AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046860 MtrunA17_Chr7g0274021 92.641 462 30 3 1 461 1 459 0.0 880
Msa0046860 MtrunA17_Chr1g0148851 32.181 463 276 12 9 454 5 446 2.68e-71 232
Msa0046860 MtrunA17_Chr8g0378151 25.293 427 264 14 29 439 32 419 3.68e-30 121
Msa0046860 MtrunA17_Chr2g0298091 25.843 445 270 18 16 439 19 424 2.77e-26 110
Msa0046860 MtrunA17_Chr2g0334001 24.638 414 272 13 39 436 33 422 5.63e-25 106
Msa0046860 MtrunA17_Chr4g0072041 28.022 364 237 11 8 355 13 367 2.89e-24 105
Msa0046860 MtrunA17_Chr8g0386141 26.377 345 214 11 31 354 28 353 6.43e-24 103
Msa0046860 MtrunA17_Chr8g0371821 27.083 336 202 9 41 355 35 348 3.71e-23 101
Msa0046860 MtrunA17_Chr4g0001861 24.818 411 276 13 39 436 33 423 9.54e-23 100
Msa0046860 MtrunA17_Chr1g0163441 25.612 449 266 20 16 439 18 423 1.98e-22 99.4
Msa0046860 MtrunA17_Chr3g0132831 24.887 442 279 17 16 439 18 424 3.26e-22 98.6
Msa0046860 MtrunA17_Chr3g0134091 27.638 398 258 11 61 445 65 445 2.88e-21 95.9
Msa0046860 MtrunA17_Chr4g0054081 25.791 411 269 13 46 433 45 442 4.23e-21 95.5
Msa0046860 MtrunA17_Chr7g0224391 23.224 366 249 9 6 354 12 362 7.17e-20 91.7
Msa0046860 MtrunA17_Chr3g0132001 24.932 369 247 13 1 354 6 359 1.47e-18 87.8
Msa0046860 MtrunA17_Chr3g0123061 25.169 445 294 17 6 446 2 411 6.69e-18 85.5
Msa0046860 MtrunA17_Chr8g0376901 25.749 334 209 11 8 324 2 313 5.00e-17 83.2
Msa0046860 MtrunA17_Chr5g0433641 24.845 322 204 11 45 345 46 350 1.31e-16 82.0
Msa0046860 MtrunA17_Chr3g0087401 24.633 341 223 10 31 348 23 352 1.19e-15 79.0
Msa0046860 MtrunA17_Chr3g0134101 24.688 401 252 12 61 446 83 448 1.43e-15 78.6
Msa0046860 MtrunA17_Chr4g0027071 23.256 344 237 10 31 355 33 368 2.48e-15 78.2
Msa0046860 MtrunA17_Chr3g0134041 26.364 330 220 11 38 352 40 361 4.54e-15 77.0
Msa0046860 MtrunA17_Chr7g0253501 21.164 378 265 9 9 361 2 371 5.56e-15 77.0
Msa0046860 MtrunA17_Chr5g0408911 22.430 321 225 9 44 354 55 361 1.26e-14 75.9
Msa0046860 MtrunA17_Chr7g0273721 23.978 367 236 12 43 391 45 386 2.10e-14 75.1
Msa0046860 MtrunA17_Chr6g0470591 24.126 286 193 9 64 333 71 348 3.31e-14 74.7
Msa0046860 MtrunA17_Chr2g0311401 22.591 301 207 6 149 436 5 292 4.40e-14 72.8
Msa0046860 MtrunA17_Chr3g0134061 23.358 411 271 14 61 446 65 456 5.13e-14 73.9
Msa0046860 MtrunA17_Chr3g0134121 25.500 400 266 12 61 446 66 447 9.54e-14 73.2
Msa0046860 MtrunA17_Chr8g0376891 24.852 338 207 12 8 324 2 313 1.88e-13 72.0
Msa0046860 MtrunA17_Chr5g0399681 26.887 212 132 8 44 241 47 249 7.11e-13 69.7
Msa0046860 MtrunA17_Chr5g0438681 22.699 326 218 10 8 319 2 307 8.81e-13 70.1
Msa0046860 MtrunA17_Chr7g0273761 24.691 324 203 10 45 345 418 723 1.04e-12 70.5
Msa0046860 MtrunA17_Chr1g0191081 24.062 320 216 11 27 331 35 342 1.39e-12 69.3
Msa0046860 MtrunA17_Chr4g0010351 26.829 328 184 14 60 352 51 357 1.68e-12 68.9
Msa0046860 MtrunA17_Chr7g0253531 21.220 377 266 10 9 361 2 371 1.71e-12 69.3
Msa0046860 MtrunA17_Chr7g0235531 22.102 371 255 9 8 354 3 363 3.72e-12 68.2
Msa0046860 MtrunA17_Chr3g0141851 22.186 311 223 7 57 353 54 359 4.43e-12 67.8
Msa0046860 MtrunA17_Chr7g0273781 22.188 320 229 10 37 345 72 382 4.50e-12 68.2
Msa0046860 MtrunA17_Chr5g0438701 23.030 330 220 10 8 324 2 310 6.15e-12 67.4
Msa0046860 MtrunA17_Chr1g0165681 23.077 325 219 8 37 345 38 347 7.65e-12 67.0
Msa0046860 MtrunA17_Chr7g0253541 21.609 435 273 12 35 429 35 441 1.92e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046860 AT4G29250.1 29.892 465 285 15 8 454 13 454 7.53e-57 195
Msa0046860 AT4G24510.1 27.045 440 265 22 16 439 13 412 2.52e-27 114
Msa0046860 AT3G23840.1 25.362 414 250 15 16 417 19 385 3.88e-24 104
Msa0046860 AT5G41040.1 26.706 337 219 10 31 351 54 378 2.34e-23 102
Msa0046860 AT5G41040.2 26.706 337 219 10 31 351 38 362 2.44e-23 102
Msa0046860 AT3G48720.1 24.779 339 231 10 29 354 28 355 2.00e-20 93.6
Msa0046860 AT4G13840.1 22.902 441 278 16 16 439 21 416 6.87e-20 92.0
Msa0046860 AT2G19070.1 24.661 369 250 7 9 358 4 363 1.02e-19 91.7
Msa0046860 AT5G63560.1 24.706 340 226 11 29 354 28 351 2.11e-19 90.5
Msa0046860 AT1G65450.1 24.274 379 251 9 5 360 14 379 3.43e-19 90.1
Msa0046860 AT5G07080.1 25.145 346 223 11 64 391 70 397 4.77e-19 89.7
Msa0046860 AT5G48930.1 23.902 410 279 13 40 436 34 423 1.28e-18 88.2
Msa0046860 AT5G02890.1 30.247 162 99 5 34 186 36 192 1.50e-17 84.3
Msa0046860 AT5G57840.1 22.273 440 300 13 21 439 12 430 6.50e-17 83.2
Msa0046860 AT1G24420.2 27.688 372 232 16 97 454 88 436 1.07e-16 82.4
Msa0046860 AT1G24420.1 27.688 372 232 16 97 454 88 436 1.07e-16 82.4
Msa0046860 AT1G24430.1 24.735 283 195 5 29 310 27 292 1.22e-15 79.3
Msa0046860 AT1G78990.1 25.532 329 214 11 43 356 46 358 1.79e-15 79.0
Msa0046860 AT5G16410.1 24.932 369 243 13 2 354 29 379 9.28e-15 76.6
Msa0046860 AT1G32910.1 24.923 325 212 12 47 354 50 359 8.59e-14 73.6
