179-14111198 Msa0151780:CDS 35.0%
ATGAGACTTGAATAGGTGTT+TGG - chr1_4:14111220-14111239 None:intergenic 35.0%
AACACCTATTCAAGTCTCAT+TGG + chr1_4:14111220-14111239 Msa0151780:CDS 35.0%
AAGACCAATGAGACTTGAAT+AGG - chr1_4:14111227-14111246 None:intergenic 35.0%
!! CAAGTCTCATTGGTCTTATT+TGG + chr1_4:14111230-14111249 Msa0151780:CDS 35.0%
!!! TTGTTGGTTTTCTTACATGC+AGG + chr1_4:14111435-14111454 Msa0151780:intron 35.0%
! CTATGTTTAGCTTAGGTAAG+TGG + chr1_4:14111528-14111547 Msa0151780:intron 35.0%
! TTGAATTTGAGAGTATGGGT+AGG + chr1_4:14111712-14111731 Msa0151780:intron 35.0%
! TGAGAAAAGTATGGATTTGG+GGG + chr1_4:14111743-14111762 Msa0151780:intron 35.0%
CTCATAGCCATCCATTATAT+TGG + chr1_4:14111782-14111801 Msa0151780:intron 35.0%
TAAAATTGGGTCCCATATGT+CGG - chr1_4:14111879-14111898 None:intergenic 35.0%
AGTAAGGAATCTTATAGCCA+TGG - chr1_4:14112618-14112637 None:intergenic 35.0%
ATGGCTATAAGATTCCTTAC+TGG + chr1_4:14112617-14112636 Msa0151780:CDS 35.0%
AACAATAGCTACATGTAGGA+GGG - chr1_4:14112690-14112709 None:intergenic 35.0%
TGTATGTTAGCAACTCCTAT+AGG + chr1_4:14112898-14112917 Msa0151780:intron 35.0%
! TTTTAGCAAGCTACACCTTA+AGG - chr1_4:14113000-14113019 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_4:14113021-14113040 Msa0151780:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_4:14113089-14113108 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr1_4:14113089-14113108 Msa0151780:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr1_4:14113021-14113040 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG + chr1_4:14113177-14113196 Msa0151780:intron 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - chr1_4:14113182-14113201 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr1_4:14113201-14113220 Msa0151780:intron 35.0%
GTGTTCTAGCAAATCCTATA+GGG + chr1_4:14113202-14113221 Msa0151780:intron 35.0%
TGTTCTAGCAAATCCTATAG+GGG + chr1_4:14113203-14113222 Msa0151780:intron 35.0%
!!! ACACCCACTTACTTTTTAGA+AGG + chr1_4:14113237-14113256 Msa0151780:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG - chr1_4:14113304-14113323 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG - chr1_4:14113305-14113324 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_4:14113021-14113040 Msa0151780:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_4:14113089-14113108 None:intergenic 35.0%
AGACACTGAATAAAGAAGAG+TGG + chr1_4:14113491-14113510 Msa0151780:intron 35.0%
CACATCAAGTAGGAAAAAAG+AGG + chr1_4:14113559-14113578 Msa0151780:intron 35.0%
TGAATGTTGTGGTTGACAAT+AGG + chr1_4:14113927-14113946 Msa0151780:intron 35.0%
GTAGAGTAGAGTAATTGGAA+GGG - chr1_4:14114168-14114187 None:intergenic 35.0%
