AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187560 MtrunA17_Chr7g0274021 93.290 462 27 3 1 461 1 459 0.0 884
Msa0187560 MtrunA17_Chr1g0148851 32.397 463 275 12 9 454 5 446 1.01e-71 233
Msa0187560 MtrunA17_Chr8g0378151 25.527 427 263 14 29 439 32 419 9.73e-31 123
Msa0187560 MtrunA17_Chr2g0298091 26.067 445 269 18 16 439 19 424 1.64e-26 111
Msa0187560 MtrunA17_Chr4g0072041 28.297 364 236 11 8 355 13 367 1.07e-24 106
Msa0187560 MtrunA17_Chr8g0386141 26.667 345 213 11 31 354 28 353 2.83e-24 104
Msa0187560 MtrunA17_Chr2g0334001 24.155 414 274 13 39 436 33 422 4.28e-24 104
Msa0187560 MtrunA17_Chr1g0163441 25.835 449 265 20 16 439 18 423 8.47e-23 100
Msa0187560 MtrunA17_Chr3g0132831 25.113 442 278 17 16 439 18 424 1.28e-22 100
Msa0187560 MtrunA17_Chr8g0371821 26.488 336 204 9 41 355 35 348 2.81e-22 99.0
Msa0187560 MtrunA17_Chr4g0001861 24.331 411 278 13 39 436 33 423 5.53e-22 97.8
Msa0187560 MtrunA17_Chr3g0134091 27.638 398 258 11 61 445 65 445 3.16e-21 95.9
Msa0187560 MtrunA17_Chr4g0054081 25.122 410 273 11 46 433 45 442 6.95e-21 94.7
Msa0187560 MtrunA17_Chr7g0224391 25.683 366 240 11 6 354 12 362 8.66e-21 94.4
Msa0187560 MtrunA17_Chr3g0132001 25.203 369 246 13 1 354 6 359 5.15e-19 89.0
Msa0187560 MtrunA17_Chr3g0123061 24.379 443 300 14 6 446 2 411 5.47e-18 85.9
Msa0187560 MtrunA17_Chr8g0376901 25.749 334 209 11 8 324 2 313 4.70e-17 83.2
Msa0187560 MtrunA17_Chr3g0087401 24.927 341 222 10 31 348 23 352 3.93e-16 80.5
Msa0187560 MtrunA17_Chr4g0027071 24.058 345 233 12 31 355 33 368 1.71e-15 78.6
Msa0187560 MtrunA17_Chr3g0134101 24.688 401 252 12 61 446 83 448 2.35e-15 78.2
Msa0187560 MtrunA17_Chr7g0253501 21.429 378 264 10 9 361 2 371 5.71e-15 77.0
Msa0187560 MtrunA17_Chr3g0134041 26.061 330 221 11 38 352 40 361 8.73e-15 76.3
Msa0187560 MtrunA17_Chr6g0470591 24.126 286 193 9 64 333 71 348 3.31e-14 74.7
Msa0187560 MtrunA17_Chr5g0408911 21.495 321 228 8 44 354 55 361 5.59e-14 73.9
Msa0187560 MtrunA17_Chr3g0134061 23.278 421 279 14 51 446 55 456 6.13e-14 73.6
Msa0187560 MtrunA17_Chr7g0273721 23.706 367 237 12 43 391 45 386 7.59e-14 73.6
Msa0187560 MtrunA17_Chr3g0134121 24.880 418 246 13 61 446 66 447 8.57e-14 73.6
Msa0187560 MtrunA17_Chr2g0311401 22.259 301 208 6 149 436 5 292 1.10e-13 71.6
Msa0187560 MtrunA17_Chr8g0376891 24.852 338 207 12 8 324 2 313 1.17e-13 72.8
Msa0187560 MtrunA17_Chr5g0438681 23.006 326 217 10 8 319 2 307 3.21e-13 71.2
Msa0187560 MtrunA17_Chr5g0399681 28.095 210 129 7 45 241 49 249 3.51e-13 70.9
Msa0187560 MtrunA17_Chr1g0191081 24.062 320 216 11 27 331 35 342 1.12e-12 69.7
Msa0187560 MtrunA17_Chr7g0253531 21.485 377 265 11 9 361 2 371 1.58e-12 69.3
Msa0187560 MtrunA17_Chr4g0010351 26.829 328 184 14 60 352 51 357 1.92e-12 68.6
Msa0187560 MtrunA17_Chr7g0273761 24.062 320 210 9 45 345 418 723 3.36e-12 68.9
Msa0187560 MtrunA17_Chr5g0438701 23.030 330 220 10 8 324 2 310 5.99e-12 67.4
Msa0187560 MtrunA17_Chr3g0141851 22.186 311 223 7 57 353 54 359 6.49e-12 67.4
Msa0187560 MtrunA17_Chr1g0165681 22.866 328 216 9 37 345 38 347 6.52e-12 67.4
Msa0187560 MtrunA17_Chr7g0235531 21.842 380 245 10 8 354 3 363 2.08e-11 65.9
Msa0187560 MtrunA17_Chr7g0253541 21.921 406 253 11 64 429 60 441 3.94e-11 65.1
Msa0187560 MtrunA17_Chr8g0376911 22.074 299 196 9 27 309 22 299 7.44e-11 63.9
Msa0187560 MtrunA17_Chr4g0010331 25.937 347 222 15 22 348 15 346 9.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187560 AT4G29250.1 29.892 465 285 15 8 454 13 454 4.10e-57 196
Msa0187560 AT4G24510.1 27.314 443 260 23 16 439 13 412 2.08e-27 114
Msa0187560 AT3G23840.1 25.604 414 249 15 16 417 19 385 1.82e-24 105
Msa0187560 AT5G41040.2 27.300 337 217 10 31 351 38 362 2.74e-24 105
Msa0187560 AT5G41040.1 27.300 337 217 10 31 351 54 378 2.97e-24 105
Msa0187560 AT3G48720.1 25.074 339 230 10 29 354 28 355 7.92e-21 95.1
Msa0187560 AT4G13840.1 23.356 441 276 16 16 439 21 416 1.16e-20 94.4
Msa0187560 AT2G19070.1 24.932 369 249 7 9 358 4 363 3.21e-20 93.2
Msa0187560 AT5G63560.1 25.000 340 225 11 29 354 28 351 1.67e-19 90.9
Msa0187560 AT1G65450.1 24.011 379 252 9 5 360 14 379 5.13e-19 89.7
Msa0187560 AT5G07080.1 24.855 346 224 11 64 391 70 397 1.08e-18 88.6
Msa0187560 AT5G57840.1 22.727 440 298 13 21 439 12 430 6.90e-18 86.3
Msa0187560 AT5G48930.1 23.415 410 281 13 40 436 34 423 8.06e-18 85.9
Msa0187560 AT5G02890.1 30.247 162 99 5 34 186 36 192 2.57e-17 83.6
Msa0187560 AT1G24420.2 27.913 369 235 16 97 454 88 436 1.16e-16 82.4
Msa0187560 AT1G24420.1 27.913 369 235 16 97 454 88 436 1.16e-16 82.4
Msa0187560 AT1G24430.1 24.382 283 196 5 29 310 27 292 3.04e-15 78.2
Msa0187560 AT1G78990.1 24.540 326 221 10 43 356 46 358 9.08e-15 76.6
Msa0187560 AT5G16410.1 24.390 369 245 13 2 354 29 379 5.24e-14 74.3
Msa0187560 AT1G27620.1 23.856 306 207 9 64 353 58 353 1.09e-13 73.2
