AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290040 MtrunA17_Chr2g0309511 86.331 417 20 3 1 380 1 417 0.0 736
Msa0290040 MtrunA17_Chr2g0309521 78.657 417 52 3 1 380 1 417 0.0 676
Msa0290040 MtrunA17_Chr2g0309541 76.540 422 53 5 1 380 1 418 0.0 647
Msa0290040 MtrunA17_Chr2g0318911 73.571 420 69 5 1 380 1 418 0.0 628
Msa0290040 MtrunA17_Chr1g0199991 50.773 388 146 7 34 380 28 411 3.01e-135 395
Msa0290040 MtrunA17_Chr1g0199971 48.062 387 160 6 33 380 27 411 5.08e-125 369
Msa0290040 MtrunA17_Chr7g0219051 43.961 414 176 10 10 376 11 415 1.77e-117 350
Msa0290040 MtrunA17_Chr3g0118851 44.444 387 165 10 34 380 69 445 5.83e-107 323
Msa0290040 MtrunA17_Chr3g0118841 42.894 387 170 10 34 380 70 445 1.47e-105 320
Msa0290040 MtrunA17_Chr4g0038311 42.548 416 180 14 10 376 9 414 3.32e-104 315
Msa0290040 MtrunA17_Chr4g0068841 41.014 434 187 12 8 380 7 432 1.92e-99 304
Msa0290040 MtrunA17_Chr3g0090331 40.152 396 186 10 27 380 58 444 4.51e-98 301
Msa0290040 MtrunA17_Chr3g0118881 41.162 396 173 11 34 380 69 453 3.37e-97 299
Msa0290040 MtrunA17_Chr1g0153881 41.146 384 171 10 35 380 86 452 1.18e-94 292
Msa0290040 MtrunA17_Chr4g0047861 39.018 387 184 9 43 380 57 440 1.33e-92 286
Msa0290040 MtrunA17_Chr2g0281621 38.263 426 204 11 7 380 2 420 4.19e-92 285
Msa0290040 MtrunA17_Chr4g0020241 41.927 384 175 11 34 380 69 441 7.27e-92 285
Msa0290040 MtrunA17_Chr4g0068861 39.286 420 195 11 9 376 60 471 2.10e-91 283
Msa0290040 MtrunA17_Chr3g0118831 40.365 384 148 11 35 380 74 414 1.36e-86 270
Msa0290040 MtrunA17_Chr2g0281641 40.950 337 153 6 89 380 7 342 1.11e-83 260
Msa0290040 MtrunA17_Chr1g0153941 37.592 407 182 10 34 380 73 467 2.32e-83 263
Msa0290040 MtrunA17_Chr3g0118891 38.575 407 163 12 13 380 54 412 3.74e-83 261
Msa0290040 MtrunA17_Chr3g0118861 38.987 395 151 11 34 380 71 423 2.60e-82 259
Msa0290040 MtrunA17_Chr3g0126031 34.465 383 206 8 41 380 30 410 2.42e-71 231
Msa0290040 MtrunA17_Chr5g0431301 34.109 387 206 8 41 380 31 415 1.42e-70 229
Msa0290040 MtrunA17_Chr2g0304931 34.586 399 200 11 34 384 34 419 5.71e-70 227
Msa0290040 MtrunA17_Chr3g0094811 33.500 400 201 14 35 384 27 411 4.63e-67 219
Msa0290040 MtrunA17_Chr8g0385871 33.726 424 216 16 6 377 3 413 5.28e-67 219
Msa0290040 MtrunA17_Chr3g0131731 34.033 429 218 16 10 384 1 418 3.13e-66 218
Msa0290040 MtrunA17_Chr3g0126051 32.021 381 212 9 41 376 35 413 2.05e-65 216
Msa0290040 MtrunA17_Chr7g0221551 31.980 394 203 13 43 384 34 414 2.79e-60 202
Msa0290040 MtrunA17_Chr8g0338461 30.324 432 214 14 32 380 23 450 9.12e-52 180
Msa0290040 MtrunA17_Chr7g0249431 29.295 454 220 15 36 394 24 471 1.92e-50 177
Msa0290040 MtrunA17_Chr7g0234051 28.837 430 218 12 30 375 20 445 2.67e-48 171
Msa0290040 MtrunA17_Chr1g0204191 32.520 369 208 16 35 377 88 441 5.44e-45 162
Msa0290040 MtrunA17_Chr1g0165811 37.449 243 103 8 35 238 27 259 5.87e-45 156
Msa0290040 MtrunA17_Chr7g0234041 29.567 416 200 15 43 375 30 435 6.68e-45 161
Msa0290040 MtrunA17_Chr1g0153931 44.199 181 65 4 42 187 78 257 2.94e-44 154
Msa0290040 MtrunA17_Chr2g0285351 28.058 417 238 14 17 380 17 424 1.70e-34 133
Msa0290040 MtrunA17_Chr1g0153921 38.378 185 95 6 201 380 1 171 1.10e-33 125
Msa0290040 MtrunA17_Chr4g0009681 28.297 364 205 13 65 380 67 422 8.67e-33 128
Msa0290040 MtrunA17_Chr2g0285371 28.021 389 214 15 48 380 46 424 1.93e-32 127
Msa0290040 MtrunA17_Chr3g0133011 27.314 443 240 15 6 380 23 451 3.53e-32 127
Msa0290040 MtrunA17_Chr4g0009671 27.394 376 203 11 60 380 30 390 1.33e-31 124
Msa0290040 MtrunA17_Chr4g0009701 28.065 367 202 14 65 380 70 425 4.02e-31 123
Msa0290040 MtrunA17_Chr4g0009711 26.374 364 212 12 65 380 70 425 6.32e-31 123
Msa0290040 MtrunA17_Chr2g0285381 26.842 380 223 12 48 380 49 420 9.14e-31 122
Msa0290040 MtrunA17_Chr4g0009661 27.273 363 210 11 65 380 70 425 1.14e-30 122
Msa0290040 MtrunA17_Chr4g0028241 27.368 380 199 12 21 351 60 411 1.25e-29 119
Msa0290040 MtrunA17_Chr4g0009651 26.944 360 207 13 65 376 70 421 6.56e-28 114
Msa0290040 MtrunA17_Chr3g0093971 24.806 387 231 12 43 380 30 405 9.25e-27 111
Msa0290040 MtrunA17_Chr4g0009721 27.072 362 214 14 43 380 39 374 3.63e-26 108
Msa0290040 MtrunA17_Chr4g0028271 29.129 333 186 12 54 351 101 418 9.16e-26 108
Msa0290040 MtrunA17_Chr2g0327371 30.882 204 115 6 55 237 87 285 1.55e-25 108
Msa0290040 MtrunA17_Chr1g0171411 33.673 196 98 4 54 220 87 279 7.87e-25 105
Msa0290040 MtrunA17_Chr2g0327381 28.037 214 118 5 54 236 98 306 5.13e-24 103
Msa0290040 MtrunA17_Chr4g0009641 28.080 349 211 13 60 380 65 401 5.95e-24 102
Msa0290040 MtrunA17_Chr1g0199171 26.901 342 182 12 54 351 94 411 6.97e-24 103
Msa0290040 MtrunA17_Chr4g0028261 28.614 332 190 12 54 351 122 440 2.05e-23 102
Msa0290040 MtrunA17_Chr2g0327401 25.893 336 194 12 54 351 104 422 2.98e-23 101
Msa0290040 MtrunA17_Chr4g0028281 25.672 335 191 12 54 349 99 414 4.23e-23 100
Msa0290040 MtrunA17_Chr5g0447441 25.000 340 196 12 64 365 55 373 4.65e-23 100
Msa0290040 MtrunA17_Chr7g0229651 27.805 205 128 6 187 374 1 202 2.37e-21 91.3
Msa0290040 MtrunA17_Chr4g0044051 24.930 357 189 15 57 365 52 377 3.29e-20 92.0
Msa0290040 MtrunA17_Chr7g0229631 45.652 92 42 5 36 124 31 117 5.04e-16 74.7
Msa0290040 MtrunA17_Chr7g0229611 48.529 68 30 3 42 106 28 93 3.74e-14 68.2
Msa0290040 MtrunA17_Chr1g0165821 28.814 118 75 3 265 376 14 128 2.38e-13 68.2
Msa0290040 MtrunA17_Chr7g0229641 51.020 49 24 0 136 184 44 92 5.07e-13 64.7
Msa0290040 MtrunA17_Chr7g0229621 45.946 74 34 4 36 106 23 93 2.23e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290040 AT4G30810.1 55.448 413 134 8 9 380 14 417 5.03e-157 451
Msa0290040 AT2G35780.1 49.246 398 151 8 26 380 17 406 3.75e-130 382
Msa0290040 AT3G07990.1 46.787 389 162 7 33 380 28 412 9.39e-124 365
Msa0290040 AT4G30610.1 45.178 394 167 7 33 380 27 417 5.10e-113 338
Msa0290040 AT2G24000.1 45.161 403 170 10 33 388 25 423 5.15e-109 328
Msa0290040 AT3G02110.1 41.190 420 190 9 9 376 8 422 6.62e-109 328
Msa0290040 AT2G24010.1 46.272 389 161 10 33 380 25 406 8.10e-109 327
Msa0290040 AT2G24010.2 44.307 404 162 11 33 380 25 421 2.28e-103 314
Msa0290040 AT2G35770.1 41.278 407 187 9 9 376 13 406 3.21e-99 303
Msa0290040 AT5G23210.3 40.528 417 181 11 22 376 35 446 3.88e-98 300
Msa0290040 AT5G23210.1 40.431 418 182 11 21 376 34 446 1.30e-97 300
Msa0290040 AT2G24010.3 41.667 420 158 11 42 380 4 417 1.38e-96 296
Msa0290040 AT1G61130.1 38.686 411 201 11 16 380 10 415 7.94e-93 286
Msa0290040 AT5G08260.1 38.519 405 183 10 34 380 34 430 1.35e-91 284
Msa0290040 AT1G11080.1 38.028 426 204 11 12 380 22 444 2.60e-91 283
Msa0290040 AT1G11080.2 38.028 426 204 11 12 380 22 444 2.85e-91 283
Msa0290040 AT3G63470.1 40.053 377 177 10 43 380 85 451 4.15e-91 283
Msa0290040 AT2G24000.2 43.164 373 158 10 33 388 25 360 6.15e-91 280
Msa0290040 AT4G15100.1 39.206 403 189 11 31 380 37 436 2.08e-89 278
Msa0290040 AT2G24010.4 43.733 359 140 10 42 344 4 356 5.50e-87 268
Msa0290040 AT3G17180.2 37.406 401 196 9 34 382 34 431 2.71e-86 269
Msa0290040 AT3G17180.1 37.531 397 193 9 34 378 34 427 2.49e-85 268
Msa0290040 AT5G23210.5 40.115 349 149 7 86 376 5 351 8.23e-81 254
Msa0290040 AT5G23210.4 40.000 345 147 7 90 376 8 350 3.62e-80 251
Msa0290040 AT5G23210.2 40.000 345 147 7 90 376 8 350 1.70e-79 250
Msa0290040 AT3G52020.1 38.303 389 189 14 33 380 74 452 3.00e-78 250
Msa0290040 AT2G05850.1 36.573 391 193 12 34 380 59 438 1.31e-76 245
Msa0290040 AT1G43780.1 33.256 430 231 11 1 380 1 424 6.71e-73 236
Msa0290040 AT3G52000.1 36.074 377 192 12 43 380 67 433 9.90e-71 230