AGTAGAGTAGAGTAATTGGA+AGG - chr1_4:14114169-14114188 None:intergenic 35.0%
TGGAAGATAGTAAACATGCA+TGG + chr1_4:14114227-14114246 Msa0151780:three_prime_UTR 35.0%
CTTGGAATGACAATTTCTGT+TGG - chr1_4:14114342-14114361 None:intergenic 35.0%
! AGAGAGCATGTAACATTGTA+AGG + chr1_4:14114480-14114499 Msa0151780:three_prime_UTR 35.0%
! GAGAGCATGTAACATTGTAA+GGG + chr1_4:14114481-14114500 Msa0151780:three_prime_UTR 35.0%
TTGTAAGGGAGACATAAAAG+AGG + chr1_4:14114495-14114514 Msa0151780:three_prime_UTR 35.0%
AAAAGAGGAAAACATGGGAA+CGG + chr1_4:14114510-14114529 Msa0151780:three_prime_UTR 35.0%
AAGGTGTGTCAGAGAAAGTA+GGG - chr1_4:14109108-14109127 None:intergenic 40.0%
GGTTTGTGAGACTAAGATGA+GGG - chr1_4:14109149-14109168 None:intergenic 40.0%
! TGGTTTGTGAGACTAAGATG+AGG - chr1_4:14109150-14109169 None:intergenic 40.0%
GTTGAATGGCATGTGAAGAA+AGG - chr1_4:14109326-14109345 None:intergenic 40.0%
TTACACTGTCTTAACAGCAG+TGG + chr1_4:14109402-14109421 Msa0151780:CDS 40.0%
GTTGCTATGATCTTAGCCTA+CGG + chr1_4:14109436-14109455 Msa0151780:CDS 40.0%
TATGATCTTAGCCTACGGTT+CGG + chr1_4:14109441-14109460 Msa0151780:CDS 40.0%
GTGAGAAAATCTTCCACCAA+CGG - chr1_4:14109468-14109487 None:intergenic 40.0%
! TTGGTGGAAGATTTTCTCAC+CGG + chr1_4:14109468-14109487 Msa0151780:CDS 40.0%
ATGAAGTGGAATGAAAGGAG+AGG - chr1_4:14109538-14109557 None:intergenic 40.0%
! GATTGTTGGTTGAGATGAAG+TGG - chr1_4:14109552-14109571 None:intergenic 40.0%
GGCTTCCATTGTTTCCTTTA+AGG + chr1_4:14109888-14109907 Msa0151780:CDS 40.0%
AACATCCGAATCGACCTTAA+AGG - chr1_4:14109905-14109924 None:intergenic 40.0%
TCGGATGTTATGTCGTTAGA+TGG + chr1_4:14109916-14109935 Msa0151780:CDS 40.0%
CTTGAAACTGATGCATCAGT+TGG + chr1_4:14109949-14109968 Msa0151780:CDS 40.0%
!! ATGCATCAGTTGGTGATGAT+GGG + chr1_4:14109959-14109978 Msa0151780:CDS 40.0%
TCAGCTCCAGTCAAATTTGA+CGG - chr1_4:14110051-14110070 None:intergenic 40.0%
GTTGAAATTAGACCCTCTTG+GGG - chr1_4:14110094-14110113 None:intergenic 40.0%
GGTTGAAATTAGACCCTCTT+GGG - chr1_4:14110095-14110114 None:intergenic 40.0%
TGGTTGAAATTAGACCCTCT+TGG - chr1_4:14110096-14110115 None:intergenic 40.0%
AGGGTCTAATTTCAACCATC+AGG + chr1_4:14110098-14110117 Msa0151780:CDS 40.0%
TCATGGAGTAAAACTCCTGA+TGG - chr1_4:14110116-14110135 None:intergenic 40.0%
! TCAGGAGTTTTACTCCATGA+TGG + chr1_4:14110116-14110135 Msa0151780:CDS 40.0%
! CAGGAGTTTTACTCCATGAT+GGG + chr1_4:14110117-14110136 Msa0151780:CDS 40.0%
!! TCTTGGTTGATAACCCATCA+TGG - chr1_4:14110133-14110152 None:intergenic 40.0%
!! TCCTAGATTCGGGTTTTATC+CGG + chr1_4:14110251-14110270 Msa0151780:CDS 40.0%
AACTGTGCCTAATTCGTATC+CGG + chr1_4:14110281-14110300 Msa0151780:CDS 40.0%
TAGTAGTAGAGGAGAATTCC+GGG - chr1_4:14110314-14110333 None:intergenic 40.0%