Msa0046860 AT1G27620.1 24.013 304 209 9 64 353 58 353 1.45e-13 72.8
Msa0046860 AT5G67150.1 24.684 316 188 11 64 348 61 357 3.50e-13 71.6
Msa0046860 AT5G23940.1 22.199 473 308 21 8 446 2 448 6.61e-12 67.8
Msa0046860 AT5G07870.1 24.057 424 267 14 54 448 62 459 6.36e-11 64.7
Msa0046860 AT5G07860.1 23.671 414 269 15 54 448 62 447 7.22e-11 64.7

Find 171 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTCCAACTGGATATTT+TGG 0.142431 1_1:+79295391 Msa0046860:CDS
ACTTCCTCTCAGCTCTATTT+TGG 0.152255 1_1:+79295278 Msa0046860:CDS
CTGTTTGAGCCAACAATTAT+TGG 0.196140 1_1:+79295908 Msa0046860:three_prime_UTR
AGGATGGTGGTACTGGTAAT+TGG 0.217298 1_1:+79293752 Msa0046860:CDS
TCTTTCCCATACATGCATTT+AGG 0.229198 1_1:-79295592 None:intergenic
GAAACTGAGGAAGGGAAATT+TGG 0.242297 1_1:+79295565 Msa0046860:CDS
TGGGGCTGTGGCGGTGAGTT+TGG 0.257423 1_1:-79295051 None:intergenic
GAAATGGAGAATGGTGAATT+AGG 0.275452 1_1:+79295454 Msa0046860:CDS
AGTTTGATTATGAATTTCTT+TGG 0.283260 1_1:-79295323 None:intergenic
ATGGTTTAGGTCATTTGAAT+TGG 0.295132 1_1:+79293651 Msa0046860:CDS
TTAATAAGTGTAGGCTTGTT+TGG 0.300216 1_1:+79295968 Msa0046860:three_prime_UTR
TGTTTGGAAGAATTAGTTAT+TGG 0.314360 1_1:+79295984 Msa0046860:three_prime_UTR
GGGGCTGTGGCGGTGAGTTT+GGG 0.330855 1_1:-79295050 None:intergenic
AAGAAAGGTGGGTTGGAAAT+GGG 0.334991 1_1:-79295070 None:intergenic
CATCATCATTCTTCAAATCA+TGG 0.335273 1_1:+79295026 Msa0046860:CDS
TAAAGTACCTGAATTCTAAA+AGG 0.341780 1_1:-79293925 None:intergenic
TCGATATACCCGACAATAAC+GGG 0.355602 1_1:+79293706 Msa0046860:CDS
AAATTAACGGGGACACAAAA+TGG 0.363890 1_1:-79293320 None:intergenic
TTATTACTTCTTTATGCAAA+TGG 0.365428 1_1:-79296390 None:intergenic
GAAGAAAGGTGGGTTGGAAA+TGG 0.366284 1_1:-79295071 None:intergenic
AAGTCAAATGGGGTGGCATT+AGG 0.368079 1_1:-79295259 None:intergenic
TTTACTAGAATGAAATTGTT+TGG 0.375244 1_1:+79296105 Msa0046860:three_prime_UTR
TCCAATGGAGGGTCCTTAAC+GGG 0.376598 1_1:-79296252 None:intergenic
ATAATTGTCCGTTCCTTAAC+GGG 0.380921 1_1:-79296292 None:intergenic
GGAACACCTAAATGCATGTA+TGG 0.381659 1_1:+79295586 Msa0046860:CDS
AAGGAGGAGGATGGTGGTAC+TGG 0.384784 1_1:+79293745 Msa0046860:CDS
GGTGAAGAGGTAGTATTGAT+TGG 0.386573 1_1:-79295097 None:intergenic
GTTTGATTATGAATTTCTTT+GGG 0.388732 1_1:-79295322 None:intergenic
GGATGGTGGTACTGGTAATT+GGG 0.389341 1_1:+79293753 Msa0046860:CDS
AAGGAACGGACAATTATATA+AGG 0.395956 1_1:+79296298 Msa0046860:three_prime_UTR
TATAATTGTCCGTTCCTTAA+CGG 0.399494 1_1:-79296293 None:intergenic
CCCAACCGGCCCGTTATTGT+CGG 0.402575 1_1:-79293715 None:intergenic
GTCAAGCAGACCAGTGAGTT+CGG 0.405126 1_1:+79293543 Msa0046860:CDS
AAAGAAGGTGGTGTAGCAAT+AGG 0.409784 1_1:+79294965 Msa0046860:CDS
CAGCCAGCAAGGATAATCTT+TGG 0.411817 1_1:-79295850 None:intergenic
CTCCAATGGAGGGTCCTTAA+CGG 0.418414 1_1:-79296253 None:intergenic
GTCGATATACCCGACAATAA+CGG 0.423205 1_1:+79293705 Msa0046860:CDS
TCAAGCAGACCAGTGAGTTC+GGG 0.424977 1_1:+79293544 Msa0046860:CDS
AATTTGGAATGTTGTTGGTT+AGG 0.426812 1_1:-79295123 None:intergenic
TTCCGGTAGGAGACTTAAAT+AGG 0.428247 1_1:+79296165 Msa0046860:three_prime_UTR
GAGCCAAAGATTATCCTTGC+TGG 0.432338 1_1:+79295847 Msa0046860:CDS
TGGCTATCATCTTCTGCTAC+TGG 0.433577 1_1:+79293841 Msa0046860:CDS
TAATTCACACACACTTGAAA+GGG 0.433647 1_1:+79295491 Msa0046860:CDS
GGTTGGAAATGGGGCTGTGG+CGG 0.435915 1_1:-79295060 None:intergenic
GTACTGGTAATTGGGAAGTT+AGG 0.436148 1_1:+79293761 Msa0046860:CDS
GTCTACACCCGTCAACTTGT+GGG 0.443630 1_1:-79293572 None:intergenic
ATAAAACCATCACTTCCAAC+TGG 0.443926 1_1:+79295382 Msa0046860:CDS
TGCTGGTGTTAGAGTCATAA+AGG 0.445154 1_1:+79293792 Msa0046860:CDS
CCTCCTTCTCTCGGCCCAAC+CGG 0.448689 1_1:-79293729 None:intergenic
TGTTGTAGCTAAATTCCGTT+TGG 0.449947 1_1:+79295940 Msa0046860:three_prime_UTR
TATTACTTCTTTATGCAAAT+GGG 0.451072 1_1:-79296389 None:intergenic
GTGGGTTGGAAATGGGGCTG+TGG 0.452154 1_1:-79295063 None:intergenic
CCGACAATAACGGGCCGGTT+GGG 0.453713 1_1:+79293715 Msa0046860:CDS
AAATAAAGTCTTCAATAGAA+TGG 0.455151 1_1:+79295527 Msa0046860:CDS
GAGCTGAGAGGAAGTCAAAT+GGG 0.457275 1_1:-79295270 None:intergenic
ACGCTTACACTGATTATAAT+CGG 0.458377 1_1:-79296058 None:intergenic
ACTACCCTGCCAATAATTGT+TGG 0.465832 1_1:-79295917 None:intergenic
ACAAGGACCACTCCCCGTTA+AGG 0.467855 1_1:+79296239 Msa0046860:three_prime_UTR
ACTATTTCAGAGGAAATTAA+CGG 0.471112 1_1:-79293333 None:intergenic
TGAGGCACAGCTTATTGCTT+GGG 0.472460 1_1:+79293870 Msa0046860:CDS
TTGAGCCAACAATTATTGGC+AGG 0.473229 1_1:+79295912 Msa0046860:three_prime_UTR
GGATGAATTTGGAATGTTGT+TGG 0.474167 1_1:-79295128 None:intergenic
TGAACTTGAGAATTTGAAAG+TGG 0.479483 1_1:-79295194 None:intergenic
TCAGACAATGATTCCCTCAA+TGG 0.481558 1_1:-79293676 None:intergenic
CTCTCTCCTGAGTAACTAAC+GGG 0.485509 1_1:+79296326 Msa0046860:three_prime_UTR
CTAAAAGGTGACCATGTGCT+AGG 0.487865 1_1:-79293910 None:intergenic
TTGATTGGAGTGAAGAAAGG+TGG 0.490101 1_1:-79295082 None:intergenic
