AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129320 MtrunA17_Chr7g0274021 93.290 462 27 3 1 461 1 459 0.0 884
Msa1129320 MtrunA17_Chr1g0148851 32.397 463 275 12 9 454 5 446 1.01e-71 233
Msa1129320 MtrunA17_Chr8g0378151 25.527 427 263 14 29 439 32 419 9.73e-31 123
Msa1129320 MtrunA17_Chr2g0298091 26.067 445 269 18 16 439 19 424 1.64e-26 111
Msa1129320 MtrunA17_Chr4g0072041 28.297 364 236 11 8 355 13 367 1.07e-24 106
Msa1129320 MtrunA17_Chr8g0386141 26.667 345 213 11 31 354 28 353 2.83e-24 104
Msa1129320 MtrunA17_Chr2g0334001 24.155 414 274 13 39 436 33 422 4.28e-24 104
Msa1129320 MtrunA17_Chr1g0163441 25.835 449 265 20 16 439 18 423 8.47e-23 100
Msa1129320 MtrunA17_Chr3g0132831 25.113 442 278 17 16 439 18 424 1.28e-22 100
Msa1129320 MtrunA17_Chr8g0371821 26.488 336 204 9 41 355 35 348 2.81e-22 99.0
Msa1129320 MtrunA17_Chr4g0001861 24.331 411 278 13 39 436 33 423 5.53e-22 97.8
Msa1129320 MtrunA17_Chr3g0134091 27.638 398 258 11 61 445 65 445 3.16e-21 95.9
Msa1129320 MtrunA17_Chr4g0054081 25.122 410 273 11 46 433 45 442 6.95e-21 94.7
Msa1129320 MtrunA17_Chr7g0224391 25.683 366 240 11 6 354 12 362 8.66e-21 94.4
Msa1129320 MtrunA17_Chr3g0132001 25.203 369 246 13 1 354 6 359 5.15e-19 89.0
Msa1129320 MtrunA17_Chr3g0123061 24.379 443 300 14 6 446 2 411 5.47e-18 85.9
Msa1129320 MtrunA17_Chr8g0376901 25.749 334 209 11 8 324 2 313 4.70e-17 83.2
Msa1129320 MtrunA17_Chr3g0087401 24.927 341 222 10 31 348 23 352 3.93e-16 80.5
Msa1129320 MtrunA17_Chr4g0027071 24.058 345 233 12 31 355 33 368 1.71e-15 78.6
Msa1129320 MtrunA17_Chr3g0134101 24.688 401 252 12 61 446 83 448 2.35e-15 78.2
Msa1129320 MtrunA17_Chr7g0253501 21.429 378 264 10 9 361 2 371 5.71e-15 77.0
Msa1129320 MtrunA17_Chr3g0134041 26.061 330 221 11 38 352 40 361 8.73e-15 76.3
Msa1129320 MtrunA17_Chr6g0470591 24.126 286 193 9 64 333 71 348 3.31e-14 74.7
Msa1129320 MtrunA17_Chr5g0408911 21.495 321 228 8 44 354 55 361 5.59e-14 73.9
Msa1129320 MtrunA17_Chr3g0134061 23.278 421 279 14 51 446 55 456 6.13e-14 73.6
Msa1129320 MtrunA17_Chr7g0273721 23.706 367 237 12 43 391 45 386 7.59e-14 73.6
Msa1129320 MtrunA17_Chr3g0134121 24.880 418 246 13 61 446 66 447 8.57e-14 73.6
Msa1129320 MtrunA17_Chr2g0311401 22.259 301 208 6 149 436 5 292 1.10e-13 71.6
Msa1129320 MtrunA17_Chr8g0376891 24.852 338 207 12 8 324 2 313 1.17e-13 72.8
Msa1129320 MtrunA17_Chr5g0438681 23.006 326 217 10 8 319 2 307 3.21e-13 71.2
Msa1129320 MtrunA17_Chr5g0399681 28.095 210 129 7 45 241 49 249 3.51e-13 70.9
Msa1129320 MtrunA17_Chr1g0191081 24.062 320 216 11 27 331 35 342 1.12e-12 69.7
Msa1129320 MtrunA17_Chr7g0253531 21.485 377 265 11 9 361 2 371 1.58e-12 69.3
Msa1129320 MtrunA17_Chr4g0010351 26.829 328 184 14 60 352 51 357 1.92e-12 68.6
Msa1129320 MtrunA17_Chr7g0273761 24.062 320 210 9 45 345 418 723 3.36e-12 68.9
Msa1129320 MtrunA17_Chr5g0438701 23.030 330 220 10 8 324 2 310 5.99e-12 67.4
Msa1129320 MtrunA17_Chr3g0141851 22.186 311 223 7 57 353 54 359 6.49e-12 67.4
Msa1129320 MtrunA17_Chr1g0165681 22.866 328 216 9 37 345 38 347 6.52e-12 67.4
Msa1129320 MtrunA17_Chr7g0235531 21.842 380 245 10 8 354 3 363 2.08e-11 65.9
Msa1129320 MtrunA17_Chr7g0253541 21.921 406 253 11 64 429 60 441 3.94e-11 65.1
Msa1129320 MtrunA17_Chr8g0376911 22.074 299 196 9 27 309 22 299 7.44e-11 63.9
Msa1129320 MtrunA17_Chr4g0010331 25.937 347 222 15 22 348 15 346 9.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129320 AT4G29250.1 29.892 465 285 15 8 454 13 454 4.10e-57 196
Msa1129320 AT4G24510.1 27.314 443 260 23 16 439 13 412 2.08e-27 114
Msa1129320 AT3G23840.1 25.604 414 249 15 16 417 19 385 1.82e-24 105
Msa1129320 AT5G41040.2 27.300 337 217 10 31 351 38 362 2.74e-24 105
Msa1129320 AT5G41040.1 27.300 337 217 10 31 351 54 378 2.97e-24 105
Msa1129320 AT3G48720.1 25.074 339 230 10 29 354 28 355 7.92e-21 95.1
Msa1129320 AT4G13840.1 23.356 441 276 16 16 439 21 416 1.16e-20 94.4
Msa1129320 AT2G19070.1 24.932 369 249 7 9 358 4 363 3.21e-20 93.2
Msa1129320 AT5G63560.1 25.000 340 225 11 29 354 28 351 1.67e-19 90.9
Msa1129320 AT1G65450.1 24.011 379 252 9 5 360 14 379 5.13e-19 89.7
Msa1129320 AT5G07080.1 24.855 346 224 11 64 391 70 397 1.08e-18 88.6
Msa1129320 AT5G57840.1 22.727 440 298 13 21 439 12 430 6.90e-18 86.3
Msa1129320 AT5G48930.1 23.415 410 281 13 40 436 34 423 8.06e-18 85.9
Msa1129320 AT5G02890.1 30.247 162 99 5 34 186 36 192 2.57e-17 83.6
Msa1129320 AT1G24420.2 27.913 369 235 16 97 454 88 436 1.16e-16 82.4
Msa1129320 AT1G24420.1 27.913 369 235 16 97 454 88 436 1.16e-16 82.4
Msa1129320 AT1G24430.1 24.382 283 196 5 29 310 27 292 3.04e-15 78.2
Msa1129320 AT1G78990.1 24.540 326 221 10 43 356 46 358 9.08e-15 76.6
Msa1129320 AT5G16410.1 24.390 369 245 13 2 354 29 379 5.24e-14 74.3
Msa1129320 AT1G27620.1 23.856 306 207 9 64 353 58 353 1.09e-13 73.2
Msa1129320 AT1G32910.1 24.675 308 202 11 64 354 65 359 3.87e-13 71.6
Msa1129320 AT5G67150.1 24.684 316 188 11 64 348 61 357 4.07e-13 71.6
Msa1129320 AT5G23940.1 22.622 473 306 21 8 446 2 448 7.47e-13 70.9
Msa1129320 AT5G07870.1 24.057 424 267 14 54 448 62 459 6.59e-11 64.7
Msa1129320 AT5G07860.1 23.671 414 269 15 54 448 62 447 9.93e-11 63.9

Find 174 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCTCTCAGCTCTATTT+TGG 0.152255 7_3:+81322356 Msa1129320:CDS
TCACTCCCAACTGGATATTT+TGG 0.171448 7_3:+81322469 Msa1129320:CDS
CTGTTTGAGCCAACAATTAT+TGG 0.196140 7_3:+81322986 Msa1129320:three_prime_UTR
AGGATGGTGGTACTGGTAAT+TGG 0.217298 7_3:+81320855 Msa1129320:CDS
TCTTTCCCATACATGCATTT+AGG 0.229198 7_3:-81322670 None:intergenic
GAAACTGAGGAAGGGAAATT+TGG 0.242297 7_3:+81322643 Msa1129320:CDS
TGGGGCTGTGGCGGTGAGTT+TGG 0.257423 7_3:-81322129 None:intergenic
GAAATGGAGAATGGTGAATT+AGG 0.275452 7_3:+81322532 Msa1129320:CDS
AGTTTGATTATGAATTTCTT+TGG 0.283260 7_3:-81322401 None:intergenic
ATGGTTTAGGTCATTTGAAT+TGG 0.295132 7_3:+81320754 Msa1129320:CDS
TTAATAAGTGTAGGCTTGTT+TGG 0.300216 7_3:+81323046 Msa1129320:three_prime_UTR
TGTTTGGAAGAATTAGTTAT+TGG 0.314360 7_3:+81323062 Msa1129320:three_prime_UTR
GGGGCTGTGGCGGTGAGTTT+GGG 0.330855 7_3:-81322128 None:intergenic
AAGAAAGGTGGGTTGGAAAT+GGG 0.334991 7_3:-81322148 None:intergenic
CATCATCATTCTTCAAATCA+TGG 0.335273 7_3:+81322104 Msa1129320:CDS
TAAAGTACCTGAATTCTAAA+AGG 0.341780 7_3:-81321028 None:intergenic
TCGATATACCCGACAATAAC+GGG 0.355602 7_3:+81320809 Msa1129320:CDS
AAATTAACGGGGACACAAAA+TGG 0.363890 7_3:-81320423 None:intergenic
GAAGAAAGGTGGGTTGGAAA+TGG 0.366284 7_3:-81322149 None:intergenic
AAGTCAAATGGGGTGGCATT+AGG 0.368079 7_3:-81322337 None:intergenic
TTTACTAGAATGAAATTGTT+TGG 0.375244 7_3:+81323183 Msa1129320:three_prime_UTR
TCCAATGGAGGGTCCTTAAC+GGG 0.376598 7_3:-81323330 None:intergenic
ATAATTGTCCGTTCCTTAAC+GGG 0.380921 7_3:-81323370 None:intergenic
GGAACACCTAAATGCATGTA+TGG 0.381659 7_3:+81322664 Msa1129320:CDS
AAGGAGGAGGATGGTGGTAC+TGG 0.384784 7_3:+81320848 Msa1129320:CDS
GGTGAAGAGGTAGTATTGAT+TGG 0.386573 7_3:-81322175 None:intergenic
GTTTGATTATGAATTTCTTT+GGG 0.388732 7_3:-81322400 None:intergenic
GGATGGTGGTACTGGTAATT+GGG 0.389341 7_3:+81320856 Msa1129320:CDS
AAGGAACGGACAATTATATA+AGG 0.395956 7_3:+81323376 Msa1129320:three_prime_UTR
TATAATTGTCCGTTCCTTAA+CGG 0.399494 7_3:-81323371 None:intergenic
CCCAACCGGCCCGTTATTGT+CGG 0.402575 7_3:-81320818 None:intergenic
GTCAAGCAGACCAGTGAGTT+CGG 0.405126 7_3:+81320646 Msa1129320:CDS
AAAGAAGGTGGTGTAGCAAT+AGG 0.409784 7_3:+81322043 Msa1129320:CDS
CAGCCAGCAAGGATAATCTT+TGG 0.411817 7_3:-81322928 None:intergenic
CTCCAATGGAGGGTCCTTAA+CGG 0.418414 7_3:-81323331 None:intergenic
TTCCGGTAGGAGACTTAAAT+AGG 0.422742 7_3:+81323243 Msa1129320:three_prime_UTR
GTCGATATACCCGACAATAA+CGG 0.423205 7_3:+81320808 Msa1129320:CDS
TCAAGCAGACCAGTGAGTTC+GGG 0.424977 7_3:+81320647 Msa1129320:CDS
AATTTGGAATGTTGTTGGTT+AGG 0.426812 7_3:-81322201 None:intergenic
GAGCCAAAGATTATCCTTGC+TGG 0.432338 7_3:+81322925 Msa1129320:CDS
TGGCTATCATCTTCTGCTAC+TGG 0.433577 7_3:+81320944 Msa1129320:CDS
TAATTCACACACACTTGAAA+GGG 0.433647 7_3:+81322569 Msa1129320:CDS
GGTTGGAAATGGGGCTGTGG+CGG 0.435915 7_3:-81322138 None:intergenic
GTACTGGTAATTGGGAAGTT+AGG 0.436148 7_3:+81320864 Msa1129320:CDS
GTCTACACCCGTCAACTTGT+GGG 0.443630 7_3:-81320675 None:intergenic
ATAAAACCATCACTCCCAAC+TGG 0.443926 7_3:+81322460 Msa1129320:CDS
TGCTGGTGTTAGAGTCATAA+AGG 0.445154 7_3:+81320895 Msa1129320:CDS
TTTAAGTCTCCTACCGGAAA+CGG 0.447129 7_3:-81323239 None:intergenic
CCTCCTTCTCTCGGCCCAAC+CGG 0.448689 7_3:-81320832 None:intergenic
TGTTGTAGCTAAATTCCGTT+TGG 0.449947 7_3:+81323018 Msa1129320:three_prime_UTR
GTGGGTTGGAAATGGGGCTG+TGG 0.452154 7_3:-81322141 None:intergenic
CCGACAATAACGGGCCGGTT+GGG 0.453713 7_3:+81320818 Msa1129320:CDS
AAATAAAGTCTTCAATAGAA+TGG 0.455151 7_3:+81322605 Msa1129320:CDS
GAGCTGAGAGGAAGTCAAAT+GGG 0.457275 7_3:-81322348 None:intergenic
ACGCTTACACTGATTATAAT+CGG 0.458377 7_3:-81323136 None:intergenic
ACTACCCTGCCAATAATTGT+TGG 0.465832 7_3:-81322995 None:intergenic
ACAAGGACCACTCCCCGTTA+AGG 0.467855 7_3:+81323317 Msa1129320:three_prime_UTR
ACTATTTCAGAGGAAATTAA+CGG 0.471112 7_3:-81320436 None:intergenic
TGAGGCACAGCTTATTGCTT+GGG 0.472460 7_3:+81320973 Msa1129320:CDS
TTGAGCCAACAATTATTGGC+AGG 0.473229 7_3:+81322990 Msa1129320:three_prime_UTR
GGATGAATTTGGAATGTTGT+TGG 0.474167 7_3:-81322206 None:intergenic
TCAGACAATGATTCCCTCAA+TGG 0.481558 7_3:-81320779 None:intergenic
CTCTCTCCTGAGTAACTAAC+GGG 0.485509 7_3:+81323404 Msa1129320:three_prime_UTR
CTAAAAGGTGACCATGTGCT+AGG 0.487865 7_3:-81321013 None:intergenic
CGTTTCCAAAATATCCAGTT+GGG 0.487866 7_3:-81322474 None:intergenic
TTGATTGGAGTGAAGAAAGG+TGG 0.490101 7_3:-81322160 None:intergenic
CTATTTCAGAGGAAATTAAC+GGG 0.490404 7_3:-81320435 None:intergenic
ATTTGAATTGGATCCATTGA+GGG 0.492343 7_3:+81320766 Msa1129320:CDS
GGTCTACACCCGTCAACTTG+TGG 0.496901 7_3:-81320676 None:intergenic
CACCATCCTCCTCCTTCTCT+CGG 0.500291 7_3:-81320841 None:intergenic
CACTTATTAATTCATCCAAA+CGG 0.501081 7_3:-81323033 None:intergenic
ATGAGGCACAGCTTATTGCT+TGG 0.502747 7_3:+81320972 Msa1129320:CDS
AAATATCCAGTTGGGAGTGA+TGG 0.503498 7_3:-81322466 None:intergenic
TTAATTCACACACACTTGAA+AGG 0.506149 7_3:+81322568 Msa1129320:CDS
GATATTAGAGCATCTCCAAT+GGG 0.507222 7_3:+81323281 Msa1129320:three_prime_UTR
CATTTGAATTGGATCCATTG+AGG 0.507624 7_3:+81320765 Msa1129320:CDS
AGAAAGGTGGGTTGGAAATG+GGG 0.508550 7_3:-81322147 None:intergenic
GGGCCGGTTGGGCCGAGAGA+AGG 0.509409 7_3:+81320829 Msa1129320:CDS
AACTGTGATAGTAATGTTGA+AGG 0.511473 7_3:+81322855 Msa1129320:CDS
CCAACCGGCCCGTTATTGTC+GGG 0.512607 7_3:-81320817 None:intergenic
CCCCGTTAAGGACCCTCCAT+TGG 0.513158 7_3:+81323329 Msa1129320:three_prime_UTR
GTGTATGATAACTCATACCA+TGG 0.520501 7_3:-81320697 None:intergenic
GGAATGTTGTTGGTTAGGAT+TGG 0.521481 7_3:-81322196 None:intergenic
GGAGGGTCCTTAACGGGGAG+TGG 0.522087 7_3:-81323324 None:intergenic
GATTATCCTTGCTGGCTGTA+GGG 0.526008 7_3:+81322933 Msa1129320:CDS
ATTAGTTATTGGCATGGCAG+TGG 0.526180 7_3:+81323073 Msa1129320:three_prime_UTR
AAAATTGAAGAAATGGAGAA+TGG 0.526372 7_3:+81322523 Msa1129320:CDS
CGAACTATTTATAACAAACA+TGG 0.526568 7_3:-81320462 None:intergenic
GTATTGATTGGAGTGAAGAA+AGG 0.526703 7_3:-81322163 None:intergenic
AGAATGGTTTGAGTCACAAA+AGG 0.528973 7_3:+81322621 Msa1129320:CDS
CCCGACAATAACGGGCCGGT+TGG 0.531253 7_3:+81320817 Msa1129320:CDS
CCGGTTGGGCCGAGAGAAGG+AGG 0.533083 7_3:+81320832 Msa1129320:CDS
GGAGTGGTCCTTGTTAAGTA+AGG 0.533286 7_3:-81323308 None:intergenic
AGATTATCCTTGCTGGCTGT+AGG 0.533649 7_3:+81322932 Msa1129320:CDS
TGATTGGAGTGAAGAAAGGT+GGG 0.533702 7_3:-81322159 None:intergenic
ATAGTGATGCCTTCTTCAGA+TGG 0.535268 7_3:+81322820 Msa1129320:CDS
GCAAACCCTCCATCTGAAGA+AGG 0.535965 7_3:-81322829 None:intergenic
AGAGCTGAGAGGAAGTCAAA+TGG 0.537078 7_3:-81322349 None:intergenic
GGTAAGACCCACAAGTTGAC+GGG 0.538277 7_3:+81320668 Msa1129320:CDS
GTAATAAAATGTGTACTACT+TGG 0.539053 7_3:+81323443 Msa1129320:three_prime_UTR
AGCTCATGTTTCTTGTCGAG+TGG 0.541963 7_3:+81322771 Msa1129320:CDS
CGTTAAGGACCCTCCATTGG+AGG 0.542327 7_3:+81323332 Msa1129320:three_prime_UTR
TGGGTCTTACCCGAACTCAC+TGG 0.545145 7_3:-81320656 None:intergenic
TGAACTTGAGAATTTGAAAG+TGG 0.545632 7_3:-81322272 None:intergenic
TATGTTTGATGAAGAGGTAA+TGG 0.545889 7_3:-81322242 None:intergenic
GTGGGGAATGTGGACGGTGA+AGG 0.546274 7_3:+81322790 Msa1129320:CDS
CAGATAAATAGCTTCAAAGA+AGG 0.547152 7_3:+81322028 Msa1129320:intron
GCTCATGTTTCTTGTCGAGT+GGG 0.548354 7_3:+81322772 Msa1129320:CDS
GTTGGTTAGGATTGGTGAAG+AGG 0.549410 7_3:-81322188 None:intergenic
GTCAGAGACAGATCAGTGTA+AGG 0.552279 7_3:+81320595 Msa1129320:CDS
TGAGAATTTGAAAGTGGCTG+TGG 0.559985 7_3:-81322266 None:intergenic
TTATTACTTCTTTATGCAAG+TGG 0.560226 7_3:-81323468 None:intergenic
TGGAGTGAAGAAAGGTGGGT+TGG 0.561597 7_3:-81322155 None:intergenic
TGATGCCTTCTTCAGATGGA+GGG 0.561884 7_3:+81322824 Msa1129320:CDS
TGATATTAGAGCATCTCCAA+TGG 0.563836 7_3:+81323280 Msa1129320:three_prime_UTR
TATTACTTCTTTATGCAAGT+GGG 0.564425 7_3:-81323467 None:intergenic
TTGGATGAATTAATAAGTGT+AGG 0.567829 7_3:+81323037 Msa1129320:three_prime_UTR
GAAGTTAGGTGTAATGATGC+TGG 0.568774 7_3:+81320878 Msa1129320:CDS
GTGAGACCCGTTAGTTACTC+AGG 0.569093 7_3:-81323410 None:intergenic
CTCATGTTTCTTGTCGAGTG+GGG 0.569487 7_3:+81322773 Msa1129320:CDS
GTTAGTTACTCAGGAGAGAG+AGG 0.570925 7_3:-81323401 None:intergenic
GACCTATTTAAGTCTCCTAC+CGG 0.573310 7_3:-81323245 None:intergenic
GGAAGAATTAGTTATTGGCA+TGG 0.577018 7_3:+81323067 Msa1129320:three_prime_UTR
AACACTGGATTCAAAACTAA+CGG 0.577037 7_3:+81320619 Msa1129320:CDS
GGGTAAGACCCACAAGTTGA+CGG 0.579828 7_3:+81320667 Msa1129320:CDS
ATTGAGTTCCCGTTAAGGAA+CGG 0.580857 7_3:+81323362 Msa1129320:three_prime_UTR
GTGATGCCTTCTTCAGATGG+AGG 0.582800 7_3:+81322823 Msa1129320:CDS
GGCCGAGAGAAGGAGGAGGA+TGG 0.583468 7_3:+81320839 Msa1129320:CDS
GAACACCTAAATGCATGTAT+GGG 0.584202 7_3:+81322665 Msa1129320:CDS
TCACAAAAGGAAACTGAGGA+AGG 0.584832 7_3:+81322634 Msa1129320:CDS
TAAAAGGTGACCATGTGCTA+GGG 0.586599 7_3:-81321012 None:intergenic
TAGAGTCATAAAGGCTAATG+TGG 0.586817 7_3:+81320904 Msa1129320:CDS
TCTCTCTCCTGAGTAACTAA+CGG 0.587505 7_3:+81323403 Msa1129320:three_prime_UTR
GATGAAGAGGTAATGGTCTG+TGG 0.593007 7_3:-81322235 None:intergenic
AGATCAGTGTAAGGTAACAC+TGG 0.594403 7_3:+81320604 Msa1129320:CDS
TGTGGCTATGTTTGATGAAG+AGG 0.596735 7_3:-81322248 None:intergenic
GACCATGTGCTAGGGTCATG+AGG 0.598936 7_3:-81321004 None:intergenic
GCGTTTCCAAAATATCCAGT+TGG 0.599293 7_3:-81322475 None:intergenic
CGAGAGAAGGAGGAGGATGG+TGG 0.600282 7_3:+81320842 Msa1129320:CDS
TGTGATAGTAATGTTGAAGG+AGG 0.600877 7_3:+81322858 Msa1129320:CDS
ATGTTGAAGGAGGAAGAACT+TGG 0.600995 7_3:+81322868 Msa1129320:CDS
AGACTTAAATAGGTCTCCTA+CGG 0.605396 7_3:+81323253 Msa1129320:three_prime_UTR
TTCTTGTCGAGTGGGGAATG+TGG 0.607119 7_3:+81322780 Msa1129320:CDS
ATAAATAGCTTCAAAGAAGG+TGG 0.607597 7_3:+81322031 Msa1129320:CDS
TGGATAGTACTATTGATGAA+TGG 0.608688 7_3:+81320924 Msa1129320:CDS
GTTGGGCCGAGAGAAGGAGG+AGG 0.619970 7_3:+81320835 Msa1129320:CDS
TTCTGCTACTGGATCTGATG+AGG 0.621739 7_3:+81320955 Msa1129320:CDS
CACAAAAGGAAACTGAGGAA+GGG 0.622438 7_3:+81322635 Msa1129320:CDS
AATTCACACACACTTGAAAG+GGG 0.623746 7_3:+81322570 Msa1129320:CDS
TGTCGAGTGGGGAATGTGGA+CGG 0.625379 7_3:+81322784 Msa1129320:CDS
TATAATCAGTGTAAGCGTGT+GGG 0.629877 7_3:+81323141 Msa1129320:three_prime_UTR
GCTCTAATATCACCTACCGT+AGG 0.630800 7_3:-81323269 None:intergenic
TGAGCCAACAATTATTGGCA+GGG 0.632053 7_3:+81322991 Msa1129320:three_prime_UTR
TTAAATAGGTCTCCTACGGT+AGG 0.634859 7_3:+81323257 Msa1129320:three_prime_UTR
TTATAATCAGTGTAAGCGTG+TGG 0.637530 7_3:+81323140 Msa1129320:three_prime_UTR
AACATGGAGTACTATTTCAG+AGG 0.639440 7_3:-81320446 None:intergenic
TAACGGGGACACAAAATGGA+GGG 0.642725 7_3:-81320419 None:intergenic
TTCGCAATATTAATGAAGCT+AGG 0.644020 7_3:+81320481 Msa1129320:five_prime_UTR
TGCCTCATGACCCTAGCACA+TGG 0.645951 7_3:+81321002 Msa1129320:CDS
CCAATGGAGGGTCCTTAACG+GGG 0.647949 7_3:-81323329 None:intergenic
ACTCGACAAGAAACATGAGC+TGG 0.648220 7_3:-81322769 None:intergenic
TTAGTTACTCAGGAGAGAGA+GGG 0.648431 7_3:-81323400 None:intergenic
TGAGAGGAAGTCAAATGGGG+TGG 0.650646 7_3:-81322344 None:intergenic
TGAGTCACAAAAGGAAACTG+AGG 0.655458 7_3:+81322630 Msa1129320:CDS
AACGGGGACACAAAATGGAG+GGG 0.665746 7_3:-81320418 None:intergenic
TTAACGGGGACACAAAATGG+AGG 0.666969 7_3:-81320420 None:intergenic
TATTAGAGCATCTCCAATGG+GGG 0.671314 7_3:+81323283 Msa1129320:three_prime_UTR
TATACCCGACAATAACGGGC+CGG 0.671866 7_3:+81320813 Msa1129320:CDS
AAGTTGACGGGTGTAGACCA+TGG 0.675286 7_3:+81320680 Msa1129320:CDS
AGCTGAGAGGAAGTCAAATG+GGG 0.678609 7_3:-81322347 None:intergenic
ATTAGAGCATCTCCAATGGG+GGG 0.701573 7_3:+81323284 Msa1129320:three_prime_UTR
ATATTAGAGCATCTCCAATG+GGG 0.709931 7_3:+81323282 Msa1129320:three_prime_UTR
GAGTCCAAAATAGAGCTGAG+AGG 0.726138 7_3:-81322360 None:intergenic
TATTTCAGAGGAAATTAACG+GGG 0.745503 7_3:-81320434 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATCTTGTAATTTAAA+CGG - chr7_3:81321283-81321302 None:intergenic 10.0%
!! TTAATATTAATATTAAAGCT+AGG + chr7_3:81321298-81321317 Msa1129320:intron 10.0%
!! ATTACAAAAATGAAGAAAAA+TGG + chr7_3:81320735-81320754 Msa1129320:CDS 15.0%
!!! AGCAAAATAATATATTTTCA+TGG + chr7_3:81321664-81321683 Msa1129320:intron 15.0%
!!! TTTGTTTATTTACTCATTTT+TGG + chr7_3:81323214-81323233 Msa1129320:three_prime_UTR 15.0%
!! AAAATGAAGAAAAATGGTTT+AGG + chr7_3:81320741-81320760 Msa1129320:CDS 20.0%
!! ATGATTGATACTTAAAATTG+TGG - chr7_3:81321132-81321151 None:intergenic 20.0%
!!! AGATTTTTTTTTTCCTACTT+TGG - chr7_3:81321179-81321198 None:intergenic 20.0%
!! AGAAAAGGAAGAAATTAAAT+TGG - chr7_3:81321586-81321605 None:intergenic 20.0%
!! ATTAAAATATACACCTCAAA+TGG - chr7_3:81321748-81321767 None:intergenic 20.0%
!! GTATAGATAAATTGAATTAG+TGG + chr7_3:81321949-81321968 Msa1129320:intron 20.0%
!!! ACATTTTTTGTTTTGGATTT+TGG - chr7_3:81322317-81322336 None:intergenic 20.0%
!! GTTTGATTATGAATTTCTTT+GGG - chr7_3:81322403-81322422 None:intergenic 20.0%
!! AGTTTGATTATGAATTTCTT+TGG - chr7_3:81322404-81322423 None:intergenic 20.0%
!! TTCACTAAAAATTGAAGAAA+TGG + chr7_3:81322516-81322535 Msa1129320:CDS 20.0%
!! AAATAAAGTCTTCAATAGAA+TGG + chr7_3:81322605-81322624 Msa1129320:CDS 20.0%
!! TTTACTAGAATGAAATTGTT+TGG + chr7_3:81323183-81323202 Msa1129320:three_prime_UTR 20.0%
! ACTATTTCAGAGGAAATTAA+CGG - chr7_3:81320439-81320458 None:intergenic 25.0%
! CGAACTATTTATAACAAACA+TGG - chr7_3:81320465-81320484 None:intergenic 25.0%
!! TAAAGTACCTGAATTCTAAA+AGG - chr7_3:81321031-81321050 None:intergenic 25.0%
!!! TTTTTTTTCCTACTTTGGTT+AGG - chr7_3:81321174-81321193 None:intergenic 25.0%
! GAAAATGGAGAAAAATTCAT+GGG + chr7_3:81321349-81321368 Msa1129320:intron 25.0%
! AAAAATAACGTGAAAGATCT+AGG - chr7_3:81321402-81321421 None:intergenic 25.0%
!!! TTTATTTTTTTCAACCTGAG+AGG + chr7_3:81321420-81321439 Msa1129320:intron 25.0%
! CATTTAGATTAAGAGAAAGA+TGG - chr7_3:81321465-81321484 None:intergenic 25.0%
! CATCTTTCTCTTAATCTAAA+TGG + chr7_3:81321463-81321482 Msa1129320:intron 25.0%
!! TGAAGACTATAATCTAAAAC+TGG + chr7_3:81321518-81321537 Msa1129320:intron 25.0%
! CAATAATGTAGATGTAAATC+AGG - chr7_3:81321836-81321855 None:intergenic 25.0%
! CTGATTTACATCTACATTAT+TGG + chr7_3:81321834-81321853 Msa1129320:intron 25.0%
! GATAAATTGAATTAGTGGTA+CGG + chr7_3:81321954-81321973 Msa1129320:intron 25.0%
! ATAAATTGAATTAGTGGTAC+GGG + chr7_3:81321955-81321974 Msa1129320:intron 25.0%
!!! CATTAGGACATTTTTTGTTT+TGG - chr7_3:81322324-81322343 None:intergenic 25.0%
! AAAATTGAAGAAATGGAGAA+TGG + chr7_3:81322523-81322542 Msa1129320:CDS 25.0%
! CACTTATTAATTCATCCAAA+CGG - chr7_3:81323036-81323055 None:intergenic 25.0%
! TTGGATGAATTAATAAGTGT+AGG + chr7_3:81323037-81323056 Msa1129320:three_prime_UTR 25.0%
! TGTTTGGAAGAATTAGTTAT+TGG + chr7_3:81323062-81323081 Msa1129320:three_prime_UTR 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr7_3:81323443-81323462 Msa1129320:three_prime_UTR 25.0%
TATTTCAGAGGAAATTAACG+GGG - chr7_3:81320437-81320456 None:intergenic 30.0%
CTATTTCAGAGGAAATTAAC+GGG - chr7_3:81320438-81320457 None:intergenic 30.0%
TTCGCAATATTAATGAAGCT+AGG + chr7_3:81320481-81320500 Msa1129320:five_prime_UTR 30.0%
AACACTGGATTCAAAACTAA+CGG + chr7_3:81320619-81320638 Msa1129320:CDS 30.0%
ATGGTTTAGGTCATTTGAAT+TGG + chr7_3:81320754-81320773 Msa1129320:CDS 30.0%
ATTTGAATTGGATCCATTGA+GGG + chr7_3:81320766-81320785 Msa1129320:CDS 30.0%
TGGATAGTACTATTGATGAA+TGG + chr7_3:81320924-81320943 Msa1129320:CDS 30.0%
! TCAGGTACTTTAATTTATGC+TGG + chr7_3:81321039-81321058 Msa1129320:intron 30.0%
!! AGTAAGTATGAGCTATTTTG+TGG + chr7_3:81321062-81321081 Msa1129320:intron 30.0%
GGAAAATGGAGAAAAATTCA+TGG + chr7_3:81321348-81321367 Msa1129320:intron 30.0%
! AATTGATAGTATACACGAGA+GGG - chr7_3:81321610-81321629 None:intergenic 30.0%
! AAATTGATAGTATACACGAG+AGG - chr7_3:81321611-81321630 None:intergenic 30.0%
AAAATATACACCTCAAATGG+AGG - chr7_3:81321745-81321764 None:intergenic 30.0%
TGATGAAGTCTCTAATGAAA+GGG - chr7_3:81321804-81321823 None:intergenic 30.0%
ATGATGAAGTCTCTAATGAA+AGG - chr7_3:81321805-81321824 None:intergenic 30.0%
! GAAGGTATGAAGTAATAAAC+TGG + chr7_3:81321993-81322012 Msa1129320:intron 30.0%
GTATGAAGTAATAAACTGGT+GGG + chr7_3:81321997-81322016 Msa1129320:intron 30.0%
TATGAAGTAATAAACTGGTG+GGG + chr7_3:81321998-81322017 Msa1129320:intron 30.0%
CAGATAAATAGCTTCAAAGA+AGG + chr7_3:81322028-81322047 Msa1129320:intron 30.0%
ATAAATAGCTTCAAAGAAGG+TGG + chr7_3:81322031-81322050 Msa1129320:CDS 30.0%
CATCATCATTCTTCAAATCA+TGG + chr7_3:81322104-81322123 Msa1129320:CDS 30.0%
! AATTTGGAATGTTGTTGGTT+AGG - chr7_3:81322204-81322223 None:intergenic 30.0%
TATGTTTGATGAAGAGGTAA+TGG - chr7_3:81322245-81322264 None:intergenic 30.0%
TGAACTTGAGAATTTGAAAG+TGG - chr7_3:81322275-81322294 None:intergenic 30.0%
!!! TTTGTTTTGGATTTTGGAGA+GGG - chr7_3:81322311-81322330 None:intergenic 30.0%
!!! TTTTGTTTTGGATTTTGGAG+AGG - chr7_3:81322312-81322331 None:intergenic 30.0%
TTAATTCACACACACTTGAA+AGG + chr7_3:81322568-81322587 Msa1129320:CDS 30.0%
TAATTCACACACACTTGAAA+GGG + chr7_3:81322569-81322588 Msa1129320:CDS 30.0%
AACTGTGATAGTAATGTTGA+AGG + chr7_3:81322855-81322874 Msa1129320:CDS 30.0%
! TTAATAAGTGTAGGCTTGTT+TGG + chr7_3:81323046-81323065 Msa1129320:three_prime_UTR 30.0%
! ACGCTTACACTGATTATAAT+CGG - chr7_3:81323139-81323158 None:intergenic 30.0%
TATAATTGTCCGTTCCTTAA+CGG - chr7_3:81323374-81323393 None:intergenic 30.0%
AAGGAACGGACAATTATATA+AGG + chr7_3:81323376-81323395 Msa1129320:three_prime_UTR 30.0%
AAATTAACGGGGACACAAAA+TGG - chr7_3:81320426-81320445 None:intergenic 35.0%
! AACATGGAGTACTATTTCAG+AGG - chr7_3:81320449-81320468 None:intergenic 35.0%
GTGTATGATAACTCATACCA+TGG - chr7_3:81320700-81320719 None:intergenic 35.0%
CATTTGAATTGGATCCATTG+AGG + chr7_3:81320765-81320784 Msa1129320:CDS 35.0%
TAGAGTCATAAAGGCTAATG+TGG + chr7_3:81320904-81320923 Msa1129320:CDS 35.0%
!!! ATGGTCACCTTTTAGAATTC+AGG + chr7_3:81321021-81321040 Msa1129320:CDS 35.0%
! TTTTCTTGCCTAACCAAAGT+AGG + chr7_3:81321163-81321182 Msa1129320:intron 35.0%
CAACATGCATATCCCAAAAA+GGG + chr7_3:81321213-81321232 Msa1129320:intron 35.0%
TAGGAGAGACAAATCACTTA+AGG + chr7_3:81321317-81321336 Msa1129320:intron 35.0%
AGACAAATCACTTAAGGTTG+TGG + chr7_3:81321323-81321342 Msa1129320:intron 35.0%
AAATCACTTAAGGTTGTGGA+TGG + chr7_3:81321327-81321346 Msa1129320:intron 35.0%
TTAAGGTTGTGGATGGAAAA+TGG + chr7_3:81321334-81321353 Msa1129320:intron 35.0%
GATGAAGTCTCTAATGAAAG+GGG - chr7_3:81321803-81321822 None:intergenic 35.0%
!! GGGTGATTTGGTATTTAAGA+AGG + chr7_3:81321975-81321994 Msa1129320:intron 35.0%
GGTATGAAGTAATAAACTGG+TGG + chr7_3:81321996-81322015 Msa1129320:intron 35.0%
!! GTATTGATTGGAGTGAAGAA+AGG - chr7_3:81322166-81322185 None:intergenic 35.0%
! GGATGAATTTGGAATGTTGT+TGG - chr7_3:81322209-81322228 None:intergenic 35.0%
!!! TGTGGTTTTAGGGATGAATT+TGG - chr7_3:81322220-81322239 None:intergenic 35.0%
CGTTTCCAAAATATCCAGTT+GGG - chr7_3:81322477-81322496 None:intergenic 35.0%
GAAATGGAGAATGGTGAATT+AGG + chr7_3:81322532-81322551 Msa1129320:CDS 35.0%
AATTCACACACACTTGAAAG+GGG + chr7_3:81322570-81322589 Msa1129320:CDS 35.0%
AGAATGGTTTGAGTCACAAA+AGG + chr7_3:81322621-81322640 Msa1129320:CDS 35.0%
GAACACCTAAATGCATGTAT+GGG + chr7_3:81322665-81322684 Msa1129320:CDS 35.0%
TCTTTCCCATACATGCATTT+AGG - chr7_3:81322673-81322692 None:intergenic 35.0%
! AGAGTTAACTTTTGTCTGCA+TGG + chr7_3:81322690-81322709 Msa1129320:CDS 35.0%
TGTGATAGTAATGTTGAAGG+AGG + chr7_3:81322858-81322877 Msa1129320:CDS 35.0%
CTGTTTGAGCCAACAATTAT+TGG + chr7_3:81322986-81323005 Msa1129320:three_prime_UTR 35.0%
TGTTGTAGCTAAATTCCGTT+TGG + chr7_3:81323018-81323037 Msa1129320:three_prime_UTR 35.0%
GGAAGAATTAGTTATTGGCA+TGG + chr7_3:81323067-81323086 Msa1129320:three_prime_UTR 35.0%
TTATAATCAGTGTAAGCGTG+TGG + chr7_3:81323140-81323159 Msa1129320:three_prime_UTR 35.0%
TATAATCAGTGTAAGCGTGT+GGG + chr7_3:81323141-81323160 Msa1129320:three_prime_UTR 35.0%
AGACTTAAATAGGTCTCCTA+CGG + chr7_3:81323253-81323272 Msa1129320:three_prime_UTR 35.0%
! TGATATTAGAGCATCTCCAA+TGG + chr7_3:81323280-81323299 Msa1129320:three_prime_UTR 35.0%
! GATATTAGAGCATCTCCAAT+GGG + chr7_3:81323281-81323300 Msa1129320:three_prime_UTR 35.0%
! ATATTAGAGCATCTCCAATG+GGG + chr7_3:81323282-81323301 Msa1129320:three_prime_UTR 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG - chr7_3:81323344-81323363 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG - chr7_3:81323345-81323364 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG - chr7_3:81323348-81323367 None:intergenic 35.0%
GAAAAATTGAGTTCCCGTTA+AGG + chr7_3:81323357-81323376 Msa1129320:three_prime_UTR 35.0%
ATAATTGTCCGTTCCTTAAC+GGG - chr7_3:81323373-81323392 None:intergenic 35.0%
AGATCAGTGTAAGGTAACAC+TGG + chr7_3:81320604-81320623 Msa1129320:CDS 40.0%
TCAGACAATGATTCCCTCAA+TGG - chr7_3:81320782-81320801 None:intergenic 40.0%
GTCGATATACCCGACAATAA+CGG + chr7_3:81320808-81320827 Msa1129320:CDS 40.0%
TCGATATACCCGACAATAAC+GGG + chr7_3:81320809-81320828 Msa1129320:CDS 40.0%
! GTACTGGTAATTGGGAAGTT+AGG + chr7_3:81320864-81320883 Msa1129320:CDS 40.0%
GAAGTTAGGTGTAATGATGC+TGG + chr7_3:81320878-81320897 Msa1129320:CDS 40.0%
! TGCTGGTGTTAGAGTCATAA+AGG + chr7_3:81320895-81320914 Msa1129320:CDS 40.0%
TAAAAGGTGACCATGTGCTA+GGG - chr7_3:81321015-81321034 None:intergenic 40.0%
!!! CCTTTTTGGGATATGCATGT+TGG - chr7_3:81321215-81321234 None:intergenic 40.0%
CCAACATGCATATCCCAAAA+AGG + chr7_3:81321212-81321231 Msa1129320:intron 40.0%
TGCATATCCCAAAAAGGGAT+TGG + chr7_3:81321218-81321237 Msa1129320:intron 40.0%
! AGAGGATCCAATCCCTTTTT+GGG - chr7_3:81321228-81321247 None:intergenic 40.0%
! AAGAGGATCCAATCCCTTTT+TGG - chr7_3:81321229-81321248 None:intergenic 40.0%
TATACACGAGAGGGAAGAAA+AGG - chr7_3:81321601-81321620 None:intergenic 40.0%
TTCCAAGTTTCCTCCATTTG+AGG + chr7_3:81321732-81321751 Msa1129320:intron 40.0%
AATTAGTGGTACGGGTGATT+TGG + chr7_3:81321963-81321982 Msa1129320:intron 40.0%
AAAGAAGGTGGTGTAGCAAT+AGG + chr7_3:81322043-81322062 Msa1129320:CDS 40.0%
!! AAGAAAGGTGGGTTGGAAAT+GGG - chr7_3:81322151-81322170 None:intergenic 40.0%
TGATTGGAGTGAAGAAAGGT+GGG - chr7_3:81322162-81322181 None:intergenic 40.0%
TTGATTGGAGTGAAGAAAGG+TGG - chr7_3:81322163-81322182 None:intergenic 40.0%
!! GGTGAAGAGGTAGTATTGAT+TGG - chr7_3:81322178-81322197 None:intergenic 40.0%
! GGAATGTTGTTGGTTAGGAT+TGG - chr7_3:81322199-81322218 None:intergenic 40.0%
!! GGTAATGGTCTGTGGTTTTA+GGG - chr7_3:81322230-81322249 None:intergenic 40.0%
!! AGGTAATGGTCTGTGGTTTT+AGG - chr7_3:81322231-81322250 None:intergenic 40.0%
TGTGGCTATGTTTGATGAAG+AGG - chr7_3:81322251-81322270 None:intergenic 40.0%
TGAGAATTTGAAAGTGGCTG+TGG - chr7_3:81322269-81322288 None:intergenic 40.0%
! ACTTCCTCTCAGCTCTATTT+TGG + chr7_3:81322356-81322375 Msa1129320:CDS 40.0%
ATAAAACCATCACTCCCAAC+TGG + chr7_3:81322460-81322479 Msa1129320:CDS 40.0%
AAATATCCAGTTGGGAGTGA+TGG - chr7_3:81322469-81322488 None:intergenic 40.0%
! TCACTCCCAACTGGATATTT+TGG + chr7_3:81322469-81322488 Msa1129320:CDS 40.0%
GCGTTTCCAAAATATCCAGT+TGG - chr7_3:81322478-81322497 None:intergenic 40.0%
TGAGTCACAAAAGGAAACTG+AGG + chr7_3:81322630-81322649 Msa1129320:CDS 40.0%
TCACAAAAGGAAACTGAGGA+AGG + chr7_3:81322634-81322653 Msa1129320:CDS 40.0%
CACAAAAGGAAACTGAGGAA+GGG + chr7_3:81322635-81322654 Msa1129320:CDS 40.0%
GAAACTGAGGAAGGGAAATT+TGG + chr7_3:81322643-81322662 Msa1129320:CDS 40.0%
GGAACACCTAAATGCATGTA+TGG + chr7_3:81322664-81322683 Msa1129320:CDS 40.0%
! AACTTTTGTCTGCATGGAAG+AGG + chr7_3:81322696-81322715 Msa1129320:CDS 40.0%
ATAGTGATGCCTTCTTCAGA+TGG + chr7_3:81322820-81322839 Msa1129320:CDS 40.0%
ATGTTGAAGGAGGAAGAACT+TGG + chr7_3:81322868-81322887 Msa1129320:CDS 40.0%
TTGAGCCAACAATTATTGGC+AGG + chr7_3:81322990-81323009 Msa1129320:three_prime_UTR 40.0%
TGAGCCAACAATTATTGGCA+GGG + chr7_3:81322991-81323010 Msa1129320:three_prime_UTR 40.0%
ACTACCCTGCCAATAATTGT+TGG - chr7_3:81322998-81323017 None:intergenic 40.0%
ATTAGTTATTGGCATGGCAG+TGG + chr7_3:81323073-81323092 Msa1129320:three_prime_UTR 40.0%
TTTAAGTCTCCTACCGGAAA+CGG - chr7_3:81323242-81323261 None:intergenic 40.0%
TTCCGGTAGGAGACTTAAAT+AGG + chr7_3:81323243-81323262 Msa1129320:three_prime_UTR 40.0%
GACCTATTTAAGTCTCCTAC+CGG - chr7_3:81323248-81323267 None:intergenic 40.0%
TTAAATAGGTCTCCTACGGT+AGG + chr7_3:81323257-81323276 Msa1129320:three_prime_UTR 40.0%
! TATTAGAGCATCTCCAATGG+GGG + chr7_3:81323283-81323302 Msa1129320:three_prime_UTR 40.0%
ATTGAGTTCCCGTTAAGGAA+CGG + chr7_3:81323362-81323381 Msa1129320:three_prime_UTR 40.0%
TTAGTTACTCAGGAGAGAGA+GGG - chr7_3:81323403-81323422 None:intergenic 40.0%
TCTCTCTCCTGAGTAACTAA+CGG + chr7_3:81323403-81323422 Msa1129320:three_prime_UTR 40.0%
TAACGGGGACACAAAATGGA+GGG - chr7_3:81320422-81320441 None:intergenic 45.0%
TTAACGGGGACACAAAATGG+AGG - chr7_3:81320423-81320442 None:intergenic 45.0%
GTCAGAGACAGATCAGTGTA+AGG + chr7_3:81320595-81320614 Msa1129320:CDS 45.0%
!! AGGATGGTGGTACTGGTAAT+TGG + chr7_3:81320855-81320874 Msa1129320:CDS 45.0%
!! GGATGGTGGTACTGGTAATT+GGG + chr7_3:81320856-81320875 Msa1129320:CDS 45.0%
TGGCTATCATCTTCTGCTAC+TGG + chr7_3:81320944-81320963 Msa1129320:CDS 45.0%
TTCTGCTACTGGATCTGATG+AGG + chr7_3:81320955-81320974 Msa1129320:CDS 45.0%
ATGAGGCACAGCTTATTGCT+TGG + chr7_3:81320972-81320991 Msa1129320:CDS 45.0%
TGAGGCACAGCTTATTGCTT+GGG + chr7_3:81320973-81320992 Msa1129320:CDS 45.0%
CTAAAAGGTGACCATGTGCT+AGG - chr7_3:81321016-81321035 None:intergenic 45.0%
ATTGGATCCTCTTCCGTGAA+TGG + chr7_3:81321236-81321255 Msa1129320:intron 45.0%
TCACTAGACCTCTCCATTCA+CGG - chr7_3:81321252-81321271 None:intergenic 45.0%
CACCTCAAATGGAGGAAACT+TGG - chr7_3:81321737-81321756 None:intergenic 45.0%
!! AGAAAGGTGGGTTGGAAATG+GGG - chr7_3:81322150-81322169 None:intergenic 45.0%
!! GAAGAAAGGTGGGTTGGAAA+TGG - chr7_3:81322152-81322171 None:intergenic 45.0%
! GTTGGTTAGGATTGGTGAAG+AGG - chr7_3:81322191-81322210 None:intergenic 45.0%
! GATGAAGAGGTAATGGTCTG+TGG - chr7_3:81322238-81322257 None:intergenic 45.0%
AAGTCAAATGGGGTGGCATT+AGG - chr7_3:81322340-81322359 None:intergenic 45.0%
AGCTGAGAGGAAGTCAAATG+GGG - chr7_3:81322350-81322369 None:intergenic 45.0%
GAGCTGAGAGGAAGTCAAAT+GGG - chr7_3:81322351-81322370 None:intergenic 45.0%
AGAGCTGAGAGGAAGTCAAA+TGG - chr7_3:81322352-81322371 None:intergenic 45.0%
GAGTCCAAAATAGAGCTGAG+AGG - chr7_3:81322363-81322382 None:intergenic 45.0%
ACTCGACAAGAAACATGAGC+TGG - chr7_3:81322772-81322791 None:intergenic 45.0%
AGCTCATGTTTCTTGTCGAG+TGG + chr7_3:81322771-81322790 Msa1129320:CDS 45.0%
GCTCATGTTTCTTGTCGAGT+GGG + chr7_3:81322772-81322791 Msa1129320:CDS 45.0%
CTCATGTTTCTTGTCGAGTG+GGG + chr7_3:81322773-81322792 Msa1129320:CDS 45.0%
TGATGCCTTCTTCAGATGGA+GGG + chr7_3:81322824-81322843 Msa1129320:CDS 45.0%
GAGCCAAAGATTATCCTTGC+TGG + chr7_3:81322925-81322944 Msa1129320:CDS 45.0%
CAGCCAGCAAGGATAATCTT+TGG - chr7_3:81322931-81322950 None:intergenic 45.0%
! AGATTATCCTTGCTGGCTGT+AGG + chr7_3:81322932-81322951 Msa1129320:CDS 45.0%
! GATTATCCTTGCTGGCTGTA+GGG + chr7_3:81322933-81322952 Msa1129320:CDS 45.0%
GCTCTAATATCACCTACCGT+AGG - chr7_3:81323272-81323291 None:intergenic 45.0%
! ATTAGAGCATCTCCAATGGG+GGG + chr7_3:81323284-81323303 Msa1129320:three_prime_UTR 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr7_3:81323311-81323330 None:intergenic 45.0%
GTTAGTTACTCAGGAGAGAG+AGG - chr7_3:81323404-81323423 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG + chr7_3:81323404-81323423 Msa1129320:three_prime_UTR 45.0%
AACGGGGACACAAAATGGAG+GGG - chr7_3:81320421-81320440 None:intergenic 50.0%
GTCAAGCAGACCAGTGAGTT+CGG + chr7_3:81320646-81320665 Msa1129320:CDS 50.0%
TCAAGCAGACCAGTGAGTTC+GGG + chr7_3:81320647-81320666 Msa1129320:CDS 50.0%
! GGGTAAGACCCACAAGTTGA+CGG + chr7_3:81320667-81320686 Msa1129320:CDS 50.0%
! GGTAAGACCCACAAGTTGAC+GGG + chr7_3:81320668-81320687 Msa1129320:CDS 50.0%
GTCTACACCCGTCAACTTGT+GGG - chr7_3:81320678-81320697 None:intergenic 50.0%
! AAGTTGACGGGTGTAGACCA+TGG + chr7_3:81320680-81320699 Msa1129320:CDS 50.0%
!! TATACCCGACAATAACGGGC+CGG + chr7_3:81320813-81320832 Msa1129320:CDS 50.0%
ATCCTCTTCCGTGAATGGAG+AGG + chr7_3:81321241-81321260 Msa1129320:intron 50.0%
GCACGAGATTAGATCCTCTC+AGG - chr7_3:81321437-81321456 None:intergenic 50.0%
TGGAGTGAAGAAAGGTGGGT+TGG - chr7_3:81322158-81322177 None:intergenic 50.0%
TGAGAGGAAGTCAAATGGGG+TGG - chr7_3:81322347-81322366 None:intergenic 50.0%
TTCTTGTCGAGTGGGGAATG+TGG + chr7_3:81322780-81322799 Msa1129320:CDS 50.0%
GTGATGCCTTCTTCAGATGG+AGG + chr7_3:81322823-81322842 Msa1129320:CDS 50.0%
GCAAACCCTCCATCTGAAGA+AGG - chr7_3:81322832-81322851 None:intergenic 50.0%
! GTTTTACCCTACAGCCAGCA+AGG - chr7_3:81322942-81322961 None:intergenic 50.0%
!!! CTCATTTTTGGCGCCGTTTC+CGG + chr7_3:81323226-81323245 Msa1129320:three_prime_UTR 50.0%
GTTAAGTAAGGACCCCCCAT+TGG - chr7_3:81323299-81323318 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG + chr7_3:81323300-81323319 Msa1129320:three_prime_UTR 50.0%
TCCAATGGAGGGTCCTTAAC+GGG - chr7_3:81323333-81323352 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG - chr7_3:81323334-81323353 None:intergenic 50.0%
GTGAGACCCGTTAGTTACTC+AGG - chr7_3:81323413-81323432 None:intergenic 50.0%
TGGGTCTTACCCGAACTCAC+TGG - chr7_3:81320659-81320678 None:intergenic 55.0%
GGTCTACACCCGTCAACTTG+TGG - chr7_3:81320679-81320698 None:intergenic 55.0%
CACCATCCTCCTCCTTCTCT+CGG - chr7_3:81320844-81320863 None:intergenic 55.0%
! AAGGAGGAGGATGGTGGTAC+TGG + chr7_3:81320848-81320867 Msa1129320:CDS 55.0%
TGCCTCATGACCCTAGCACA+TGG + chr7_3:81321002-81321021 Msa1129320:CDS 55.0%
GACCATGTGCTAGGGTCATG+AGG - chr7_3:81321007-81321026 None:intergenic 55.0%
GACCTCTCCATTCACGGAAG+AGG - chr7_3:81321246-81321265 None:intergenic 55.0%
TGTCGAGTGGGGAATGTGGA+CGG + chr7_3:81322784-81322803 Msa1129320:CDS 55.0%
!! TTTTTGGCGCCGTTTCCGGT+AGG + chr7_3:81323230-81323249 Msa1129320:three_prime_UTR 55.0%
ACAAGGACCACTCCCCGTTA+AGG + chr7_3:81323317-81323336 Msa1129320:three_prime_UTR 55.0%
CCAATGGAGGGTCCTTAACG+GGG - chr7_3:81323332-81323351 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG + chr7_3:81323332-81323351 Msa1129320:three_prime_UTR 55.0%
CCAACCGGCCCGTTATTGTC+GGG - chr7_3:81320820-81320839 None:intergenic 60.0%
CCCAACCGGCCCGTTATTGT+CGG - chr7_3:81320821-81320840 None:intergenic 60.0%
!! CCGACAATAACGGGCCGGTT+GGG + chr7_3:81320818-81320837 Msa1129320:CDS 60.0%
CGAGAGAAGGAGGAGGATGG+TGG + chr7_3:81320842-81320861 Msa1129320:CDS 60.0%
GGTTGGAAATGGGGCTGTGG+CGG - chr7_3:81322141-81322160 None:intergenic 60.0%
!! GTGGGTTGGAAATGGGGCTG+TGG - chr7_3:81322144-81322163 None:intergenic 60.0%
GTGGGGAATGTGGACGGTGA+AGG + chr7_3:81322790-81322809 Msa1129320:CDS 60.0%
CCCCGTTAAGGACCCTCCAT+TGG + chr7_3:81323329-81323348 Msa1129320:three_prime_UTR 60.0%
!! CCCGACAATAACGGGCCGGT+TGG + chr7_3:81320817-81320836 Msa1129320:CDS 65.0%
CCTCCTTCTCTCGGCCCAAC+CGG - chr7_3:81320835-81320854 None:intergenic 65.0%
GTTGGGCCGAGAGAAGGAGG+AGG + chr7_3:81320835-81320854 Msa1129320:CDS 65.0%
GGCCGAGAGAAGGAGGAGGA+TGG + chr7_3:81320839-81320858 Msa1129320:CDS 65.0%
GGGGCTGTGGCGGTGAGTTT+GGG - chr7_3:81322131-81322150 None:intergenic 65.0%
TGGGGCTGTGGCGGTGAGTT+TGG - chr7_3:81322132-81322151 None:intergenic 65.0%
GGAGGGTCCTTAACGGGGAG+TGG - chr7_3:81323327-81323346 None:intergenic 65.0%
CCGGTTGGGCCGAGAGAAGG+AGG + chr7_3:81320832-81320851 Msa1129320:CDS 70.0%
GGGCCGGTTGGGCCGAGAGA+AGG + chr7_3:81320829-81320848 Msa1129320:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81320398 81323484 81320398 ID=Msa1129320;Name=Msa1129320
chr7_3 mRNA 81320398 81323484 81320398 ID=Msa1129320-mRNA-1;Parent=Msa1129320;Name=Msa1129320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=195|1|1|1|1|1|2|518|461
chr7_3 exon 81320398 81321042 81320398 ID=Msa1129320-mRNA-1:exon:23573;Parent=Msa1129320-mRNA-1
chr7_3 exon 81322031 81323484 81322031 ID=Msa1129320-mRNA-1:exon:23574;Parent=Msa1129320-mRNA-1
chr7_3 five_prime_UTR 81320398 81320592 81320398 ID=Msa1129320-mRNA-1:five_prime_utr;Parent=Msa1129320-mRNA-1
chr7_3 CDS 81320593 81321042 81320593 ID=Msa1129320-mRNA-1:cds;Parent=Msa1129320-mRNA-1
chr7_3 CDS 81322031 81322966 81322031 ID=Msa1129320-mRNA-1:cds;Parent=Msa1129320-mRNA-1
chr7_3 three_prime_UTR 81322967 81323484 81322967 ID=Msa1129320-mRNA-1:three_prime_utr;Parent=Msa1129320-mRNA-1
Gene Sequence

>Msa1129320

ATGTCAGAGACAGATCAGTGTAAGGTAACACTGGATTCAAAACTAACGGTTGTGTCAAGCAGACCAGTGAGTTCGGGTAAGACCCACAAGTTGACGGGTGTAGACCATGGTATGAGTTATCATACACTGCATTTGATATACTATTACAAAAATGAAGAAAAATGGTTTAGGTCATTTGAATTGGATCCATTGAGGGAATCATTGTCTGAAGTTTTGTCGATATACCCGACAATAACGGGCCGGTTGGGCCGAGAGAAGGAGGAGGATGGTGGTACTGGTAATTGGGAAGTTAGGTGTAATGATGCTGGTGTTAGAGTCATAAAGGCTAATGTGGATAGTACTATTGATGAATGGCTATCATCTTCTGCTACTGGATCTGATGAGGCACAGCTTATTGCTTGGGATGATATGCCTCATGACCCTAGCACATGGTCACCTTTTAGAATTCAGATAAATAGCTTCAAAGAAGGTGGTGTAGCAATAGGACTAAGTTTTAGTCACATGCTTTCTGATTTAACTTTTGCATCATCATTCTTCAAATCATGGACCCAAACTCACCGCCACAGCCCCATTTCCAACCCACCTTTCTTCACTCCAATCAATACTACCTCTTCACCAATCCTAACCAACAACATTCCAAATTCATCCCTAAAACCACAGACCATTACCTCTTCATCAAACATAGCCACAGCCACTTTCAAATTCTCAAGTTCAATCATGAAACATTCCCTCTCCAAAATCCAAAACAAAAAATGTCCTAATGCCACCCCATTTGACTTCCTCTCAGCTCTATTTTGGACTCGTGTTGCTCACTTGAATCCCAAAGAAATTCATAATCAAACTCACTCTTTATCAATCTGCAGAGACTTCAGAAAGCTAATAAAACCATCACTCCCAACTGGATATTTTGGAAACGCGTTACATTTTTCAAATCTTTCACTAAAAATTGAAGAAATGGAGAATGGTGAATTAGGAAACGTAGCAAGTTTAATTCACACACACTTGAAAGGGGTTACAGATAAAGAAATAAAGTCTTCAATAGAATGGTTTGAGTCACAAAAGGAAACTGAGGAAGGGAAATTTGGAACACCTAAATGCATGTATGGGAAAGAGTTAACTTTTGTCTGCATGGAAGAGGAAGAGACAGCATCATTGTTGTATGAATCAATGTTTTGTGATAGTGAGAAACCAGCTCATGTTTCTTGTCGAGTGGGGAATGTGGACGGTGAAGGTTTGATTATAGTGATGCCTTCTTCAGATGGAGGGTTTGCAAGAACTGTGATAGTAATGTTGAAGGAGGAAGAACTTGGTAAATTATGCAATGATCAAGAAATATTGAAGCTTGAGCCAAAGATTATCCTTGCTGGCTGTAGGGTAAAACGTTGA
Protein sequence

>Msa1129320

MSETDQCKVTLDSKLTVVSSRPVSSGKTHKLTGVDHGMSYHTLHLIYYYKNEEKWFRSFELDPLRESLSEVLSIYPTITGRLGREKEEDGGTGNWEVRCNDAGVRVIKANVDSTIDEWLSSSATGSDEAQLIAWDDMPHDPSTWSPFRIQINSFKEGGVAIGLSFSHMLSDLTFASSFFKSWTQTHRHSPISNPPFFTPINTTSSPILTNNIPNSSLKPQTITSSSNIATATFKFSSSIMKHSLSKIQNKKCPNATPFDFLSALFWTRVAHLNPKEIHNQTHSLSICRDFRKLIKPSLPTGYFGNALHFSNLSLKIEEMENGELGNVASLIHTHLKGVTDKEIKSSIEWFESQKETEEGKFGTPKCMYGKELTFVCMEEEETASLLYESMFCDSEKPAHVSCRVGNVDGEGLIIVMPSSDGGFARTVIVMLKEEELGKLCNDQEILKLEPKIILAGCRVKR*