CTTCACAGGTTTAGTAGTAG+AGG - chr1_4:14110325-14110344 None:intergenic 40.0%
TTTGTCTGCAATTGAACCTG+CGG - chr1_4:14110378-14110397 None:intergenic 40.0%
CAGGTTCAATTGCAGACAAA+AGG + chr1_4:14110378-14110397 Msa0151780:CDS 40.0%
ATTGCAGACAAAAGGTTCTC+AGG + chr1_4:14110386-14110405 Msa0151780:CDS 40.0%
CCTCAATGTCTTCCGAAATT+CGG + chr1_4:14110470-14110489 Msa0151780:CDS 40.0%
CTTCGGATTGTTCCGAATTT+CGG - chr1_4:14110485-14110504 None:intergenic 40.0%
AAATTCGGAACAATCCGAAG+AGG + chr1_4:14110485-14110504 Msa0151780:CDS 40.0%
AATTCGGAACAATCCGAAGA+GGG + chr1_4:14110486-14110505 Msa0151780:CDS 40.0%
CAACGGAGATGTAGTTAAAG+AGG - chr1_4:14110675-14110694 None:intergenic 40.0%
CGGAGAGATATAGTACTCTT+AGG + chr1_4:14110712-14110731 Msa0151780:intron 40.0%
ATTCAAGCCTCTTGATCCAT+TGG + chr1_4:14110776-14110795 Msa0151780:intron 40.0%
CTTAGAACCAATGGATCAAG+AGG - chr1_4:14110786-14110805 None:intergenic 40.0%
CATGTCCTTCGGAATATACT+AGG - chr1_4:14110815-14110834 None:intergenic 40.0%
TTGTTGGAGTTCATGTCCTT+CGG - chr1_4:14110826-14110845 None:intergenic 40.0%
GGTGGTCAAGAAAAGGAAAT+TGG + chr1_4:14110983-14111002 Msa0151780:intron 40.0%
GGTCAAGAAAAGGAAATTGG+TGG + chr1_4:14110986-14111005 Msa0151780:CDS 40.0%
! GAAGAGGACTTCAAGTTCAA+TGG + chr1_4:14111010-14111029 Msa0151780:CDS 40.0%
! AGAGGACTTCAAGTTCAATG+GGG + chr1_4:14111012-14111031 Msa0151780:CDS 40.0%
GACACGTCTCATACTCATTA+TGG + chr1_4:14111171-14111190 Msa0151780:CDS 40.0%
TACCTACCTAAAGGCAACAA+GGG - chr1_4:14111257-14111276 None:intergenic 40.0%
ATACCTACCTAAAGGCAACA+AGG - chr1_4:14111258-14111277 None:intergenic 40.0%
!! TTGGTTTTCTTACATGCAGG+TGG + chr1_4:14111438-14111457 Msa0151780:intron 40.0%
! TGGTTTTCTTACATGCAGGT+GGG + chr1_4:14111439-14111458 Msa0151780:intron 40.0%
ATTTCCATACTGTCTGATGC+TGG + chr1_4:14111494-14111513 Msa0151780:CDS 40.0%
! GGAATGGCTATGTTTAGCTT+AGG + chr1_4:14111521-14111540 Msa0151780:CDS 40.0%
AAAATTGGGTCCCATATGTC+GGG - chr1_4:14111878-14111897 None:intergenic 40.0%
ACCTTCTTCTTCAGACACAA+TGG + chr1_4:14111908-14111927 Msa0151780:intron 40.0%
TCCATTGTGTCTGAAGAAGA+AGG - chr1_4:14111912-14111931 None:intergenic 40.0%
TTCTTCAGACACAATGGACA+AGG + chr1_4:14111914-14111933 Msa0151780:intron 40.0%
TCTTCAGACACAATGGACAA+GGG + chr1_4:14111915-14111934 Msa0151780:intron 40.0%
GCTACCCTAATTAACCATAG+TGG + chr1_4:14111949-14111968 Msa0151780:intron 40.0%
AAGACACACATAGTGAGACA+GGG - chr1_4:14112060-14112079 None:intergenic 40.0%
AAAGACACACATAGTGAGAC+AGG - chr1_4:14112061-14112080 None:intergenic 40.0%
AACCCAAGATCATTGCATGT+GGG + chr1_4:14112573-14112592 Msa0151780:CDS 40.0%
TTCCCACATGCAATGATCTT+GGG - chr1_4:14112578-14112597 None:intergenic 40.0%
