AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0330270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0330270 MtrunA17_Chr2g0312531 95.000 260 9 1 1 256 49 308 2.18e-180 502
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0330270 AT1G55980.2 65.490 255 84 1 6 256 21 275 3.72e-119 343
Msa0330270 AT1G56000.1 65.490 255 84 1 6 256 21 275 2.38e-118 343
Msa0330270 AT1G55980.1 65.490 255 84 1 6 256 161 415 1.72e-117 344
Msa0330270 AT1G55980.3 61.502 213 78 1 48 256 8 220 1.77e-91 271
Msa0330270 AT1G56000.2 61.502 213 78 1 48 256 8 220 1.35e-90 271
Msa0330270 AT3G04650.1 28.016 257 154 9 7 252 94 330 4.37e-19 86.7

Find 65 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACTACCACTGTCTTTA+AGG 0.063591 2_4:-44496260 Msa0330270:CDS
CTCTATGTTGTCAAATTTAA+TGG 0.106504 2_4:+44495034 None:intergenic
CAAAATCTTGGTCAGTTTAA+AGG 0.201127 2_4:-44494547 Msa0330270:CDS
AATAGGAAAAGAACCTTCTT+TGG 0.229970 2_4:+44496005 None:intergenic
TATGTTCAGATTCCAGTTAA+AGG 0.288822 2_4:-44492376 Msa0330270:intron
AAGAGATTTGTGGGTGTTCC+AGG 0.300128 2_4:-44494783 Msa0330270:CDS
GTCTTTAAGGTTGCTGTGTT+GGG 0.311565 2_4:-44496247 Msa0330270:CDS
AGCAAGTTTGGTGTGGGTAT+TGG 0.312552 2_4:-44494625 Msa0330270:CDS
TTAATTGAGAAGCCTTTAAC+TGG 0.325933 2_4:+44492364 None:intergenic
AAAATTCTAAAGTTCTAAGT+TGG 0.347059 2_4:-44492342 Msa0330270:CDS
TTAGGTGTGGAAAGCAAGTT+TGG 0.352186 2_4:-44494637 Msa0330270:intron
ACTGCGAAACATGGCCTAAC+AGG 0.363797 2_4:+44493500 None:intergenic
TGAACTAGACGAGCCACTTC+AGG 0.384189 2_4:+44495122 None:intergenic
TGTCTTTAAGGTTGCTGTGT+TGG 0.412707 2_4:-44496248 Msa0330270:CDS
ATAGGAAAAGAACCTTCTTT+GGG 0.416059 2_4:+44496006 None:intergenic
CTTTGGGACATGCGTCCACC+AGG 0.427017 2_4:+44496022 None:intergenic
TTTGAGTCTGCTAGAGGCCC+TGG 0.449558 2_4:-44496040 Msa0330270:CDS
GCCATGTTTCGCAGTTATGC+TGG 0.452788 2_4:-44493492 Msa0330270:CDS
AAATTCTAAAGTTCTAAGTT+GGG 0.454731 2_4:-44492341 Msa0330270:CDS
GAGAAATTGTGGTCATTGAT+AGG 0.459014 2_4:-44494580 Msa0330270:CDS
TCTAGAGAGAAAACTGAAGA+TGG 0.459795 2_4:-44495194 Msa0330270:intron
GCTGAATGGAGAGAAAAGTT+TGG 0.467648 2_4:-44495074 Msa0330270:CDS
GGACTAAGCAAGAGATTTGT+GGG 0.467979 2_4:-44494792 Msa0330270:CDS
AGTTGCACAACCTTCCTGTT+AGG 0.481488 2_4:-44493514 Msa0330270:CDS
GCATCAACTCTTGCTAGAAA+TGG 0.485520 2_4:-44496079 Msa0330270:CDS
AAGGTTGCTGTGTTGGGTGG+TGG 0.487031 2_4:-44496241 Msa0330270:CDS
ATAAGAACATAGTTTCTACT+AGG 0.492921 2_4:-44494510 Msa0330270:CDS
CGAGGGGTCTCGTAGCTGAA+TGG 0.495649 2_4:-44495088 Msa0330270:CDS
TAAATTTGACAACATAGAGC+AGG 0.504476 2_4:-44495030 Msa0330270:intron
TTGCATATAGAATTCATGCC+TGG 0.504523 2_4:+44494765 None:intergenic
TACTGTGATAGCAGGAAGCC+AGG 0.508981 2_4:-44492316 Msa0330270:CDS
CTCGGTTAGCAAGCCTGAAG+TGG 0.510458 2_4:-44495135 Msa0330270:CDS
AGGACTAAGCAAGAGATTTG+TGG 0.517881 2_4:-44494793 Msa0330270:CDS
GGTGTGGATGGACAAAATCT+TGG 0.523630 2_4:-44494559 Msa0330270:CDS
TGGGTATTGGAAGAGTTGAA+TGG 0.559316 2_4:-44494612 Msa0330270:CDS
TACCTTGCAGTAGAACGGCC+TGG 0.564395 2_4:+44492298 None:intergenic
ACACTCTTTGAGTCTGCTAG+AGG 0.565822 2_4:-44496046 Msa0330270:CDS
AGAGAAAACTGAAGATGGGA+AGG 0.566879 2_4:-44495189 Msa0330270:CDS
CTAGAGAGAAAACTGAAGAT+GGG 0.567373 2_4:-44495193 Msa0330270:intron
TATTGGAAGAGTTGAATGGT+TGG 0.571536 2_4:-44494608 Msa0330270:CDS
ACTAGGATTGCAGATGTCAC+AGG 0.578838 2_4:-44494493 Msa0330270:CDS
GTTGGGCTTACTGTGATAGC+AGG 0.579207 2_4:-44492324 Msa0330270:CDS
ATTTGCAGAGCCTTTGTCAA+CGG 0.584190 2_4:-44493468 Msa0330270:intron
GCCAGCATAACTGCGAAACA+TGG 0.585902 2_4:+44493491 None:intergenic
ACAAATACCTTGCAGTAGAA+CGG 0.586215 2_4:+44492293 None:intergenic
ACAGGACGGTTGCCACCACT+TGG 0.588089 2_4:-44494475 Msa0330270:intron
AGCCAGGCCGTTCTACTGCA+AGG 0.588379 2_4:-44492300 Msa0330270:intron
GTGGACGCATGTCCCAAAGA+AGG 0.590847 2_4:-44496018 Msa0330270:intron
TTTAAGGTTGCTGTGTTGGG+TGG 0.593128 2_4:-44496244 Msa0330270:CDS
GGTTGGATGATGAGAAATTG+TGG 0.598955 2_4:-44494591 Msa0330270:CDS
AGTTCAAGAATAGGAGTCGA+GGG 0.599350 2_4:-44495105 Msa0330270:intron
TGTGGAAAGCAAGTTTGGTG+TGG 0.614933 2_4:-44494632 Msa0330270:CDS
TGGTCATTGATAGGTGTGGA+TGG 0.617485 2_4:-44494571 Msa0330270:CDS
GTGGAAAGCAAGTTTGGTGT+GGG 0.619348 2_4:-44494631 Msa0330270:CDS
CTTCATCATACCGTTGACAA+AGG 0.619900 2_4:+44493458 None:intergenic
TAGTTCAAGAATAGGAGTCG+AGG 0.622789 2_4:-44495106 Msa0330270:intron
CGAAACATGGCCTAACAGGA+AGG 0.635068 2_4:+44493504 None:intergenic
TTTGGGACATGCGTCCACCA+GGG 0.639991 2_4:+44496023 None:intergenic
AGCATATTCATACCAAGTGG+TGG 0.641539 2_4:+44494463 None:intergenic
GAGTCTGCTAGAGGCCCTGG+TGG 0.667455 2_4:-44496037 Msa0330270:CDS
AAAGCATTATGCAACGAGAG+TGG 0.676560 2_4:-44494744 Msa0330270:intron
CACAGCAACCTTAAAGACAG+TGG 0.684823 2_4:+44496252 None:intergenic
ATTGTGGTCATTGATAGGTG+TGG 0.696169 2_4:-44494575 Msa0330270:CDS
GTTCAAGAATAGGAGTCGAG+GGG 0.707586 2_4:-44495104 Msa0330270:intron
GGATTGCAGATGTCACAGGA+CGG 0.734670 2_4:-44494489 Msa0330270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr2_4:44496192-44496211 None:intergenic 0.0%
!!! TTTCCTATTTTTTTATTTAA+TGG - chr2_4:44489092-44489111 Msa0330270:intron 10.0%
!!! TTCCTATTTTTTTATTTAAT+GGG - chr2_4:44489093-44489112 Msa0330270:intron 10.0%
!! TAATTATTCTTATATTTCTT+TGG - chr2_4:44489124-44489143 Msa0330270:intron 10.0%
!!! GATTATTATTTCTTATTATT+AGG - chr2_4:44490428-44490447 Msa0330270:intron 10.0%
!! ATTATTATTATTAATAATGG+TGG + chr2_4:44492946-44492965 None:intergenic 10.0%
!! GAGATTATTATTATTAATAA+TGG + chr2_4:44492949-44492968 None:intergenic 10.0%
!!! ACCTTTTTTAAAAAAATATT+GGG + chr2_4:44492978-44492997 None:intergenic 10.0%
!!! AACCTTTTTTAAAAAAATAT+TGG + chr2_4:44492979-44492998 None:intergenic 10.0%
!! TAATGTTAACAAAATAATTT+CGG + chr2_4:44495159-44495178 None:intergenic 10.0%
!! TAAATATAAATAAAAGCAAA+TGG - chr2_4:44495243-44495262 Msa0330270:intron 10.0%
!!! TATGATTATGATTTTTGAAA+TGG - chr2_4:44488958-44488977 Msa0330270:intron 15.0%
!! ATCCCATTAAATAAAAAAAT+AGG + chr2_4:44489098-44489117 None:intergenic 15.0%
!!! TAAAAGTTTGTTTTTTTGTT+AGG - chr2_4:44490676-44490695 Msa0330270:intron 15.0%
!! TTTAATATATATAAGCTAGA+TGG + chr2_4:44490721-44490740 None:intergenic 15.0%
!!! TGATATATTTTACATGATTT+TGG - chr2_4:44491250-44491269 Msa0330270:intron 15.0%
!! TTGATAAAACTAGAATATAT+GGG + chr2_4:44492310-44492329 None:intergenic 15.0%
!! TTTGATAAAACTAGAATATA+TGG + chr2_4:44492311-44492330 None:intergenic 15.0%
!!! TCCCAATATTTTTTTAAAAA+AGG - chr2_4:44492974-44492993 Msa0330270:intron 15.0%
!!! AATAATTAAAGTTTTCTCTA+TGG - chr2_4:44493314-44493333 Msa0330270:intron 15.0%
!!! TTTGTTGTGATAAATATTAA+TGG + chr2_4:44493391-44493410 None:intergenic 15.0%
!! ATGAAAAAAATTGATAGAAA+GGG + chr2_4:44493480-44493499 None:intergenic 15.0%
!! AATGAAAAAAATTGATAGAA+AGG + chr2_4:44493481-44493500 None:intergenic 15.0%
!! CATAAATTGAAATTTAATAG+TGG + chr2_4:44493665-44493684 None:intergenic 15.0%
!! AATATAAGCAAATTTGATAA+CGG - chr2_4:44494214-44494233 Msa0330270:intron 15.0%
!!! GTATATTTGTATTTTACTTT+GGG + chr2_4:44494363-44494382 None:intergenic 15.0%
!! TAATTGAAAATTGTTTATTG+CGG + chr2_4:44494889-44494908 None:intergenic 15.0%
!!! TTTACCTTCATTTTTTTTTT+TGG - chr2_4:44494921-44494940 Msa0330270:intron 15.0%
!! CAAATATAAATAAAAGCAAA+TGG - chr2_4:44495218-44495237 Msa0330270:intron 15.0%
!!! TTTTTTTCAATATTCTCTTT+GGG + chr2_4:44495632-44495651 None:intergenic 15.0%
!!! TTTTTTTTCAATATTCTCTT+TGG + chr2_4:44495633-44495652 None:intergenic 15.0%
!! TTATCAAATAACAGATATAG+TGG + chr2_4:44489244-44489263 None:intergenic 20.0%
!! AATTACATGCATTAAAACAA+TGG + chr2_4:44489678-44489697 None:intergenic 20.0%
!!! TTTTATAGATTGTCATTGTT+TGG - chr2_4:44489713-44489732 Msa0330270:intron 20.0%
!!! CTATGTTTTTCTAATATTTG+AGG + chr2_4:44490127-44490146 None:intergenic 20.0%
!!! TTAGAAAAACATAGATTTTC+TGG - chr2_4:44490133-44490152 Msa0330270:intron 20.0%
!!! TAGAAAAACATAGATTTTCT+GGG - chr2_4:44490134-44490153 Msa0330270:intron 20.0%
!!! ATAATAGTTTTTTCTATGAC+TGG - chr2_4:44490253-44490272 Msa0330270:intron 20.0%
!!! GAAATAATAATCATTTTCAC+TGG + chr2_4:44490420-44490439 None:intergenic 20.0%
!!! TTATTTCTTATTATTAGGTG+TGG - chr2_4:44490433-44490452 Msa0330270:intron 20.0%
!!! CTGATTAGTTATTTTTGAAA+GGG - chr2_4:44490888-44490907 Msa0330270:intron 20.0%
!! ACAGTATTATGTACTAAATA+AGG + chr2_4:44490995-44491014 None:intergenic 20.0%
!! AACATGTTAATATGTTATTG+TGG + chr2_4:44491116-44491135 None:intergenic 20.0%
!!! TAATTGATAGAACTTTAGAA+AGG - chr2_4:44491336-44491355 Msa0330270:intron 20.0%
!! TATAGAATATAACGAAGTTA+CGG + chr2_4:44491661-44491680 None:intergenic 20.0%
!! TAAGATTGTTAGTAAAAAGA+AGG - chr2_4:44491982-44492001 Msa0330270:intron 20.0%
!! GTAATTACAAATAAGAGTTT+AGG - chr2_4:44492070-44492089 Msa0330270:intron 20.0%
!!! ATTATTTTGTTTATCCAAAC+AGG - chr2_4:44492577-44492596 Msa0330270:intron 20.0%
!!! TTATTTTGTTTATCCAAACA+GGG - chr2_4:44492578-44492597 Msa0330270:intron 20.0%
!!! CTATTTTTAATCTTCCATAT+AGG - chr2_4:44492627-44492646 Msa0330270:intron 20.0%
!!! AAAATTCTAAAGTTCTAAGT+TGG - chr2_4:44492741-44492760 Msa0330270:intron 20.0%
!!! AAATTCTAAAGTTCTAAGTT+GGG - chr2_4:44492742-44492761 Msa0330270:intron 20.0%
!! TTAAAAAAATATTGGGAAAG+TGG + chr2_4:44492971-44492990 None:intergenic 20.0%
!!! TTTATTTTACAGTGAAAGAT+GGG - chr2_4:44493022-44493041 Msa0330270:intron 20.0%
!!! TAAATAACAAGTAAACCTTT+TGG + chr2_4:44493859-44493878 None:intergenic 20.0%
!! GAAAAGTAAAATGCTTATAT+TGG - chr2_4:44494046-44494065 Msa0330270:intron 20.0%
!!! GGTATATTTGTATTTTACTT+TGG + chr2_4:44494364-44494383 None:intergenic 20.0%
!!! GCAATAAACAATTTTCAATT+AGG - chr2_4:44494888-44494907 Msa0330270:intron 20.0%
!! AAATGAAGGTAAAAAAATGA+AGG + chr2_4:44494914-44494933 None:intergenic 20.0%
!! GTAACCAAAAAAAAAAATGA+AGG + chr2_4:44494928-44494947 None:intergenic 20.0%
!!! TTTTTTCAATATTCTCTTTG+GGG + chr2_4:44495631-44495650 None:intergenic 20.0%
!! TGTTAATCATACGATAAATT+GGG + chr2_4:44496104-44496123 None:intergenic 20.0%
!! ATGTTAATCATACGATAAAT+TGG + chr2_4:44496105-44496124 None:intergenic 20.0%
! TTTAATAAAACAGTGTTTCG+TGG - chr2_4:44489394-44489413 Msa0330270:intron 25.0%
!!! AGTTTCTTTCTGAAAGATTT+TGG - chr2_4:44489455-44489474 Msa0330270:intron 25.0%
! TTGATTATTTGTACTCATCA+TGG - chr2_4:44489519-44489538 Msa0330270:intron 25.0%
! TGATTATTTGTACTCATCAT+GGG - chr2_4:44489520-44489539 Msa0330270:intron 25.0%
! AAATGAATTCCAGTAACATT+CGG + chr2_4:44489815-44489834 None:intergenic 25.0%
!! TTGGCTTAGTGTTAATTTTA+AGG - chr2_4:44489837-44489856 Msa0330270:intron 25.0%
! TTCCAGAAAATAAGAAACTT+AGG + chr2_4:44489868-44489887 None:intergenic 25.0%
! CTCTATGTTGTCAAATTTAA+TGG + chr2_4:44490052-44490071 None:intergenic 25.0%
! ATAAGAACATAGTTTCTACT+AGG - chr2_4:44490573-44490592 Msa0330270:intron 25.0%
! ACAAAAGTAACAAAAGTGAT+TGG - chr2_4:44490761-44490780 Msa0330270:intron 25.0%
! AGGTACTACAATTCTTAATT+TGG - chr2_4:44490830-44490849 Msa0330270:intron 25.0%
! AATAACTAATCAGCAATTCA+AGG + chr2_4:44490881-44490900 None:intergenic 25.0%
!!! GCTGATTAGTTATTTTTGAA+AGG - chr2_4:44490887-44490906 Msa0330270:intron 25.0%
!!! TATTTTTGAAAGGGTATTGT+CGG - chr2_4:44490897-44490916 Msa0330270:intron 25.0%
! GCAATAAGAATATAAGATCA+AGG + chr2_4:44491220-44491239 None:intergenic 25.0%
! CCATAAAATAGTCACTTATT+TGG + chr2_4:44491407-44491426 None:intergenic 25.0%
!! CCAAATAAGTGACTATTTTA+TGG - chr2_4:44491404-44491423 Msa0330270:intron 25.0%
! ATAACTTCGTGAATGAAAAA+AGG + chr2_4:44491810-44491829 None:intergenic 25.0%
! ACTGTTACAATGTAAAACAT+GGG - chr2_4:44491933-44491952 Msa0330270:intron 25.0%
!!! TTATTTGTTGATAAGTTGGT+TGG - chr2_4:44492112-44492131 Msa0330270:intron 25.0%
!!! TATTTGTTGATAAGTTGGTT+GGG - chr2_4:44492113-44492132 Msa0330270:intron 25.0%
!!! GCTTTTTTCTTAAGTTTTTC+CGG + chr2_4:44492408-44492427 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG + chr2_4:44492441-44492460 None:intergenic 25.0%
!!! TTCTTTTTCATAAGCTATGA+TGG + chr2_4:44492476-44492495 None:intergenic 25.0%
!!! CTTTATTTTACAGTGAAAGA+TGG - chr2_4:44493021-44493040 Msa0330270:intron 25.0%
! AATGCAGTAATGAAACATAA+AGG + chr2_4:44493274-44493293 None:intergenic 25.0%
! TTATGTTTCATTACTGCATT+TGG - chr2_4:44493274-44493293 Msa0330270:intron 25.0%
!! AAGAAAATGTACGTATTGAT+TGG + chr2_4:44493416-44493435 None:intergenic 25.0%
! CAAAGAAGAAATGTTTATGA+AGG + chr2_4:44493455-44493474 None:intergenic 25.0%
! TTTGCAAATTCCATATAGTT+GGG + chr2_4:44493524-44493543 None:intergenic 25.0%
!! TTTTGCAAATTCCATATAGT+TGG + chr2_4:44493525-44493544 None:intergenic 25.0%
!!! CTTGTTATTTAGAAGATGTT+TGG - chr2_4:44493868-44493887 Msa0330270:intron 25.0%
! TTATTGTCCACAAATTAAAG+GGG + chr2_4:44493965-44493984 None:intergenic 25.0%
! CTTATTGTCCACAAATTAAA+GGG + chr2_4:44493966-44493985 None:intergenic 25.0%
! TCTTATTGTCCACAAATTAA+AGG + chr2_4:44493967-44493986 None:intergenic 25.0%
!!! GTTTTTTTGACTTTGTTCAA+TGG + chr2_4:44494727-44494746 None:intergenic 25.0%
!!! TCTACTTATTTTCTCCTTTT+TGG - chr2_4:44495366-44495385 Msa0330270:intron 25.0%
!!! CTACTTATTTTCTCCTTTTT+GGG - chr2_4:44495367-44495386 Msa0330270:intron 25.0%
!!! TACTTATTTTCTCCTTTTTG+GGG - chr2_4:44495368-44495387 Msa0330270:intron 25.0%
! TAAAAAGTAATCAATCTTCG+TGG - chr2_4:44495391-44495410 Msa0330270:intron 25.0%
! AAAAAGTAATCAATCTTCGT+GGG - chr2_4:44495392-44495411 Msa0330270:intron 25.0%
!! CAGATTTAAAATTATCCCAA+CGG - chr2_4:44495544-44495563 Msa0330270:intron 25.0%
! AAAACAAAGAAGAGAATTAG+AGG - chr2_4:44495651-44495670 Msa0330270:intron 25.0%
! AAACAAAGAAGAGAATTAGA+GGG - chr2_4:44495652-44495671 Msa0330270:intron 25.0%
! ATTTATGTTAGATACAACCT+AGG + chr2_4:44495747-44495766 None:intergenic 25.0%
! TCAAAAAAAATGTGTGAAAG+TGG - chr2_4:44495771-44495790 Msa0330270:intron 25.0%
!! GCATTTTAGACTTTTACTTT+GGG - chr2_4:44496002-44496021 Msa0330270:intron 25.0%
!!! ATTTTGGAAGTATTAGTAAG+GGG + chr2_4:44496142-44496161 None:intergenic 25.0%
!!! CATTTTGGAAGTATTAGTAA+GGG + chr2_4:44496143-44496162 None:intergenic 25.0%
!!! ACATTTTGGAAGTATTAGTA+AGG + chr2_4:44496144-44496163 None:intergenic 25.0%
!! ACGAAATAGAAATGACATTT+TGG + chr2_4:44496158-44496177 None:intergenic 25.0%
TAAATTTGGTAGAAAGAGAG+AGG + chr2_4:44488887-44488906 None:intergenic 30.0%
ATAGGAAAAGAACCTTCTTT+GGG + chr2_4:44489080-44489099 None:intergenic 30.0%
AATAGGAAAAGAACCTTCTT+TGG + chr2_4:44489081-44489100 None:intergenic 30.0%
! GCATTTTATAGCTGTTAGAT+TGG - chr2_4:44489151-44489170 Msa0330270:intron 30.0%
AGTAGTTTATTTATTCCACC+CGG - chr2_4:44489201-44489220 Msa0330270:intron 30.0%
AATGGCTATGATACACTATT+TGG + chr2_4:44489276-44489295 None:intergenic 30.0%
! CTAATTTGAGTGTTTCTGAT+TGG - chr2_4:44489491-44489510 Msa0330270:intron 30.0%
GAGCATAACACAATTAAAGT+TGG - chr2_4:44489780-44489799 Msa0330270:intron 30.0%
GTTACTGGAATTCATTTCAT+TGG - chr2_4:44489818-44489837 Msa0330270:intron 30.0%
!!! GTCCTAAGTTTCTTATTTTC+TGG - chr2_4:44489863-44489882 Msa0330270:intron 30.0%
TAAATTTGACAACATAGAGC+AGG - chr2_4:44490053-44490072 Msa0330270:intron 30.0%
! AATCATTTTCACTGGATTCA+CGG + chr2_4:44490412-44490431 None:intergenic 30.0%
CAAAATCTTGGTCAGTTTAA+AGG - chr2_4:44490536-44490555 Msa0330270:intron 30.0%
ATGAATATGCTTTCTATCCT+TGG - chr2_4:44490632-44490651 Msa0330270:intron 30.0%
AATCAGAGATTAAGAAACCA+AGG + chr2_4:44490652-44490671 None:intergenic 30.0%
TAACAAAAGTGATTGGAGAA+GGG - chr2_4:44490768-44490787 Msa0330270:intron 30.0%
AGCAATTCAAGGAAAAAAAG+TGG + chr2_4:44490870-44490889 None:intergenic 30.0%
ATATTCAGTATTGTCAATCG+CGG + chr2_4:44491090-44491109 None:intergenic 30.0%
ATTAACATGTTGCTAAGAAG+AGG - chr2_4:44491125-44491144 Msa0330270:intron 30.0%
! TATTCATCAAAGCCTCTTTT+TGG + chr2_4:44491163-44491182 None:intergenic 30.0%
GAAACAACTGAAAAATAGCT+TGG - chr2_4:44491848-44491867 Msa0330270:intron 30.0%
GACTGTTACAATGTAAAACA+TGG - chr2_4:44491932-44491951 Msa0330270:intron 30.0%
TCTTACACAGACGATATATA+AGG + chr2_4:44491967-44491986 None:intergenic 30.0%
! GGAGTTATTTGTTGATAAGT+TGG - chr2_4:44492108-44492127 Msa0330270:intron 30.0%
AAACTAGAATATATGGGCAA+GGG + chr2_4:44492304-44492323 None:intergenic 30.0%
AAAACTAGAATATATGGGCA+AGG + chr2_4:44492305-44492324 None:intergenic 30.0%
ATTCCATTTATAGCGTTGTT+CGG - chr2_4:44492334-44492353 Msa0330270:CDS 30.0%
AACTTAATTATAGCCCTGTT+TGG + chr2_4:44492594-44492613 None:intergenic 30.0%
ACAGGGCTATAATTAAGTTA+AGG - chr2_4:44492595-44492614 Msa0330270:intron 30.0%
TTAATCTTCCATATAGGAGT+AGG - chr2_4:44492633-44492652 Msa0330270:intron 30.0%
! TGCTTTTACACCACAATAAA+TGG + chr2_4:44492660-44492679 None:intergenic 30.0%
TTTATTGTGGTGTAAAAGCA+AGG - chr2_4:44492660-44492679 Msa0330270:intron 30.0%
TATGTTCAGATTCCAGTTAA+AGG - chr2_4:44492707-44492726 Msa0330270:intron 30.0%
TTAATTGAGAAGCCTTTAAC+TGG + chr2_4:44492722-44492741 None:intergenic 30.0%
! AGAGAGTATAATTGCTCAAA+CGG - chr2_4:44493070-44493089 Msa0330270:intron 30.0%
TTATTCAATGTAACGTCTGA+GGG + chr2_4:44493107-44493126 None:intergenic 30.0%
TTTATTCAATGTAACGTCTG+AGG + chr2_4:44493108-44493127 None:intergenic 30.0%
AGACGTTACATTGAATAAAG+TGG - chr2_4:44493109-44493128 Msa0330270:intron 30.0%
!!! CTGCATTTGGTTATTTTTTC+AGG - chr2_4:44493287-44493306 Msa0330270:intron 30.0%
TTTATGAAGGATGAAGATAG+TGG + chr2_4:44493442-44493461 None:intergenic 30.0%
TAATAGTGGTCAATAAGCAT+AGG + chr2_4:44493651-44493670 None:intergenic 30.0%
!! GCTTTCTGATTTGATGATTT+TGG + chr2_4:44493695-44493714 None:intergenic 30.0%
AATCATCAAATCAGAAAGCA+AGG - chr2_4:44493696-44493715 Msa0330270:intron 30.0%
TAAGAAGAGAGTAAGGAAAA+TGG - chr2_4:44493765-44493784 Msa0330270:intron 30.0%
AGGAAAATGGCTAAGAAAAT+AGG - chr2_4:44493778-44493797 Msa0330270:intron 30.0%
GGAAAATGGCTAAGAAAATA+GGG - chr2_4:44493779-44493798 Msa0330270:intron 30.0%
GAAAATGGCTAAGAAAATAG+GGG - chr2_4:44493780-44493799 Msa0330270:intron 30.0%
GTTATTTAGAAGATGTTTGG+TGG - chr2_4:44493871-44493890 Msa0330270:intron 30.0%
TACTAAAGCACATATCCAAT+GGG + chr2_4:44493901-44493920 None:intergenic 30.0%
TTACTAAAGCACATATCCAA+TGG + chr2_4:44493902-44493921 None:intergenic 30.0%
GCAAAATTATTGTGCTTCAA+GGG - chr2_4:44494014-44494033 Msa0330270:intron 30.0%
!! ATAAGCAAATTTGATAACGG+TGG - chr2_4:44494217-44494236 Msa0330270:intron 30.0%
AGTCGTAATTGTTAAGAGAA+AGG - chr2_4:44494248-44494267 Msa0330270:intron 30.0%
AAAAACCAACCTATAAGTGA+TGG - chr2_4:44494303-44494322 Msa0330270:intron 30.0%
!! TGTGTTGTTTGATGAAAATG+AGG + chr2_4:44494515-44494534 None:intergenic 30.0%
!!! GTTGAAGGAATTTTGAAGTT+GGG + chr2_4:44494565-44494584 None:intergenic 30.0%
!!! AGTTGAAGGAATTTTGAAGT+TGG + chr2_4:44494566-44494585 None:intergenic 30.0%
!! GTTGTTTGATTTGAAGTTGA+AGG + chr2_4:44494580-44494599 None:intergenic 30.0%
!!! GATTACTTTTTACCCCAAAA+AGG + chr2_4:44495383-44495402 None:intergenic 30.0%
AAAAGTAATCAATCTTCGTG+GGG - chr2_4:44495393-44495412 Msa0330270:intron 30.0%
AAAATACATCATCAACCCTT+GGG - chr2_4:44495442-44495461 Msa0330270:intron 30.0%
AAAAAGGGATCAAAATTCGT+CGG + chr2_4:44495607-44495626 None:intergenic 30.0%
!! TATTCTCTTTGGGGTAAAAA+GGG + chr2_4:44495622-44495641 None:intergenic 30.0%
!! ATATTCTCTTTGGGGTAAAA+AGG + chr2_4:44495623-44495642 None:intergenic 30.0%
!! AAGTATGTGAGGGTATTTAT+AGG - chr2_4:44495709-44495728 Msa0330270:intron 30.0%
GGTTGTATCTAACATAAATG+TGG - chr2_4:44495748-44495767 Msa0330270:intron 30.0%
! AACAAACGTTTTTCCAACTT+TGG + chr2_4:44495831-44495850 None:intergenic 30.0%
! GGCATTTTAGACTTTTACTT+TGG - chr2_4:44496001-44496020 Msa0330270:intron 30.0%
TTCCTAAGTGATGAGATTAT+GGG - chr2_4:44496056-44496075 Msa0330270:CDS 30.0%
!!! TTTTGGAAGTATTAGTAAGG+GGG + chr2_4:44496141-44496160 None:intergenic 30.0%
! TTTGAAATGGTTGCAGTTTC+AGG - chr2_4:44488971-44488990 Msa0330270:intron 35.0%
TAGATTGGTATTGTCAATCG+CGG - chr2_4:44489166-44489185 Msa0330270:intron 35.0%
GTGCTATATAGATTATTGCC+GGG + chr2_4:44489222-44489241 None:intergenic 35.0%
! GGTGCTATATAGATTATTGC+CGG + chr2_4:44489223-44489242 None:intergenic 35.0%
!!! CACTATTTTTTGTGTGAACC+AGG + chr2_4:44489351-44489370 None:intergenic 35.0%
TCTAGAGAGAAAACTGAAGA+TGG - chr2_4:44489889-44489908 Msa0330270:intron 35.0%
CTAGAGAGAAAACTGAAGAT+GGG - chr2_4:44489890-44489909 Msa0330270:intron 35.0%
! GTTGCTTCCATTTTCAACAT+CGG - chr2_4:44490170-44490189 Msa0330270:intron 35.0%
TTGCATATAGAATTCATGCC+TGG + chr2_4:44490321-44490340 None:intergenic 35.0%
TATTGGAAGAGTTGAATGGT+TGG - chr2_4:44490475-44490494 Msa0330270:intron 35.0%
GAGAAATTGTGGTCATTGAT+AGG - chr2_4:44490503-44490522 Msa0330270:intron 35.0%
! GAAAGCATATTCATACCAAG+TGG + chr2_4:44490626-44490645 None:intergenic 35.0%
GTAACAAAAGTGATTGGAGA+AGG - chr2_4:44490767-44490786 Msa0330270:intron 35.0%
AAGCTTATTGGCATAGCAAT+CGG + chr2_4:44490807-44490826 None:intergenic 35.0%