Msa0290040 AT5G42240.1 34.961 389 203 9 35 376 29 414 6.65e-70 228
Msa0290040 AT2G12480.3 33.252 409 223 10 11 376 6 407 1.83e-69 226
Msa0290040 AT3G52010.1 33.929 392 201 14 34 380 60 438 4.02e-68 223
Msa0290040 AT5G42230.1 32.637 383 209 8 41 376 30 410 4.39e-66 218
Msa0290040 AT5G42230.2 32.637 383 209 8 41 376 30 410 4.39e-66 218
Msa0290040 AT2G33530.1 33.178 428 224 15 8 384 3 419 1.10e-63 211
Msa0290040 AT1G28110.1 33.501 397 204 14 37 384 30 415 1.61e-60 202
Msa0290040 AT1G28110.2 33.501 397 204 14 37 384 30 415 1.61e-60 202
Msa0290040 AT2G12480.4 31.373 408 208 10 11 376 6 383 2.68e-60 202
Msa0290040 AT2G12480.2 30.529 416 215 11 11 384 6 389 1.47e-58 197
Msa0290040 AT2G12480.1 30.882 408 208 11 11 376 6 381 1.70e-58 197
Msa0290040 AT4G12910.2 29.469 414 207 10 43 375 38 447 3.21e-54 186
Msa0290040 AT4G12910.1 29.469 414 207 10 43 375 38 447 5.30e-54 186
Msa0290040 AT3G25420.1 29.314 423 208 12 43 380 33 449 2.21e-51 179
Msa0290040 AT3G56540.1 44.324 185 64 6 33 181 74 255 3.43e-40 144
Msa0290040 AT2G22990.4 28.723 376 208 12 43 375 26 384 4.30e-37 139
Msa0290040 AT2G22990.3 28.723 376 208 12 43 375 26 384 6.87e-37 139
Msa0290040 AT2G22990.1 28.723 376 208 12 43 375 26 384 7.29e-37 139
Msa0290040 AT2G23000.1 28.906 384 201 15 42 375 27 388 1.37e-36 138
Msa0290040 AT2G23000.2 28.906 384 201 15 42 375 27 388 1.37e-36 138
Msa0290040 AT2G22920.1 27.586 377 211 10 43 375 28 386 4.43e-35 134
Msa0290040 AT2G22920.2 27.586 377 211 10 43 375 28 386 8.40e-35 133
Msa0290040 AT2G22970.4 28.457 376 207 12 43 375 28 384 6.58e-34 130
Msa0290040 AT2G22970.1 28.457 376 207 12 43 375 28 384 1.09e-33 130
Msa0290040 AT2G22970.3 28.457 376 207 12 43 375 28 384 1.27e-33 130
Msa0290040 AT2G22980.2 27.968 379 201 14 43 375 29 381 4.62e-33 128
Msa0290040 AT2G22980.4 27.968 379 201 14 43 375 29 381 5.24e-33 128
Msa0290040 AT2G22980.1 27.968 379 201 14 43 375 29 381 6.58e-33 128
Msa0290040 AT3G10450.4 28.682 387 212 14 34 375 21 388 1.26e-32 127
Msa0290040 AT3G10450.1 28.647 377 207 13 42 375 31 388 2.39e-32 127
Msa0290040 AT2G22990.5 28.065 367 213 13 43 375 26 375 4.75e-32 125
Msa0290040 AT3G12230.1 27.368 380 206 11 43 375 30 386 5.48e-32 125
Msa0290040 AT3G12220.2 28.184 369 197 12 51 375 12 356 7.94e-32 125
Msa0290040 AT3G10450.3 28.453 362 201 12 53 375 3 345 9.44e-32 124
Msa0290040 AT1G73280.1 26.895 409 227 12 10 375 13 392 1.19e-31 125
Msa0290040 AT1G73270.2 27.865 384 201 14 42 375 35 392 1.23e-31 125
Msa0290040 AT3G10450.2 28.691 359 198 12 56 375 6 345 1.34e-31 124
Msa0290040 AT3G12220.1 28.346 381 201 13 43 375 30 386 1.53e-31 124
Msa0290040 AT1G73270.1 27.865 384 201 14 42 375 35 392 1.56e-31 125
Msa0290040 AT2G23010.1 27.559 381 218 12 43 380 28 393 4.60e-31 123
Msa0290040 AT2G23010.2 27.559 381 218 12 43 380 28 393 4.74e-31 123
Msa0290040 AT1G73290.3 25.581 387 226 11 32 375 22 389 7.03e-31 122
Msa0290040 AT5G09640.1 27.612 402 226 13 42 384 29 424 7.48e-31 123
Msa0290040 AT3G12240.1 27.105 380 207 11 43 375 31 387 1.14e-30 122
Msa0290040 AT1G73290.1 25.581 387 226 11 32 375 22 389 1.50e-30 122
Msa0290040 AT1G73310.2 25.908 413 233 14 33 396 24 412 1.35e-29 119
Msa0290040 AT1G73310.1 26.531 392 216 13 33 375 24 392 3.27e-29 118
Msa0290040 AT3G12203.3 27.937 383 199 13 43 375 12 367 3.43e-29 117
Msa0290040 AT3G12203.1 27.937 383 199 13 43 375 33 388 4.03e-29 118
Msa0290040 AT1G73300.1 26.330 376 215 12 43 375 36 392 6.07e-29 117
Msa0290040 AT1G73300.2 26.330 376 215 12 43 375 36 392 6.07e-29 117
Msa0290040 AT2G22920.4 31.128 257 132 7 43 256 28 282 6.41e-29 115
Msa0290040 AT5G36180.1 26.247 381 211 13 42 375 35 392 6.83e-29 117
Msa0290040 AT3G12203.2 28.011 357 184 12 65 375 1 330 3.77e-28 114
Msa0290040 AT1G73290.2 29.719 249 133 6 32 240 22 268 5.19e-28 112
Msa0290040 AT1G73280.2 29.964 277 142 7 4 240 7 271 1.33e-27 112
Msa0290040 AT1G33540.1 26.234 385 219 12 48 376 41 416 2.20e-27 113
Msa0290040 AT2G22980.3 30.502 259 128 9 43 256 29 280 3.70e-27 111
Msa0290040 AT2G22970.2 30.350 257 133 8 43 256 28 281 5.59e-27 110
Msa0290040 AT1G33540.2 26.525 377 212 12 56 376 6 373 6.46e-27 111
Msa0290040 AT5G22980.1 27.778 342 194 12 46 351 94 418 7.41e-27 112
Msa0290040 AT3G10410.1 36.095 169 75 4 54 193 103 267 2.34e-25 108
Msa0290040 AT3G12220.3 31.982 222 110 6 43 225 30 249 2.03e-24 103
Msa0290040 AT3G45010.1 32.203 177 87 4 46 193 97 269 2.25e-23 102
Msa0290040 AT1G15000.1 32.796 186 86 5 62 214 47 226 4.27e-22 97.8
Msa0290040 AT2G22990.6 25.965 285 162 8 125 375 1 270 5.66e-19 87.4
Msa0290040 AT2G22990.2 25.965 285 162 8 125 375 1 270 5.83e-19 87.4
Msa0290040 AT1G73280.4 23.920 301 178 7 109 375 7 290 7.86e-17 81.3
Msa0290040 AT2G22980.5 25.000 288 155 10 125 375 1 264 1.36e-16 80.1
Msa0290040 AT1G73310.3 23.006 326 191 9 109 396 7 310 6.14e-16 78.6
Msa0290040 AT5G36180.2 23.279 305 175 9 109 375 7 290 3.50e-15 76.3
Msa0290040 AT5G36180.4 23.279 305 175 9 109 375 7 290 3.58e-15 76.6
Msa0290040 AT5G36180.5 23.279 305 175 9 109 375 7 290 3.61e-15 76.6
Msa0290040 AT5G36180.3 23.279 305 175 9 109 375 7 290 3.61e-15 76.6
Msa0290040 AT1G73280.3 25.820 244 159 6 137 375 39 265 4.81e-15 75.9
Msa0290040 AT5G22960.1 27.044 159 65 4 54 183 38 174 2.35e-12 65.9

Find 95 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGCTTAAGAGCATTTA+TGG 0.155510 2_3:+36645913 None:intergenic
TTCCTACCGGGCTGCGTATA+TGG 0.228575 2_3:-36646098 Msa0290040:CDS
TCACCTTGATTCCAAGAATA+TGG 0.233220 2_3:+36652192 None:intergenic
CAGATTCATGTAACAAAATC+TGG 0.238398 2_3:-36650114 Msa0290040:CDS
TATATTACCCATTTCTTCAT+AGG 0.262481 2_3:+36650084 None:intergenic
AATTTGAGACCACTCAAAAT+TGG 0.265712 2_3:+36652554 None:intergenic
GGTTGTTCTTCTATTGCTTT+TGG 0.274232 2_3:-36652276 Msa0290040:CDS
TCTATCTTAATCCATATTCT+TGG 0.277859 2_3:-36652203 Msa0290040:CDS
CTGCAGGTCTGCCATTTATC+AGG 0.281846 2_3:+36646491 None:intergenic
TCTTTATTTAAACAAGTCTT+TGG 0.302036 2_3:+36645360 None:intergenic
AAGAATATGGATTAAGATAG+AGG 0.318928 2_3:+36652205 None:intergenic
TCTTGCTCTTGTTGAACAAA+TGG 0.325060 2_3:+36652471 None:intergenic
GGAAATTGCCTATGAAGAAA+TGG 0.335599 2_3:-36650092 Msa0290040:CDS
TACCACTGGACCACATAAAC+TGG 0.338363 2_3:+36650203 None:intergenic
AGATGATTTCAGTGATCAAT+TGG 0.344814 2_3:-36650233 Msa0290040:CDS
GGCTGCGTATATGGATATTC+AGG 0.360987 2_3:-36646089 Msa0290040:intron
TTTGGTGAAGCTGAAGAAAT+TGG 0.362938 2_3:-36652258 Msa0290040:CDS
GAAAATCACATAGCAGATTC+AGG 0.369651 2_3:+36650155 None:intergenic
CAGATCATAAGCCTGATAAA+TGG 0.380720 2_3:-36646502 Msa0290040:CDS
GAATCTGATGGGTGTTCAAC+TGG 0.388550 2_3:+36650130 None:intergenic
ATTTATTGCAGTCATGTGAT+AGG 0.401746 2_3:-36646174 Msa0290040:intron
GTCATGTGATAGGTACTAAC+TGG 0.404895 2_3:-36646164 Msa0290040:CDS
GAATAGCGAGTAGATGTTAC+TGG 0.408934 2_3:+36645935 None:intergenic
AATTGTTGTTGCATAGGAAA+AGG 0.411387 2_3:+36652511 None:intergenic
AATCCATATTCTTGGAATCA+AGG 0.418089 2_3:-36652195 Msa0290040:intron
TTATGGCTTAATGGTGGTCC+TGG 0.419091 2_3:-36652297 Msa0290040:CDS
CTTGCTCTTGTTGAACAAAT+GGG 0.422874 2_3:+36652472 None:intergenic
TATATATTGAGCACTGATCT+AGG 0.424269 2_3:+36646132 None:intergenic
GATGATTTCAGTGATCAATT+GGG 0.430253 2_3:-36650232 Msa0290040:CDS
GTGGTCCAGTGGTATGATTT+CGG 0.431503 2_3:-36650194 Msa0290040:CDS
GGAGGGGTAAAGATACTGTA+TGG 0.435053 2_3:+36650058 None:intergenic
CATTTATCAGGCTTATGATC+TGG 0.443942 2_3:+36646503 None:intergenic
TTGTTCAACAAGAGCAAGAC+AGG 0.446307 2_3:-36652467 Msa0290040:CDS
TTTAAACAAGTCTTTGGTTG+AGG 0.449549 2_3:+36645366 None:intergenic
TGTAGAGCCCTTTGGACCTC+TGG 0.456216 2_3:+36646533 None:intergenic