ATTCCCACATGCAATGATCT+TGG - chr1_4:14112579-14112598 None:intergenic 40.0%
! TTCTGTTGCTTCATTTGCCA+TGG + chr1_4:14112598-14112617 Msa0151780:CDS 40.0%
GAACAATAGCTACATGTAGG+AGG - chr1_4:14112691-14112710 None:intergenic 40.0%
CCTGAACAATAGCTACATGT+AGG - chr1_4:14112694-14112713 None:intergenic 40.0%
CCTACATGTAGCTATTGTTC+AGG + chr1_4:14112691-14112710 Msa0151780:CDS 40.0%
AACTCCTATAGGCATTTGCT+AGG + chr1_4:14112909-14112928 Msa0151780:intron 40.0%
GTATCCTAGCAAATGCCTAT+AGG - chr1_4:14112916-14112935 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_4:14113020-14113039 Msa0151780:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_4:14113088-14113107 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr1_4:14113088-14113107 Msa0151780:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr1_4:14113020-14113039 None:intergenic 40.0%
! AAATCCTATAGGGGTTTGCT+AGG + chr1_4:14113212-14113231 Msa0151780:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_4:14113020-14113039 Msa0151780:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_4:14113088-14113107 None:intergenic 40.0%
!! GTAGGAAAAAAGAGGTACTG+CGG + chr1_4:14113567-14113586 Msa0151780:intron 40.0%
ACAAATGGAACAATCCCTTG+TGG - chr1_4:14113961-14113980 None:intergenic 40.0%
TGCTTACGCTGTACTAAGAA+TGG - chr1_4:14114013-14114032 None:intergenic 40.0%
CTACTCTACTACATTCTCCT+TGG + chr1_4:14114179-14114198 Msa0151780:CDS 40.0%
ATGTTACATGCTCTCTCTTG+AGG - chr1_4:14114476-14114495 None:intergenic 40.0%
AGGTGTGTCAGAGAAAGTAG+GGG - chr1_4:14109107-14109126 None:intergenic 45.0%
! GAAGGTGTGTCAGAGAAAGT+AGG - chr1_4:14109109-14109128 None:intergenic 45.0%
TTCTCACCGGATCAATGTTC+CGG + chr1_4:14109481-14109500 Msa0151780:CDS 45.0%
GTGGAATGAAAGGAGAGGTA+CGG - chr1_4:14109533-14109552 None:intergenic 45.0%
AAAGGAAACAATGGAAGCCG+CGG - chr1_4:14109887-14109906 None:intergenic 45.0%
!! GATGCATCAGTTGGTGATGA+TGG + chr1_4:14109958-14109977 Msa0151780:CDS 45.0%
GCCCCAAAATTGGAATGTCT+TGG - chr1_4:14110150-14110169 None:intergenic 45.0%
TCTGTCCAGTCTTCTTCTAG+AGG + chr1_4:14110183-14110202 Msa0151780:CDS 45.0%
! TTGGTCCTCTAGAAGAAGAC+TGG - chr1_4:14110191-14110210 None:intergenic 45.0%
GGTGCAAGTTCTCCTAGATT+CGG + chr1_4:14110240-14110259 Msa0151780:CDS 45.0%
GTGCAAGTTCTCCTAGATTC+GGG + chr1_4:14110241-14110260 Msa0151780:CDS 45.0%
! TTTGGCACCGGATACGAATT+AGG - chr1_4:14110291-14110310 None:intergenic 45.0%
AATTGAACCTGCGGTTGTTG+CGG - chr1_4:14110369-14110388 None:intergenic 45.0%
CCGAATTTCGGAAGACATTG+AGG - chr1_4:14110473-14110492 None:intergenic 45.0%
AAAGGAAATTGGTGGGGAAG+AGG + chr1_4:14110994-14111013 Msa0151780:CDS 45.0%
! CTTCAAGTTCAATGGGGTGA+AGG + chr1_4:14111018-14111037 Msa0151780:CDS 45.0%