GTAGTACCTAACAAGCTTAT+TGG + chr2_4:44490819-44490838 None:intergenic 35.0%
!! TTGTCGGTGTTGTTAAATAG+TGG - chr2_4:44490913-44490932 Msa0330270:intron 35.0%
ATACTGTCAAATAGAAGCTG+TGG - chr2_4:44491008-44491027 Msa0330270:intron 35.0%
ATACAACAACAATCAAGCTG+TGG + chr2_4:44491450-44491469 None:intergenic 35.0%
! TGATGTTTTACACTCACCTA+TGG - chr2_4:44491499-44491518 Msa0330270:intron 35.0%
AAACCATTTCATCTCATGCT+TGG - chr2_4:44491722-44491741 Msa0330270:intron 35.0%
AAACCAAGCATGAGATGAAA+TGG + chr2_4:44491728-44491747 None:intergenic 35.0%
! TTTCATCTCATGCTTGGTTT+TGG - chr2_4:44491728-44491747 Msa0330270:intron 35.0%
CTTCTTGGATTACTCACAAT+GGG + chr2_4:44492011-44492030 None:intergenic 35.0%
! CAAATAAGAGTTTAGGACAG+TGG - chr2_4:44492077-44492096 Msa0330270:intron 35.0%
AATCCGAACAACGCTATAAA+TGG + chr2_4:44492340-44492359 None:intergenic 35.0%
TAAATGGTCCTACTCCTATA+TGG + chr2_4:44492644-44492663 None:intergenic 35.0%
ACAAATACCTTGCAGTAGAA+CGG + chr2_4:44492793-44492812 None:intergenic 35.0%
TAGTCAGTTTCCATTGCTTA+CGG - chr2_4:44492857-44492876 Msa0330270:intron 35.0%
! GAGAGTATAATTGCTCAAAC+GGG - chr2_4:44493071-44493090 Msa0330270:intron 35.0%
! TAATGGTGTGTTTTTCCGTA+TGG + chr2_4:44493374-44493393 None:intergenic 35.0%
GTGAGAACCAAAACTTGAAA+TGG - chr2_4:44493550-44493569 Msa0330270:intron 35.0%
!!! TTGCAAGCCATTTCAAGTTT+TGG + chr2_4:44493560-44493579 None:intergenic 35.0%
CAACTTTCTGACAGCAAATA+AGG - chr2_4:44493577-44493596 Msa0330270:intron 35.0%
ATCAAATCAGAAAGCAAGGA+AGG - chr2_4:44493700-44493719 Msa0330270:intron 35.0%
TTTGTGACACAACAAAAGTG+AGG - chr2_4:44493734-44493753 Msa0330270:intron 35.0%
TTGTGACACAACAAAAGTGA+GGG - chr2_4:44493735-44493754 Msa0330270:intron 35.0%
AGGAAGATAAGAAGAGAGTA+AGG - chr2_4:44493758-44493777 Msa0330270:intron 35.0%
TAAGAAAATAGGGGACCATA+TGG - chr2_4:44493789-44493808 Msa0330270:intron 35.0%
!!! CAAGTAAACCTTTTGGTTTC+TGG + chr2_4:44493852-44493871 None:intergenic 35.0%
ACTAAAGCACATATCCAATG+GGG + chr2_4:44493900-44493919 None:intergenic 35.0%
AGGGGAAGAAGAAAATTACT+TGG + chr2_4:44493947-44493966 None:intergenic 35.0%
!! TCTTCTTCCCCTTTAATTTG+TGG - chr2_4:44493955-44493974 Msa0330270:intron 35.0%
CGCAAAATTATTGTGCTTCA+AGG - chr2_4:44494013-44494032 Msa0330270:intron 35.0%
GCTCATGAATTCAAAGAAAC+CGG - chr2_4:44494272-44494291 Msa0330270:intron 35.0%
ATGAATTCAAAGAAACCGGA+TGG - chr2_4:44494276-44494295 Msa0330270:intron 35.0%
TGAATTCAAAGAAACCGGAT+GGG - chr2_4:44494277-44494296 Msa0330270:intron 35.0%
! ATGATGTATTTTCCCCAAGA+AGG + chr2_4:44495434-44495453 None:intergenic 35.0%
GAAAATACATCATCAACCCT+TGG - chr2_4:44495441-44495460 Msa0330270:intron 35.0%
CAGACTTAAATTTAGCCCAA+GGG + chr2_4:44495460-44495479 None:intergenic 35.0%
TGGGTAAAAAGAACTTCTTG+TGG + chr2_4:44495496-44495515 None:intergenic 35.0%
! CAAGAAGTTCTTTTTACCCA+CGG - chr2_4:44495496-44495515 Msa0330270:intron 35.0%
AAAAGGGATCAAAATTCGTC+GGG + chr2_4:44495606-44495625 None:intergenic 35.0%
AGGAGATAATGTGAGGAATA+TGG - chr2_4:44495685-44495704 Msa0330270:intron 35.0%
GGAGATAATGTGAGGAATAT+GGG - chr2_4:44495686-44495705 Msa0330270:intron 35.0%
ATAGGTAGAAATGTGAACCT+AGG - chr2_4:44495727-44495746 Msa0330270:intron 35.0%
GAAAAACGTTTGTTCTTCAC+CGG - chr2_4:44495837-44495856 Msa0330270:intron 35.0%
GTTCCTAAGTGATGAGATTA+TGG - chr2_4:44496055-44496074 Msa0330270:CDS 35.0%
ATCCCATAATCTCATCACTT+AGG + chr2_4:44496061-44496080 None:intergenic 35.0%
TAAGTGATGAGATTATGGGA+TGG - chr2_4:44496060-44496079 Msa0330270:CDS 35.0%
AAGTGATGAGATTATGGGAT+GGG - chr2_4:44496061-44496080 Msa0330270:CDS 35.0%
TTAGTAAGGGGGAACAAATT+CGG + chr2_4:44496130-44496149 None:intergenic 35.0%
!! TGTCTTTAAGGTTGCTGTGT+TGG - chr2_4:44488835-44488854 Msa0330270:intron 40.0%
!! GTCTTTAAGGTTGCTGTGTT+GGG - chr2_4:44488836-44488855 Msa0330270:intron 40.0%
GCATCAACTCTTGCTAGAAA+TGG - chr2_4:44489004-44489023 Msa0330270:intron 40.0%
AGATTGGTATTGTCAATCGC+GGG - chr2_4:44489167-44489186 Msa0330270:intron 40.0%
CTATATAGATTATTGCCGGG+TGG + chr2_4:44489219-44489238 None:intergenic 40.0%
ATCTTGTGAAAGACCTTCCA+AGG + chr2_4:44489548-44489567 None:intergenic 40.0%
CACAAGATTTATGTCTCTGC+TGG - chr2_4:44489560-44489579 Msa0330270:intron 40.0%
TATTTCCGTCCGAATGTTAC+TGG - chr2_4:44489803-44489822 Msa0330270:intron 40.0%
GAATTCCAGTAACATTCGGA+CGG + chr2_4:44489811-44489830 None:intergenic 40.0%
AGAGAAAACTGAAGATGGGA+AGG - chr2_4:44489894-44489913 Msa0330270:intron 40.0%
TAGTTCAAGAATAGGAGTCG+AGG - chr2_4:44489977-44489996 Msa0330270:intron 40.0%
AGTTCAAGAATAGGAGTCGA+GGG - chr2_4:44489978-44489997 Msa0330270:intron 40.0%
GCTGAATGGAGAGAAAAGTT+TGG - chr2_4:44490009-44490028 Msa0330270:intron 40.0%
TGCATAGCCGATGTTGAAAA+TGG + chr2_4:44490180-44490199 None:intergenic 40.0%
AATCTGATCCTGAATGCACT+AGG + chr2_4:44490229-44490248 None:intergenic 40.0%
!! CTATGACTGGCGTACTTTTT+AGG - chr2_4:44490266-44490285 Msa0330270:intron 40.0%
AGGACTAAGCAAGAGATTTG+TGG - chr2_4:44490290-44490309 Msa0330270:intron 40.0%
GGACTAAGCAAGAGATTTGT+GGG - chr2_4:44490291-44490310 Msa0330270:intron 40.0%
! AAAGCATTATGCAACGAGAG+TGG - chr2_4:44490339-44490358 Msa0330270:intron 40.0%
TTAGGTGTGGAAAGCAAGTT+TGG - chr2_4:44490446-44490465 Msa0330270:intron 40.0%
!! TGGGTATTGGAAGAGTTGAA+TGG - chr2_4:44490471-44490490 Msa0330270:intron 40.0%
GGTTGGATGATGAGAAATTG+TGG - chr2_4:44490492-44490511 Msa0330270:intron 40.0%
ATTGTGGTCATTGATAGGTG+TGG - chr2_4:44490508-44490527 Msa0330270:intron 40.0%
AGCATATTCATACCAAGTGG+TGG + chr2_4:44490623-44490642 None:intergenic 40.0%
! GCTATGCCAATAAGCTTGTT+AGG - chr2_4:44490810-44490829 Msa0330270:intron 40.0%
GCGATATAGAGTAGCAAAGT+TGG - chr2_4:44490944-44490963 Msa0330270:intron 40.0%
CAATAATATAGCGTCGCTAC+AGG + chr2_4:44491034-44491053 None:intergenic 40.0%
TGTTGCTAAGAAGAGGATAC+CGG - chr2_4:44491132-44491151 Msa0330270:intron 40.0%
ACTCACCTATGGAATTTGTG+AGG - chr2_4:44491510-44491529 Msa0330270:intron 40.0%
TGCATCCTCACAAATTCCAT+AGG + chr2_4:44491518-44491537 None:intergenic 40.0%
! TGCAACTTTTCTGACAACTG+AGG + chr2_4:44491556-44491575 None:intergenic 40.0%
ATTTGCAGAGCCTTTGTCAA+CGG - chr2_4:44491615-44491634 Msa0330270:intron 40.0%
CTTCATCATACCGTTGACAA+AGG + chr2_4:44491628-44491647 None:intergenic 40.0%
GCTAATGTGTGAGCTTTACA+TGG - chr2_4:44491685-44491704 Msa0330270:intron 40.0%
CAACTGAAAAATAGCTTGGC+AGG - chr2_4:44491852-44491871 Msa0330270:intron 40.0%
CCTTCTTGGATTACTCACAA+TGG + chr2_4:44492012-44492031 None:intergenic 40.0%
CCATTGTGAGTAATCCAAGA+AGG - chr2_4:44492009-44492028 Msa0330270:intron 40.0%
! ACTTTTGTCTCATGCCTTCT+TGG + chr2_4:44492026-44492045 None:intergenic 40.0%
! ATAAGAGTTTAGGACAGTGG+AGG - chr2_4:44492080-44492099 Msa0330270:intron 40.0%
! TAAGAGTTTAGGACAGTGGA+GGG - chr2_4:44492081-44492100 Msa0330270:intron 40.0%
ACTCTCTAACTCCTAGAAGT+TGG - chr2_4:44492145-44492164 Msa0330270:intron 40.0%
CTCTCTAACTCCTAGAAGTT+GGG - chr2_4:44492146-44492165 Msa0330270:intron 40.0%
CAGTAACTAACCCAACTTCT+AGG + chr2_4:44492159-44492178 None:intergenic 40.0%
!! CTAGAAGTTGGGTTAGTTAC+TGG - chr2_4:44492157-44492176 Msa0330270:intron 40.0%
CAGAATAACTTCTGCAGAGT+TGG + chr2_4:44492234-44492253 None:intergenic 40.0%
AGGAGTAGGACCATTTATTG+TGG - chr2_4:44492647-44492666 Msa0330270:intron 40.0%
AAAGGTTTCCGTTGCTTACA+AGG - chr2_4:44492992-44493011 Msa0330270:intron 40.0%
AGATGCAACCTTGTAAGCAA+CGG + chr2_4:44493003-44493022 None:intergenic 40.0%
CACTTTCTCACCCAACTATA+TGG - chr2_4:44493511-44493530 Msa0330270:CDS 40.0%
!! GAGATGATGGAAGGTAAAAG+TGG - chr2_4:44493824-44493843 Msa0330270:intron 40.0%
CAACAGTAGTAGTGAACTGA+TGG + chr2_4:44494082-44494101 None:intergenic 40.0%
GAATTCAAAGAAACCGGATG+GGG - chr2_4:44494278-44494297 Msa0330270:intron 40.0%
GGATTCCATCACTTATAGGT+TGG + chr2_4:44494311-44494330 None:intergenic 40.0%
AGCAGGATTCCATCACTTAT+AGG + chr2_4:44494315-44494334 None:intergenic 40.0%
AAACTGTTTGGGTAAAGAGC+AGG + chr2_4:44494332-44494351 None:intergenic 40.0%
GGGAGTGAGTAAAACTGTTT+GGG + chr2_4:44494343-44494362 None:intergenic 40.0%
TGGGAGTGAGTAAAACTGTT+TGG + chr2_4:44494344-44494363 None:intergenic 40.0%
AACGCATGTTAACATGCGTA+GGG + chr2_4:44494386-44494405 None:intergenic 40.0%
TAACGCATGTTAACATGCGT+AGG + chr2_4:44494387-44494406 None:intergenic 40.0%
CTACGTGATGTTATTAACCC+AGG - chr2_4:44494474-44494493 Msa0330270:intron 40.0%
GATGAAAATGAGGCAGAATG+AGG + chr2_4:44494505-44494524 None:intergenic 40.0%
AAAAACGTGTTCTTGAGTCC+AGG - chr2_4:44494741-44494760 Msa0330270:intron 40.0%
ACTCACACTAGTGTAAATCC+TGG + chr2_4:44494762-44494781 None:intergenic 40.0%
GTTACGCTAGTGTAAATCCT+GGG + chr2_4:44494794-44494813 None:intergenic 40.0%
TGTTACGCTAGTGTAAATCC+TGG + chr2_4:44494795-44494814 None:intergenic 40.0%
GATTTACACTAGCGTAACAC+TGG - chr2_4:44494796-44494815 Msa0330270:CDS 40.0%
AAAATAGTGAGCAGCCTTCT+TGG - chr2_4:44495417-44495436 Msa0330270:intron 40.0%
AAATAGTGAGCAGCCTTCTT+GGG - chr2_4:44495418-44495437 Msa0330270:intron 40.0%
CCAGACTTAAATTTAGCCCA+AGG + chr2_4:44495461-44495480 None:intergenic 40.0%
CCTTGGGCTAAATTTAAGTC+TGG - chr2_4:44495458-44495477 Msa0330270:intron 40.0%
! AGGAATATGGGAAGTATGTG+AGG - chr2_4:44495698-44495717 Msa0330270:intron 40.0%
! GGAATATGGGAAGTATGTGA+GGG - chr2_4:44495699-44495718 Msa0330270:intron 40.0%
GTTGAAAAGCTGACCAAAGT+TGG - chr2_4:44495815-44495834 Msa0330270:intron 40.0%
AGTGATGAGATTATGGGATG+GGG - chr2_4:44496062-44496081 Msa0330270:CDS 40.0%
GATGGGGAGATGTAAGTATT+TGG - chr2_4:44496078-44496097 Msa0330270:CDS 40.0%
CACAGCAACCTTAAAGACAG+TGG + chr2_4:44488834-44488853 None:intergenic 45.0%
! TTTAAGGTTGCTGTGTTGGG+TGG - chr2_4:44488839-44488858 Msa0330270:intron 45.0%
ACACTCTTTGAGTCTGCTAG+AGG - chr2_4:44489037-44489056 Msa0330270:intron 45.0%
ATAGCCATTGTAGTCCTACC+CGG - chr2_4:44489287-44489306 Msa0330270:intron 45.0%
TGTACTCATCATGGGAACCT+TGG - chr2_4:44489528-44489547 Msa0330270:intron 45.0%
!! AAGGAGCTGCATTTTGACCA+TGG - chr2_4:44489913-44489932 Msa0330270:intron 45.0%
!! GGCTTGCTAACCGAGAAAAA+CGG + chr2_4:44489943-44489962 None:intergenic 45.0%
! GGCTCGTCTAGTTCAAGAAT+AGG - chr2_4:44489969-44489988 Msa0330270:intron 45.0%
GTTCAAGAATAGGAGTCGAG+GGG - chr2_4:44489979-44489998 Msa0330270:intron 45.0%
! ACATCGGCTATGCATGTACA+AGG - chr2_4:44490186-44490205 Msa0330270:intron 45.0%
TGACAAAGCCTAGTGCATTC+AGG - chr2_4:44490218-44490237 Msa0330270:intron 45.0%
!! GACTGGCGTACTTTTTAGGA+AGG - chr2_4:44490270-44490289 Msa0330270:intron 45.0%
AAGAGATTTGTGGGTGTTCC+AGG - chr2_4:44490300-44490319 Msa0330270:intron 45.0%
! TGTGGAAAGCAAGTTTGGTG+TGG - chr2_4:44490451-44490470 Msa0330270:intron 45.0%
!! GTGGAAAGCAAGTTTGGTGT+GGG - chr2_4:44490452-44490471 Msa0330270:intron 45.0%
!! AGCAAGTTTGGTGTGGGTAT+TGG - chr2_4:44490458-44490477 Msa0330270:intron 45.0%
TGGTCATTGATAGGTGTGGA+TGG - chr2_4:44490512-44490531 Msa0330270:intron 45.0%
GGTGTGGATGGACAAAATCT+TGG - chr2_4:44490524-44490543 Msa0330270:intron 45.0%
ACTAGGATTGCAGATGTCAC+AGG - chr2_4:44490590-44490609 Msa0330270:intron 45.0%
ATACCGGTGAAGCCAAAAAG+AGG - chr2_4:44491148-44491167 Msa0330270:intron 45.0%
!!! AAGCCTCTTTTTGGCTTCAC+CGG + chr2_4:44491154-44491173 None:intergenic 45.0%
CAATCAAGCTGTGGTCAGTA+TGG + chr2_4:44491441-44491460 None:intergenic 45.0%
AGTTGCACAACCTTCCTGTT+AGG - chr2_4:44491569-44491588 Msa0330270:intron 45.0%
GCTTGGCAGGAATAAGTTTG+TGG - chr2_4:44491865-44491884 Msa0330270:intron 45.0%
CTTGGATTACTCACAATGGG+AGG + chr2_4:44492008-44492027 None:intergenic 45.0%
! TTTAGGACAGTGGAGGGAAT+TGG - chr2_4:44492087-44492106 Msa0330270:intron 45.0%
CAGAGTTGGCTACAAGAACT+AGG + chr2_4:44492220-44492239 None:intergenic 45.0%
! TTTTCCGGACAGTCTCACAA+GGG + chr2_4:44492393-44492412 None:intergenic 45.0%
! TTTTTCCGGACAGTCTCACA+AGG + chr2_4:44492394-44492413 None:intergenic 45.0%
TCCATTGCTTACGGTCTATG+AGG - chr2_4:44492866-44492885 Msa0330270:intron 45.0%
ACCTCATAGACCGTAAGCAA+TGG + chr2_4:44492870-44492889 None:intergenic 45.0%
! TCTATGAGGTGTCAACTCAG+TGG - chr2_4:44492880-44492899 Msa0330270:intron 45.0%
ACACTCGTTGCAATGCCATA+CGG - chr2_4:44493356-44493375 Msa0330270:intron 45.0%
CAGAAAGCAAGGAAGGAAAG+AGG - chr2_4:44493707-44493726 Msa0330270:intron 45.0%
TGACACAACAAAAGTGAGGG+AGG - chr2_4:44493738-44493757 Msa0330270:intron 45.0%
GAAAATAGGGGACCATATGG+AGG - chr2_4:44493792-44493811 Msa0330270:intron 45.0%
AAGTGGCACCAGAAACCAAA+AGG - chr2_4:44493841-44493860 Msa0330270:intron 45.0%
!!! GGTTGGTTTTTTTCCCCATC+CGG + chr2_4:44494294-44494313 None:intergenic 45.0%
ACGCATGTTAACATGCGTAG+GGG + chr2_4:44494385-44494404 None:intergenic 45.0%
AATAGTGAGCAGCCTTCTTG+GGG - chr2_4:44495419-44495438 Msa0330270:intron 45.0%
! CCGCAGAAACTTTTTACCGT+GGG + chr2_4:44495515-44495534 None:intergenic 45.0%
CCCACGGTAAAAAGTTTCTG+CGG - chr2_4:44495512-44495531 Msa0330270:intron 45.0%
! ACCGCAGAAACTTTTTACCG+TGG + chr2_4:44495516-44495535 None:intergenic 45.0%
! AAATAGTGAGCAGCCGACTT+GGG + chr2_4:44495581-44495600 None:intergenic 45.0%
AAAATAGTGAGCAGCCGACT+TGG + chr2_4:44495582-44495601 None:intergenic 45.0%
AGAGAATTAGAGGGAGAGAG+TGG - chr2_4:44495661-44495680 Msa0330270:intron 45.0%
GAGAATTAGAGGGAGAGAGT+GGG - chr2_4:44495662-44495681 Msa0330270:intron 45.0%
GCAAGTTAACTCACGCTAGT+TGG + chr2_4:44495863-44495882 None:intergenic 45.0%
! TAACTTGCGCTAGTGCTAAG+TGG - chr2_4:44495875-44495894 Msa0330270:intron 45.0%
! TAGCGCAAGTTAAGTTGCGT+AGG - chr2_4:44495978-44495997 Msa0330270:intron 45.0%
! AGCGCAAGTTAAGTTGCGTA+GGG - chr2_4:44495979-44495998 Msa0330270:intron 45.0%
GAACCTGCTCTTTACCCAAA+CGG + chr2_4:44496039-44496058 None:intergenic 45.0%
!! AATAAAAAAAATGATAAATT+TGG + chr2_4:44488901-44488920 None:intergenic 5.0%
!!! TTTTATTATTTTATTCTTTT+TGG - chr2_4:44488914-44488933 Msa0330270:intron 5.0%
!!! AATAAATTAATTTAGAATAT+AGG + chr2_4:44494959-44494978 None:intergenic 5.0%
CTCATCATGGGAACCTTGGA+AGG - chr2_4:44489532-44489551 Msa0330270:intron 50.0%
!! CCATGGTGCTCCGTTTTTCT+CGG - chr2_4:44489930-44489949 Msa0330270:intron 50.0%
TGAACTAGACGAGCCACTTC+AGG + chr2_4:44489964-44489983 None:intergenic 50.0%
GGCTATGCATGTACAAGGCA+TGG - chr2_4:44490191-44490210 Msa0330270:intron 50.0%
GGATTGCAGATGTCACAGGA+CGG - chr2_4:44490594-44490613 Msa0330270:intron 50.0%
CGAAACATGGCCTAACAGGA+AGG + chr2_4:44491582-44491601 None:intergenic 50.0%
ACTGCGAAACATGGCCTAAC+AGG + chr2_4:44491586-44491605 None:intergenic 50.0%
GCCATGTTTCGCAGTTATGC+TGG - chr2_4:44491591-44491610 Msa0330270:intron 50.0%
GCCAGCATAACTGCGAAACA+TGG + chr2_4:44491595-44491614 None:intergenic 50.0%
TAAGCCCTTGTGAGACTGTC+CGG - chr2_4:44492386-44492405 Msa0330270:intron 50.0%
GTTGGGCTTACTGTGATAGC+AGG - chr2_4:44492759-44492778 Msa0330270:intron 50.0%
TACTGTGATAGCAGGAAGCC+AGG - chr2_4:44492767-44492786 Msa0330270:intron 50.0%
! ATGTTTGGTGGACACCCCAT+TGG - chr2_4:44493883-44493902 Msa0330270:intron 50.0%
!! AATAGTGAGCAGCCGACTTG+GGG + chr2_4:44495580-44495599 None:intergenic 50.0%
AATTAGAGGGAGAGAGTGGG+AGG - chr2_4:44495665-44495684 Msa0330270:intron 50.0%
GAGTGGGAGGAGATAATGTG+AGG - chr2_4:44495678-44495697 Msa0330270:intron 50.0%
GTTAACTCACGCTAGTTGGC+CGG + chr2_4:44495859-44495878 None:intergenic 50.0%
! GCGCAAGTTAAGTTGCGTAG+GGG - chr2_4:44495980-44495999 Msa0330270:intron 50.0%
TGGGAATGAGCAGAACCGTT+TGG - chr2_4:44496021-44496040 Msa0330270:CDS 50.0%
GGGAATGAGCAGAACCGTTT+GGG - chr2_4:44496022-44496041 Msa0330270:CDS 50.0%
GAACCGTTTGGGTAAAGAGC+AGG - chr2_4:44496033-44496052 Msa0330270:CDS 50.0%
AAGGTTGCTGTGTTGGGTGG+TGG - chr2_4:44488842-44488861 Msa0330270:intron 55.0%
TTTGAGTCTGCTAGAGGCCC+TGG - chr2_4:44489043-44489062 Msa0330270:intron 55.0%
! TTTGGGACATGCGTCCACCA+GGG + chr2_4:44489063-44489082 None:intergenic 55.0%
GTGGACGCATGTCCCAAAGA+AGG - chr2_4:44489065-44489084 Msa0330270:intron 55.0%
AGAGGTTAATCCCTCCAGCC+GGG + chr2_4:44489308-44489327 None:intergenic 55.0%
CAGAGGTTAATCCCTCCAGC+CGG + chr2_4:44489309-44489328 None:intergenic 55.0%
! CCGAGAAAAACGGAGCACCA+TGG + chr2_4:44489933-44489952 None:intergenic 55.0%
CTCGGTTAGCAAGCCTGAAG+TGG - chr2_4:44489948-44489967 Msa0330270:intron 55.0%
TACCTTGCAGTAGAACGGCC+TGG + chr2_4:44492788-44492807 None:intergenic 55.0%
GGCAGAATGAGGTTCTGCCT+GGG + chr2_4:44494494-44494513 None:intergenic 55.0%
AGGCAGAATGAGGTTCTGCC+TGG + chr2_4:44494495-44494514 None:intergenic 55.0%
GTGTGAGTTAACTCACGCCC+AGG - chr2_4:44494774-44494793 Msa0330270:CDS 55.0%
TGGGGAAGTGATCGACCGTT+GGG + chr2_4:44495562-44495581 None:intergenic 55.0%
TTGGGGAAGTGATCGACCGT+TGG + chr2_4:44495563-44495582 None:intergenic 55.0%
GGTCGATCACTTCCCCAAGT+CGG - chr2_4:44495565-44495584 Msa0330270:intron 55.0%
!! CTTTGGGACATGCGTCCACC+AGG + chr2_4:44489064-44489083 None:intergenic 60.0%
CCAGCCGGGTAGGACTACAA+TGG + chr2_4:44489294-44489313 None:intergenic 60.0%
CCATTGTAGTCCTACCCGGC+TGG - chr2_4:44489291-44489310 Msa0330270:intron 60.0%
TTGTAGTCCTACCCGGCTGG+AGG - chr2_4:44489294-44489313 Msa0330270:intron 60.0%
TGTAGTCCTACCCGGCTGGA+GGG - chr2_4:44489295-44489314 Msa0330270:intron 60.0%
GTTAATCCCTCCAGCCGGGT+AGG + chr2_4:44489304-44489323 None:intergenic 60.0%
GATTGCGCGCAGAGGATACC+TGG - chr2_4:44489330-44489349 Msa0330270:intron 60.0%
CGAGGGGTCTCGTAGCTGAA+TGG - chr2_4:44489995-44490014 Msa0330270:intron 60.0%
ACAGGACGGTTGCCACCACT+TGG - chr2_4:44490608-44490627 Msa0330270:intron 60.0%
AGCCAGGCCGTTCTACTGCA+AGG - chr2_4:44492783-44492802 Msa0330270:intron 60.0%
GAGTCTGCTAGAGGCCCTGG+TGG - chr2_4:44489046-44489065 Msa0330270:intron 65.0%
ACCTCTGCGATTGCGCGCAG+AGG - chr2_4:44489322-44489341 Msa0330270:intron 65.0%
TCCTCTGCGCGCAATCGCAG+AGG + chr2_4:44489326-44489345 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 44488824 44496281 44488824 ID=Msa0330270;Name=Msa0330270
chr2_4 mRNA 44488824 44496281 44488824 ID=Msa0330270-mRNA-1;Parent=Msa0330270;Name=Msa0330270-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.12|0|0.77|0.75|0.88|9|0|257
chr2_4 exon 44496239 44496281 44496239 ID=Msa0330270-mRNA-1:exon:13606;Parent=Msa0330270-mRNA-1
chr2_4 exon 44496019 44496118 44496019 ID=Msa0330270-mRNA-1:exon:13605;Parent=Msa0330270-mRNA-1
chr2_4 exon 44495127 44495211 44495127 ID=Msa0330270-mRNA-1:exon:13604;Parent=Msa0330270-mRNA-1
chr2_4 exon 44495031 44495114 44495031 ID=Msa0330270-mRNA-1:exon:13603;Parent=Msa0330270-mRNA-1
chr2_4 exon 44494745 44494817 44494745 ID=Msa0330270-mRNA-1:exon:13602;Parent=Msa0330270-mRNA-1
chr2_4 exon 44494476 44494655 44494476 ID=Msa0330270-mRNA-1:exon:13601;Parent=Msa0330270-mRNA-1
chr2_4 exon 44493469 44493566 44493469 ID=Msa0330270-mRNA-1:exon:13600;Parent=Msa0330270-mRNA-1
chr2_4 exon 44492301 44492389 44492301 ID=Msa0330270-mRNA-1:exon:13599;Parent=Msa0330270-mRNA-1
chr2_4 exon 44488824 44488845 44488824 ID=Msa0330270-mRNA-1:exon:13598;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44496239 44496281 44496239 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44496019 44496118 44496019 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44495127 44495211 44495127 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44495031 44495114 44495031 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44494745 44494817 44494745 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44494476 44494655 44494476 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44493469 44493566 44493469 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44492301 44492389 44492301 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
chr2_4 CDS 44488824 44488845 44488824 ID=Msa0330270-mRNA-1:cds;Parent=Msa0330270-mRNA-1
Gene Sequence

>Msa0330270

ATGACTACCACTGTCTTTAAGGTTGCTGTGTTGGGTGGTGGAATTTCAGGAGCAGTGTGTGCATCAACTCTTGCTAGAAATGGTGTTTCTGTTACACTCTTTGAGTCTGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAGAGAGAAAACTGAAGATGGGAAGGAGCTGCATTTTGACCATGGTGCTCCGTTTTTCTCGGTTAGCAAGCCTGAAGTGGCTCGTCTAGAGTCGAGGGGTCTCGTAGCTGAATGGAGAGAAAAGTTTGGTTCATTTGATATTCAAACCATTAAATTTGACAACATAGAGCAGGAAGGACTAAGCAAGAGATTTGTGGGTGTTCCAGGCATGAATTCTATATGCAAAGCATTATGCAACGAGAGTGGTGTGGAAAGCAAGTTTGGTGTGGGTATTGGAAGAGTTGAATGGTTGGATGATGAGAAATTGTGGTCATTGATAGGTGTGGATGGACAAAATCTTGGTCAGTTTAAAGGACTTGTTGCATCAGATAAGAACATAGTTTCTACTAGGATTGCAGATGTCACAGGACGGTTGCCACCACTTGATTTAAAGTTGTTGCCTCAGTTGTCAGAAAAGTTGCACAACCTTCCTGTTAGGCCATGTTTCGCAGTTATGCTGGCATTTGCAGAGCCTTTGTCAACGATTCCAGTTAAAGGCTTCTCAATTAAAAATTCTAAAGTTCTAAGTTGGGCTTACTGTGATAGCAGGAAGCCAGGCCGTTCTACTGCAAGATGCAAATTTGTAATGAAGTAA

Protein sequence

>Msa0330270

MTTTVFKVAVLGGGISGAVCASTLARNGVSVTLFESARGPGGRMSQRREKTEDGKELHFDHGAPFFSVSKPEVARLESRGLVAEWREKFGSFDIQTIKFDNIEQEGLSKRFVGVPGMNSICKALCNESGVESKFGVGIGRVEWLDDEKLWSLIGVDGQNLGQFKGLVASDKNIVSTRIADVTGRLPPLDLKLLPQLSEKLHNLPVRPCFAVMLAFAEPLSTIPVKGFSIKNSKVLSWAYCDSRKPGRSTARCKFVMK*