CTATTTCAGAGGAAATTAAC+GGG 0.490404 1_1:-79293332 None:intergenic
ATTTGAATTGGATCCATTGA+GGG 0.492343 1_1:+79293663 Msa0046860:CDS
AAATATCCAGTTGGAAGTGA+TGG 0.495318 1_1:-79295388 None:intergenic
GGTCTACACCCGTCAACTTG+TGG 0.496901 1_1:-79293573 None:intergenic
CACCATCCTCCTCCTTCTCT+CGG 0.500291 1_1:-79293738 None:intergenic
CACTTATTAATTCATCCAAA+CGG 0.501081 1_1:-79295955 None:intergenic
ATGAGGCACAGCTTATTGCT+TGG 0.502747 1_1:+79293869 Msa0046860:CDS
TTAATTCACACACACTTGAA+AGG 0.506149 1_1:+79295490 Msa0046860:CDS
GATATTAGAGCATCTCCAAT+GGG 0.507222 1_1:+79296203 Msa0046860:three_prime_UTR
CATTTGAATTGGATCCATTG+AGG 0.507624 1_1:+79293662 Msa0046860:CDS
AGAAAGGTGGGTTGGAAATG+GGG 0.508550 1_1:-79295069 None:intergenic
GGGCCGGTTGGGCCGAGAGA+AGG 0.509409 1_1:+79293726 Msa0046860:CDS
AACTGTGATAGTAATGTTGA+AGG 0.511473 1_1:+79295777 Msa0046860:CDS
CCAACCGGCCCGTTATTGTC+GGG 0.512607 1_1:-79293714 None:intergenic
CCCCGTTAAGGACCCTCCAT+TGG 0.513158 1_1:+79296251 Msa0046860:three_prime_UTR
GTGTATGATAACTCATACCA+TGG 0.520501 1_1:-79293594 None:intergenic
GGAATGTTGTTGGTTAGGAT+TGG 0.521481 1_1:-79295118 None:intergenic
GGAGGGTCCTTAACGGGGAG+TGG 0.522087 1_1:-79296246 None:intergenic
GATTATCCTTGCTGGCTGTA+GGG 0.526008 1_1:+79295855 Msa0046860:CDS
ATTAGTTATTGGCATGGCAG+TGG 0.526180 1_1:+79295995 Msa0046860:three_prime_UTR
AAAATTGAAGAAATGGAGAA+TGG 0.526372 1_1:+79295445 Msa0046860:CDS
CGAACTATTTATAACAAACA+TGG 0.526568 1_1:-79293359 None:intergenic
GTATTGATTGGAGTGAAGAA+AGG 0.526703 1_1:-79295085 None:intergenic
AGAATGGTTTGAGTCACAAA+AGG 0.528973 1_1:+79295543 Msa0046860:CDS
CCCGACAATAACGGGCCGGT+TGG 0.531253 1_1:+79293714 Msa0046860:CDS
CCGGTTGGGCCGAGAGAAGG+AGG 0.533083 1_1:+79293729 Msa0046860:CDS
GGAGTGGTCCTTGTTAAGTA+AGG 0.533286 1_1:-79296230 None:intergenic
AGATTATCCTTGCTGGCTGT+AGG 0.533649 1_1:+79295854 Msa0046860:CDS
TGATTGGAGTGAAGAAAGGT+GGG 0.533702 1_1:-79295081 None:intergenic
ATAGTGATGCCTTCTTCAGA+TGG 0.535268 1_1:+79295742 Msa0046860:CDS
GCAAACCCTCCATCTGAAGA+AGG 0.535965 1_1:-79295751 None:intergenic
AGAGCTGAGAGGAAGTCAAA+TGG 0.537078 1_1:-79295271 None:intergenic
GGTAAGACCCACAAGTTGAC+GGG 0.538277 1_1:+79293565 Msa0046860:CDS
GTAATAAAATGTGTACTACT+TGG 0.539053 1_1:+79296365 Msa0046860:three_prime_UTR
AGCTCATGTTTCTTGTCGAG+TGG 0.541963 1_1:+79295693 Msa0046860:CDS
CGTTAAGGACCCTCCATTGG+AGG 0.542327 1_1:+79296254 Msa0046860:three_prime_UTR
TGGGTCTTACCCGAACTCAC+TGG 0.545145 1_1:-79293553 None:intergenic
GTGGGGAATGTGGACGGTGA+AGG 0.546274 1_1:+79295712 Msa0046860:CDS
CAGATAAATAGCTTCAAAGA+AGG 0.547152 1_1:+79294950 Msa0046860:intron
GCTCATGTTTCTTGTCGAGT+GGG 0.548354 1_1:+79295694 Msa0046860:CDS
GTTGGTTAGGATTGGTGAAG+AGG 0.549410 1_1:-79295110 None:intergenic
GTCAGAGACAGATCAGTGTA+AGG 0.552279 1_1:+79293492 Msa0046860:CDS
TGAGAATTTGAAAGTGGATG+TGG 0.559997 1_1:-79295188 None:intergenic
TGGAGTGAAGAAAGGTGGGT+TGG 0.561597 1_1:-79295077 None:intergenic
TGATGCCTTCTTCAGATGGA+GGG 0.561884 1_1:+79295746 Msa0046860:CDS
TGATATTAGAGCATCTCCAA+TGG 0.563836 1_1:+79296202 Msa0046860:three_prime_UTR
TTGGATGAATTAATAAGTGT+AGG 0.567829 1_1:+79295959 Msa0046860:three_prime_UTR
GAAGTTAGGTGTAATGATGC+TGG 0.568774 1_1:+79293775 Msa0046860:CDS
GTGAGACCCGTTAGTTACTC+AGG 0.569093 1_1:-79296332 None:intergenic
CTCATGTTTCTTGTCGAGTG+GGG 0.569487 1_1:+79295695 Msa0046860:CDS
GTTAGTTACTCAGGAGAGAG+AGG 0.570925 1_1:-79296323 None:intergenic
GACCTATTTAAGTCTCCTAC+CGG 0.573310 1_1:-79296167 None:intergenic
GGAAGAATTAGTTATTGGCA+TGG 0.577018 1_1:+79295989 Msa0046860:three_prime_UTR
AACACTGGATTCAAAACTAA+CGG 0.577037 1_1:+79293516 Msa0046860:CDS
GGGTAAGACCCACAAGTTGA+CGG 0.579828 1_1:+79293564 Msa0046860:CDS
ATTGAGTTCCCGTTAAGGAA+CGG 0.580857 1_1:+79296284 Msa0046860:three_prime_UTR
GTGATGCCTTCTTCAGATGG+AGG 0.582800 1_1:+79295745 Msa0046860:CDS
GGCCGAGAGAAGGAGGAGGA+TGG 0.583468 1_1:+79293736 Msa0046860:CDS
GAACACCTAAATGCATGTAT+GGG 0.584202 1_1:+79295587 Msa0046860:CDS
TCACAAAAGGAAACTGAGGA+AGG 0.584832 1_1:+79295556 Msa0046860:CDS
TAAAAGGTGACCATGTGCTA+GGG 0.586599 1_1:-79293909 None:intergenic
TAGAGTCATAAAGGCTAATG+TGG 0.586817 1_1:+79293801 Msa0046860:CDS
TCTCTCTCCTGAGTAACTAA+CGG 0.587505 1_1:+79296325 Msa0046860:three_prime_UTR
AGATCAGTGTAAGGTAACAC+TGG 0.594403 1_1:+79293501 Msa0046860:CDS
GACCATGTGCTAGGGTCATG+AGG 0.598936 1_1:-79293901 None:intergenic
CGAGAGAAGGAGGAGGATGG+TGG 0.600282 1_1:+79293739 Msa0046860:CDS
TGTGATAGTAATGTTGAAGG+AGG 0.600877 1_1:+79295780 Msa0046860:CDS
ATGTTGAAGGAGGAAGAACT+TGG 0.600995 1_1:+79295790 Msa0046860:CDS
AGACTTAAATAGGTCTCCTA+CGG 0.605396 1_1:+79296175 Msa0046860:three_prime_UTR
TTCTTGTCGAGTGGGGAATG+TGG 0.607119 1_1:+79295702 Msa0046860:CDS
ATAAATAGCTTCAAAGAAGG+TGG 0.607597 1_1:+79294953 Msa0046860:CDS
TGGATAGTACTATTGATGAA+TGG 0.608688 1_1:+79293821 Msa0046860:CDS
TATGTTTGATGAAGAAGTAA+TGG 0.610919 1_1:-79295164 None:intergenic