AAGTTCAATGGGGTGAAGGT+AGG + chr1_4:14111022-14111041 Msa0151780:CDS 45.0%
AAGGTAGGAGAACAAGGAGA+AGG + chr1_4:14111037-14111056 Msa0151780:CDS 45.0%
ACCCAATGGACCTAACAAGT+TGG + chr1_4:14111060-14111079 Msa0151780:CDS 45.0%
!! CCCAACTTGTTAGGTCCATT+GGG - chr1_4:14111064-14111083 None:intergenic 45.0%
CCCAATGGACCTAACAAGTT+GGG + chr1_4:14111061-14111080 Msa0151780:CDS 45.0%
! GAATTCGAGCCCAACTTGTT+AGG - chr1_4:14111073-14111092 None:intergenic 45.0%
TTTGGTCCCTTGTTGCCTTT+AGG + chr1_4:14111248-14111267 Msa0151780:CDS 45.0%
AAGACCAGCATCAGACAGTA+TGG - chr1_4:14111501-14111520 None:intergenic 45.0%
! ATACTGTCTGATGCTGGTCT+TGG + chr1_4:14111500-14111519 Msa0151780:CDS 45.0%
AGCATAATGTCCCCGACATA+TGG + chr1_4:14111864-14111883 Msa0151780:intron 45.0%
GCATAATGTCCCCGACATAT+GGG + chr1_4:14111865-14111884 Msa0151780:intron 45.0%
AAATTGGGTCCCATATGTCG+GGG - chr1_4:14111877-14111896 None:intergenic 45.0%
CAACCCAAGATCATTGCATG+TGG + chr1_4:14112572-14112591 Msa0151780:CDS 45.0%
GTATCCTAGCAAACCCCTAT+AGG - chr1_4:14113219-14113238 None:intergenic 45.0%
TCCATTCTCTCTCGCTTCTT+TGG + chr1_4:14113806-14113825 Msa0151780:intron 45.0%
TCCAAAGAAGCGAGAGAGAA+TGG - chr1_4:14113810-14113829 None:intergenic 45.0%
AATAGGCTGCACTTCCACAA+GGG + chr1_4:14113944-14113963 Msa0151780:intron 45.0%
CTGTACTAAGAATGGCTGGA+TGG - chr1_4:14114005-14114024 None:intergenic 45.0%
TACGCTGTACTAAGAATGGC+TGG - chr1_4:14114009-14114028 None:intergenic 45.0%
!! ATATTAATAATGATTATTTA+AGG + chr1_4:14110898-14110917 Msa0151780:intron 5.0%
!!! TTATGTTTTTTTTTAAATAT+CGG + chr1_4:14112117-14112136 Msa0151780:intron 5.0%
!!! TTATTTATATTGATTTAAAT+AGG + chr1_4:14112278-14112297 Msa0151780:intron 5.0%
!! TATATATATATATATATATG+GGG + chr1_4:14112752-14112771 Msa0151780:intron 5.0%
GGTGTGTCAGAGAAAGTAGG+GGG - chr1_4:14109106-14109125 None:intergenic 50.0%
CGCGACAAAGCGGTTTATAC+CGG - chr1_4:14109503-14109522 None:intergenic 50.0%
CGGTATAAACCGCTTTGTCG+CGG + chr1_4:14109501-14109520 Msa0151780:CDS 50.0%
TTAGGAAGTCTAACGCGTCG+CGG + chr1_4:14109998-14110017 Msa0151780:CDS 50.0%
CCAGTCAAATTTGACGGTCG+CGG - chr1_4:14110045-14110064 None:intergenic 50.0%
GAAATTAGACCCTCTTGGGG+TGG - chr1_4:14110091-14110110 None:intergenic 50.0%
GCCGGATAAAACCCGAATCT+AGG - chr1_4:14110255-14110274 None:intergenic 50.0%
GTAGAGGAGAATTCCGGGTT+TGG - chr1_4:14110309-14110328 None:intergenic 50.0%
!!! CTCAAGTGCTTCACCGGTTT+TGG + chr1_4:14110437-14110456 Msa0151780:CDS 50.0%
!!! TCACCGGTTTTGGAAAGTGC+TGG + chr1_4:14110447-14110466 Msa0151780:CDS 50.0%
AGGCCAGCACTTTCCAAAAC+CGG - chr1_4:14110453-14110472 None:intergenic 50.0%
!! ACAATCCGAAGAGGGTGCTA+AGG + chr1_4:14110494-14110513 Msa0151780:CDS 50.0%