Msa0187560 AT1G32910.1 24.675 308 202 11 64 354 65 359 3.87e-13 71.6
Msa0187560 AT5G67150.1 24.684 316 188 11 64 348 61 357 4.07e-13 71.6
Msa0187560 AT5G23940.1 22.622 473 306 21 8 446 2 448 7.47e-13 70.9
Msa0187560 AT5G07870.1 24.057 424 267 14 54 448 62 459 6.59e-11 64.7
Msa0187560 AT5G07860.1 23.671 414 269 15 54 448 62 447 9.93e-11 63.9

Find 174 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCTCTCAGCTCTATTT+TGG 0.152255 2_1:-2301044 Msa0187560:CDS
TCACTCCCAACTGGATATTT+TGG 0.171448 2_1:-2300931 Msa0187560:CDS
CTGTTTGAGCCAACAATTAT+TGG 0.196140 2_1:-2300414 Msa0187560:three_prime_UTR
AGGATGGTGGTACTGGTAAT+TGG 0.217298 2_1:-2302545 Msa0187560:CDS
TCTTTCCCATACATGCATTT+AGG 0.229198 2_1:+2300730 None:intergenic
GAAACTGAGGAAGGGAAATT+TGG 0.242297 2_1:-2300757 Msa0187560:CDS
TGGGGCTGTGGCGGTGAGTT+TGG 0.257423 2_1:+2301271 None:intergenic
GAAATGGAGAATGGTGAATT+AGG 0.275452 2_1:-2300868 Msa0187560:CDS
AGTTTGATTATGAATTTCTT+TGG 0.283260 2_1:+2300999 None:intergenic
ATGGTTTAGGTCATTTGAAT+TGG 0.295132 2_1:-2302646 Msa0187560:CDS
TTAATAAGTGTAGGCTTGTT+TGG 0.300216 2_1:-2300354 Msa0187560:three_prime_UTR
TGTTTGGAAGAATTAGTTAT+TGG 0.314360 2_1:-2300338 Msa0187560:three_prime_UTR
GGGGCTGTGGCGGTGAGTTT+GGG 0.330855 2_1:+2301272 None:intergenic
AAGAAAGGTGGGTTGGAAAT+GGG 0.334991 2_1:+2301252 None:intergenic
CATCATCATTCTTCAAATCA+TGG 0.335273 2_1:-2301296 Msa0187560:CDS
TAAAGTACCTGAATTCTAAA+AGG 0.341780 2_1:+2302372 None:intergenic
TCGATATACCCGACAATAAC+GGG 0.355602 2_1:-2302591 Msa0187560:CDS
AAATTAACGGGGACACAAAA+TGG 0.363890 2_1:+2302977 None:intergenic
GAAGAAAGGTGGGTTGGAAA+TGG 0.366284 2_1:+2301251 None:intergenic
AAGTCAAATGGGGTGGCATT+AGG 0.368079 2_1:+2301063 None:intergenic
TTTACTAGAATGAAATTGTT+TGG 0.375244 2_1:-2300217 Msa0187560:three_prime_UTR
TCCAATGGAGGGTCCTTAAC+GGG 0.376598 2_1:+2300070 None:intergenic
ATAATTGTCCGTTCCTTAAC+GGG 0.380921 2_1:+2300030 None:intergenic
GGAACACCTAAATGCATGTA+TGG 0.381659 2_1:-2300736 Msa0187560:CDS
AAGGAGGAGGATGGTGGTAC+TGG 0.384784 2_1:-2302552 Msa0187560:CDS
GGTGAAGAGGTAGTATTGAT+TGG 0.386573 2_1:+2301225 None:intergenic
GTTTGATTATGAATTTCTTT+GGG 0.388732 2_1:+2301000 None:intergenic
GGATGGTGGTACTGGTAATT+GGG 0.389341 2_1:-2302544 Msa0187560:CDS
AAGGAACGGACAATTATATA+AGG 0.395956 2_1:-2300024 Msa0187560:three_prime_UTR
TATAATTGTCCGTTCCTTAA+CGG 0.399494 2_1:+2300029 None:intergenic
CCCAACCGGCCCGTTATTGT+CGG 0.402575 2_1:+2302582 None:intergenic
GTCAAGCAGACCAGTGAGTT+CGG 0.405126 2_1:-2302754 Msa0187560:CDS
AAAGAAGGTGGTGTAGCAAT+AGG 0.409784 2_1:-2301357 Msa0187560:CDS
CAGCCAGCAAGGATAATCTT+TGG 0.411817 2_1:+2300472 None:intergenic
CTCCAATGGAGGGTCCTTAA+CGG 0.418414 2_1:+2300069 None:intergenic
TTCCGGTAGGAGACTTAAAT+AGG 0.422742 2_1:-2300157 Msa0187560:three_prime_UTR
GTCGATATACCCGACAATAA+CGG 0.423205 2_1:-2302592 Msa0187560:CDS
TCAAGCAGACCAGTGAGTTC+GGG 0.424977 2_1:-2302753 Msa0187560:CDS
AATTTGGAATGTTGTTGGTT+AGG 0.426812 2_1:+2301199 None:intergenic
GAGCCAAAGATTATCCTTGC+TGG 0.432338 2_1:-2300475 Msa0187560:CDS
TGGCTATCATCTTCTGCTAC+TGG 0.433577 2_1:-2302456 Msa0187560:CDS
TAATTCACACACACTTGAAA+GGG 0.433647 2_1:-2300831 Msa0187560:CDS
GGTTGGAAATGGGGCTGTGG+CGG 0.435915 2_1:+2301262 None:intergenic
GTACTGGTAATTGGGAAGTT+AGG 0.436148 2_1:-2302536 Msa0187560:CDS
GTCTACACCCGTCAACTTGT+GGG 0.443630 2_1:+2302725 None:intergenic
ATAAAACCATCACTCCCAAC+TGG 0.443926 2_1:-2300940 Msa0187560:CDS
TGCTGGTGTTAGAGTCATAA+AGG 0.445154 2_1:-2302505 Msa0187560:CDS
TTTAAGTCTCCTACCGGAAA+CGG 0.447129 2_1:+2300161 None:intergenic
CCTCCTTCTCTCGGCCCAAC+CGG 0.448689 2_1:+2302568 None:intergenic
TGTTGTAGCTAAATTCCGTT+TGG 0.449947 2_1:-2300382 Msa0187560:three_prime_UTR
GTGGGTTGGAAATGGGGCTG+TGG 0.452154 2_1:+2301259 None:intergenic
CCGACAATAACGGGCCGGTT+GGG 0.453713 2_1:-2302582 Msa0187560:CDS
AAATAAAGTCTTCAATAGAA+TGG 0.455151 2_1:-2300795 Msa0187560:CDS
GAGCTGAGAGGAAGTCAAAT+GGG 0.457275 2_1:+2301052 None:intergenic
ACGCTTACACTGATTATAAT+CGG 0.458377 2_1:+2300264 None:intergenic
ACTACCCTGCCAATAATTGT+TGG 0.465832 2_1:+2300405 None:intergenic
ACAAGGACCACTCCCCGTTA+AGG 0.467855 2_1:-2300083 Msa0187560:three_prime_UTR
ACTATTTCAGAGGAAATTAA+CGG 0.471112 2_1:+2302964 None:intergenic
TGAGGCACAGCTTATTGCTT+GGG 0.472460 2_1:-2302427 Msa0187560:CDS
TTGAGCCAACAATTATTGGC+AGG 0.473229 2_1:-2300410 Msa0187560:three_prime_UTR
GGATGAATTTGGAATGTTGT+TGG 0.474167 2_1:+2301194 None:intergenic
TCAGACAATGATTCCCTCAA+TGG 0.481558 2_1:+2302621 None:intergenic
CTCTCTCCTGAGTAACTAAC+GGG 0.485509 2_1:-2299996 Msa0187560:three_prime_UTR
CTAAAAGGTGACCATGTGCT+AGG 0.487865 2_1:+2302387 None:intergenic
CGTTTCCAAAATATCCAGTT+GGG 0.487866 2_1:+2300926 None:intergenic
TTGATTGGAGTGAAGAAAGG+TGG 0.490101 2_1:+2301240 None:intergenic
CTATTTCAGAGGAAATTAAC+GGG 0.490404 2_1:+2302965 None:intergenic