GTTGGGCCGAGAGAAGGAGG+AGG 0.619970 1_1:+79293732 Msa0046860:CDS
TTCTGCTACTGGATCTGATG+AGG 0.621739 1_1:+79293852 Msa0046860:CDS
CACAAAAGGAAACTGAGGAA+GGG 0.622438 1_1:+79295557 Msa0046860:CDS
AATTCACACACACTTGAAAG+GGG 0.623746 1_1:+79295492 Msa0046860:CDS
TGTCGAGTGGGGAATGTGGA+CGG 0.625379 1_1:+79295706 Msa0046860:CDS
TATAATCAGTGTAAGCGTGT+GGG 0.629877 1_1:+79296063 Msa0046860:three_prime_UTR
GATGAAGAAGTAATGGTCTG+TGG 0.630512 1_1:-79295157 None:intergenic
GCTCTAATATCACCTACCGT+AGG 0.630800 1_1:-79296191 None:intergenic
TGAGCCAACAATTATTGGCA+GGG 0.632053 1_1:+79295913 Msa0046860:three_prime_UTR
TTAAATAGGTCTCCTACGGT+AGG 0.634859 1_1:+79296179 Msa0046860:three_prime_UTR
GCGTTTCCAAAATATCCAGT+TGG 0.636325 1_1:-79295397 None:intergenic
TTATAATCAGTGTAAGCGTG+TGG 0.637530 1_1:+79296062 Msa0046860:three_prime_UTR
AACATGGAGTACTATTTCAG+AGG 0.639440 1_1:-79293343 None:intergenic
TAACGGGGACACAAAATGGA+GGG 0.642725 1_1:-79293316 None:intergenic
TTCGCAATATTAATGAAGCT+AGG 0.644020 1_1:+79293378 Msa0046860:five_prime_UTR
TGCCTCATGACCCTAGCACA+TGG 0.645951 1_1:+79293899 Msa0046860:CDS
CCAATGGAGGGTCCTTAACG+GGG 0.647949 1_1:-79296251 None:intergenic
ACTCGACAAGAAACATGAGC+TGG 0.648220 1_1:-79295691 None:intergenic
TTAGTTACTCAGGAGAGAGA+GGG 0.648431 1_1:-79296322 None:intergenic
TGAGAGGAAGTCAAATGGGG+TGG 0.650646 1_1:-79295266 None:intergenic
TGAGTCACAAAAGGAAACTG+AGG 0.655458 1_1:+79295552 Msa0046860:CDS
AACGGGGACACAAAATGGAG+GGG 0.665746 1_1:-79293315 None:intergenic
TTAACGGGGACACAAAATGG+AGG 0.666969 1_1:-79293317 None:intergenic
TATTAGAGCATCTCCAATGG+GGG 0.671314 1_1:+79296205 Msa0046860:three_prime_UTR
TATACCCGACAATAACGGGC+CGG 0.671866 1_1:+79293710 Msa0046860:CDS
AAGTTGACGGGTGTAGACCA+TGG 0.675286 1_1:+79293577 Msa0046860:CDS
AGCTGAGAGGAAGTCAAATG+GGG 0.678609 1_1:-79295269 None:intergenic
ATTAGAGCATCTCCAATGGG+GGG 0.701573 1_1:+79296206 Msa0046860:three_prime_UTR
ATATTAGAGCATCTCCAATG+GGG 0.709931 1_1:+79296204 Msa0046860:three_prime_UTR
GAGTCCAAAATAGAGCTGAG+AGG 0.726138 1_1:-79295282 None:intergenic
TATTTCAGAGGAAATTAACG+GGG 0.745503 1_1:-79293331 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACAAAAATGAAAAAAAA+TGG + chr1_1:79293632-79293651 Msa0046860:CDS 10.0%
!! ATTAAATCTTGTAATTTAAA+CGG - chr1_1:79294205-79294224 None:intergenic 10.0%
!! AAAATGAAAAAAAATGGTTT+AGG + chr1_1:79293638-79293657 Msa0046860:CDS 15.0%
!!! AGCAAAATAATATATTTTCA+TGG + chr1_1:79294586-79294605 Msa0046860:intron 15.0%
!!! TTTGTTTATTTACTCATTTT+TGG + chr1_1:79296136-79296155 Msa0046860:three_prime_UTR 15.0%
!! ATGATTGATACTTAAAATTG+TGG - chr1_1:79294056-79294075 None:intergenic 20.0%
!!! ATAGATTTTTTTTCCTACTT+TGG - chr1_1:79294103-79294122 None:intergenic 20.0%
!! AGAAAAGGAAGAAATTAAAT+TGG - chr1_1:79294508-79294527 None:intergenic 20.0%
!! ATTAAAATATACACCTCAAA+TGG - chr1_1:79294670-79294689 None:intergenic 20.0%
!! GTATAGATTAATTGAATTAG+TGG + chr1_1:79294871-79294890 Msa0046860:intron 20.0%
!!! ACATTTTTTGTTTTGGATTT+TGG - chr1_1:79295239-79295258 None:intergenic 20.0%
!! GTTTGATTATGAATTTCTTT+GGG - chr1_1:79295325-79295344 None:intergenic 20.0%
!! AGTTTGATTATGAATTTCTT+TGG - chr1_1:79295326-79295345 None:intergenic 20.0%
!! TTCACTAAAAATTGAAGAAA+TGG + chr1_1:79295438-79295457 Msa0046860:CDS 20.0%
!! AAATAAAGTCTTCAATAGAA+TGG + chr1_1:79295527-79295546 Msa0046860:CDS 20.0%
!! TTTACTAGAATGAAATTGTT+TGG + chr1_1:79296105-79296124 Msa0046860:three_prime_UTR 20.0%
! ACTATTTCAGAGGAAATTAA+CGG - chr1_1:79293336-79293355 None:intergenic 25.0%
! CGAACTATTTATAACAAACA+TGG - chr1_1:79293362-79293381 None:intergenic 25.0%
!! TAAAGTACCTGAATTCTAAA+AGG - chr1_1:79293928-79293947 None:intergenic 25.0%
!!! TTTTTTTTCCTACTTTGGTT+AGG - chr1_1:79294098-79294117 None:intergenic 25.0%
! GAAAATGGAGAAAAATTCAT+GGG + chr1_1:79294271-79294290 Msa0046860:intron 25.0%
! AAAAATAACGTGAAAGATCT+AGG - chr1_1:79294324-79294343 None:intergenic 25.0%
!!! TTTATTTTTTTCAACCTGAG+AGG + chr1_1:79294342-79294361 Msa0046860:intron 25.0%
! CATTTAGATTAAGAGAAAGA+TGG - chr1_1:79294387-79294406 None:intergenic 25.0%
! CATCTTTCTCTTAATCTAAA+TGG + chr1_1:79294385-79294404 Msa0046860:intron 25.0%
!! TGAAGACTATAATCTAAAAC+TGG + chr1_1:79294440-79294459 Msa0046860:intron 25.0%
! CAATAATGTAGATGTAAATC+AGG - chr1_1:79294758-79294777 None:intergenic 25.0%
! CTGATTTACATCTACATTAT+TGG + chr1_1:79294756-79294775 Msa0046860:intron 25.0%
! GATTAATTGAATTAGTGGTA+CGG + chr1_1:79294876-79294895 Msa0046860:intron 25.0%
! ATTAATTGAATTAGTGGTAC+GGG + chr1_1:79294877-79294896 Msa0046860:intron 25.0%
! TATGTTTGATGAAGAAGTAA+TGG - chr1_1:79295167-79295186 None:intergenic 25.0%
!!! CATTAGGACATTTTTTGTTT+TGG - chr1_1:79295246-79295265 None:intergenic 25.0%
! AAAATTGAAGAAATGGAGAA+TGG + chr1_1:79295445-79295464 Msa0046860:CDS 25.0%
! CACTTATTAATTCATCCAAA+CGG - chr1_1:79295958-79295977 None:intergenic 25.0%
! TTGGATGAATTAATAAGTGT+AGG + chr1_1:79295959-79295978 Msa0046860:three_prime_UTR 25.0%
! TGTTTGGAAGAATTAGTTAT+TGG + chr1_1:79295984-79296003 Msa0046860:three_prime_UTR 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr1_1:79296365-79296384 Msa0046860:three_prime_UTR 25.0%
TATTTCAGAGGAAATTAACG+GGG - chr1_1:79293334-79293353 None:intergenic 30.0%
CTATTTCAGAGGAAATTAAC+GGG - chr1_1:79293335-79293354 None:intergenic 30.0%
TTCGCAATATTAATGAAGCT+AGG + chr1_1:79293378-79293397 Msa0046860:five_prime_UTR 30.0%
AACACTGGATTCAAAACTAA+CGG + chr1_1:79293516-79293535 Msa0046860:CDS 30.0%
ATGGTTTAGGTCATTTGAAT+TGG + chr1_1:79293651-79293670 Msa0046860:CDS 30.0%
ATTTGAATTGGATCCATTGA+GGG + chr1_1:79293663-79293682 Msa0046860:CDS 30.0%
TGGATAGTACTATTGATGAA+TGG + chr1_1:79293821-79293840 Msa0046860:CDS 30.0%
!! AGTAAGTATGAGCTATTTTG+TGG + chr1_1:79293986-79294005 Msa0046860:intron 30.0%
GGAAAATGGAGAAAAATTCA+TGG + chr1_1:79294270-79294289 Msa0046860:intron 30.0%
! AATTGATAGTATACACGAGA+GGG - chr1_1:79294532-79294551 None:intergenic 30.0%
! AAATTGATAGTATACACGAG+AGG - chr1_1:79294533-79294552 None:intergenic 30.0%
AAAATATACACCTCAAATGG+AGG - chr1_1:79294667-79294686 None:intergenic 30.0%
TGATGAAGTCTCTAATGAAA+GGG - chr1_1:79294726-79294745 None:intergenic 30.0%
ATGATGAAGTCTCTAATGAA+AGG - chr1_1:79294727-79294746 None:intergenic 30.0%
! GAAGGTATGAAGTAATAAAC+TGG + chr1_1:79294915-79294934 Msa0046860:intron 30.0%
GTATGAAGTAATAAACTGGT+GGG + chr1_1:79294919-79294938 Msa0046860:intron 30.0%
TATGAAGTAATAAACTGGTG+GGG + chr1_1:79294920-79294939 Msa0046860:intron 30.0%
CAGATAAATAGCTTCAAAGA+AGG + chr1_1:79294950-79294969 Msa0046860:intron 30.0%
ATAAATAGCTTCAAAGAAGG+TGG + chr1_1:79294953-79294972 Msa0046860:CDS 30.0%
CATCATCATTCTTCAAATCA+TGG + chr1_1:79295026-79295045 Msa0046860:CDS 30.0%
! AATTTGGAATGTTGTTGGTT+AGG - chr1_1:79295126-79295145 None:intergenic 30.0%
TGAACTTGAGAATTTGAAAG+TGG - chr1_1:79295197-79295216 None:intergenic 30.0%
!!! TTTGTTTTGGATTTTGGAGA+GGG - chr1_1:79295233-79295252 None:intergenic 30.0%
!!! TTTTGTTTTGGATTTTGGAG+AGG - chr1_1:79295234-79295253 None:intergenic 30.0%
TTAATTCACACACACTTGAA+AGG + chr1_1:79295490-79295509 Msa0046860:CDS 30.0%
TAATTCACACACACTTGAAA+GGG + chr1_1:79295491-79295510 Msa0046860:CDS 30.0%
AACTGTGATAGTAATGTTGA+AGG + chr1_1:79295777-79295796 Msa0046860:CDS 30.0%
! TTAATAAGTGTAGGCTTGTT+TGG + chr1_1:79295968-79295987 Msa0046860:three_prime_UTR 30.0%
! ACGCTTACACTGATTATAAT+CGG - chr1_1:79296061-79296080 None:intergenic 30.0%
TATAATTGTCCGTTCCTTAA+CGG - chr1_1:79296296-79296315 None:intergenic 30.0%
AAGGAACGGACAATTATATA+AGG + chr1_1:79296298-79296317 Msa0046860:three_prime_UTR 30.0%
AAATTAACGGGGACACAAAA+TGG - chr1_1:79293323-79293342 None:intergenic 35.0%
! AACATGGAGTACTATTTCAG+AGG - chr1_1:79293346-79293365 None:intergenic 35.0%
GTGTATGATAACTCATACCA+TGG - chr1_1:79293597-79293616 None:intergenic 35.0%
CATTTGAATTGGATCCATTG+AGG + chr1_1:79293662-79293681 Msa0046860:CDS 35.0%
TAGAGTCATAAAGGCTAATG+TGG + chr1_1:79293801-79293820 Msa0046860:CDS 35.0%
!!! ATGGTCACCTTTTAGAATTC+AGG + chr1_1:79293918-79293937 Msa0046860:CDS 35.0%
! TTTTCTTGCCTAACCAAAGT+AGG + chr1_1:79294087-79294106 Msa0046860:intron 35.0%
CAACATGCATATCCCAAAAA+GGG + chr1_1:79294135-79294154 Msa0046860:intron 35.0%
TAGGAGAGACAAATCACTTA+AGG + chr1_1:79294239-79294258 Msa0046860:intron 35.0%
AGACAAATCACTTAAGGTTG+TGG + chr1_1:79294245-79294264 Msa0046860:intron 35.0%
AAATCACTTAAGGTTGTGGA+TGG + chr1_1:79294249-79294268 Msa0046860:intron 35.0%
TTAAGGTTGTGGATGGAAAA+TGG + chr1_1:79294256-79294275 Msa0046860:intron 35.0%
GATGAAGTCTCTAATGAAAG+GGG - chr1_1:79294725-79294744 None:intergenic 35.0%
!! GGGTGATTTGGTATTTAAGA+AGG + chr1_1:79294897-79294916 Msa0046860:intron 35.0%
GGTATGAAGTAATAAACTGG+TGG + chr1_1:79294918-79294937 Msa0046860:intron 35.0%
!! GTATTGATTGGAGTGAAGAA+AGG - chr1_1:79295088-79295107 None:intergenic 35.0%
! GGATGAATTTGGAATGTTGT+TGG - chr1_1:79295131-79295150 None:intergenic 35.0%
!!! TGTGGTTTTAGGGATGAATT+TGG - chr1_1:79295142-79295161 None:intergenic 35.0%
!! AGTAATGGTCTGTGGTTTTA+GGG - chr1_1:79295152-79295171 None:intergenic 35.0%
! AAGTAATGGTCTGTGGTTTT+AGG - chr1_1:79295153-79295172 None:intergenic 35.0%
TGAGAATTTGAAAGTGGATG+TGG - chr1_1:79295191-79295210 None:intergenic 35.0%
ATAAAACCATCACTTCCAAC+TGG + chr1_1:79295382-79295401 Msa0046860:CDS 35.0%
AAATATCCAGTTGGAAGTGA+TGG - chr1_1:79295391-79295410 None:intergenic 35.0%
! TCACTTCCAACTGGATATTT+TGG + chr1_1:79295391-79295410 Msa0046860:CDS 35.0%
GAAATGGAGAATGGTGAATT+AGG + chr1_1:79295454-79295473 Msa0046860:CDS 35.0%
AATTCACACACACTTGAAAG+GGG + chr1_1:79295492-79295511 Msa0046860:CDS 35.0%
AGAATGGTTTGAGTCACAAA+AGG + chr1_1:79295543-79295562 Msa0046860:CDS 35.0%
GAACACCTAAATGCATGTAT+GGG + chr1_1:79295587-79295606 Msa0046860:CDS 35.0%