GATCTCCTTAGCACCCTCTT+CGG - chr1_4:14110502-14110521 None:intergenic 50.0%
!! AAGAGGGTGCTAAGGAGATC+AGG + chr1_4:14110502-14110521 Msa0151780:CDS 50.0%
TGCTAAGGAGATCAGGATGG+TGG + chr1_4:14110509-14110528 Msa0151780:CDS 50.0%
! TAAGGAGATCAGGATGGTGG+TGG + chr1_4:14110512-14110531 Msa0151780:CDS 50.0%
GAACAAGGAGAAGGACCCAA+TGG + chr1_4:14111046-14111065 Msa0151780:CDS 50.0%
!! GCCCAACTTGTTAGGTCCAT+TGG - chr1_4:14111065-14111084 None:intergenic 50.0%
TGTCGGAAAACTCATGCCTC+CGG + chr1_4:14111138-14111157 Msa0151780:CDS 50.0%
GTCCCTTGTTGCCTTTAGGT+AGG + chr1_4:14111252-14111271 Msa0151780:intron 50.0%
!! GTCTGATGCTGGTCTTGGAA+TGG + chr1_4:14111505-14111524 Msa0151780:CDS 50.0%
TCAGACACAATGGACAAGGG+TGG + chr1_4:14111918-14111937 Msa0151780:intron 50.0%
CCATAACTGCTGGACCAGTA+AGG - chr1_4:14112634-14112653 None:intergenic 50.0%
CCTTACTGGTCCAGCAGTTA+TGG + chr1_4:14112631-14112650 Msa0151780:CDS 50.0%
CAATAGGCTGCACTTCCACA+AGG + chr1_4:14113943-14113962 Msa0151780:intron 50.0%
GGAGCAGTTTCCAGAAACCG+CGG + chr1_4:14109867-14109886 Msa0151780:CDS 55.0%
ACAATGGAAGCCGCGGTTTC+TGG - chr1_4:14109880-14109899 None:intergenic 55.0%
CCGCGACCGTCAAATTTGAC+TGG + chr1_4:14110042-14110061 Msa0151780:CDS 55.0%
TTAGGCACAGTTTGCGCTGC+CGG - chr1_4:14110273-14110292 None:intergenic 55.0%
! TTCGTATCCGGTGCCAAACC+CGG + chr1_4:14110293-14110312 Msa0151780:CDS 55.0%
GAGAATTCCGGGTTTGGCAC+CGG - chr1_4:14110303-14110322 None:intergenic 55.0%
TTTGATGCCGCAACAACCGC+AGG + chr1_4:14110359-14110378 Msa0151780:CDS 55.0%
GTGGAGCTCAAGTGCTTCAC+CGG + chr1_4:14110431-14110450 Msa0151780:CDS 55.0%
GGGTGCTAAGGAGATCAGGA+TGG + chr1_4:14110506-14110525 Msa0151780:CDS 55.0%
GGGGTGAAGGTAGGAGAACA+AGG + chr1_4:14111031-14111050 Msa0151780:CDS 55.0%
GTTGGGCTCGAATTCAACGC+CGG + chr1_4:14111078-14111097 Msa0151780:CDS 55.0%
GACACTTGAATCCGCGACTC+CGG - chr1_4:14111122-14111141 None:intergenic 55.0%
GGAGTCGCGGATTCAAGTGT+CGG + chr1_4:14111121-14111140 Msa0151780:CDS 55.0%
GACACAATGGACAAGGGTGG+TGG + chr1_4:14111921-14111940 Msa0151780:intron 55.0%
GAAGCTGCTGCCATAACTGC+TGG - chr1_4:14112644-14112663 None:intergenic 55.0%
CTACATGTAGGAGGGTCCCA+CGG - chr1_4:14112682-14112701 None:intergenic 55.0%
!! TAGCCTACGGTTCGGTCCGT+TGG + chr1_4:14109449-14109468 Msa0151780:CDS 60.0%
CGGCGAAAACCGCGACAAAG+CGG - chr1_4:14109513-14109532 None:intergenic 60.0%
AGTCTCAGCTCCACCCCAAG+AGG + chr1_4:14110078-14110097 Msa0151780:CDS 60.0%
GTCTCAGCTCCACCCCAAGA+GGG + chr1_4:14110079-14110098 Msa0151780:CDS 60.0%
!! GTGGCTTTAGGGTGGAGCTC+CGG - chr1_4:14111100-14111119 None:intergenic 60.0%
GAGCTCCACCCTAAAGCCAC+CGG + chr1_4:14111100-14111119 Msa0151780:CDS 60.0%