ATTTGAATTGGATCCATTGA+GGG 0.492343 2_1:-2302634 Msa0187560:CDS
GGTCTACACCCGTCAACTTG+TGG 0.496901 2_1:+2302724 None:intergenic
CACCATCCTCCTCCTTCTCT+CGG 0.500291 2_1:+2302559 None:intergenic
CACTTATTAATTCATCCAAA+CGG 0.501081 2_1:+2300367 None:intergenic
ATGAGGCACAGCTTATTGCT+TGG 0.502747 2_1:-2302428 Msa0187560:CDS
AAATATCCAGTTGGGAGTGA+TGG 0.503498 2_1:+2300934 None:intergenic
TTAATTCACACACACTTGAA+AGG 0.506149 2_1:-2300832 Msa0187560:CDS
GATATTAGAGCATCTCCAAT+GGG 0.507222 2_1:-2300119 Msa0187560:three_prime_UTR
CATTTGAATTGGATCCATTG+AGG 0.507624 2_1:-2302635 Msa0187560:CDS
AGAAAGGTGGGTTGGAAATG+GGG 0.508550 2_1:+2301253 None:intergenic
GGGCCGGTTGGGCCGAGAGA+AGG 0.509409 2_1:-2302571 Msa0187560:CDS
AACTGTGATAGTAATGTTGA+AGG 0.511473 2_1:-2300545 Msa0187560:CDS
CCAACCGGCCCGTTATTGTC+GGG 0.512607 2_1:+2302583 None:intergenic
CCCCGTTAAGGACCCTCCAT+TGG 0.513158 2_1:-2300071 Msa0187560:three_prime_UTR
GTGTATGATAACTCATACCA+TGG 0.520501 2_1:+2302703 None:intergenic
GGAATGTTGTTGGTTAGGAT+TGG 0.521481 2_1:+2301204 None:intergenic
GGAGGGTCCTTAACGGGGAG+TGG 0.522087 2_1:+2300076 None:intergenic
GATTATCCTTGCTGGCTGTA+GGG 0.526008 2_1:-2300467 Msa0187560:CDS
ATTAGTTATTGGCATGGCAG+TGG 0.526180 2_1:-2300327 Msa0187560:three_prime_UTR
AAAATTGAAGAAATGGAGAA+TGG 0.526372 2_1:-2300877 Msa0187560:CDS
CGAACTATTTATAACAAACA+TGG 0.526568 2_1:+2302938 None:intergenic
GTATTGATTGGAGTGAAGAA+AGG 0.526703 2_1:+2301237 None:intergenic
AGAATGGTTTGAGTCACAAA+AGG 0.528973 2_1:-2300779 Msa0187560:CDS
CCCGACAATAACGGGCCGGT+TGG 0.531253 2_1:-2302583 Msa0187560:CDS
CCGGTTGGGCCGAGAGAAGG+AGG 0.533083 2_1:-2302568 Msa0187560:CDS
GGAGTGGTCCTTGTTAAGTA+AGG 0.533286 2_1:+2300092 None:intergenic
AGATTATCCTTGCTGGCTGT+AGG 0.533649 2_1:-2300468 Msa0187560:CDS
TGATTGGAGTGAAGAAAGGT+GGG 0.533702 2_1:+2301241 None:intergenic
ATAGTGATGCCTTCTTCAGA+TGG 0.535268 2_1:-2300580 Msa0187560:CDS
GCAAACCCTCCATCTGAAGA+AGG 0.535965 2_1:+2300571 None:intergenic
AGAGCTGAGAGGAAGTCAAA+TGG 0.537078 2_1:+2301051 None:intergenic
GGTAAGACCCACAAGTTGAC+GGG 0.538277 2_1:-2302732 Msa0187560:CDS
GTAATAAAATGTGTACTACT+TGG 0.539053 2_1:-2299957 Msa0187560:three_prime_UTR
AGCTCATGTTTCTTGTCGAG+TGG 0.541963 2_1:-2300629 Msa0187560:CDS
CGTTAAGGACCCTCCATTGG+AGG 0.542327 2_1:-2300068 Msa0187560:three_prime_UTR
TGGGTCTTACCCGAACTCAC+TGG 0.545145 2_1:+2302744 None:intergenic
TGAACTTGAGAATTTGAAAG+TGG 0.545632 2_1:+2301128 None:intergenic
TATGTTTGATGAAGAGGTAA+TGG 0.545889 2_1:+2301158 None:intergenic
GTGGGGAATGTGGACGGTGA+AGG 0.546274 2_1:-2300610 Msa0187560:CDS
CAGATAAATAGCTTCAAAGA+AGG 0.547152 2_1:-2301372 Msa0187560:CDS
GCTCATGTTTCTTGTCGAGT+GGG 0.548354 2_1:-2300628 Msa0187560:CDS
GTTGGTTAGGATTGGTGAAG+AGG 0.549410 2_1:+2301212 None:intergenic
GTCAGAGACAGATCAGTGTA+AGG 0.552279 2_1:-2302805 Msa0187560:CDS
TGAGAATTTGAAAGTGGCTG+TGG 0.559985 2_1:+2301134 None:intergenic
TTATTACTTCTTTATGCAAG+TGG 0.560226 2_1:+2299932 None:intergenic
TGGAGTGAAGAAAGGTGGGT+TGG 0.561597 2_1:+2301245 None:intergenic
TGATGCCTTCTTCAGATGGA+GGG 0.561884 2_1:-2300576 Msa0187560:CDS
TGATATTAGAGCATCTCCAA+TGG 0.563836 2_1:-2300120 Msa0187560:three_prime_UTR
TATTACTTCTTTATGCAAGT+GGG 0.564425 2_1:+2299933 None:intergenic
TTGGATGAATTAATAAGTGT+AGG 0.567829 2_1:-2300363 Msa0187560:three_prime_UTR
GAAGTTAGGTGTAATGATGC+TGG 0.568774 2_1:-2302522 Msa0187560:CDS
GTGAGACCCGTTAGTTACTC+AGG 0.569093 2_1:+2299990 None:intergenic
CTCATGTTTCTTGTCGAGTG+GGG 0.569487 2_1:-2300627 Msa0187560:CDS
GTTAGTTACTCAGGAGAGAG+AGG 0.570925 2_1:+2299999 None:intergenic
GACCTATTTAAGTCTCCTAC+CGG 0.573310 2_1:+2300155 None:intergenic
GGAAGAATTAGTTATTGGCA+TGG 0.577018 2_1:-2300333 Msa0187560:three_prime_UTR
AACACTGGATTCAAAACTAA+CGG 0.577037 2_1:-2302781 Msa0187560:CDS
GGGTAAGACCCACAAGTTGA+CGG 0.579828 2_1:-2302733 Msa0187560:CDS
ATTGAGTTCCCGTTAAGGAA+CGG 0.580857 2_1:-2300038 Msa0187560:three_prime_UTR
GTGATGCCTTCTTCAGATGG+AGG 0.582800 2_1:-2300577 Msa0187560:CDS
GGCCGAGAGAAGGAGGAGGA+TGG 0.583468 2_1:-2302561 Msa0187560:CDS
GAACACCTAAATGCATGTAT+GGG 0.584202 2_1:-2300735 Msa0187560:CDS
TCACAAAAGGAAACTGAGGA+AGG 0.584832 2_1:-2300766 Msa0187560:CDS
TAAAAGGTGACCATGTGCTA+GGG 0.586599 2_1:+2302388 None:intergenic
TAGAGTCATAAAGGCTAATG+TGG 0.586817 2_1:-2302496 Msa0187560:CDS
TCTCTCTCCTGAGTAACTAA+CGG 0.587505 2_1:-2299997 Msa0187560:three_prime_UTR
GATGAAGAGGTAATGGTCTG+TGG 0.593007 2_1:+2301165 None:intergenic
AGATCAGTGTAAGGTAACAC+TGG 0.594403 2_1:-2302796 Msa0187560:CDS
TGTGGCTATGTTTGATGAAG+AGG 0.596735 2_1:+2301152 None:intergenic
GACCATGTGCTAGGGTCATG+AGG 0.598936 2_1:+2302396 None:intergenic
GCGTTTCCAAAATATCCAGT+TGG 0.599293 2_1:+2300925 None:intergenic
CGAGAGAAGGAGGAGGATGG+TGG 0.600282 2_1:-2302558 Msa0187560:CDS
TGTGATAGTAATGTTGAAGG+AGG 0.600877 2_1:-2300542 Msa0187560:CDS
ATGTTGAAGGAGGAAGAACT+TGG 0.600995 2_1:-2300532 Msa0187560:CDS
AGACTTAAATAGGTCTCCTA+CGG 0.605396 2_1:-2300147 Msa0187560:three_prime_UTR
TTCTTGTCGAGTGGGGAATG+TGG 0.607119 2_1:-2300620 Msa0187560:CDS
ATAAATAGCTTCAAAGAAGG+TGG 0.607597 2_1:-2301369 Msa0187560:CDS
TGGATAGTACTATTGATGAA+TGG 0.608688 2_1:-2302476 Msa0187560:CDS
GTTGGGCCGAGAGAAGGAGG+AGG 0.619970 2_1:-2302565 Msa0187560:CDS
TTCTGCTACTGGATCTGATG+AGG 0.621739 2_1:-2302445 Msa0187560:CDS
CACAAAAGGAAACTGAGGAA+GGG 0.622438 2_1:-2300765 Msa0187560:CDS
AATTCACACACACTTGAAAG+GGG 0.623746 2_1:-2300830 Msa0187560:CDS
TGTCGAGTGGGGAATGTGGA+CGG 0.625379 2_1:-2300616 Msa0187560:CDS
TATAATCAGTGTAAGCGTGT+GGG 0.629877 2_1:-2300259 Msa0187560:three_prime_UTR
GCTCTAATATCACCTACCGT+AGG 0.630800 2_1:+2300131 None:intergenic
TGAGCCAACAATTATTGGCA+GGG 0.632053 2_1:-2300409 Msa0187560:three_prime_UTR
TTAAATAGGTCTCCTACGGT+AGG 0.634859 2_1:-2300143 Msa0187560:three_prime_UTR
TTATAATCAGTGTAAGCGTG+TGG 0.637530 2_1:-2300260 Msa0187560:three_prime_UTR
AACATGGAGTACTATTTCAG+AGG 0.639440 2_1:+2302954 None:intergenic
TAACGGGGACACAAAATGGA+GGG 0.642725 2_1:+2302981 None:intergenic
TTCGCAATATTAATGAAGCT+AGG 0.644020 2_1:-2302919 Msa0187560:five_prime_UTR
TGCCTCATGACCCTAGCACA+TGG 0.645951 2_1:-2302398 Msa0187560:CDS
CCAATGGAGGGTCCTTAACG+GGG 0.647949 2_1:+2300071 None:intergenic
ACTCGACAAGAAACATGAGC+TGG 0.648220 2_1:+2300631 None:intergenic
TTAGTTACTCAGGAGAGAGA+GGG 0.648431 2_1:+2300000 None:intergenic
TGAGAGGAAGTCAAATGGGG+TGG 0.650646 2_1:+2301056 None:intergenic
TGAGTCACAAAAGGAAACTG+AGG 0.655458 2_1:-2300770 Msa0187560:CDS
AACGGGGACACAAAATGGAG+GGG 0.665746 2_1:+2302982 None:intergenic
TTAACGGGGACACAAAATGG+AGG 0.666969 2_1:+2302980 None:intergenic
TATTAGAGCATCTCCAATGG+GGG 0.671314 2_1:-2300117 Msa0187560:three_prime_UTR
TATACCCGACAATAACGGGC+CGG 0.671866 2_1:-2302587 Msa0187560:CDS
AAGTTGACGGGTGTAGACCA+TGG 0.675286 2_1:-2302720 Msa0187560:CDS
AGCTGAGAGGAAGTCAAATG+GGG 0.678609 2_1:+2301053 None:intergenic
ATTAGAGCATCTCCAATGGG+GGG 0.701573 2_1:-2300116 Msa0187560:three_prime_UTR
ATATTAGAGCATCTCCAATG+GGG 0.709931 2_1:-2300118 Msa0187560:three_prime_UTR
GAGTCCAAAATAGAGCTGAG+AGG 0.726138 2_1:+2301040 None:intergenic
TATTTCAGAGGAAATTAACG+GGG 0.745503 2_1:+2302966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATCTTGTAATTTAAA+CGG + chr2_1:2300823-2300842 None:intergenic 10.0%
!! TTAATATTAATATTAAAGCT+AGG - chr2_1:2300838-2300857 Msa0187560:CDS 10.0%
!! ATTACAAAAATGAAGAAAAA+TGG - chr2_1:2300275-2300294 Msa0187560:three_prime_UTR 15.0%
!!! AGCAAAATAATATATTTTCA+TGG - chr2_1:2301204-2301223 Msa0187560:CDS 15.0%
!!! TTTGTTTATTTACTCATTTT+TGG - chr2_1:2302754-2302773 Msa0187560:CDS 15.0%
!! AAAATGAAGAAAAATGGTTT+AGG - chr2_1:2300281-2300300 Msa0187560:three_prime_UTR 20.0%
!! ATGATTGATACTTAAAATTG+TGG + chr2_1:2300672-2300691 None:intergenic 20.0%
!!! AGATTTTTTTTTTCCTACTT+TGG + chr2_1:2300719-2300738 None:intergenic 20.0%
!! AGAAAAGGAAGAAATTAAAT+TGG + chr2_1:2301126-2301145 None:intergenic 20.0%
!! ATTAAAATATACACCTCAAA+TGG + chr2_1:2301288-2301307 None:intergenic 20.0%
!! GTATAGATAAATTGAATTAG+TGG - chr2_1:2301489-2301508 Msa0187560:intron 20.0%
!!! ACATTTTTTGTTTTGGATTT+TGG + chr2_1:2301857-2301876 None:intergenic 20.0%
!! GTTTGATTATGAATTTCTTT+GGG + chr2_1:2301943-2301962 None:intergenic 20.0%
!! AGTTTGATTATGAATTTCTT+TGG + chr2_1:2301944-2301963 None:intergenic 20.0%
!! TTCACTAAAAATTGAAGAAA+TGG - chr2_1:2302056-2302075 Msa0187560:intron 20.0%
!! AAATAAAGTCTTCAATAGAA+TGG - chr2_1:2302145-2302164 Msa0187560:intron 20.0%
!! TTTACTAGAATGAAATTGTT+TGG - chr2_1:2302723-2302742 Msa0187560:CDS 20.0%
! ACTATTTCAGAGGAAATTAA+CGG + chr2_1:2299979-2299998 None:intergenic 25.0%
! CGAACTATTTATAACAAACA+TGG + chr2_1:2300005-2300024 None:intergenic 25.0%
!! TAAAGTACCTGAATTCTAAA+AGG + chr2_1:2300571-2300590 None:intergenic 25.0%
!!! TTTTTTTTCCTACTTTGGTT+AGG + chr2_1:2300714-2300733 None:intergenic 25.0%
! GAAAATGGAGAAAAATTCAT+GGG - chr2_1:2300889-2300908 Msa0187560:CDS 25.0%
! AAAAATAACGTGAAAGATCT+AGG + chr2_1:2300942-2300961 None:intergenic 25.0%
!!! TTTATTTTTTTCAACCTGAG+AGG - chr2_1:2300960-2300979 Msa0187560:CDS 25.0%
! CATTTAGATTAAGAGAAAGA+TGG + chr2_1:2301005-2301024 None:intergenic 25.0%
! CATCTTTCTCTTAATCTAAA+TGG - chr2_1:2301003-2301022 Msa0187560:CDS 25.0%
!! TGAAGACTATAATCTAAAAC+TGG - chr2_1:2301058-2301077 Msa0187560:CDS 25.0%
! CAATAATGTAGATGTAAATC+AGG + chr2_1:2301376-2301395 None:intergenic 25.0%
! CTGATTTACATCTACATTAT+TGG - chr2_1:2301374-2301393 Msa0187560:intron 25.0%
! GATAAATTGAATTAGTGGTA+CGG - chr2_1:2301494-2301513 Msa0187560:intron 25.0%
! ATAAATTGAATTAGTGGTAC+GGG - chr2_1:2301495-2301514 Msa0187560:intron 25.0%
!!! CATTAGGACATTTTTTGTTT+TGG + chr2_1:2301864-2301883 None:intergenic 25.0%
! AAAATTGAAGAAATGGAGAA+TGG - chr2_1:2302063-2302082 Msa0187560:intron 25.0%
! CACTTATTAATTCATCCAAA+CGG + chr2_1:2302576-2302595 None:intergenic 25.0%
! TTGGATGAATTAATAAGTGT+AGG - chr2_1:2302577-2302596 Msa0187560:CDS 25.0%
! TGTTTGGAAGAATTAGTTAT+TGG - chr2_1:2302602-2302621 Msa0187560:CDS 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr2_1:2302983-2303002 Msa0187560:five_prime_UTR 25.0%
TATTTCAGAGGAAATTAACG+GGG + chr2_1:2299977-2299996 None:intergenic 30.0%
CTATTTCAGAGGAAATTAAC+GGG + chr2_1:2299978-2299997 None:intergenic 30.0%
TTCGCAATATTAATGAAGCT+AGG - chr2_1:2300021-2300040 Msa0187560:three_prime_UTR 30.0%
AACACTGGATTCAAAACTAA+CGG - chr2_1:2300159-2300178 Msa0187560:three_prime_UTR 30.0%
ATGGTTTAGGTCATTTGAAT+TGG - chr2_1:2300294-2300313 Msa0187560:three_prime_UTR 30.0%
ATTTGAATTGGATCCATTGA+GGG - chr2_1:2300306-2300325 Msa0187560:three_prime_UTR 30.0%
TGGATAGTACTATTGATGAA+TGG - chr2_1:2300464-2300483 Msa0187560:CDS 30.0%
! TCAGGTACTTTAATTTATGC+TGG - chr2_1:2300579-2300598 Msa0187560:CDS 30.0%
!! AGTAAGTATGAGCTATTTTG+TGG - chr2_1:2300602-2300621 Msa0187560:CDS 30.0%
GGAAAATGGAGAAAAATTCA+TGG - chr2_1:2300888-2300907 Msa0187560:CDS 30.0%
! AATTGATAGTATACACGAGA+GGG + chr2_1:2301150-2301169 None:intergenic 30.0%
! AAATTGATAGTATACACGAG+AGG + chr2_1:2301151-2301170 None:intergenic 30.0%
AAAATATACACCTCAAATGG+AGG + chr2_1:2301285-2301304 None:intergenic 30.0%
TGATGAAGTCTCTAATGAAA+GGG + chr2_1:2301344-2301363 None:intergenic 30.0%
ATGATGAAGTCTCTAATGAA+AGG + chr2_1:2301345-2301364 None:intergenic 30.0%
! GAAGGTATGAAGTAATAAAC+TGG - chr2_1:2301533-2301552 Msa0187560:intron 30.0%
GTATGAAGTAATAAACTGGT+GGG - chr2_1:2301537-2301556 Msa0187560:intron 30.0%
TATGAAGTAATAAACTGGTG+GGG - chr2_1:2301538-2301557 Msa0187560:intron 30.0%
CAGATAAATAGCTTCAAAGA+AGG - chr2_1:2301568-2301587 Msa0187560:intron 30.0%
ATAAATAGCTTCAAAGAAGG+TGG - chr2_1:2301571-2301590 Msa0187560:intron 30.0%
CATCATCATTCTTCAAATCA+TGG - chr2_1:2301644-2301663 Msa0187560:intron 30.0%
! AATTTGGAATGTTGTTGGTT+AGG + chr2_1:2301744-2301763 None:intergenic 30.0%
TATGTTTGATGAAGAGGTAA+TGG + chr2_1:2301785-2301804 None:intergenic 30.0%
TGAACTTGAGAATTTGAAAG+TGG + chr2_1:2301815-2301834 None:intergenic 30.0%
!!! TTTGTTTTGGATTTTGGAGA+GGG + chr2_1:2301851-2301870 None:intergenic 30.0%
!!! TTTTGTTTTGGATTTTGGAG+AGG + chr2_1:2301852-2301871 None:intergenic 30.0%
TTAATTCACACACACTTGAA+AGG - chr2_1:2302108-2302127 Msa0187560:intron 30.0%
TAATTCACACACACTTGAAA+GGG - chr2_1:2302109-2302128 Msa0187560:intron 30.0%
AACTGTGATAGTAATGTTGA+AGG - chr2_1:2302395-2302414 Msa0187560:CDS 30.0%
! TTAATAAGTGTAGGCTTGTT+TGG - chr2_1:2302586-2302605 Msa0187560:CDS 30.0%
! ACGCTTACACTGATTATAAT+CGG + chr2_1:2302679-2302698 None:intergenic 30.0%
TATAATTGTCCGTTCCTTAA+CGG + chr2_1:2302914-2302933 None:intergenic 30.0%
AAGGAACGGACAATTATATA+AGG - chr2_1:2302916-2302935 Msa0187560:five_prime_UTR 30.0%
AAATTAACGGGGACACAAAA+TGG + chr2_1:2299966-2299985 None:intergenic 35.0%
! AACATGGAGTACTATTTCAG+AGG + chr2_1:2299989-2300008 None:intergenic 35.0%
GTGTATGATAACTCATACCA+TGG + chr2_1:2300240-2300259 None:intergenic 35.0%
CATTTGAATTGGATCCATTG+AGG - chr2_1:2300305-2300324 Msa0187560:three_prime_UTR 35.0%
TAGAGTCATAAAGGCTAATG+TGG - chr2_1:2300444-2300463 Msa0187560:exon 35.0%
!!! ATGGTCACCTTTTAGAATTC+AGG - chr2_1:2300561-2300580 Msa0187560:CDS 35.0%
! TTTTCTTGCCTAACCAAAGT+AGG - chr2_1:2300703-2300722 Msa0187560:CDS 35.0%
CAACATGCATATCCCAAAAA+GGG - chr2_1:2300753-2300772 Msa0187560:CDS 35.0%
TAGGAGAGACAAATCACTTA+AGG - chr2_1:2300857-2300876 Msa0187560:CDS 35.0%
AGACAAATCACTTAAGGTTG+TGG - chr2_1:2300863-2300882 Msa0187560:CDS 35.0%
AAATCACTTAAGGTTGTGGA+TGG - chr2_1:2300867-2300886 Msa0187560:CDS 35.0%
TTAAGGTTGTGGATGGAAAA+TGG - chr2_1:2300874-2300893 Msa0187560:CDS 35.0%
GATGAAGTCTCTAATGAAAG+GGG + chr2_1:2301343-2301362 None:intergenic 35.0%
!! GGGTGATTTGGTATTTAAGA+AGG - chr2_1:2301515-2301534 Msa0187560:intron 35.0%
GGTATGAAGTAATAAACTGG+TGG - chr2_1:2301536-2301555 Msa0187560:intron 35.0%
!! GTATTGATTGGAGTGAAGAA+AGG + chr2_1:2301706-2301725 None:intergenic 35.0%
! GGATGAATTTGGAATGTTGT+TGG + chr2_1:2301749-2301768 None:intergenic 35.0%
!!! TGTGGTTTTAGGGATGAATT+TGG + chr2_1:2301760-2301779 None:intergenic 35.0%
CGTTTCCAAAATATCCAGTT+GGG + chr2_1:2302017-2302036 None:intergenic 35.0%
GAAATGGAGAATGGTGAATT+AGG - chr2_1:2302072-2302091 Msa0187560:intron 35.0%
AATTCACACACACTTGAAAG+GGG - chr2_1:2302110-2302129 Msa0187560:intron 35.0%
AGAATGGTTTGAGTCACAAA+AGG - chr2_1:2302161-2302180 Msa0187560:intron 35.0%
GAACACCTAAATGCATGTAT+GGG - chr2_1:2302205-2302224 Msa0187560:intron 35.0%
TCTTTCCCATACATGCATTT+AGG + chr2_1:2302213-2302232 None:intergenic 35.0%
! AGAGTTAACTTTTGTCTGCA+TGG - chr2_1:2302230-2302249 Msa0187560:intron 35.0%
TGTGATAGTAATGTTGAAGG+AGG - chr2_1:2302398-2302417 Msa0187560:CDS 35.0%
CTGTTTGAGCCAACAATTAT+TGG - chr2_1:2302526-2302545 Msa0187560:CDS 35.0%
TGTTGTAGCTAAATTCCGTT+TGG - chr2_1:2302558-2302577 Msa0187560:CDS 35.0%
GGAAGAATTAGTTATTGGCA+TGG - chr2_1:2302607-2302626 Msa0187560:CDS 35.0%
TTATAATCAGTGTAAGCGTG+TGG - chr2_1:2302680-2302699 Msa0187560:CDS 35.0%
TATAATCAGTGTAAGCGTGT+GGG - chr2_1:2302681-2302700 Msa0187560:CDS 35.0%
AGACTTAAATAGGTCTCCTA+CGG - chr2_1:2302793-2302812 Msa0187560:CDS 35.0%
! TGATATTAGAGCATCTCCAA+TGG - chr2_1:2302820-2302839 Msa0187560:exon 35.0%
! GATATTAGAGCATCTCCAAT+GGG - chr2_1:2302821-2302840 Msa0187560:exon 35.0%
! ATATTAGAGCATCTCCAATG+GGG - chr2_1:2302822-2302841 Msa0187560:exon 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + chr2_1:2302884-2302903 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + chr2_1:2302885-2302904 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + chr2_1:2302888-2302907 None:intergenic 35.0%
GAAAAATTGAGTTCCCGTTA+AGG - chr2_1:2302897-2302916 Msa0187560:five_prime_UTR 35.0%
ATAATTGTCCGTTCCTTAAC+GGG + chr2_1:2302913-2302932 None:intergenic 35.0%
AGATCAGTGTAAGGTAACAC+TGG - chr2_1:2300144-2300163 Msa0187560:three_prime_UTR 40.0%
TCAGACAATGATTCCCTCAA+TGG + chr2_1:2300322-2300341 None:intergenic 40.0%
GTCGATATACCCGACAATAA+CGG - chr2_1:2300348-2300367 Msa0187560:three_prime_UTR 40.0%
TCGATATACCCGACAATAAC+GGG - chr2_1:2300349-2300368 Msa0187560:three_prime_UTR 40.0%
! GTACTGGTAATTGGGAAGTT+AGG - chr2_1:2300404-2300423 Msa0187560:three_prime_UTR 40.0%
GAAGTTAGGTGTAATGATGC+TGG - chr2_1:2300418-2300437 Msa0187560:three_prime_UTR 40.0%
! TGCTGGTGTTAGAGTCATAA+AGG - chr2_1:2300435-2300454 Msa0187560:three_prime_UTR 40.0%
TAAAAGGTGACCATGTGCTA+GGG + chr2_1:2300555-2300574 None:intergenic 40.0%
!!! CCTTTTTGGGATATGCATGT+TGG + chr2_1:2300755-2300774 None:intergenic 40.0%
CCAACATGCATATCCCAAAA+AGG - chr2_1:2300752-2300771 Msa0187560:CDS 40.0%
TGCATATCCCAAAAAGGGAT+TGG - chr2_1:2300758-2300777 Msa0187560:CDS 40.0%
! AGAGGATCCAATCCCTTTTT+GGG + chr2_1:2300768-2300787 None:intergenic 40.0%
! AAGAGGATCCAATCCCTTTT+TGG + chr2_1:2300769-2300788 None:intergenic 40.0%
TATACACGAGAGGGAAGAAA+AGG + chr2_1:2301141-2301160 None:intergenic 40.0%
TTCCAAGTTTCCTCCATTTG+AGG - chr2_1:2301272-2301291 Msa0187560:CDS 40.0%
AATTAGTGGTACGGGTGATT+TGG - chr2_1:2301503-2301522 Msa0187560:intron 40.0%
AAAGAAGGTGGTGTAGCAAT+AGG - chr2_1:2301583-2301602 Msa0187560:intron 40.0%
!! AAGAAAGGTGGGTTGGAAAT+GGG + chr2_1:2301691-2301710 None:intergenic 40.0%
TGATTGGAGTGAAGAAAGGT+GGG + chr2_1:2301702-2301721 None:intergenic 40.0%
TTGATTGGAGTGAAGAAAGG+TGG + chr2_1:2301703-2301722 None:intergenic 40.0%
!! GGTGAAGAGGTAGTATTGAT+TGG + chr2_1:2301718-2301737 None:intergenic 40.0%
! GGAATGTTGTTGGTTAGGAT+TGG + chr2_1:2301739-2301758 None:intergenic 40.0%
!! GGTAATGGTCTGTGGTTTTA+GGG + chr2_1:2301770-2301789 None:intergenic 40.0%
!! AGGTAATGGTCTGTGGTTTT+AGG + chr2_1:2301771-2301790 None:intergenic 40.0%
TGTGGCTATGTTTGATGAAG+AGG + chr2_1:2301791-2301810 None:intergenic 40.0%
TGAGAATTTGAAAGTGGCTG+TGG + chr2_1:2301809-2301828 None:intergenic 40.0%
! ACTTCCTCTCAGCTCTATTT+TGG - chr2_1:2301896-2301915 Msa0187560:intron 40.0%
ATAAAACCATCACTCCCAAC+TGG - chr2_1:2302000-2302019 Msa0187560:intron 40.0%
AAATATCCAGTTGGGAGTGA+TGG + chr2_1:2302009-2302028 None:intergenic 40.0%
! TCACTCCCAACTGGATATTT+TGG - chr2_1:2302009-2302028 Msa0187560:intron 40.0%
GCGTTTCCAAAATATCCAGT+TGG + chr2_1:2302018-2302037 None:intergenic 40.0%
TGAGTCACAAAAGGAAACTG+AGG - chr2_1:2302170-2302189 Msa0187560:intron 40.0%
TCACAAAAGGAAACTGAGGA+AGG - chr2_1:2302174-2302193 Msa0187560:intron 40.0%
CACAAAAGGAAACTGAGGAA+GGG - chr2_1:2302175-2302194 Msa0187560:intron 40.0%
GAAACTGAGGAAGGGAAATT+TGG - chr2_1:2302183-2302202 Msa0187560:intron 40.0%
GGAACACCTAAATGCATGTA+TGG - chr2_1:2302204-2302223 Msa0187560:intron 40.0%
! AACTTTTGTCTGCATGGAAG+AGG - chr2_1:2302236-2302255 Msa0187560:intron 40.0%
ATAGTGATGCCTTCTTCAGA+TGG - chr2_1:2302360-2302379 Msa0187560:intron 40.0%
ATGTTGAAGGAGGAAGAACT+TGG - chr2_1:2302408-2302427 Msa0187560:CDS 40.0%
TTGAGCCAACAATTATTGGC+AGG - chr2_1:2302530-2302549 Msa0187560:CDS 40.0%
TGAGCCAACAATTATTGGCA+GGG - chr2_1:2302531-2302550 Msa0187560:CDS 40.0%
ACTACCCTGCCAATAATTGT+TGG + chr2_1:2302538-2302557 None:intergenic 40.0%
ATTAGTTATTGGCATGGCAG+TGG - chr2_1:2302613-2302632 Msa0187560:CDS 40.0%
TTTAAGTCTCCTACCGGAAA+CGG + chr2_1:2302782-2302801 None:intergenic 40.0%
TTCCGGTAGGAGACTTAAAT+AGG - chr2_1:2302783-2302802 Msa0187560:CDS 40.0%
GACCTATTTAAGTCTCCTAC+CGG + chr2_1:2302788-2302807 None:intergenic 40.0%
TTAAATAGGTCTCCTACGGT+AGG - chr2_1:2302797-2302816 Msa0187560:CDS 40.0%
! TATTAGAGCATCTCCAATGG+GGG - chr2_1:2302823-2302842 Msa0187560:exon 40.0%
ATTGAGTTCCCGTTAAGGAA+CGG - chr2_1:2302902-2302921 Msa0187560:five_prime_UTR 40.0%
TTAGTTACTCAGGAGAGAGA+GGG + chr2_1:2302943-2302962 None:intergenic 40.0%
TCTCTCTCCTGAGTAACTAA+CGG - chr2_1:2302943-2302962 Msa0187560:five_prime_UTR 40.0%
TAACGGGGACACAAAATGGA+GGG + chr2_1:2299962-2299981 None:intergenic 45.0%
TTAACGGGGACACAAAATGG+AGG + chr2_1:2299963-2299982 None:intergenic 45.0%
GTCAGAGACAGATCAGTGTA+AGG - chr2_1:2300135-2300154 Msa0187560:three_prime_UTR 45.0%
!! AGGATGGTGGTACTGGTAAT+TGG - chr2_1:2300395-2300414 Msa0187560:three_prime_UTR 45.0%
!! GGATGGTGGTACTGGTAATT+GGG - chr2_1:2300396-2300415 Msa0187560:three_prime_UTR 45.0%
TGGCTATCATCTTCTGCTAC+TGG - chr2_1:2300484-2300503 Msa0187560:CDS 45.0%
TTCTGCTACTGGATCTGATG+AGG - chr2_1:2300495-2300514 Msa0187560:CDS 45.0%
ATGAGGCACAGCTTATTGCT+TGG - chr2_1:2300512-2300531 Msa0187560:CDS 45.0%
TGAGGCACAGCTTATTGCTT+GGG - chr2_1:2300513-2300532 Msa0187560:CDS 45.0%
CTAAAAGGTGACCATGTGCT+AGG + chr2_1:2300556-2300575 None:intergenic 45.0%
ATTGGATCCTCTTCCGTGAA+TGG - chr2_1:2300776-2300795 Msa0187560:CDS 45.0%
TCACTAGACCTCTCCATTCA+CGG + chr2_1:2300792-2300811 None:intergenic 45.0%
CACCTCAAATGGAGGAAACT+TGG + chr2_1:2301277-2301296 None:intergenic 45.0%
!! AGAAAGGTGGGTTGGAAATG+GGG + chr2_1:2301690-2301709 None:intergenic 45.0%
!! GAAGAAAGGTGGGTTGGAAA+TGG + chr2_1:2301692-2301711 None:intergenic 45.0%
! GTTGGTTAGGATTGGTGAAG+AGG + chr2_1:2301731-2301750 None:intergenic 45.0%
! GATGAAGAGGTAATGGTCTG+TGG + chr2_1:2301778-2301797 None:intergenic 45.0%
AAGTCAAATGGGGTGGCATT+AGG + chr2_1:2301880-2301899 None:intergenic 45.0%
AGCTGAGAGGAAGTCAAATG+GGG + chr2_1:2301890-2301909 None:intergenic 45.0%
GAGCTGAGAGGAAGTCAAAT+GGG + chr2_1:2301891-2301910 None:intergenic 45.0%
AGAGCTGAGAGGAAGTCAAA+TGG + chr2_1:2301892-2301911 None:intergenic 45.0%
GAGTCCAAAATAGAGCTGAG+AGG + chr2_1:2301903-2301922 None:intergenic 45.0%
ACTCGACAAGAAACATGAGC+TGG + chr2_1:2302312-2302331 None:intergenic 45.0%
AGCTCATGTTTCTTGTCGAG+TGG - chr2_1:2302311-2302330 Msa0187560:intron 45.0%
GCTCATGTTTCTTGTCGAGT+GGG - chr2_1:2302312-2302331 Msa0187560:intron 45.0%
CTCATGTTTCTTGTCGAGTG+GGG - chr2_1:2302313-2302332 Msa0187560:intron 45.0%
TGATGCCTTCTTCAGATGGA+GGG - chr2_1:2302364-2302383 Msa0187560:intron 45.0%
GAGCCAAAGATTATCCTTGC+TGG - chr2_1:2302465-2302484 Msa0187560:CDS 45.0%
CAGCCAGCAAGGATAATCTT+TGG + chr2_1:2302471-2302490 None:intergenic 45.0%
! AGATTATCCTTGCTGGCTGT+AGG - chr2_1:2302472-2302491 Msa0187560:CDS 45.0%
! GATTATCCTTGCTGGCTGTA+GGG - chr2_1:2302473-2302492 Msa0187560:CDS 45.0%
GCTCTAATATCACCTACCGT+AGG + chr2_1:2302812-2302831 None:intergenic 45.0%
! ATTAGAGCATCTCCAATGGG+GGG - chr2_1:2302824-2302843 Msa0187560:exon 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr2_1:2302851-2302870 None:intergenic 45.0%
GTTAGTTACTCAGGAGAGAG+AGG + chr2_1:2302944-2302963 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG - chr2_1:2302944-2302963 Msa0187560:five_prime_UTR 45.0%
AACGGGGACACAAAATGGAG+GGG + chr2_1:2299961-2299980 None:intergenic 50.0%
GTCAAGCAGACCAGTGAGTT+CGG - chr2_1:2300186-2300205 Msa0187560:three_prime_UTR 50.0%
TCAAGCAGACCAGTGAGTTC+GGG - chr2_1:2300187-2300206 Msa0187560:three_prime_UTR 50.0%
! GGGTAAGACCCACAAGTTGA+CGG - chr2_1:2300207-2300226 Msa0187560:three_prime_UTR 50.0%
! GGTAAGACCCACAAGTTGAC+GGG - chr2_1:2300208-2300227 Msa0187560:three_prime_UTR 50.0%
GTCTACACCCGTCAACTTGT+GGG + chr2_1:2300218-2300237 None:intergenic 50.0%
! AAGTTGACGGGTGTAGACCA+TGG - chr2_1:2300220-2300239 Msa0187560:three_prime_UTR 50.0%
!! TATACCCGACAATAACGGGC+CGG - chr2_1:2300353-2300372 Msa0187560:three_prime_UTR 50.0%
ATCCTCTTCCGTGAATGGAG+AGG - chr2_1:2300781-2300800 Msa0187560:CDS 50.0%
GCACGAGATTAGATCCTCTC+AGG + chr2_1:2300977-2300996 None:intergenic 50.0%
TGGAGTGAAGAAAGGTGGGT+TGG + chr2_1:2301698-2301717 None:intergenic 50.0%
TGAGAGGAAGTCAAATGGGG+TGG + chr2_1:2301887-2301906 None:intergenic 50.0%
TTCTTGTCGAGTGGGGAATG+TGG - chr2_1:2302320-2302339 Msa0187560:intron 50.0%
GTGATGCCTTCTTCAGATGG+AGG - chr2_1:2302363-2302382 Msa0187560:intron 50.0%
GCAAACCCTCCATCTGAAGA+AGG + chr2_1:2302372-2302391 None:intergenic 50.0%
! GTTTTACCCTACAGCCAGCA+AGG + chr2_1:2302482-2302501 None:intergenic 50.0%
!!! CTCATTTTTGGCGCCGTTTC+CGG - chr2_1:2302766-2302785 Msa0187560:CDS 50.0%
GTTAAGTAAGGACCCCCCAT+TGG + chr2_1:2302839-2302858 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG - chr2_1:2302840-2302859 Msa0187560:five_prime_UTR 50.0%
TCCAATGGAGGGTCCTTAAC+GGG + chr2_1:2302873-2302892 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG + chr2_1:2302874-2302893 None:intergenic 50.0%
GTGAGACCCGTTAGTTACTC+AGG + chr2_1:2302953-2302972 None:intergenic 50.0%
TGGGTCTTACCCGAACTCAC+TGG + chr2_1:2300199-2300218 None:intergenic 55.0%
GGTCTACACCCGTCAACTTG+TGG + chr2_1:2300219-2300238 None:intergenic 55.0%
CACCATCCTCCTCCTTCTCT+CGG + chr2_1:2300384-2300403 None:intergenic 55.0%
! AAGGAGGAGGATGGTGGTAC+TGG - chr2_1:2300388-2300407 Msa0187560:three_prime_UTR 55.0%
TGCCTCATGACCCTAGCACA+TGG - chr2_1:2300542-2300561 Msa0187560:CDS 55.0%
GACCATGTGCTAGGGTCATG+AGG + chr2_1:2300547-2300566 None:intergenic 55.0%
GACCTCTCCATTCACGGAAG+AGG + chr2_1:2300786-2300805 None:intergenic 55.0%
TGTCGAGTGGGGAATGTGGA+CGG - chr2_1:2302324-2302343 Msa0187560:intron 55.0%
!! TTTTTGGCGCCGTTTCCGGT+AGG - chr2_1:2302770-2302789 Msa0187560:CDS 55.0%
ACAAGGACCACTCCCCGTTA+AGG - chr2_1:2302857-2302876 Msa0187560:five_prime_UTR 55.0%
CCAATGGAGGGTCCTTAACG+GGG + chr2_1:2302872-2302891 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG - chr2_1:2302872-2302891 Msa0187560:five_prime_UTR 55.0%
CCAACCGGCCCGTTATTGTC+GGG + chr2_1:2300360-2300379 None:intergenic 60.0%
CCCAACCGGCCCGTTATTGT+CGG + chr2_1:2300361-2300380 None:intergenic 60.0%
!! CCGACAATAACGGGCCGGTT+GGG - chr2_1:2300358-2300377 Msa0187560:three_prime_UTR 60.0%
CGAGAGAAGGAGGAGGATGG+TGG - chr2_1:2300382-2300401 Msa0187560:three_prime_UTR 60.0%
GGTTGGAAATGGGGCTGTGG+CGG + chr2_1:2301681-2301700 None:intergenic 60.0%
!! GTGGGTTGGAAATGGGGCTG+TGG + chr2_1:2301684-2301703 None:intergenic 60.0%
GTGGGGAATGTGGACGGTGA+AGG - chr2_1:2302330-2302349 Msa0187560:intron 60.0%
CCCCGTTAAGGACCCTCCAT+TGG - chr2_1:2302869-2302888 Msa0187560:five_prime_UTR 60.0%
!! CCCGACAATAACGGGCCGGT+TGG - chr2_1:2300357-2300376 Msa0187560:three_prime_UTR 65.0%
CCTCCTTCTCTCGGCCCAAC+CGG + chr2_1:2300375-2300394 None:intergenic 65.0%
GTTGGGCCGAGAGAAGGAGG+AGG - chr2_1:2300375-2300394 Msa0187560:three_prime_UTR 65.0%
GGCCGAGAGAAGGAGGAGGA+TGG - chr2_1:2300379-2300398 Msa0187560:three_prime_UTR 65.0%
GGGGCTGTGGCGGTGAGTTT+GGG + chr2_1:2301671-2301690 None:intergenic 65.0%
TGGGGCTGTGGCGGTGAGTT+TGG + chr2_1:2301672-2301691 None:intergenic 65.0%
GGAGGGTCCTTAACGGGGAG+TGG + chr2_1:2302867-2302886 None:intergenic 65.0%
CCGGTTGGGCCGAGAGAAGG+AGG - chr2_1:2300372-2300391 Msa0187560:three_prime_UTR 70.0%
GGGCCGGTTGGGCCGAGAGA+AGG - chr2_1:2300369-2300388 Msa0187560:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2299938 2303024 2299938 ID=Msa0187560;Name=Msa0187560
chr2_1 mRNA 2299938 2303024 2299938 ID=Msa0187560-mRNA-1;Parent=Msa0187560;Name=Msa0187560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=195|1|1|1|1|1|2|518|461
chr2_1 exon 2299938 2301391 2299938 ID=Msa0187560-mRNA-1:exon:1101;Parent=Msa0187560-mRNA-1
chr2_1 exon 2302380 2303024 2302380 ID=Msa0187560-mRNA-1:exon:1100;Parent=Msa0187560-mRNA-1
chr2_1 five_prime_UTR 2302830 2303024 2302830 ID=Msa0187560-mRNA-1:five_prime_utr;Parent=Msa0187560-mRNA-1
chr2_1 CDS 2302380 2302829 2302380 ID=Msa0187560-mRNA-1:cds;Parent=Msa0187560-mRNA-1
chr2_1 CDS 2300456 2301391 2300456 ID=Msa0187560-mRNA-1:cds;Parent=Msa0187560-mRNA-1
chr2_1 three_prime_UTR 2299938 2300455 2299938 ID=Msa0187560-mRNA-1:three_prime_utr;Parent=Msa0187560-mRNA-1
Gene Sequence

>Msa0187560

ATGTCAGAGACAGATCAGTGTAAGGTAACACTGGATTCAAAACTAACGGTTGTGTCAAGCAGACCAGTGAGTTCGGGTAAGACCCACAAGTTGACGGGTGTAGACCATGGTATGAGTTATCATACACTGCATTTGATATACTATTACAAAAATGAAGAAAAATGGTTTAGGTCATTTGAATTGGATCCATTGAGGGAATCATTGTCTGAAGTTTTGTCGATATACCCGACAATAACGGGCCGGTTGGGCCGAGAGAAGGAGGAGGATGGTGGTACTGGTAATTGGGAAGTTAGGTGTAATGATGCTGGTGTTAGAGTCATAAAGGCTAATGTGGATAGTACTATTGATGAATGGCTATCATCTTCTGCTACTGGATCTGATGAGGCACAGCTTATTGCTTGGGATGATATGCCTCATGACCCTAGCACATGGTCACCTTTTAGAATTCAGATAAATAGCTTCAAAGAAGGTGGTGTAGCAATAGGACTAAGTTTTAGTCACATGCTTTCTGATTTAACTTTTGCATCATCATTCTTCAAATCATGGACCCAAACTCACCGCCACAGCCCCATTTCCAACCCACCTTTCTTCACTCCAATCAATACTACCTCTTCACCAATCCTAACCAACAACATTCCAAATTCATCCCTAAAACCACAGACCATTACCTCTTCATCAAACATAGCCACAGCCACTTTCAAATTCTCAAGTTCAATCATGAAACATTCCCTCTCCAAAATCCAAAACAAAAAATGTCCTAATGCCACCCCATTTGACTTCCTCTCAGCTCTATTTTGGACTCGTGTTGCTCACTTGAATCCCAAAGAAATTCATAATCAAACTCACTCTTTATCAATCTGCAGAGACTTCAGAAAGCTAATAAAACCATCACTCCCAACTGGATATTTTGGAAACGCGTTACATTTTTCAAATCTTTCACTAAAAATTGAAGAAATGGAGAATGGTGAATTAGGAAACGTAGCAAGTTTAATTCACACACACTTGAAAGGGGTTACAGATAAAGAAATAAAGTCTTCAATAGAATGGTTTGAGTCACAAAAGGAAACTGAGGAAGGGAAATTTGGAACACCTAAATGCATGTATGGGAAAGAGTTAACTTTTGTCTGCATGGAAGAGGAAGAGACAGCATCATTGTTGTATGAATCAATGTTTTGTGATAGTGAGAAACCAGCTCATGTTTCTTGTCGAGTGGGGAATGTGGACGGTGAAGGTTTGATTATAGTGATGCCTTCTTCAGATGGAGGGTTTGCAAGAACTGTGATAGTAATGTTGAAGGAGGAAGAACTTGGTAAATTATGCAATGATCAAGAAATATTGAAGCTTGAGCCAAAGATTATCCTTGCTGGCTGTAGGGTAAAACGTTGA
Protein sequence

>Msa0187560

MSETDQCKVTLDSKLTVVSSRPVSSGKTHKLTGVDHGMSYHTLHLIYYYKNEEKWFRSFELDPLRESLSEVLSIYPTITGRLGREKEEDGGTGNWEVRCNDAGVRVIKANVDSTIDEWLSSSATGSDEAQLIAWDDMPHDPSTWSPFRIQINSFKEGGVAIGLSFSHMLSDLTFASSFFKSWTQTHRHSPISNPPFFTPINTTSSPILTNNIPNSSLKPQTITSSSNIATATFKFSSSIMKHSLSKIQNKKCPNATPFDFLSALFWTRVAHLNPKEIHNQTHSLSICRDFRKLIKPSLPTGYFGNALHFSNLSLKIEEMENGELGNVASLIHTHLKGVTDKEIKSSIEWFESQKETEEGKFGTPKCMYGKELTFVCMEEEETASLLYESMFCDSEKPAHVSCRVGNVDGEGLIIVMPSSDGGFARTVIVMLKEEELGKLCNDQEILKLEPKIILAGCRVKR*