TCTTTCCCATACATGCATTT+AGG - chr1_1:79295595-79295614 None:intergenic 35.0%
! AGAGTTAACTTTTGTCTGCA+TGG + chr1_1:79295612-79295631 Msa0046860:CDS 35.0%
TGTGATAGTAATGTTGAAGG+AGG + chr1_1:79295780-79295799 Msa0046860:CDS 35.0%
CTGTTTGAGCCAACAATTAT+TGG + chr1_1:79295908-79295927 Msa0046860:three_prime_UTR 35.0%
TGTTGTAGCTAAATTCCGTT+TGG + chr1_1:79295940-79295959 Msa0046860:three_prime_UTR 35.0%
GGAAGAATTAGTTATTGGCA+TGG + chr1_1:79295989-79296008 Msa0046860:three_prime_UTR 35.0%
TTATAATCAGTGTAAGCGTG+TGG + chr1_1:79296062-79296081 Msa0046860:three_prime_UTR 35.0%
TATAATCAGTGTAAGCGTGT+GGG + chr1_1:79296063-79296082 Msa0046860:three_prime_UTR 35.0%
AGACTTAAATAGGTCTCCTA+CGG + chr1_1:79296175-79296194 Msa0046860:three_prime_UTR 35.0%
! TGATATTAGAGCATCTCCAA+TGG + chr1_1:79296202-79296221 Msa0046860:three_prime_UTR 35.0%
! GATATTAGAGCATCTCCAAT+GGG + chr1_1:79296203-79296222 Msa0046860:three_prime_UTR 35.0%
! ATATTAGAGCATCTCCAATG+GGG + chr1_1:79296204-79296223 Msa0046860:three_prime_UTR 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG - chr1_1:79296266-79296285 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG - chr1_1:79296267-79296286 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG - chr1_1:79296270-79296289 None:intergenic 35.0%
GAAAAATTGAGTTCCCGTTA+AGG + chr1_1:79296279-79296298 Msa0046860:three_prime_UTR 35.0%
ATAATTGTCCGTTCCTTAAC+GGG - chr1_1:79296295-79296314 None:intergenic 35.0%
AGATCAGTGTAAGGTAACAC+TGG + chr1_1:79293501-79293520 Msa0046860:CDS 40.0%
TCAGACAATGATTCCCTCAA+TGG - chr1_1:79293679-79293698 None:intergenic 40.0%
GTCGATATACCCGACAATAA+CGG + chr1_1:79293705-79293724 Msa0046860:CDS 40.0%
TCGATATACCCGACAATAAC+GGG + chr1_1:79293706-79293725 Msa0046860:CDS 40.0%
! GTACTGGTAATTGGGAAGTT+AGG + chr1_1:79293761-79293780 Msa0046860:CDS 40.0%
GAAGTTAGGTGTAATGATGC+TGG + chr1_1:79293775-79293794 Msa0046860:CDS 40.0%
! TGCTGGTGTTAGAGTCATAA+AGG + chr1_1:79293792-79293811 Msa0046860:CDS 40.0%
TAAAAGGTGACCATGTGCTA+GGG - chr1_1:79293912-79293931 None:intergenic 40.0%
ACATAACACCTTGATTCTGC+TGG + chr1_1:79293963-79293982 Msa0046860:intron 40.0%
TACTTACTCCAGCAGAATCA+AGG - chr1_1:79293974-79293993 None:intergenic 40.0%
!!! CCTTTTTGGGATATGCATGT+TGG - chr1_1:79294137-79294156 None:intergenic 40.0%
CCAACATGCATATCCCAAAA+AGG + chr1_1:79294134-79294153 Msa0046860:intron 40.0%
TGCATATCCCAAAAAGGGAT+TGG + chr1_1:79294140-79294159 Msa0046860:intron 40.0%
!! AGAGCATCCAATCCCTTTTT+GGG - chr1_1:79294150-79294169 None:intergenic 40.0%
!!! AAGAGCATCCAATCCCTTTT+TGG - chr1_1:79294151-79294170 None:intergenic 40.0%
TATACACGAGAGGGAAGAAA+AGG - chr1_1:79294523-79294542 None:intergenic 40.0%
TTCCAAGTTTCCTCCATTTG+AGG + chr1_1:79294654-79294673 Msa0046860:intron 40.0%
AATTAGTGGTACGGGTGATT+TGG + chr1_1:79294885-79294904 Msa0046860:intron 40.0%
AAAGAAGGTGGTGTAGCAAT+AGG + chr1_1:79294965-79294984 Msa0046860:CDS 40.0%
!! AAGAAAGGTGGGTTGGAAAT+GGG - chr1_1:79295073-79295092 None:intergenic 40.0%
TGATTGGAGTGAAGAAAGGT+GGG - chr1_1:79295084-79295103 None:intergenic 40.0%
TTGATTGGAGTGAAGAAAGG+TGG - chr1_1:79295085-79295104 None:intergenic 40.0%
!! GGTGAAGAGGTAGTATTGAT+TGG - chr1_1:79295100-79295119 None:intergenic 40.0%
! GGAATGTTGTTGGTTAGGAT+TGG - chr1_1:79295121-79295140 None:intergenic 40.0%
GATGAAGAAGTAATGGTCTG+TGG - chr1_1:79295160-79295179 None:intergenic 40.0%
! ACTTCCTCTCAGCTCTATTT+TGG + chr1_1:79295278-79295297 Msa0046860:CDS 40.0%
GCGTTTCCAAAATATCCAGT+TGG - chr1_1:79295400-79295419 None:intergenic 40.0%
TGAGTCACAAAAGGAAACTG+AGG + chr1_1:79295552-79295571 Msa0046860:CDS 40.0%
TCACAAAAGGAAACTGAGGA+AGG + chr1_1:79295556-79295575 Msa0046860:CDS 40.0%
CACAAAAGGAAACTGAGGAA+GGG + chr1_1:79295557-79295576 Msa0046860:CDS 40.0%
GAAACTGAGGAAGGGAAATT+TGG + chr1_1:79295565-79295584 Msa0046860:CDS 40.0%
GGAACACCTAAATGCATGTA+TGG + chr1_1:79295586-79295605 Msa0046860:CDS 40.0%
! AACTTTTGTCTGCATGGAAG+AGG + chr1_1:79295618-79295637 Msa0046860:CDS 40.0%
ATAGTGATGCCTTCTTCAGA+TGG + chr1_1:79295742-79295761 Msa0046860:CDS 40.0%
ATGTTGAAGGAGGAAGAACT+TGG + chr1_1:79295790-79295809 Msa0046860:CDS 40.0%
TTGAGCCAACAATTATTGGC+AGG + chr1_1:79295912-79295931 Msa0046860:three_prime_UTR 40.0%
TGAGCCAACAATTATTGGCA+GGG + chr1_1:79295913-79295932 Msa0046860:three_prime_UTR 40.0%
ACTACCCTGCCAATAATTGT+TGG - chr1_1:79295920-79295939 None:intergenic 40.0%
ATTAGTTATTGGCATGGCAG+TGG + chr1_1:79295995-79296014 Msa0046860:three_prime_UTR 40.0%
TTCCGGTAGGAGACTTAAAT+AGG + chr1_1:79296165-79296184 Msa0046860:three_prime_UTR 40.0%
GACCTATTTAAGTCTCCTAC+CGG - chr1_1:79296170-79296189 None:intergenic 40.0%
TTAAATAGGTCTCCTACGGT+AGG + chr1_1:79296179-79296198 Msa0046860:three_prime_UTR 40.0%
! TATTAGAGCATCTCCAATGG+GGG + chr1_1:79296205-79296224 Msa0046860:three_prime_UTR 40.0%
ATTGAGTTCCCGTTAAGGAA+CGG + chr1_1:79296284-79296303 Msa0046860:three_prime_UTR 40.0%