ACTTGAATCCGCGACTCCGG+TGG - chr1_4:14111119-14111138 None:intergenic 60.0%
AGACGTGTCATGACGCTCGC+CGG - chr1_4:14111160-14111179 None:intergenic 60.0%
GCAGCAGCTTCTATCGCCGT+TGG + chr1_4:14112653-14112672 Msa0151780:CDS 60.0%
CCACCAACGGACCGAACCGT+AGG - chr1_4:14109455-14109474 None:intergenic 65.0%
!! CCTACGGTTCGGTCCGTTGG+TGG + chr1_4:14109452-14109471 Msa0151780:CDS 65.0%
GGAAGTCTAACGCGTCGCGG+AGG + chr1_4:14110001-14110020 Msa0151780:CDS 65.0%
!! CGACTCCGGTGGCTTTAGGG+TGG - chr1_4:14111108-14111127 None:intergenic 65.0%
! CCGCGACTCCGGTGGCTTTA+GGG - chr1_4:14111111-14111130 None:intergenic 65.0%
CCCTAAAGCCACCGGAGTCG+CGG + chr1_4:14111108-14111127 Msa0151780:CDS 65.0%
TCCGCGACTCCGGTGGCTTT+AGG - chr1_4:14111112-14111131 None:intergenic 65.0%
! TCTATCGCCGTTGGCCTCCG+TGG + chr1_4:14112662-14112681 Msa0151780:CDS 65.0%
! CTATCGCCGTTGGCCTCCGT+GGG + chr1_4:14112663-14112682 Msa0151780:CDS 65.0%
CATGTAGGAGGGTCCCACGG+AGG - chr1_4:14112679-14112698 None:intergenic 65.0%
CGTGTCATGACGCTCGCCGG+AGG - chr1_4:14111157-14111176 None:intergenic 70.0%
GAGGGTCCCACGGAGGCCAA+CGG - chr1_4:14112672-14112691 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 14109047 14114747 14109047 ID=Msa0151780;Name=Msa0151780
chr1_4 mRNA 14109047 14114747 14109047 ID=Msa0151780-mRNA-1;Parent=Msa0151780;Name=Msa0151780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=335|1|1|1|1|1|6|539|621
chr1_4 exon 14109047 14110573 14109047 ID=Msa0151780-mRNA-1:exon:5583;Parent=Msa0151780-mRNA-1
chr1_4 exon 14110984 14111269 14110984 ID=Msa0151780-mRNA-1:exon:5584;Parent=Msa0151780-mRNA-1
chr1_4 exon 14111457 14111542 14111457 ID=Msa0151780-mRNA-1:exon:5585;Parent=Msa0151780-mRNA-1
chr1_4 exon 14112555 14112712 14112555 ID=Msa0151780-mRNA-1:exon:5586;Parent=Msa0151780-mRNA-1
chr1_4 exon 14113949 14114025 14113949 ID=Msa0151780-mRNA-1:exon:5587;Parent=Msa0151780-mRNA-1
chr1_4 exon 14114142 14114747 14114142 ID=Msa0151780-mRNA-1:exon:5588;Parent=Msa0151780-mRNA-1
chr1_4 five_prime_UTR 14109047 14109381 14109047 ID=Msa0151780-mRNA-1:five_prime_utr;Parent=Msa0151780-mRNA-1
chr1_4 CDS 14109382 14110573 14109382 ID=Msa0151780-mRNA-1:cds;Parent=Msa0151780-mRNA-1
chr1_4 CDS 14110984 14111269 14110984 ID=Msa0151780-mRNA-1:cds;Parent=Msa0151780-mRNA-1
chr1_4 CDS 14111457 14111542 14111457 ID=Msa0151780-mRNA-1:cds;Parent=Msa0151780-mRNA-1
chr1_4 CDS 14112555 14112712 14112555 ID=Msa0151780-mRNA-1:cds;Parent=Msa0151780-mRNA-1
chr1_4 CDS 14113949 14114025 14113949 ID=Msa0151780-mRNA-1:cds;Parent=Msa0151780-mRNA-1
chr1_4 CDS 14114142 14114208 14114142 ID=Msa0151780-mRNA-1:cds;Parent=Msa0151780-mRNA-1
chr1_4 three_prime_UTR 14114209 14114747 14114209 ID=Msa0151780-mRNA-1:three_prime_utr;Parent=Msa0151780-mRNA-1