GCATCAGAATTAATATGAAA+AGG 0.456247 2_3:+36652234 None:intergenic
GAAAAGGGTTGCCAATGTTA+TGG 0.456621 2_3:+36652527 None:intergenic
ATCAGTGGTGAGAGCTATGC+AGG 0.457396 2_3:-36650548 Msa0290040:intron
GAAATTGCCTATGAAGAAAT+GGG 0.466008 2_3:-36650091 Msa0290040:intron
AGTTGTACTTGGCAATAACT+TGG 0.469899 2_3:+36650422 None:intergenic
ATTGTTGTTGCATAGGAAAA+GGG 0.473876 2_3:+36652512 None:intergenic
TGGGGATGTTCCAGTTTATG+TGG 0.474009 2_3:-36650213 Msa0290040:CDS
GATCAACATGTAGAGCCCTT+TGG 0.479007 2_3:+36646525 None:intergenic
CTGATAAATGGCAGACCTGC+AGG 0.481227 2_3:-36646490 Msa0290040:intron
TATGAAAATCCAACTCCGAC+AGG 0.497419 2_3:+36651933 None:intergenic
TATCATTCGCATGGCAAGGA+GGG 0.505028 2_3:+36650041 None:intergenic
GGCGTGCATGGTATGACGAC+GGG 0.509207 2_3:-36645877 Msa0290040:CDS
TGTCTTTATTAGAAAAGAAG+TGG 0.511448 2_3:-36645407 Msa0290040:intron
TATCGTGAACTTATTCCTAC+CGG 0.514663 2_3:-36646111 Msa0290040:CDS
AAAAGAAGTGGCTTTGAAGT+AGG 0.515908 2_3:+36652318 None:intergenic
GCACGCCATGGGCTCACAGT+TGG 0.525204 2_3:+36645893 None:intergenic
TCGTCATACCATGCACGCCA+TGG 0.525297 2_3:+36645881 None:intergenic
CAAGATTCTATAAATCTCAA+AGG 0.526039 2_3:-36650388 Msa0290040:CDS
CAACAAGAGCAAGACAGGAT+TGG 0.532184 2_3:-36652462 Msa0290040:CDS
CTTTATGTTGACTCCCCTGT+CGG 0.536955 2_3:-36651948 Msa0290040:CDS
CTGTGAGCCCATGGCGTGCA+TGG 0.537478 2_3:-36645889 Msa0290040:CDS
ATGTGAAATTGTTGTTGCAT+AGG 0.542401 2_3:+36652505 None:intergenic
AAGATTCTATAAATCTCAAA+GGG 0.543820 2_3:-36650387 Msa0290040:CDS
TATAAATCTCAAAGGGTACA+TGG 0.549630 2_3:-36650380 Msa0290040:intron
AGCTTCCAACTGTGAGCCCA+TGG 0.552950 2_3:-36645898 Msa0290040:CDS
TTCCAGTTTATGTGGTCCAG+TGG 0.552998 2_3:-36650205 Msa0290040:CDS
AGATTCATGTAACAAAATCT+GGG 0.553769 2_3:-36650113 Msa0290040:CDS
GGAGTCAACATAAAGAATGT+TGG 0.555503 2_3:+36651956 None:intergenic
CGTCATACCATGCACGCCAT+GGG 0.555546 2_3:+36645882 None:intergenic
TGGTTATATAACAGTGAATG+AGG 0.560384 2_3:-36652391 Msa0290040:intron
CAATCGACCAGAGGTCCAAA+GGG 0.569543 2_3:-36646540 Msa0290040:CDS
TCAATCGACCAGAGGTCCAA+AGG 0.570553 2_3:-36646541 Msa0290040:CDS
CCATGCGAATGATAATCAGC+TGG 0.571298 2_3:-36650032 Msa0290040:CDS
CCAGCTGATTATCATTCGCA+TGG 0.574427 2_3:+36650032 None:intergenic
TGATTATCATTCGCATGGCA+AGG 0.582514 2_3:+36650037 None:intergenic
GCAATAACTTGGCTAAGTTG+CGG 0.588953 2_3:+36650433 None:intergenic
ATGATTTCAGTGATCAATTG+GGG 0.589122 2_3:-36650231 Msa0290040:CDS
TTGATCCGAAATCATACCAC+TGG 0.589667 2_3:+36650189 None:intergenic
AGAATATGGATTAAGATAGA+GGG 0.589906 2_3:+36652206 None:intergenic
ATCATTCGCATGGCAAGGAG+GGG 0.589954 2_3:+36650042 None:intergenic
ATAACAGTGAATGAGGATGC+TGG 0.592957 2_3:-36652384 Msa0290040:intron
ATGCTGTGTTTCTCTGTGCA+AGG 0.596215 2_3:+36646572 None:intergenic
ATGAAAATCCAACTCCGACA+GGG 0.598431 2_3:+36651934 None:intergenic
CCATTAAGCCATAAAAGAAG+TGG 0.599202 2_3:+36652306 None:intergenic
AGGATTGGCATAGCACTCCC+AGG 0.605982 2_3:-36652447 Msa0290040:CDS
AATAGCGAGTAGATGTTACT+GGG 0.612699 2_3:+36645936 None:intergenic
GAATATCCATATACGCAGCC+CGG 0.613450 2_3:+36646092 None:intergenic
ATCGTGAACTTATTCCTACC+GGG 0.615836 2_3:-36646110 Msa0290040:CDS
ATCCATATACGCAGCCCGGT+AGG 0.622115 2_3:+36646096 None:intergenic
AACACAGACTTCTTCATCAG+TGG 0.623979 2_3:-36650563 Msa0290040:CDS
TGTGATAGGTACTAACTGGA+AGG 0.629518 2_3:-36646160 Msa0290040:CDS
GAGGGGTAAAGATACTGTAT+GGG 0.629985 2_3:+36650059 None:intergenic
TGAAAATCCAACTCCGACAG+GGG 0.640137 2_3:+36651935 None:intergenic
CAGTGAATGAGGATGCTGGT+AGG 0.647420 2_3:-36652380 Msa0290040:CDS
AAAGCAATAGAAGAACAACC+AGG 0.674686 2_3:+36652279 None:intergenic
TGGCGTGCATGGTATGACGA+CGG 0.680862 2_3:-36645878 Msa0290040:CDS
TATATACTTCAATCGACCAG+AGG 0.704380 2_3:-36646549 Msa0290040:CDS
TTATCATTCGCATGGCAAGG+AGG 0.711217 2_3:+36650040 None:intergenic
TGCATGGTATGACGACGGGG+AGG 0.711688 2_3:-36645873 Msa0290040:intron
GCGTGCATGGTATGACGACG+GGG 0.718801 2_3:-36645876 Msa0290040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATAACATAAATACATTTT+TGG + chr2_3:36645786-36645805 None:intergenic 15.0%
!! TAAATTAGTGTATTTGTAAA+TGG + chr2_3:36646094-36646113 None:intergenic 15.0%
!! ATTTAAAGATGATTTGATAA+AGG + chr2_3:36646170-36646189 None:intergenic 15.0%
!!! TTTATTTTGTAAAATTGAGT+TGG - chr2_3:36646772-36646791 Msa0290040:intron 15.0%
!!! ATCTGAACATAAATTATTTT+AGG + chr2_3:36646948-36646967 None:intergenic 15.0%
!! CAATTAACATAAATGAAAAA+TGG + chr2_3:36647248-36647267 None:intergenic 15.0%
!! TAGATTAATTAATACTGAAA+TGG - chr2_3:36648242-36648261 Msa0290040:intron 15.0%
!!! CTATGATTGTATAAATATTT+TGG - chr2_3:36649793-36649812 Msa0290040:intron 15.0%
!! TAAGAAAATCATTAAATTGA+TGG - chr2_3:36649838-36649857 Msa0290040:intron 15.0%
!!! TTTGTTTTGATTGTATTATA+GGG - chr2_3:36650417-36650436 Msa0290040:CDS 15.0%
!! CAACTATATCATTTAATAAT+TGG - chr2_3:36651631-36651650 Msa0290040:intron 15.0%
!!! ACATAAATACATTTTTGGAA+AGG + chr2_3:36645781-36645800 None:intergenic 20.0%
!! ATAAGTTGTTTATCCAAATA+AGG + chr2_3:36646318-36646337 None:intergenic 20.0%
!! CTTTATAGCAAAAGTTAAAA+CGG - chr2_3:36646387-36646406 Msa0290040:intron 20.0%
!! TAACATAAATGAAAAATGGT+TGG + chr2_3:36647244-36647263 None:intergenic 20.0%
!! AAGATTCTATAAATCTCAAA+GGG - chr2_3:36647538-36647557 Msa0290040:intron 20.0%
!!! TTGTTTTATCTTGTCTTTAA+AGG - chr2_3:36647957-36647976 Msa0290040:intron 20.0%
!! GCATCTTAAATTAATTTAGA+AGG + chr2_3:36648116-36648135 None:intergenic 20.0%
!!! AATTTAAGTTTGTGAATGAT+TGG + chr2_3:36648314-36648333 None:intergenic 20.0%
!!! TTCAATTTGTTGATAAGTTT+TGG + chr2_3:36649219-36649238 None:intergenic 20.0%
!! TACAATTATGGTTCTTTATT+TGG - chr2_3:36649419-36649438 Msa0290040:intron 20.0%
!!! GTTTGTTTTGATTGTATTAT+AGG - chr2_3:36650416-36650435 Msa0290040:CDS 20.0%
!!! TTAGAAATGAACATTTTTAC+AGG - chr2_3:36650747-36650766 Msa0290040:intron 20.0%
!!! ATCAACCTAATTTAATTTAG+TGG - chr2_3:36650906-36650925 Msa0290040:intron 20.0%
!! CTTATCCACTAAATTAAATT+AGG + chr2_3:36650914-36650933 None:intergenic 20.0%
!!! ATTTCTATCATTATGGATTA+TGG + chr2_3:36651169-36651188 None:intergenic 20.0%
!!! TTCTTTACGAAAGTAATTTT+AGG - chr2_3:36651892-36651911 Msa0290040:intron 20.0%
!! NNNNNNNNNNCAAATTGCAG+CGG + chr2_3:36652363-36652382 None:intergenic 20.0%
!!! ATATGATACATTCAAGTTTA+TGG - chr2_3:36652473-36652492 Msa0290040:CDS 20.0%
!! CTAATAAAGACAAATACAAA+CGG + chr2_3:36652510-36652529 None:intergenic 20.0%
! GCATCAGAATTAATATGAAA+AGG + chr2_3:36645694-36645713 None:intergenic 25.0%
!! AGAATATGGATTAAGATAGA+GGG + chr2_3:36645722-36645741 None:intergenic 25.0%
!! AAGAATATGGATTAAGATAG+AGG + chr2_3:36645723-36645742 None:intergenic 25.0%
! TCTATCTTAATCCATATTCT+TGG - chr2_3:36645722-36645741 Msa0290040:intron 25.0%
! GAAACTATATCATTTGTGTT+TGG - chr2_3:36645932-36645951 Msa0290040:CDS 25.0%
! TTAGTGTATTTGTAAATGGA+TGG + chr2_3:36646090-36646109 None:intergenic 25.0%
! TTACATGCATTAAATGATCT+CGG - chr2_3:36646111-36646130 Msa0290040:CDS 25.0%
!!! ATAATTCAAATCCCACTTTT+TGG - chr2_3:36646227-36646246 Msa0290040:intron 25.0%
! CACAATAAACTTGATTACTT+AGG + chr2_3:36646718-36646737 None:intergenic 25.0%
!!! TTGAGTTGGATGTAAAATAA+TGG - chr2_3:36646786-36646805 Msa0290040:intron 25.0%
!! TGAGTTGGATGTAAAATAAT+GGG - chr2_3:36646787-36646806 Msa0290040:intron 25.0%
! AATTGCTAATGACTGTAATT+GGG + chr2_3:36646924-36646943 None:intergenic 25.0%
! AAATTGCTAATGACTGTAAT+TGG + chr2_3:36646925-36646944 None:intergenic 25.0%
!!! GTTTCAAGTTAAAACCATTA+TGG - chr2_3:36647044-36647063 Msa0290040:intron 25.0%
!!! AATTGATTTTTCCTCCATAA+TGG + chr2_3:36647061-36647080 None:intergenic 25.0%
!! ATCTCATATTTCTATTGAAG+TGG - chr2_3:36647315-36647334 Msa0290040:intron 25.0%
!! TTTTGTATCTAAGTTGTACT+TGG + chr2_3:36647517-36647536 None:intergenic 25.0%
! CAAGATTCTATAAATCTCAA+AGG - chr2_3:36647537-36647556 Msa0290040:intron 25.0%
!! TACAAGTTTTTGTGCAAAAA+TGG + chr2_3:36647579-36647598 None:intergenic 25.0%
! GATCTAACTGTTCAAAAAAA+TGG + chr2_3:36647608-36647627 None:intergenic 25.0%
! GATTCAGTTAATAATGTGAA+AGG + chr2_3:36647630-36647649 None:intergenic 25.0%
!! TTTTGTTACATGAATCTGAT+GGG + chr2_3:36647809-36647828 None:intergenic 25.0%
!! ATTTTGTTACATGAATCTGA+TGG + chr2_3:36647810-36647829 None:intergenic 25.0%
! AGATTCATGTAACAAAATCT+GGG - chr2_3:36647812-36647831 Msa0290040:intron 25.0%
! TATATTACCCATTTCTTCAT+AGG + chr2_3:36647844-36647863 None:intergenic 25.0%
!! TTTAAAGGTTCTAATATCGT+TGG - chr2_3:36647972-36647991 Msa0290040:intron 25.0%
! AAAACGGCGAAAAAAATATA+AGG + chr2_3:36648414-36648433 None:intergenic 25.0%
! AGCAACACATTATAAACATA+AGG - chr2_3:36648563-36648582 Msa0290040:intron 25.0%
! GCAACACATTATAAACATAA+GGG - chr2_3:36648564-36648583 Msa0290040:intron 25.0%
!! ATGTGTTGAAAATTAGTTTG+AGG + chr2_3:36648704-36648723 None:intergenic 25.0%
!! AGATTTTGTAAAACAGCAAA+AGG + chr2_3:36648789-36648808 None:intergenic 25.0%
! ATATGAAAGGTTGAATTGAA+TGG + chr2_3:36648910-36648929 None:intergenic 25.0%
!!! TACATTTTGAAGCATATGAA+AGG + chr2_3:36648923-36648942 None:intergenic 25.0%
!! TAAAGATGAATTTTGTCACA+TGG - chr2_3:36648976-36648995 Msa0290040:intron 25.0%
! GTTTAATTGAAGTTCTATCA+AGG + chr2_3:36649113-36649132 None:intergenic 25.0%
! AATCTGAATCTGTACAATTA+TGG - chr2_3:36649407-36649426 Msa0290040:intron 25.0%
! ACCTTTGGATATATTTAGTT+TGG - chr2_3:36649475-36649494 Msa0290040:intron 25.0%
!! CCTTTGGATATATTTAGTTT+GGG - chr2_3:36649476-36649495 Msa0290040:intron 25.0%
! AGTGATATAATATTTACTGC+CGG + chr2_3:36649546-36649565 None:intergenic 25.0%
!!! AACAGTTTTAAGATTCAACA+AGG - chr2_3:36649605-36649624 Msa0290040:intron 25.0%
!!! GTATTTCTGTTTTTAGAGTT+CGG - chr2_3:36649727-36649746 Msa0290040:intron 25.0%
!!! TGATGGATTCACTATTTAAT+TGG - chr2_3:36649855-36649874 Msa0290040:intron 25.0%
!!! ATGGGGTTTTATCAAATATT+CGG + chr2_3:36649940-36649959 None:intergenic 25.0%
! TTGCAGAACCAAAAATTATA+GGG + chr2_3:36650025-36650044 None:intergenic 25.0%
! ATTGCAGAACCAAAAATTAT+AGG + chr2_3:36650026-36650045 None:intergenic 25.0%
! CTATGGTAACTAAATTAGAA+AGG - chr2_3:36650152-36650171 Msa0290040:CDS 25.0%
!! GAGATTTTATTCTTCTTCAT+TGG + chr2_3:36650505-36650524 None:intergenic 25.0%
! AGAGAAAATGAACTAATGAA+GGG + chr2_3:36650550-36650569 None:intergenic 25.0%
! AAGAGAAAATGAACTAATGA+AGG + chr2_3:36650551-36650570 None:intergenic 25.0%
!! TGGTTACTCATTTTCATAAA+GGG + chr2_3:36650997-36651016 None:intergenic 25.0%
!! TTGGTTACTCATTTTCATAA+AGG + chr2_3:36650998-36651017 None:intergenic 25.0%
! GTGTAGAATTTCTATCATTA+TGG + chr2_3:36651176-36651195 None:intergenic 25.0%
! AATCCTTATTCATATCACAA+AGG - chr2_3:36651287-36651306 Msa0290040:intron 25.0%
! ATACCTTTGTGATATGAATA+AGG + chr2_3:36651293-36651312 None:intergenic 25.0%
!! GGTATATGATAACAGATTTT+TGG - chr2_3:36651308-36651327 Msa0290040:intron 25.0%
! CTGCAATAAATGATAATAAC+TGG + chr2_3:36651742-36651761 None:intergenic 25.0%
! ATCTAAACGAAGAAAATAGA+TGG + chr2_3:36652102-36652121 None:intergenic 25.0%
! TGTCTTTATTAGAAAAGAAG+TGG - chr2_3:36652518-36652537 Msa0290040:CDS 25.0%
! AATTTGAGACCACTCAAAAT+TGG + chr2_3:36645374-36645393 None:intergenic 30.0%
!! TTTTGAGTGGTCTCAAATTT+TGG - chr2_3:36645375-36645394 Msa0290040:CDS 30.0%
!! TCAAATTTTGGCCATAACAT+TGG - chr2_3:36645387-36645406 Msa0290040:CDS 30.0%
! ATTGTTGTTGCATAGGAAAA+GGG + chr2_3:36645416-36645435 None:intergenic 30.0%
! AATTGTTGTTGCATAGGAAA+AGG + chr2_3:36645417-36645436 None:intergenic 30.0%
! ATGTGAAATTGTTGTTGCAT+AGG + chr2_3:36645423-36645442 None:intergenic 30.0%
!! TGATATTGAAGTTTTGACCT+GGG + chr2_3:36645498-36645517 None:intergenic 30.0%
!!! ATCAGTTTTGAACACTATTC+TGG - chr2_3:36645514-36645533 Msa0290040:intron 30.0%
TGGTTATATAACAGTGAATG+AGG - chr2_3:36645534-36645553 Msa0290040:intron 30.0%
AATCCATATTCTTGGAATCA+AGG - chr2_3:36645730-36645749 Msa0290040:intron 30.0%
!! TTCATGTGTTTGTTTTCGAT+TGG - chr2_3:36645825-36645844 Msa0290040:intron 30.0%
!! TCATGTGTTTGTTTTCGATT+GGG - chr2_3:36645826-36645845 Msa0290040:intron 30.0%
AGATTTGTCCCAGTATTAAT+CGG - chr2_3:36645867-36645886 Msa0290040:intron 30.0%
AAGTGAAATTTACAAGCCAA+AGG - chr2_3:36646281-36646300 Msa0290040:intron 30.0%
! CCAATAGACTAGTTCATTAA+GGG + chr2_3:36646592-36646611 None:intergenic 30.0%
! CCTTAATGAACTAGTCTATT+GGG - chr2_3:36646590-36646609 Msa0290040:CDS 30.0%
AGCTTATGCTCATTATATAG+AGG - chr2_3:36646629-36646648 Msa0290040:intron 30.0%
GCTTATGCTCATTATATAGA+GGG - chr2_3:36646630-36646649 Msa0290040:intron 30.0%
! CAATTAGCAAAGTATCATGA+CGG - chr2_3:36646683-36646702 Msa0290040:intron 30.0%
TTCTTTAACTAGTGCTCTTA+TGG + chr2_3:36646827-36646846 None:intergenic 30.0%
AGCCATAAAATCACGTTTAT+AGG - chr2_3:36647003-36647022 Msa0290040:intron 30.0%
! TGCCTATAAACGTGATTTTA+TGG + chr2_3:36647008-36647027 None:intergenic 30.0%
TCAAGTTAAAACCATTATGG+AGG - chr2_3:36647047-36647066 Msa0290040:intron 30.0%
!! AAGTCTGTGTTTTTATACTG+GGG + chr2_3:36647353-36647372 None:intergenic 30.0%
!! GAAGTCTGTGTTTTTATACT+GGG + chr2_3:36647354-36647373 None:intergenic 30.0%
!! AGAAGTCTGTGTTTTTATAC+TGG + chr2_3:36647355-36647374 None:intergenic 30.0%
CACAAATGGTGAGATAAATA+AGG - chr2_3:36647404-36647423 Msa0290040:intron 30.0%
!!! ATTCTAGTTTTCCTTGTTTC+AGG - chr2_3:36647459-36647478 Msa0290040:intron 30.0%
! TATAAATCTCAAAGGGTACA+TGG - chr2_3:36647545-36647564 Msa0290040:intron 30.0%
AGATGATTTCAGTGATCAAT+TGG - chr2_3:36647692-36647711 Msa0290040:intron 30.0%
GATGATTTCAGTGATCAATT+GGG - chr2_3:36647693-36647712 Msa0290040:intron 30.0%
ATGATTTCAGTGATCAATTG+GGG - chr2_3:36647694-36647713 Msa0290040:intron 30.0%
CAGATTCATGTAACAAAATC+TGG - chr2_3:36647811-36647830 Msa0290040:intron 30.0%
GAAATTGCCTATGAAGAAAT+GGG - chr2_3:36647834-36647853 Msa0290040:intron 30.0%
AATGATTCTGTCCAGATAAA+TGG - chr2_3:36648084-36648103 Msa0290040:intron 30.0%
TAAATTTCACTCTAAGCTCT+TGG - chr2_3:36648328-36648347 Msa0290040:intron 30.0%
GGCGAAAAAAATATAAGGAT+TGG + chr2_3:36648409-36648428 None:intergenic 30.0%
ACAGTTGGATATTATCTTTG+AGG - chr2_3:36648444-36648463 Msa0290040:intron 30.0%
CAGTTGGATATTATCTTTGA+GGG - chr2_3:36648445-36648464 Msa0290040:intron 30.0%
TCTCTAGTAACACCAATTAA+TGG - chr2_3:36648487-36648506 Msa0290040:intron 30.0%
! CACTATGATTTGCCATTAAT+TGG + chr2_3:36648502-36648521 None:intergenic 30.0%
! CTAATTTTCAACACATGTGA+TGG - chr2_3:36648708-36648727 Msa0290040:intron 30.0%
AATCTGTTAATAAGCACAAG+AGG + chr2_3:36649039-36649058 None:intergenic 30.0%
ATAAAAGATAGAGTCAGAAG+AGG + chr2_3:36649307-36649326 None:intergenic 30.0%
! TTGTACAGATTCAGATTTTC+AGG + chr2_3:36649404-36649423 None:intergenic 30.0%
TTAATCATCCATATGAGTCT+TGG - chr2_3:36649445-36649464 Msa0290040:intron 30.0%
CCCAAACTAAATATATCCAA+AGG + chr2_3:36649479-36649498 None:intergenic 30.0%
GGAAATTACAATTTGAATCC+TGG - chr2_3:36649512-36649531 Msa0290040:intron 30.0%
!!! CAAAAAAAAGTCATCGGTTT+TGG + chr2_3:36649657-36649676 None:intergenic 30.0%
AGTGCTCAAAAAAAAGTCAT+CGG + chr2_3:36649663-36649682 None:intergenic 30.0%
!!! TGTTTTTAGAGTTCGGAATT+CGG - chr2_3:36649734-36649753 Msa0290040:intron 30.0%
! TTACACAGAAAGAGTATGAT+GGG + chr2_3:36649958-36649977 None:intergenic 30.0%
ATCATACTCTTTCTGTGTAA+CGG - chr2_3:36649958-36649977 Msa0290040:intron 30.0%
TGCAGAACCAAAAATTATAG+GGG + chr2_3:36650024-36650043 None:intergenic 30.0%
TGGTAACTAAATTAGAAAGG+AGG - chr2_3:36650155-36650174 Msa0290040:CDS 30.0%
TAAATTAGAAAGGAGGAATC+TGG - chr2_3:36650162-36650181 Msa0290040:CDS 30.0%
!! ATCTGGATTAGTATTACTTG+TGG - chr2_3:36650179-36650198 Msa0290040:CDS 30.0%
AGTATAGTAATATTCAGGAG+AGG - chr2_3:36650203-36650222 Msa0290040:CDS 30.0%
GTATAGTAATATTCAGGAGA+GGG - chr2_3:36650204-36650223 Msa0290040:CDS 30.0%
AATCAATTCGTGCAGTAATA+GGG - chr2_3:36650275-36650294 Msa0290040:intron 30.0%
TGAGAAAAATGGAAAGATAG+AGG - chr2_3:36650325-36650344 Msa0290040:intron 30.0%
TAAAAAAATGCAATGGGGAA+GGG + chr2_3:36650456-36650475 None:intergenic 30.0%
GAAGAATAAAATCTCATGCA+AGG - chr2_3:36650510-36650529 Msa0290040:intron 30.0%
AATAAAATCTCATGCAAGGT+TGG - chr2_3:36650514-36650533 Msa0290040:intron 30.0%
ATAAAATCTCATGCAAGGTT+GGG - chr2_3:36650515-36650534 Msa0290040:intron 30.0%
!! TTGGTGTTATTCAAACTATC+AGG + chr2_3:36650644-36650663 None:intergenic 30.0%
! TGAACATTTTTACAGGTCAA+AGG - chr2_3:36650754-36650773 Msa0290040:intron 30.0%
! GAACATTTTTACAGGTCAAA+GGG - chr2_3:36650755-36650774 Msa0290040:intron 30.0%
TGAAAATGAGTAACCAAGAA+AGG - chr2_3:36651001-36651020 Msa0290040:intron 30.0%
! GTAACCAAGAAAGGTATATT+CGG - chr2_3:36651010-36651029 Msa0290040:intron 30.0%
TGTGATAATTGAGGTTGTTT+CGG + chr2_3:36651140-36651159 None:intergenic 30.0%
! TGGATGTTTTGTGATAATTG+AGG + chr2_3:36651149-36651168 None:intergenic 30.0%
!!! GTACTGACTTCAAGAATTTT+AGG - chr2_3:36651653-36651672 Msa0290040:intron 30.0%
ATTTATTGCAGTCATGTGAT+AGG - chr2_3:36651751-36651770 Msa0290040:intron 30.0%
!! TATATATTGAGCACTGATCT+AGG + chr2_3:36651796-36651815 None:intergenic 30.0%
! AAAGTAATTTTAGGCGTCAA+AGG - chr2_3:36651901-36651920 Msa0290040:intron 30.0%
! AAGTAATTTTAGGCGTCAAA+GGG - chr2_3:36651902-36651921 Msa0290040:intron 30.0%
GACATATAAGTGAAACAAAC+AGG - chr2_3:36652181-36652200 Msa0290040:intron 30.0%
TATAAGTGAAACAAACAGGT+AGG - chr2_3:36652185-36652204 Msa0290040:intron 30.0%
! ACTCACATTTGTTAACGTAA+GGG - chr2_3:36652232-36652251 Msa0290040:CDS 30.0%
! ATCAATGTTAGAGCAAGTTT+TGG + chr2_3:36652287-36652306 None:intergenic 30.0%
CTTGCTCTTGTTGAACAAAT+GGG + chr2_3:36645456-36645475 None:intergenic 35.0%
TCTTGCTCTTGTTGAACAAA+TGG + chr2_3:36645457-36645476 None:intergenic 35.0%
!! CTGATATTGAAGTTTTGACC+TGG + chr2_3:36645499-36645518 None:intergenic 35.0%
!! AAAAGAAGTGGCTTTGAAGT+AGG + chr2_3:36645610-36645629 None:intergenic 35.0%
! CTTCAAAGCCACTTCTTTTA+TGG - chr2_3:36645611-36645630 Msa0290040:intron 35.0%
CCATTAAGCCATAAAAGAAG+TGG + chr2_3:36645622-36645641 None:intergenic 35.0%
! CCACTTCTTTTATGGCTTAA+TGG - chr2_3:36645619-36645638 Msa0290040:intron 35.0%
! CTTCTTTTATGGCTTAATGG+TGG - chr2_3:36645622-36645641 Msa0290040:intron 35.0%
AAAGCAATAGAAGAACAACC+AGG + chr2_3:36645649-36645668 None:intergenic 35.0%
! GGTTGTTCTTCTATTGCTTT+TGG - chr2_3:36645649-36645668 Msa0290040:intron 35.0%
TTTGGTGAAGCTGAAGAAAT+TGG - chr2_3:36645667-36645686 Msa0290040:intron 35.0%
TCACCTTGATTCCAAGAATA+TGG + chr2_3:36645736-36645755 None:intergenic 35.0%
TCCCAGTATTAATCGGTTAT+TGG - chr2_3:36645874-36645893 Msa0290040:CDS 35.0%
CCCAATAACCGATTAATACT+GGG + chr2_3:36645878-36645897 None:intergenic 35.0%
CCCAGTATTAATCGGTTATT+GGG - chr2_3:36645875-36645894 Msa0290040:CDS 35.0%
ACCCAATAACCGATTAATAC+TGG + chr2_3:36645879-36645898 None:intergenic 35.0%
GTATTAATCGGTTATTGGGT+CGG - chr2_3:36645879-36645898 Msa0290040:CDS 35.0%
GGAGTCAACATAAAGAATGT+TGG + chr2_3:36645972-36645991 None:intergenic 35.0%
TGAAACACAGACCAAAAAGT+GGG + chr2_3:36646241-36646260 None:intergenic 35.0%
TCTAGTGATATGAGTTGTTG+TGG + chr2_3:36646541-36646560 None:intergenic 35.0%
! CCCTTAATGAACTAGTCTAT+TGG - chr2_3:36646589-36646608 Msa0290040:CDS 35.0%
! CCCAATAGACTAGTTCATTA+AGG + chr2_3:36646593-36646612 None:intergenic 35.0%
TATAATGAGCATAAGCTCAG+AGG + chr2_3:36646626-36646645 None:intergenic 35.0%
AATGACTGTAATTGGGCATT+GGG + chr2_3:36646917-36646936 None:intergenic 35.0%
TAATGACTGTAATTGGGCAT+TGG + chr2_3:36646918-36646937 None:intergenic 35.0%
CGTTTATAGGCAAAAGCTTA+AGG - chr2_3:36647016-36647035 Msa0290040:intron 35.0%
TATTTAGAGGTTCTCCCTAA+TGG - chr2_3:36647170-36647189 Msa0290040:intron 35.0%
CCAAAACAACTAGTCCATTA+GGG + chr2_3:36647187-36647206 None:intergenic 35.0%
TCCAAAACAACTAGTCCATT+AGG + chr2_3:36647188-36647207 None:intergenic 35.0%
! TTTTGGATGAGTTCTCCTTT+AGG - chr2_3:36647201-36647220 Msa0290040:intron 35.0%
TTTGGATGAGTTCTCCTTTA+GGG - chr2_3:36647202-36647221 Msa0290040:intron 35.0%
!! TGGTTGGTAAAGTGTTATGA+GGG + chr2_3:36647228-36647247 None:intergenic 35.0%
!! ATGGTTGGTAAAGTGTTATG+AGG + chr2_3:36647229-36647248 None:intergenic 35.0%
TAATTCATTATGTGCAGCTG+AGG - chr2_3:36647289-36647308 Msa0290040:intron 35.0%
GAACATAATGTCCTGAAACA+AGG + chr2_3:36647473-36647492 None:intergenic 35.0%
AGTTGTACTTGGCAATAACT+TGG + chr2_3:36647506-36647525 None:intergenic 35.0%
GAAAATCACATAGCAGATTC+AGG + chr2_3:36647773-36647792 None:intergenic 35.0%
GGAAATTGCCTATGAAGAAA+TGG - chr2_3:36647833-36647852 Msa0290040:intron 35.0%
! GATGATTTTCCTGTTTGTGA+TGG - chr2_3:36648000-36648019 Msa0290040:intron 35.0%
! ACTTTTGTTAGTAAGCGACT+AGG - chr2_3:36648165-36648184 Msa0290040:intron 35.0%
AACTGTTGTGATGCTGAAAA+CGG + chr2_3:36648430-36648449 None:intergenic 35.0%
ATCATAGTGATTAGACGTTG+AGG - chr2_3:36648513-36648532 Msa0290040:intron 35.0%
TGGCTATTCCAAAACTATCT+TGG - chr2_3:36648634-36648653 Msa0290040:intron 35.0%
!! AACACATGTGATGGATCTTT+AGG - chr2_3:36648717-36648736 Msa0290040:intron 35.0%
!!! GATAAGTTTTGGACCAATGT+AGG + chr2_3:36649208-36649227 None:intergenic 35.0%
!!! GGAGACTTTTCTTGTTATTG+AGG - chr2_3:36649272-36649291 Msa0290040:intron 35.0%
TTTACTAGCCAAGACTCATA+TGG + chr2_3:36649456-36649475 None:intergenic 35.0%
!! GGATATATTTAGTTTGGGAC+AGG - chr2_3:36649481-36649500 Msa0290040:intron 35.0%
!! TATATTTAGTTTGGGACAGG+AGG - chr2_3:36649484-36649503 Msa0290040:intron 35.0%
CGACTTAGATCAATGTGTAA+AGG - chr2_3:36649574-36649593 Msa0290040:intron 35.0%
AGCACTTCATATCATGTTCT+AGG - chr2_3:36649677-36649696 Msa0290040:intron 35.0%
TAACCACATATAGCAAAGGT+AGG + chr2_3:36649706-36649725 None:intergenic 35.0%
TACGTAACCACATATAGCAA+AGG + chr2_3:36649710-36649729 None:intergenic 35.0%
CATTAGTTGTTAAGCCTGTA+AGG + chr2_3:36649908-36649927 None:intergenic 35.0%
! TACACAGAAAGAGTATGATG+GGG + chr2_3:36649957-36649976 None:intergenic 35.0%
! GTTACACAGAAAGAGTATGA+TGG + chr2_3:36649959-36649978 None:intergenic 35.0%
! AAGTGGACCCCTATAATTTT+TGG - chr2_3:36650014-36650033 Msa0290040:intron 35.0%
! ATAAGTGTACGATGCAGTTT+TGG - chr2_3:36650053-36650072 Msa0290040:CDS 35.0%
! TAAGTGTACGATGCAGTTTT+GGG - chr2_3:36650054-36650073 Msa0290040:CDS 35.0%
TTTGGGCATGGAAATATGTT+AGG - chr2_3:36650071-36650090 Msa0290040:intron 35.0%
TTGGGCATGGAAATATGTTA+GGG - chr2_3:36650072-36650091 Msa0290040:intron 35.0%
GTGGCAGTATAGTAATATTC+AGG - chr2_3:36650198-36650217 Msa0290040:CDS 35.0%
AAAAGGATGTTTGAGCATCA+TGG - chr2_3:36650229-36650248 Msa0290040:CDS 35.0%
GAATCAATTCGTGCAGTAAT+AGG - chr2_3:36650274-36650293 Msa0290040:intron 35.0%
ATCAATTCGTGCAGTAATAG+GGG - chr2_3:36650276-36650295 Msa0290040:intron 35.0%
TTTGGAGGGAATGAGAAAAA+TGG - chr2_3:36650314-36650333 Msa0290040:intron 35.0%
CTAAAAAAATGCAATGGGGA+AGG + chr2_3:36650457-36650476 None:intergenic 35.0%
GGAGCTAAAAAAATGCAATG+GGG + chr2_3:36650461-36650480 None:intergenic 35.0%
GGGAGCTAAAAAAATGCAAT+GGG + chr2_3:36650462-36650481 None:intergenic 35.0%
!!! TTTTTTTAGCTCCCCCATAT+TGG - chr2_3:36650468-36650487 Msa0290040:intron 35.0%
!!! AGAGTTTTGAGGATAAAGGA+CGG + chr2_3:36650578-36650597 None:intergenic 35.0%
GTGGAGATTCACTAGAAAAA+GGG - chr2_3:36650697-36650716 Msa0290040:intron 35.0%
! GGGAATTTAGTTTCGTGAAA+CGG - chr2_3:36650717-36650736 Msa0290040:intron 35.0%
! GGAATTTAGTTTCGTGAAAC+GGG - chr2_3:36650718-36650737 Msa0290040:intron 35.0%
AGTTGTTTGCCGATATAACA+TGG - chr2_3:36650834-36650853 Msa0290040:intron 35.0%
ACACTGCAACCATGTTATAT+CGG + chr2_3:36650846-36650865 None:intergenic 35.0%
GAGCGATATTGAGATAAAAG+AGG - chr2_3:36650944-36650963 Msa0290040:intron 35.0%
! ATTTTCATAAAGGGTGAACC+CGG + chr2_3:36650988-36651007 None:intergenic 35.0%
ACTACCGAATATACCTTTCT+TGG + chr2_3:36651017-36651036 None:intergenic 35.0%
AATTCCAACTACAGATACTG+AGG - chr2_3:36651207-36651226 Msa0290040:intron 35.0%
TATATACTTCAATCGACCAG+AGG - chr2_3:36651376-36651395 Msa0290040:intron 35.0%
CATTTATCAGGCTTATGATC+TGG + chr2_3:36651425-36651444 None:intergenic 35.0%
CAGATCATAAGCCTGATAAA+TGG - chr2_3:36651423-36651442 Msa0290040:intron 35.0%
GACGAACTGAAATGTAGAAA+AGG - chr2_3:36651523-36651542 Msa0290040:intron 35.0%
TATCGTGAACTTATTCCTAC+CGG - chr2_3:36651814-36651833 Msa0290040:intron 35.0%
TCCTCAATTCATCTATGTCA+TGG - chr2_3:36651942-36651961 Msa0290040:intron 35.0%
AATAGCGAGTAGATGTTACT+GGG + chr2_3:36651992-36652011 None:intergenic 35.0%
!! TGGAAGCTTAAGAGCATTTA+TGG + chr2_3:36652015-36652034 None:intergenic 35.0%
ATGTCAATGTCAATGCAATG+AGG + chr2_3:36652166-36652185 None:intergenic 35.0%
! GACTCACATTTGTTAACGTA+AGG - chr2_3:36652231-36652250 Msa0290040:CDS 35.0%
! CTCACATTTGTTAACGTAAG+GGG - chr2_3:36652233-36652252 Msa0290040:CDS 35.0%
TTGATCAAAGCCTTCTTAGA+AGG - chr2_3:36652302-36652321 Msa0290040:CDS 35.0%
GAAAAGGGTTGCCAATGTTA+TGG + chr2_3:36645401-36645420 None:intergenic 40.0%
TTGTTCAACAAGAGCAAGAC+AGG - chr2_3:36645458-36645477 Msa0290040:intron 40.0%
ATAACAGTGAATGAGGATGC+TGG - chr2_3:36645541-36645560 Msa0290040:intron 40.0%
!!! CTGGTAGGAACTTGTTTTAC+TGG - chr2_3:36645560-36645579 Msa0290040:intron 40.0%
AAATCTCATTGTCCACTCGT+GGG + chr2_3:36645853-36645872 None:intergenic 40.0%
ATGAAAATCCAACTCCGACA+GGG + chr2_3:36645994-36646013 None:intergenic 40.0%
TATGAAAATCCAACTCCGAC+AGG + chr2_3:36645995-36646014 None:intergenic 40.0%
!!! CTCGGCTATTGTTTTGAGAT+CGG - chr2_3:36646129-36646148 Msa0290040:CDS 40.0%
GTGAAACACAGACCAAAAAG+TGG + chr2_3:36646242-36646261 None:intergenic 40.0%
TTTGGTCTGTGTTTCACTCT+TGG - chr2_3:36646245-36646264 Msa0290040:intron 40.0%
TAAGGCATGTGAAAGTCCTT+TGG + chr2_3:36646300-36646319 None:intergenic 40.0%
! GGACTTTCACATGCCTTATT+TGG - chr2_3:36646302-36646321 Msa0290040:intron 40.0%
! TTAGCAAAGTATCATGACGG+CGG - chr2_3:36646686-36646705 Msa0290040:intron 40.0%
!!! CCCTAATGGACTAGTTGTTT+TGG - chr2_3:36647184-36647203 Msa0290040:intron 40.0%
AACACAGACTTCTTCATCAG+TGG - chr2_3:36647362-36647381 Msa0290040:intron 40.0%
GCTATGCAGGTAAACACAAA+TGG - chr2_3:36647390-36647409 Msa0290040:intron 40.0%
GCAATAACTTGGCTAAGTTG+CGG + chr2_3:36647495-36647514 None:intergenic 40.0%
AATATACACTTGTCTGCTGC+AGG - chr2_3:36647653-36647672 Msa0290040:intron 40.0%
TTGATCCGAAATCATACCAC+TGG + chr2_3:36647739-36647758 None:intergenic 40.0%
GAGGGGTAAAGATACTGTAT+GGG + chr2_3:36647869-36647888 None:intergenic 40.0%
TGATTATCATTCGCATGGCA+AGG + chr2_3:36647891-36647910 None:intergenic 40.0%
ATGCAGAATGATAGAGTGCA+TGG - chr2_3:36648132-36648151 Msa0290040:intron 40.0%
TGCAGAATGATAGAGTGCAT+GGG - chr2_3:36648133-36648152 Msa0290040:intron 40.0%
!! GGACTTCTCTGAAATCTTCA+TGG - chr2_3:36648349-36648368 Msa0290040:intron 40.0%
!! AGTTTCTAAAGCTATCGCGA+TGG - chr2_3:36648380-36648399 Msa0290040:intron 40.0%
! GTTTTCAGCATCACAACAGT+TGG - chr2_3:36648429-36648448 Msa0290040:intron 40.0%
! AGAGGTGTGAGTTAGATTCA+GGG + chr2_3:36648607-36648626 None:intergenic 40.0%
! AAGAGGTGTGAGTTAGATTC+AGG + chr2_3:36648608-36648627 None:intergenic 40.0%
! CTCATGTGCCAAGATAGTTT+TGG + chr2_3:36648645-36648664 None:intergenic 40.0%
AGTGAGTGGAATTACAGTGT+CGG + chr2_3:36648852-36648871 None:intergenic 40.0%
! TGTTTTCCCTGTGGCATAAT+CGG - chr2_3:36648879-36648898 Msa0290040:intron 40.0%
! GAATTTTGTCACATGGTCTC+TGG - chr2_3:36648983-36649002 Msa0290040:intron 40.0%
!! TCAGTACAAATGGTAGTGGA+AGG + chr2_3:36649015-36649034 None:intergenic 40.0%
AGGTTCAGTACAAATGGTAG+TGG + chr2_3:36649019-36649038 None:intergenic 40.0%
CACAAGAGGTTCAGTACAAA+TGG + chr2_3:36649025-36649044 None:intergenic 40.0%
! TCTGAAACAGCTAGTTGAGT+TGG - chr2_3:36649251-36649270 Msa0290040:intron 40.0%
!! AGATTCAGATTTTCAGGCAG+AGG + chr2_3:36649398-36649417 None:intergenic 40.0%
AGTCTTGGCTAGTAAACCTT+TGG - chr2_3:36649460-36649479 Msa0290040:intron 40.0%
! CTTCCTACCTTTGCTATATG+TGG - chr2_3:36649700-36649719 Msa0290040:intron 40.0%
TCCTAACACAATTCCTGACT+TGG - chr2_3:36650105-36650124 Msa0290040:CDS 40.0%
TCCAAGTCAGGAATTGTGTT+AGG + chr2_3:36650109-36650128 None:intergenic 40.0%
ATATTCAGGAGAGGGAGAAA+AGG - chr2_3:36650212-36650231 Msa0290040:CDS 40.0%
TGCAGTAATAGGGGAAGAAA+GGG - chr2_3:36650285-36650304 Msa0290040:intron 40.0%
GGGGAGCTAAAAAAATGCAA+TGG + chr2_3:36650463-36650482 None:intergenic 40.0%
ACTAAAACCCTCCAATATGG+GGG + chr2_3:36650482-36650501 None:intergenic 40.0%
GACTAAAACCCTCCAATATG+GGG + chr2_3:36650483-36650502 None:intergenic 40.0%
GGACTAAAACCCTCCAATAT+GGG + chr2_3:36650484-36650503 None:intergenic 40.0%
TGGACTAAAACCCTCCAATA+TGG + chr2_3:36650485-36650504 None:intergenic 40.0%
!!! AGGGAGAGTTTTGAGGATAA+AGG + chr2_3:36650582-36650601 None:intergenic 40.0%
TTTGGGAGTTTGGATGGAAA+GGG + chr2_3:36650605-36650624 None:intergenic 40.0%
CAAACTATCAGGTCCATCTT+GGG + chr2_3:36650633-36650652 None:intergenic 40.0%
TCAAACTATCAGGTCCATCT+TGG + chr2_3:36650634-36650653 None:intergenic 40.0%
ACCAAATGAGAGAACTCTGA+AGG - chr2_3:36650659-36650678 Msa0290040:intron 40.0%
ACCTTCAGAGTTCTCTCATT+TGG + chr2_3:36650663-36650682 None:intergenic 40.0%
GGTGGAGATTCACTAGAAAA+AGG - chr2_3:36650696-36650715 Msa0290040:intron 40.0%
TCGGCAAACAACTGAAATGT+TGG + chr2_3:36650827-36650846 None:intergenic 40.0%
AAAGAGGATTGAGACTTGAG+AGG - chr2_3:36650960-36650979 Msa0290040:intron 40.0%
! TTGAGGTTGTTTCGGACAAT+AGG + chr2_3:36651132-36651151 None:intergenic 40.0%
TATGCCTCAGTATCTGTAGT+TGG + chr2_3:36651214-36651233 None:intergenic 40.0%
GCAGAGAACAGAAATACTGT+CGG - chr2_3:36651558-36651577 Msa0290040:intron 40.0%
CAGAGAACAGAAATACTGTC+GGG - chr2_3:36651559-36651578 Msa0290040:intron 40.0%
AGAGAACAGAAATACTGTCG+GGG - chr2_3:36651560-36651579 Msa0290040:intron 40.0%
GTCATGTGATAGGTACTAAC+TGG - chr2_3:36651761-36651780 Msa0290040:intron 40.0%
TGTGATAGGTACTAACTGGA+AGG - chr2_3:36651765-36651784 Msa0290040:intron 40.0%
ATCGTGAACTTATTCCTACC+GGG - chr2_3:36651815-36651834 Msa0290040:intron 40.0%
AATGATATGCGAGTGACAGT+GGG + chr2_3:36651873-36651892 None:intergenic 40.0%
AAATGATATGCGAGTGACAG+TGG + chr2_3:36651874-36651893 None:intergenic 40.0%
GCCATGACATAGATGAATTG+AGG + chr2_3:36651946-36651965 None:intergenic 40.0%
ATTCATCTATGTCATGGCAG+TGG - chr2_3:36651948-36651967 Msa0290040:CDS 40.0%
GAATAGCGAGTAGATGTTAC+TGG + chr2_3:36651993-36652012 None:intergenic 40.0%
AAGTGAAACAAACAGGTAGG+AGG - chr2_3:36652188-36652207 Msa0290040:intron 40.0%
CAACAAGAGCAAGACAGGAT+TGG - chr2_3:36645463-36645482 Msa0290040:intron 45.0%
TTATGGCTTAATGGTGGTCC+TGG - chr2_3:36645628-36645647 Msa0290040:intron 45.0%
AATCTCATTGTCCACTCGTG+GGG + chr2_3:36645852-36645871 None:intergenic 45.0%
CAAATCTCATTGTCCACTCG+TGG + chr2_3:36645854-36645873 None:intergenic 45.0%
!! CTTTATGTTGACTCCCCTGT+CGG - chr2_3:36645977-36645996 Msa0290040:intron 45.0%
TGAAAATCCAACTCCGACAG+GGG + chr2_3:36645993-36646012 None:intergenic 45.0%
TCATCCGACATTCGCAACAA+TGG - chr2_3:36646025-36646044 Msa0290040:intron 45.0%
ATCGCCATTGTTGCGAATGT+CGG + chr2_3:36646032-36646051 None:intergenic 45.0%
TTCGCAACAATGGCGATAAG+AGG - chr2_3:36646035-36646054 Msa0290040:intron 45.0%
AACAATGGCGATAAGAGGAC+AGG - chr2_3:36646040-36646059 Msa0290040:intron 45.0%
AGGACAGGTAATGTCTCACT+TGG - chr2_3:36646055-36646074 Msa0290040:intron 45.0%
GAGTTGTTGTGGCACTGTAT+GGG + chr2_3:36646530-36646549 None:intergenic 45.0%
TGAGTTGTTGTGGCACTGTA+TGG + chr2_3:36646531-36646550 None:intergenic 45.0%
!! TGTAATTGGGCATTGGGAAG+TGG + chr2_3:36646911-36646930 None:intergenic 45.0%
!! TCTGGCTTCACTTTTGAAGG+AGG + chr2_3:36647142-36647161 None:intergenic 45.0%
TCCTTCAAAAGTGAAGCCAG+AGG - chr2_3:36647141-36647160 Msa0290040:intron 45.0%
! AAAAGTGAAGCCAGAGGCAT+AGG - chr2_3:36647147-36647166 Msa0290040:intron 45.0%
CCTCTAAATACCTATGCCTC+TGG + chr2_3:36647160-36647179 None:intergenic 45.0%
! CCAGAGGCATAGGTATTTAG+AGG - chr2_3:36647157-36647176 Msa0290040:intron 45.0%
AAGTGTTATGAGGGCCCTAA+AGG + chr2_3:36647219-36647238 None:intergenic 45.0%
TGGGGATGTTCCAGTTTATG+TGG - chr2_3:36647712-36647731 Msa0290040:intron 45.0%
TTCCAGTTTATGTGGTCCAG+TGG - chr2_3:36647720-36647739 Msa0290040:intron 45.0%
TACCACTGGACCACATAAAC+TGG + chr2_3:36647725-36647744 None:intergenic 45.0%
GTGGTCCAGTGGTATGATTT+CGG - chr2_3:36647731-36647750 Msa0290040:intron 45.0%
! GAATCTGATGGGTGTTCAAC+TGG + chr2_3:36647798-36647817 None:intergenic 45.0%
GGAGGGGTAAAGATACTGTA+TGG + chr2_3:36647870-36647889 None:intergenic 45.0%
TATCATTCGCATGGCAAGGA+GGG + chr2_3:36647887-36647906 None:intergenic 45.0%
TTATCATTCGCATGGCAAGG+AGG + chr2_3:36647888-36647907 None:intergenic 45.0%
CCAGCTGATTATCATTCGCA+TGG + chr2_3:36647896-36647915 None:intergenic 45.0%
CCATGCGAATGATAATCAGC+TGG - chr2_3:36647893-36647912 Msa0290040:intron 45.0%
TGTACTGCACCATCACAAAC+AGG + chr2_3:36648012-36648031 None:intergenic 45.0%
!! GAAGGAGCACTCCATTTATC+TGG + chr2_3:36648098-36648117 None:intergenic 45.0%
AACTCACACCTCTTCGTCTA+TGG - chr2_3:36648614-36648633 Msa0290040:intron 45.0%
TGGAATAGCCATAGACGAAG+AGG + chr2_3:36648625-36648644 None:intergenic 45.0%
! GAACTAGCATTTTGAACCCG+AGG + chr2_3:36648674-36648693 None:intergenic 45.0%
TGAGTGGAATTACAGTGTCG+GGG + chr2_3:36648850-36648869 None:intergenic 45.0%
GTGAGTGGAATTACAGTGTC+GGG + chr2_3:36648851-36648870 None:intergenic 45.0%
GAAAACAGAGTGGAAGTGAG+TGG + chr2_3:36648866-36648885 None:intergenic 45.0%
CATGACTTCCTCTCCTACAT+TGG - chr2_3:36649192-36649211 Msa0290040:intron 45.0%
!! GTTTTGGACCAATGTAGGAG+AGG + chr2_3:36649203-36649222 None:intergenic 45.0%
TCTACGCCACATGACTGAAA+TGG - chr2_3:36649349-36649368 Msa0290040:intron 45.0%
CAGAAGCCATTTCAGTCATG+TGG + chr2_3:36649358-36649377 None:intergenic 45.0%
TTGAATCCTGGAAGCAGAAC+CGG - chr2_3:36649524-36649543 Msa0290040:intron 45.0%
!! GTCCACTTTTAAGCATGCCT+AGG + chr2_3:36650002-36650021 None:intergenic 45.0%
ATGCAAACAAGGTCCAAGTC+AGG + chr2_3:36650121-36650140 None:intergenic 45.0%
! TGGACCTTGTTTGCATTCGA+TGG - chr2_3:36650125-36650144 Msa0290040:CDS 45.0%
CTGTCCATCGAATGCAAACA+AGG + chr2_3:36650132-36650151 None:intergenic 45.0%
TTGCATTCGATGGACAGCTA+TGG - chr2_3:36650135-36650154 Msa0290040:CDS 45.0%
GTTTGAGCATCATGGTGCAT+AGG - chr2_3:36650237-36650256 Msa0290040:CDS 45.0%
GTGCAGTAATAGGGGAAGAA+AGG - chr2_3:36650284-36650303 Msa0290040:intron 45.0%
GCAGTAATAGGGGAAGAAAG+GGG - chr2_3:36650286-36650305 Msa0290040:intron 45.0%
! AAGAAAGGGGAGGATTTTGG+AGG - chr2_3:36650299-36650318 Msa0290040:intron 45.0%
! AGAAAGGGGAGGATTTTGGA+GGG - chr2_3:36650300-36650319 Msa0290040:intron 45.0%
! AATGCAATGGGGAAGGGTTT+TGG + chr2_3:36650450-36650469 None:intergenic 45.0%
!!! TTTTAGCTCCCCCATATTGG+AGG - chr2_3:36650471-36650490 Msa0290040:intron 45.0%
! TTTAGCTCCCCCATATTGGA+GGG - chr2_3:36650472-36650491 Msa0290040:intron 45.0%
GTTTGGGAGTTTGGATGGAA+AGG + chr2_3:36650606-36650625 None:intergenic 45.0%
GCTATGTTTGGGAGTTTGGA+TGG + chr2_3:36650611-36650630 None:intergenic 45.0%
TTGGGCTATGTTTGGGAGTT+TGG + chr2_3:36650615-36650634 None:intergenic 45.0%
GTCCATCTTGGGCTATGTTT+GGG + chr2_3:36650622-36650641 None:intergenic 45.0%
CTGAAGGTTGCAACTAATGC+AGG - chr2_3:36650675-36650694 Msa0290040:intron 45.0%
AAGGTTGCAACTAATGCAGG+TGG - chr2_3:36650678-36650697 Msa0290040:intron 45.0%
GATTGAGACTTGAGAGGATC+CGG - chr2_3:36650966-36650985 Msa0290040:intron 45.0%
ATTGAGACTTGAGAGGATCC+GGG - chr2_3:36650967-36650986 Msa0290040:intron 45.0%
! GGTTGTTTCGGACAATAGGT+AGG + chr2_3:36651128-36651147 None:intergenic 45.0%
ATGCTGTGTTTCTCTGTGCA+AGG + chr2_3:36651356-36651375 None:intergenic 45.0%
GATCAACATGTAGAGCCCTT+TGG + chr2_3:36651403-36651422 None:intergenic 45.0%
!! CTGTTTTGAGTCTTACCTGC+AGG + chr2_3:36651453-36651472 None:intergenic 45.0%
GAATATCCATATACGCAGCC+CGG + chr2_3:36651836-36651855 None:intergenic 45.0%
GGCTGCGTATATGGATATTC+AGG - chr2_3:36651836-36651855 Msa0290040:intron 45.0%
GAAACAAACAGGTAGGAGGA+TGG - chr2_3:36652192-36652211 Msa0290040:intron 45.0%
TGTGAGTCCAGCGTATTCTT+GGG + chr2_3:36652219-36652238 None:intergenic 45.0%
ATGTGAGTCCAGCGTATTCT+TGG + chr2_3:36652220-36652239 None:intergenic 45.0%
! TTTGTTAACGTAAGGGGTGC+CGG - chr2_3:36652239-36652258 Msa0290040:CDS 45.0%
!! GCAAGTTTTGGTCTATGCAG+AGG + chr2_3:36652275-36652294 None:intergenic 45.0%
! CATGGAGGTTCCTTCTAAGA+AGG + chr2_3:36652315-36652334 None:intergenic 45.0%
!!! TTATAAATTTTTTATAAACA+TGG + chr2_3:36651710-36651729 None:intergenic 5.0%
CAGTGAATGAGGATGCTGGT+AGG - chr2_3:36645545-36645564 Msa0290040:intron 50.0%
!! GCCTCTGGCTTCACTTTTGA+AGG + chr2_3:36647145-36647164 None:intergenic 50.0%
ATCAGTGGTGAGAGCTATGC+AGG - chr2_3:36647377-36647396 Msa0290040:intron 50.0%
TACACTTGTCTGCTGCAGGT+AGG - chr2_3:36647657-36647676 Msa0290040:intron 50.0%
ATCATTCGCATGGCAAGGAG+GGG + chr2_3:36647886-36647905 None:intergenic 50.0%
! TGGCACATGAGAGTGTACCT+CGG - chr2_3:36648654-36648673 Msa0290040:intron 50.0%
! GAGTGGAATTACAGTGTCGG+GGG + chr2_3:36648849-36648868 None:intergenic 50.0%
! CTTCCACTCTGTTTTCCCTG+TGG - chr2_3:36648870-36648889 Msa0290040:intron 50.0%
ATGCCACAGGGAAAACAGAG+TGG + chr2_3:36648876-36648895 None:intergenic 50.0%
ACTGAAATGGCTTCTGCCAC+AGG - chr2_3:36649362-36649381 Msa0290040:intron 50.0%
CAGAGGAATTGAGATGCCTG+TGG + chr2_3:36649381-36649400 None:intergenic 50.0%
! AGTTTGGGACAGGAGGAGTT+TGG - chr2_3:36649491-36649510 Msa0290040:intron 50.0%
AGAGTTCGGAATTCGGCTGT+AGG - chr2_3:36649741-36649760 Msa0290040:intron 50.0%
! GAGCACTGTAACAGCCTTAC+AGG - chr2_3:36649891-36649910 Msa0290040:intron 50.0%
TTCTGTGTAACGGTCCTCCT+AGG - chr2_3:36649968-36649987 Msa0290040:intron 50.0%
GGCCTAGGCATGCTTAAAAG+TGG - chr2_3:36649997-36650016 Msa0290040:intron 50.0%
!!! GTACGATGCAGTTTTGGGCA+TGG - chr2_3:36650059-36650078 Msa0290040:CDS 50.0%
CATCATGGTGCATAGGTGCA+GGG - chr2_3:36650244-36650263 Msa0290040:CDS 50.0%
GTAATAGGGGAAGAAAGGGG+AGG - chr2_3:36650289-36650308 Msa0290040:intron 50.0%
! GGGAAGAAAGGGGAGGATTT+TGG - chr2_3:36650296-36650315 Msa0290040:intron 50.0%
! GAAAGGGAGGGAGAGTTTTG+AGG + chr2_3:36650589-36650608 None:intergenic 50.0%
GGAGTTTGGATGGAAAGGGA+GGG + chr2_3:36650601-36650620 None:intergenic 50.0%
CTCCCAAACATAGCCCAAGA+TGG - chr2_3:36650617-36650636 Msa0290040:intron 50.0%
GGTCCATCTTGGGCTATGTT+TGG + chr2_3:36650623-36650642 None:intergenic 50.0%
CTGAAATGTTGGCAGCGTGA+CGG + chr2_3:36650816-36650835 None:intergenic 50.0%
TCAATCGACCAGAGGTCCAA+AGG - chr2_3:36651384-36651403 Msa0290040:intron 50.0%
CAATCGACCAGAGGTCCAAA+GGG - chr2_3:36651385-36651404 Msa0290040:intron 50.0%
! CTGCAGGTCTGCCATTTATC+AGG + chr2_3:36651437-36651456 None:intergenic 50.0%
CTGATAAATGGCAGACCTGC+AGG - chr2_3:36651435-36651454 Msa0290040:intron 50.0%
!! TTGTTAACGTAAGGGGTGCC+GGG - chr2_3:36652240-36652259 Msa0290040:CDS 50.0%
TGGTTCAAGAGTTGGCATGG+AGG + chr2_3:36652330-36652349 None:intergenic 50.0%
AGTGTGCGTGGTTCAAGAGT+TGG + chr2_3:36652338-36652357 None:intergenic 50.0%
! AGGATTGGCATAGCACTCCC+AGG - chr2_3:36645478-36645497 Msa0290040:intron 55.0%
! GGCACATGAGAGTGTACCTC+GGG - chr2_3:36648655-36648674 Msa0290040:intron 55.0%
! GAATTACAGTGTCGGGGGCA+AGG + chr2_3:36648844-36648863 None:intergenic 55.0%
TCCCTGTGGCATAATCGGTG+AGG - chr2_3:36648884-36648903 Msa0290040:intron 55.0%
! GCCTCACCGATTATGCCACA+GGG + chr2_3:36648888-36648907 None:intergenic 55.0%
!! TTACTGCCGGTTCTGCTTCC+AGG + chr2_3:36649533-36649552 None:intergenic 55.0%
TGTGTAACGGTCCTCCTAGG+AGG - chr2_3:36649971-36649990 Msa0290040:intron 55.0%
TAACGGTCCTCCTAGGAGGA+AGG - chr2_3:36649975-36649994 Msa0290040:intron 55.0%
AACGGTCCTCCTAGGAGGAA+GGG - chr2_3:36649976-36649995 Msa0290040:intron 55.0%
GCATCATGGTGCATAGGTGC+AGG - chr2_3:36650243-36650262 Msa0290040:CDS 55.0%
GGGAGTTTGGATGGAAAGGG+AGG + chr2_3:36650602-36650621 None:intergenic 55.0%
TGTAGAGCCCTTTGGACCTC+TGG + chr2_3:36651395-36651414 None:intergenic 55.0%
TTCCTACCGGGCTGCGTATA+TGG - chr2_3:36651827-36651846 Msa0290040:intron 55.0%
ATCCATATACGCAGCCCGGT+AGG + chr2_3:36651832-36651851 None:intergenic 55.0%
AGCTTCCAACTGTGAGCCCA+TGG - chr2_3:36652027-36652046 Msa0290040:intron 55.0%
CGTCATACCATGCACGCCAT+GGG + chr2_3:36652046-36652065 None:intergenic 55.0%
TCGTCATACCATGCACGCCA+TGG + chr2_3:36652047-36652066 None:intergenic 55.0%
TGGCGTGCATGGTATGACGA+CGG - chr2_3:36652047-36652066 Msa0290040:intron 55.0%
GGATGGACCCAAGAATACGC+TGG - chr2_3:36652209-36652228 Msa0290040:CDS 55.0%
ATGCAGAGGAACTTCGTGCC+CGG + chr2_3:36652261-36652280 None:intergenic 55.0%
GCGTGGTTCAAGAGTTGGCA+TGG + chr2_3:36652333-36652352 None:intergenic 55.0%
TTTCGATTGGGCCCCACGAG+TGG - chr2_3:36645838-36645857 Msa0290040:intron 60.0%
! GTTGACTCCCCTGTCGGAGT+TGG - chr2_3:36645983-36646002 Msa0290040:intron 60.0%
! TACAGTGTCGGGGGCAAGGT+GGG + chr2_3:36648840-36648859 None:intergenic 60.0%
! TTACAGTGTCGGGGGCAAGG+TGG + chr2_3:36648841-36648860 None:intergenic 60.0%
! GGCCTCACCGATTATGCCAC+AGG + chr2_3:36648889-36648908 None:intergenic 60.0%
ATGCCTAGGCCCTTCCTCCT+AGG + chr2_3:36649988-36650007 None:intergenic 60.0%
GGTGCATAGGTGCAGGGTGA+AGG - chr2_3:36650250-36650269 Msa0290040:CDS 60.0%
AGCAGGTGGCAACAGCTGTG+TGG + chr2_3:36650781-36650800 None:intergenic 60.0%
ACACAGCTGTTGCCACCTGC+TGG - chr2_3:36650780-36650799 Msa0290040:intron 60.0%
GGAGCAACAGATCCAGCAGG+TGG + chr2_3:36650795-36650814 None:intergenic 60.0%
GACGGAGCAACAGATCCAGC+AGG + chr2_3:36650798-36650817 None:intergenic 60.0%
GGCGTGCATGGTATGACGAC+GGG - chr2_3:36652048-36652067 Msa0290040:intron 60.0%
GCGTGCATGGTATGACGACG+GGG - chr2_3:36652049-36652068 Msa0290040:intron 60.0%
TGCATGGTATGACGACGGGG+AGG - chr2_3:36652052-36652071 Msa0290040:intron 60.0%
ATTGCAGCGGTGAGTGTGCG+TGG + chr2_3:36652350-36652369 None:intergenic 60.0%
CCTAGGCCCTTCCTCCTAGG+AGG + chr2_3:36649985-36650004 None:intergenic 65.0%
CCTCCTAGGAGGAAGGGCCT+AGG - chr2_3:36649982-36650001 Msa0290040:intron 65.0%
GCACGCCATGGGCTCACAGT+TGG + chr2_3:36652035-36652054 None:intergenic 65.0%
CTGTGAGCCCATGGCGTGCA+TGG - chr2_3:36652036-36652055 Msa0290040:intron 65.0%
GTGTCGGGGGCAAGGTGGGA+AGG + chr2_3:36648836-36648855 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 36645367 36652580 36645367 ID=Msa0290040;Name=Msa0290040
chr2_3 mRNA 36645367 36652580 36645367 ID=Msa0290040-mRNA-1;Parent=Msa0290040;Name=Msa0290040-mRNA-1;_AED=0.23;_eAED=0.27;_QI=0|0.6|0.36|1|0.6|0.54|11|0|396
chr2_3 exon 36652412 36652580 36652412 ID=Msa0290040-mRNA-1:exon:12019;Parent=Msa0290040-mRNA-1
chr2_3 exon 36652196 36652399 36652196 ID=Msa0290040-mRNA-1:exon:12018;Parent=Msa0290040-mRNA-1
chr2_3 exon 36651947 36651981 36651947 ID=Msa0290040-mRNA-1:exon:12017;Parent=Msa0290040-mRNA-1
chr2_3 exon 36650549 36650612 36650549 ID=Msa0290040-mRNA-1:exon:12016;Parent=Msa0290040-mRNA-1
chr2_3 exon 36650381 36650466 36650381 ID=Msa0290040-mRNA-1:exon:12015;Parent=Msa0290040-mRNA-1
chr2_3 exon 36650092 36650272 36650092 ID=Msa0290040-mRNA-1:exon:12014;Parent=Msa0290040-mRNA-1
chr2_3 exon 36650018 36650082 36650018 ID=Msa0290040-mRNA-1:exon:12013;Parent=Msa0290040-mRNA-1
chr2_3 exon 36646491 36646624 36646491 ID=Msa0290040-mRNA-1:exon:12012;Parent=Msa0290040-mRNA-1
chr2_3 exon 36646090 36646185 36646090 ID=Msa0290040-mRNA-1:exon:12011;Parent=Msa0290040-mRNA-1
chr2_3 exon 36645874 36645979 36645874 ID=Msa0290040-mRNA-1:exon:12010;Parent=Msa0290040-mRNA-1
chr2_3 exon 36645367 36645417 36645367 ID=Msa0290040-mRNA-1:exon:12009;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36652412 36652580 36652412 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36652196 36652399 36652196 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36651947 36651981 36651947 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36650549 36650612 36650549 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36650381 36650466 36650381 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36650092 36650272 36650092 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36650018 36650082 36650018 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36646491 36646624 36646491 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36646090 36646185 36646090 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36645874 36645979 36645874 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
chr2_3 CDS 36645367 36645417 36645367 ID=Msa0290040-mRNA-1:cds;Parent=Msa0290040-mRNA-1
Gene Sequence

>Msa0290040

ATGGCCAATTTTGAGTGGTCTCAAATTTTGGCCATAACATTGGCAACCCTTTTCCTATGCAACAACAATTTCACATATGCAACAGACCCATTTGTTCAACAAGAGCAAGACAGGATTGGCATAGCACTCCCAGGTCAAAACTTCAATATCAGTTTTGAACACTATTCTGTGAATGAGGATGCTGGTAGGAACTTGTTTTACTGGTTCATTCAAGCTGATCATGTAGATCCTACTTCAAAGCCACTTCTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCTATTGCTTTTGGTGAAGCTGAAGAAATTGGTCCTTTTCATATTAATTCTGATGCTAAAACCCTCTATCTTAATCCATATTCTTGGAATCAAGTTGCCAACATTCTTTATGTTGACTCCCCTGTCGGATGGTTTGAGCGTTTTCCCCAGTATAAAAACACAGACTTCTTCATCAGTGGTGAGAGCTATGCAGGACATTATGTTCCGCAACTTAGCCAAGTTATTGCCAAGTACAACTTAGATACAAAACAAGATTCTATAAATCTCAAAGGGTACATGGTAGGAAATGCTCTAACAGATGATTTCAGTGATCAATTGGGGATGTTCCAGTTTATGTGGTCCAGTGGTATGATTTCGGATCAAACATTCAAGCTCCTGAATCTGCTATGTGATTTTCAGCCAGTTGAACACCCATCAGATTCATGTAACAAAATCTGGGAAATTGCCTATGAAGAAATGGACCCATACAGTATCTTTACCCCTCCTTGCCATGCGAATGATAATCAGCTGGATAAAAGAAAGCATATTTTTGGAAGACTCAGAAGTGTGTATGATCCTTGCACAGAGAAACACAGCATTATATACTTCAATCGACCAGAGGTCCAAAGGGCTCTACATGTTGATCCAGATCATAAGCCTGATAAATGGCAGACCTGCAGTCATGTGATAGGTACTAACTGGAAGGATTCTCCTAGATCAGTGCTCAATATATATCGTGAACTTATTCCTACCGGGCTGCGTATATGGATATTCAGTGGTAATACTGATGCTGTAATCCCAGTAACATCTACTCGCTATTCCATAAATGCTCTTAAGCTTCCAACTGTGAGCCCATGGCGTGCATGGTATGACGACGGGGAGAAAAGAAGTGGTGAATGTGATATGTTGTTCCTCAACCAAAGACTTGTTTAA
Protein sequence

>Msa0290040

MANFEWSQILAITLATLFLCNNNFTYATDPFVQQEQDRIGIALPGQNFNISFEHYSVNEDAGRNLFYWFIQADHVDPTSKPLLLWLNGGPGCSSIAFGEAEEIGPFHINSDAKTLYLNPYSWNQVANILYVDSPVGWFERFPQYKNTDFFISGESYAGHYVPQLSQVIAKYNLDTKQDSINLKGYMVGNALTDDFSDQLGMFQFMWSSGMISDQTFKLLNLLCDFQPVEHPSDSCNKIWEIAYEEMDPYSIFTPPCHANDNQLDKRKHIFGRLRSVYDPCTEKHSIIYFNRPEVQRALHVDPDHKPDKWQTCSHVIGTNWKDSPRSVLNIYRELIPTGLRIWIFSGNTDAVIPVTSTRYSINALKLPTVSPWRAWYDDGEKRSGECDMLFLNQRLV*