TTAGTTACTCAGGAGAGAGA+GGG - chr1_1:79296325-79296344 None:intergenic 40.0%
TCTCTCTCCTGAGTAACTAA+CGG + chr1_1:79296325-79296344 Msa0046860:three_prime_UTR 40.0%
TAACGGGGACACAAAATGGA+GGG - chr1_1:79293319-79293338 None:intergenic 45.0%
TTAACGGGGACACAAAATGG+AGG - chr1_1:79293320-79293339 None:intergenic 45.0%
GTCAGAGACAGATCAGTGTA+AGG + chr1_1:79293492-79293511 Msa0046860:CDS 45.0%
!! AGGATGGTGGTACTGGTAAT+TGG + chr1_1:79293752-79293771 Msa0046860:CDS 45.0%
!! GGATGGTGGTACTGGTAATT+GGG + chr1_1:79293753-79293772 Msa0046860:CDS 45.0%
TGGCTATCATCTTCTGCTAC+TGG + chr1_1:79293841-79293860 Msa0046860:CDS 45.0%
TTCTGCTACTGGATCTGATG+AGG + chr1_1:79293852-79293871 Msa0046860:CDS 45.0%
ATGAGGCACAGCTTATTGCT+TGG + chr1_1:79293869-79293888 Msa0046860:CDS 45.0%
TGAGGCACAGCTTATTGCTT+GGG + chr1_1:79293870-79293889 Msa0046860:CDS 45.0%
CTAAAAGGTGACCATGTGCT+AGG - chr1_1:79293913-79293932 None:intergenic 45.0%
ATTGGATGCTCTTCCGTGAA+TGG + chr1_1:79294158-79294177 Msa0046860:intron 45.0%
TCACTAGACCTCTCCATTCA+CGG - chr1_1:79294174-79294193 None:intergenic 45.0%
CACCTCAAATGGAGGAAACT+TGG - chr1_1:79294659-79294678 None:intergenic 45.0%
!! AGAAAGGTGGGTTGGAAATG+GGG - chr1_1:79295072-79295091 None:intergenic 45.0%
!! GAAGAAAGGTGGGTTGGAAA+TGG - chr1_1:79295074-79295093 None:intergenic 45.0%
! GTTGGTTAGGATTGGTGAAG+AGG - chr1_1:79295113-79295132 None:intergenic 45.0%
AAGTCAAATGGGGTGGCATT+AGG - chr1_1:79295262-79295281 None:intergenic 45.0%
AGCTGAGAGGAAGTCAAATG+GGG - chr1_1:79295272-79295291 None:intergenic 45.0%
GAGCTGAGAGGAAGTCAAAT+GGG - chr1_1:79295273-79295292 None:intergenic 45.0%
AGAGCTGAGAGGAAGTCAAA+TGG - chr1_1:79295274-79295293 None:intergenic 45.0%
GAGTCCAAAATAGAGCTGAG+AGG - chr1_1:79295285-79295304 None:intergenic 45.0%
ACTCGACAAGAAACATGAGC+TGG - chr1_1:79295694-79295713 None:intergenic 45.0%
AGCTCATGTTTCTTGTCGAG+TGG + chr1_1:79295693-79295712 Msa0046860:CDS 45.0%
GCTCATGTTTCTTGTCGAGT+GGG + chr1_1:79295694-79295713 Msa0046860:CDS 45.0%
CTCATGTTTCTTGTCGAGTG+GGG + chr1_1:79295695-79295714 Msa0046860:CDS 45.0%
TGATGCCTTCTTCAGATGGA+GGG + chr1_1:79295746-79295765 Msa0046860:CDS 45.0%
GAGCCAAAGATTATCCTTGC+TGG + chr1_1:79295847-79295866 Msa0046860:CDS 45.0%
CAGCCAGCAAGGATAATCTT+TGG - chr1_1:79295853-79295872 None:intergenic 45.0%
! AGATTATCCTTGCTGGCTGT+AGG + chr1_1:79295854-79295873 Msa0046860:CDS 45.0%
! GATTATCCTTGCTGGCTGTA+GGG + chr1_1:79295855-79295874 Msa0046860:CDS 45.0%
!!! CTCATTTTTGGCGCTGTTTC+CGG + chr1_1:79296148-79296167 Msa0046860:three_prime_UTR 45.0%
GCTCTAATATCACCTACCGT+AGG - chr1_1:79296194-79296213 None:intergenic 45.0%
! ATTAGAGCATCTCCAATGGG+GGG + chr1_1:79296206-79296225 Msa0046860:three_prime_UTR 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr1_1:79296233-79296252 None:intergenic 45.0%
GTTAGTTACTCAGGAGAGAG+AGG - chr1_1:79296326-79296345 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG + chr1_1:79296326-79296345 Msa0046860:three_prime_UTR 45.0%
!! TTAATATTAATATTAAAACT+AGG + chr1_1:79294220-79294239 Msa0046860:intron 5.0%
AACGGGGACACAAAATGGAG+GGG - chr1_1:79293318-79293337 None:intergenic 50.0%
GTCAAGCAGACCAGTGAGTT+CGG + chr1_1:79293543-79293562 Msa0046860:CDS 50.0%
TCAAGCAGACCAGTGAGTTC+GGG + chr1_1:79293544-79293563 Msa0046860:CDS 50.0%
! GGGTAAGACCCACAAGTTGA+CGG + chr1_1:79293564-79293583 Msa0046860:CDS 50.0%
! GGTAAGACCCACAAGTTGAC+GGG + chr1_1:79293565-79293584 Msa0046860:CDS 50.0%
GTCTACACCCGTCAACTTGT+GGG - chr1_1:79293575-79293594 None:intergenic 50.0%
! AAGTTGACGGGTGTAGACCA+TGG + chr1_1:79293577-79293596 Msa0046860:CDS 50.0%
!! TATACCCGACAATAACGGGC+CGG + chr1_1:79293710-79293729 Msa0046860:CDS 50.0%
ATGCTCTTCCGTGAATGGAG+AGG + chr1_1:79294163-79294182 Msa0046860:intron 50.0%
GCACGAGATTAGATCCTCTC+AGG - chr1_1:79294359-79294378 None:intergenic 50.0%
TGGAGTGAAGAAAGGTGGGT+TGG - chr1_1:79295080-79295099 None:intergenic 50.0%
TGAGAGGAAGTCAAATGGGG+TGG - chr1_1:79295269-79295288 None:intergenic 50.0%
TTCTTGTCGAGTGGGGAATG+TGG + chr1_1:79295702-79295721 Msa0046860:CDS 50.0%
GTGATGCCTTCTTCAGATGG+AGG + chr1_1:79295745-79295764 Msa0046860:CDS 50.0%
GCAAACCCTCCATCTGAAGA+AGG - chr1_1:79295754-79295773 None:intergenic 50.0%
! GTTTTACCCTACAGCCAGCA+AGG - chr1_1:79295864-79295883 None:intergenic 50.0%
!! TTTTTGGCGCTGTTTCCGGT+AGG + chr1_1:79296152-79296171 Msa0046860:three_prime_UTR 50.0%
GTTAAGTAAGGACCCCCCAT+TGG - chr1_1:79296221-79296240 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG + chr1_1:79296222-79296241 Msa0046860:three_prime_UTR 50.0%
TCCAATGGAGGGTCCTTAAC+GGG - chr1_1:79296255-79296274 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG - chr1_1:79296256-79296275 None:intergenic 50.0%
GTGAGACCCGTTAGTTACTC+AGG - chr1_1:79296335-79296354 None:intergenic 50.0%
TGGGTCTTACCCGAACTCAC+TGG - chr1_1:79293556-79293575 None:intergenic 55.0%
GGTCTACACCCGTCAACTTG+TGG - chr1_1:79293576-79293595 None:intergenic 55.0%
CACCATCCTCCTCCTTCTCT+CGG - chr1_1:79293741-79293760 None:intergenic 55.0%
! AAGGAGGAGGATGGTGGTAC+TGG + chr1_1:79293745-79293764 Msa0046860:CDS 55.0%
TGCCTCATGACCCTAGCACA+TGG + chr1_1:79293899-79293918 Msa0046860:CDS 55.0%
GACCATGTGCTAGGGTCATG+AGG - chr1_1:79293904-79293923 None:intergenic 55.0%
TGTCGAGTGGGGAATGTGGA+CGG + chr1_1:79295706-79295725 Msa0046860:CDS 55.0%
ACAAGGACCACTCCCCGTTA+AGG + chr1_1:79296239-79296258 Msa0046860:three_prime_UTR 55.0%
CCAATGGAGGGTCCTTAACG+GGG - chr1_1:79296254-79296273 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG + chr1_1:79296254-79296273 Msa0046860:three_prime_UTR 55.0%
CCAACCGGCCCGTTATTGTC+GGG - chr1_1:79293717-79293736 None:intergenic 60.0%
CCCAACCGGCCCGTTATTGT+CGG - chr1_1:79293718-79293737 None:intergenic 60.0%
!! CCGACAATAACGGGCCGGTT+GGG + chr1_1:79293715-79293734 Msa0046860:CDS 60.0%
CGAGAGAAGGAGGAGGATGG+TGG + chr1_1:79293739-79293758 Msa0046860:CDS 60.0%
GGTTGGAAATGGGGCTGTGG+CGG - chr1_1:79295063-79295082 None:intergenic 60.0%
!! GTGGGTTGGAAATGGGGCTG+TGG - chr1_1:79295066-79295085 None:intergenic 60.0%
GTGGGGAATGTGGACGGTGA+AGG + chr1_1:79295712-79295731 Msa0046860:CDS 60.0%
CCCCGTTAAGGACCCTCCAT+TGG + chr1_1:79296251-79296270 Msa0046860:three_prime_UTR 60.0%
!! CCCGACAATAACGGGCCGGT+TGG + chr1_1:79293714-79293733 Msa0046860:CDS 65.0%
CCTCCTTCTCTCGGCCCAAC+CGG - chr1_1:79293732-79293751 None:intergenic 65.0%
GTTGGGCCGAGAGAAGGAGG+AGG + chr1_1:79293732-79293751 Msa0046860:CDS 65.0%
GGCCGAGAGAAGGAGGAGGA+TGG + chr1_1:79293736-79293755 Msa0046860:CDS 65.0%
GGGGCTGTGGCGGTGAGTTT+GGG - chr1_1:79295053-79295072 None:intergenic 65.0%
TGGGGCTGTGGCGGTGAGTT+TGG - chr1_1:79295054-79295073 None:intergenic 65.0%
GGAGGGTCCTTAACGGGGAG+TGG - chr1_1:79296249-79296268 None:intergenic 65.0%
CCGGTTGGGCCGAGAGAAGG+AGG + chr1_1:79293729-79293748 Msa0046860:CDS 70.0%
GGGCCGGTTGGGCCGAGAGA+AGG + chr1_1:79293726-79293745 Msa0046860:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79293295 79296406 79293295 ID=Msa0046860;Name=Msa0046860
chr1_1 mRNA 79293295 79296406 79293295 ID=Msa0046860-mRNA-1;Parent=Msa0046860;Name=Msa0046860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=195|1|1|1|1|1|2|518|461
chr1_1 exon 79293295 79293939 79293295 ID=Msa0046860-mRNA-1:exon:27357;Parent=Msa0046860-mRNA-1
chr1_1 exon 79294953 79296406 79294953 ID=Msa0046860-mRNA-1:exon:27358;Parent=Msa0046860-mRNA-1
chr1_1 five_prime_UTR 79293295 79293489 79293295 ID=Msa0046860-mRNA-1:five_prime_utr;Parent=Msa0046860-mRNA-1
chr1_1 CDS 79293490 79293939 79293490 ID=Msa0046860-mRNA-1:cds;Parent=Msa0046860-mRNA-1
chr1_1 CDS 79294953 79295888 79294953 ID=Msa0046860-mRNA-1:cds;Parent=Msa0046860-mRNA-1
chr1_1 three_prime_UTR 79295889 79296406 79295889 ID=Msa0046860-mRNA-1:three_prime_utr;Parent=Msa0046860-mRNA-1
Gene Sequence

>Msa0046860

ATGTCAGAGACAGATCAGTGTAAGGTAACACTGGATTCAAAACTAACGGTTGTGTCAAGCAGACCAGTGAGTTCGGGTAAGACCCACAAGTTGACGGGTGTAGACCATGGTATGAGTTATCATACACTGCATTTGATATTCTATTACAAAAATGAAAAAAAATGGTTTAGGTCATTTGAATTGGATCCATTGAGGGAATCATTGTCTGAAGTTTTGTCGATATACCCGACAATAACGGGCCGGTTGGGCCGAGAGAAGGAGGAGGATGGTGGTACTGGTAATTGGGAAGTTAGGTGTAATGATGCTGGTGTTAGAGTCATAAAGGCTAATGTGGATAGTACTATTGATGAATGGCTATCATCTTCTGCTACTGGATCTGATGAGGCACAGCTTATTGCTTGGGATGATATGCCTCATGACCCTAGCACATGGTCACCTTTTAGAATTCAGATAAATAGCTTCAAAGAAGGTGGTGTAGCAATAGGACTAAGTTTTAGTCACATGCTTTCTGATTTAACTTTTGCATCATCATTCTTCAAATCATGGACCCAAACTCACCGCCACAGCCCCATTTCCAACCCACCTTTCTTCACTCCAATCAATACTACCTCTTCACCAATCCTAACCAACAACATTCCAAATTCATCCCTAAAACCACAGACCATTACTTCTTCATCAAACATAGCCACATCCACTTTCAAATTCTCAAGTTCAATCATGAAACATTCCCTCTCCAAAATCCAAAACAAAAAATGTCCTAATGCCACCCCATTTGACTTCCTCTCAGCTCTATTTTGGACTCGTGTTGCTCACTTGAATCCCAAAGAAATTCATAATCAAACTCACTCTTTATCAATCTGCAGAGACTTCAGAAAGCTAATAAAACCATCACTTCCAACTGGATATTTTGGAAACGCGTTACATTTTTCAAATCTTTCACTAAAAATTGAAGAAATGGAGAATGGTGAATTAGGAAACGTAGCAAGTTTAATTCACACACACTTGAAAGGGGTTACAGATAAAGAAATAAAGTCTTCAATAGAATGGTTTGAGTCACAAAAGGAAACTGAGGAAGGGAAATTTGGAACACCTAAATGCATGTATGGGAAAGAGTTAACTTTTGTCTGCATGGAAGAGGAAGAGACAGCATCATTGTTGTATGAATCAATGTTTTGTGATAGTGAGAAACCAGCTCATGTTTCTTGTCGAGTGGGGAATGTGGACGGTGAAGGTTTGATTATAGTGATGCCTTCTTCAGATGGAGGGTTTGCAAGAACTGTGATAGTAATGTTGAAGGAGGAAGAACTTGGTAAATTATGCAATGATCAAGAAATATTGAAGCTTGAGCCAAAGATTATCCTTGCTGGCTGTAGGGTAAAACGTTGA
Protein sequence

>Msa0046860

MSETDQCKVTLDSKLTVVSSRPVSSGKTHKLTGVDHGMSYHTLHLIFYYKNEKKWFRSFELDPLRESLSEVLSIYPTITGRLGREKEEDGGTGNWEVRCNDAGVRVIKANVDSTIDEWLSSSATGSDEAQLIAWDDMPHDPSTWSPFRIQINSFKEGGVAIGLSFSHMLSDLTFASSFFKSWTQTHRHSPISNPPFFTPINTTSSPILTNNIPNSSLKPQTITSSSNIATSTFKFSSSIMKHSLSKIQNKKCPNATPFDFLSALFWTRVAHLNPKEIHNQTHSLSICRDFRKLIKPSLPTGYFGNALHFSNLSLKIEEMENGELGNVASLIHTHLKGVTDKEIKSSIEWFESQKETEEGKFGTPKCMYGKELTFVCMEEEETASLLYESMFCDSEKPAHVSCRVGNVDGEGLIIVMPSSDGGFARTVIVMLKEEELGKLCNDQEILKLEPKIILAGCRVKR*