Gene Sequence

>Msa0151780

ATGATAACACTTAAAGATCTTTACACTGTCTTAACAGCAGTGGTTCCATTATATGTTGCTATGATCTTAGCCTACGGTTCGGTCCGTTGGTGGAAGATTTTCTCACCGGATCAATGTTCCGGTATAAACCGCTTTGTCGCGGTTTTCGCCGTACCTCTCCTTTCATTCCACTTCATCTCAACCAACAATCCATATCAAATGAACTTCAGATTCATAGCTGCAGACACACTTCAAAAAATCATCATGCTAGTAGCACTTTCATTATGGACATTGTTCACTAAAAATGGCAATTTAGAATGGATGATAACAATCTTTTCATTATCAACACTTCCTAACACTTTGGTTATGGGAATTCCTTTGTTAATTGCTATGTATGGTGATTATTCAGGTAGCTTAATGGTTCAAGTTGTGGTTCTTCAGTGTATCATTTGGTACACTCTTTTGCTTTTTCTTTTTGAATACCGTGGTGCTAAGCTTTTAATCATGGAGCAGTTTCCAGAAACCGCGGCTTCCATTGTTTCCTTTAAGGTCGATTCGGATGTTATGTCGTTAGATGGAAGAGATTTTCTTGAAACTGATGCATCAGTTGGTGATGATGGGAAGTTACATGTTACTGTTAGGAAGTCTAACGCGTCGCGGAGGTCATTTATGATGAATACTCCGCGACCGTCAAATTTGACTGGAGCTGAGATTTATAGTCTCAGCTCCACCCCAAGAGGGTCTAATTTCAACCATCAGGAGTTTTACTCCATGATGGGTTATCAACCAAGACATTCCAATTTTGGGGCTAATGATTTGTATTCTGTCCAGTCTTCTTCTAGAGGACCAACTCCTAGACCTTCAAATTTCGAAGAAAATGGTGCAAGTTCTCCTAGATTCGGGTTTTATCCGGCAGCGCAAACTGTGCCTAATTCGTATCCGGTGCCAAACCCGGAATTCTCCTCTACTACTAAACCTGTGAAGAATCAGAATCAAAATTTGATGCCGCAACAACCGCAGGTTCAATTGCAGACAAAAGGTTCTCAGGATAAAGAGTTGCATATGTTTGTGTGGAGCTCAAGTGCTTCACCGGTTTTGGAAAGTGCTGGCCTCAATGTCTTCCGAAATTCGGAACAATCCGAAGAGGGTGCTAAGGAGATCAGGATGGTGGTGGCTGATGAACATAATCAAAATGGTGAAACCAATAACAAAGGTGGTCAAGAAAAGGAAATTGGTGGGGAAGAGGACTTCAAGTTCAATGGGGTGAAGGTAGGAGAACAAGGAGAAGGACCCAATGGACCTAACAAGTTGGGCTCGAATTCAACGCCGGAGCTCCACCCTAAAGCCACCGGAGTCGCGGATTCAAGTGTCGGAAAACTCATGCCTCCGGCGAGCGTCATGACACGTCTCATACTCATTATGGTTTGGAGGAAACTTATCCGTAATCCAAACACCTATTCAAGTCTCATTGGTCTTATTTGGTCCCTTGTTGCCTTTAGGTGGGATGTTCATATGCCTAAAATAATAGAGAAATCAATTTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGTCTGTTTATGGCTCTTCAACCCAAGATCATTGCATGTGGGAATTCTGTTGCTTCATTTGCCATGGCTATAAGATTCCTTACTGGTCCAGCAGTTATGGCAGCAGCTTCTATCGCCGTTGGCCTCCGTGGGACCCTCCTACATGTAGCTATTGTTCAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTGCAAAAGAGTACAATGTCCATCCAGCCATTCTTAGTACAGCGGTTATATTTGGTATGTTAATAGCCCTTCCAATTACTCTACTCTACTACATTCTCCTTGGTTTGTAA
Protein sequence

>Msa0151780

MITLKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFISTNNPYQMNFRFIAADTLQKIIMLVALSLWTLFTKNGNLEWMITIFSLSTLPNTLVMGIPLLIAMYGDYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKVDSDVMSLDGRDFLETDASVGDDGKLHVTVRKSNASRRSFMMNTPRPSNLTGAEIYSLSSTPRGSNFNHQEFYSMMGYQPRHSNFGANDLYSVQSSSRGPTPRPSNFEENGASSPRFGFYPAAQTVPNSYPVPNPEFSSTTKPVKNQNQNLMPQQPQVQLQTKGSQDKELHMFVWSSSASPVLESAGLNVFRNSEQSEEGAKEIRMVVADEHNQNGETNNKGGQEKEIGGEEDFKFNGVKVGEQGEGPNGPNKLGSNSTPELHPKATGVADSSVGKLMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWDVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAIRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL*