AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464500 MtrunA17_Chr3g0115591 84.356 326 17 2 1 293 1 325 0.0 554
Msa0464500 MtrunA17_Chr5g0425421 57.357 333 98 4 1 293 1 329 5.80e-124 357
Msa0464500 MtrunA17_Chr7g0254621 40.784 255 118 1 23 244 18 272 6.66e-68 214
Msa0464500 MtrunA17_Chr8g0373391 41.339 254 115 1 18 237 12 265 6.98e-65 205
Msa0464500 MtrunA17_Chr1g0155071 38.618 246 117 1 26 237 20 265 3.35e-60 193
Msa0464500 MtrunA17_Chr8g0385691 26.316 228 128 8 20 211 19 242 3.00e-12 65.5
Msa0464500 MtrunA17_Chr1g0205531 29.655 145 92 4 21 159 8 148 7.40e-12 65.5
Msa0464500 MtrunA17_Chr4g0058811 23.684 190 104 4 55 209 77 260 3.30e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464500 AT4G08690.2 45.914 257 103 2 9 232 6 259 1.18e-78 241
Msa0464500 AT4G08690.1 45.914 257 103 2 9 232 6 259 1.18e-78 241
Msa0464500 AT4G08690.3 45.914 257 103 2 9 232 6 259 1.18e-78 241
Msa0464500 AT1G22180.2 47.601 271 102 4 12 248 12 276 4.47e-77 238
Msa0464500 AT1G22180.4 47.601 271 102 4 12 248 12 276 4.47e-77 238
Msa0464500 AT1G75170.2 37.209 258 128 1 25 248 20 277 4.56e-62 198
Msa0464500 AT1G75170.1 37.209 258 128 1 25 248 20 277 4.56e-62 198
Msa0464500 AT1G22180.3 47.196 214 76 3 69 248 1 211 5.98e-59 189
Msa0464500 AT1G22180.1 47.196 214 76 3 69 248 1 211 5.98e-59 189
Msa0464500 AT4G36640.1 35.581 267 138 1 24 256 16 282 3.79e-57 186
Msa0464500 AT4G36640.3 35.581 267 138 1 24 256 16 282 3.79e-57 186
Msa0464500 AT4G36640.2 33.784 222 113 1 69 256 1 222 8.79e-41 142
Msa0464500 AT1G75170.3 31.606 193 98 1 90 248 2 194 2.49e-31 116
Msa0464500 AT5G63060.1 26.923 156 79 2 55 175 78 233 6.55e-12 65.1
Msa0464500 AT5G63060.2 25.967 181 98 3 52 197 40 219 7.38e-12 64.3

Find 73 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTCCTGTCTCCATTTA+AGG 0.158580 3_3:-64557283 None:intergenic
GGTATTTAAAATCACAAAAT+TGG 0.173573 3_3:+64557225 Msa0464500:CDS
CCATCCTTGGCACAATAATT+TGG 0.234391 3_3:-64557537 None:intergenic
TATGGAGGGTTTGTTTGATA+TGG 0.249989 3_3:+64558192 Msa0464500:CDS
GTAGCAAGCTTGAAGGCTTT+TGG 0.270886 3_3:+64558640 Msa0464500:three_prime_UTR
CCATAATCTTCTCTGTGTTT+TGG 0.271375 3_3:-64558174 None:intergenic
ATAACAAGACGCACTCCTTT+TGG 0.278710 3_3:+64558296 Msa0464500:CDS
CTTTATCTTATTATAATTCT+CGG 0.306203 3_3:-64558134 None:intergenic
CTTACCCAGGTAATCTCTTC+AGG 0.306944 3_3:-64557308 None:intergenic
GTTTGGTTCTCTCAAAAGTT+TGG 0.315765 3_3:+64556756 Msa0464500:five_prime_UTR
GAGATATATTGATCAGGTTT+AGG 0.320441 3_3:-64558433 None:intergenic
TTAACACAGTTTAATTAGTT+AGG 0.358837 3_3:-64556632 None:intergenic
TATATCTCTTAAATTCAGTT+TGG 0.368340 3_3:+64556739 Msa0464500:five_prime_UTR
CCAAAACACAGAGAAGATTA+TGG 0.373555 3_3:+64558174 Msa0464500:CDS
TTACCTTGTAGCAAGCTTGA+AGG 0.401442 3_3:+64558633 Msa0464500:three_prime_UTR
TTTGTTCTCATTATAAGTAC+TGG 0.408192 3_3:-64557564 None:intergenic
GTTCTGATGCATCCATTTCA+AGG 0.412879 3_3:+64557204 Msa0464500:CDS
ACCTTTAGCAACACTGATGC+AGG 0.444132 3_3:-64556783 None:intergenic
TAACTAATTAAACTGTGTTA+AGG 0.447022 3_3:+64556634 Msa0464500:five_prime_UTR
GATCAACTTGAACCTGCATT+TGG 0.447521 3_3:+64558214 Msa0464500:CDS
ATATGATATAAAACTTATGT+TGG 0.459667 3_3:+64558587 Msa0464500:three_prime_UTR
AGATCACCTGCTCCTGGTGA+GGG 0.468118 3_3:-64557778 None:intergenic
CAGATCACCTGCTCCTGGTG+AGG 0.469356 3_3:-64557779 None:intergenic
AAGTACTGGTCTTCCATCCT+TGG 0.473632 3_3:-64557550 None:intergenic
GTTGCTAATGAAGCAGAGAC+AGG 0.477872 3_3:+64557501 Msa0464500:CDS
ATGAGCTATGATATTCTAGT+TGG 0.479772 3_3:+64558547 Msa0464500:three_prime_UTR
TATTTCGTTACCGAGAAGAA+TGG 0.481590 3_3:-64557938 None:intergenic
ATTGAGGTGAGAAAGTTGAT+AGG 0.483915 3_3:+64557152 Msa0464500:CDS
CAAAGTGGTTATAAAATGAA+TGG 0.485251 3_3:+64556687 Msa0464500:five_prime_UTR
ATATCATATCTCTTAAGTCT+AGG 0.498425 3_3:-64558573 None:intergenic
GTAACTGAGATATATTGATC+AGG 0.500083 3_3:-64558439 None:intergenic
CCAAATTATTGTGCCAAGGA+TGG 0.506258 3_3:+64557537 Msa0464500:CDS
TCATTATTCCCACCAAATGC+AGG 0.506468 3_3:-64558226 None:intergenic
AAATATTATCCGCAGCGCCT+CGG 0.507386 3_3:+64557878 Msa0464500:intron
TTATCCGCAGCGCCTCGGAT+TGG 0.508009 3_3:+64557883 Msa0464500:intron
CAACTTGAACCTGCATTTGG+TGG 0.510649 3_3:+64558217 Msa0464500:CDS
GCAATCATGTATGATGCGCC+TGG 0.511685 3_3:+64557905 Msa0464500:CDS
GTCACTATCACAAGAACAGC+AGG 0.515426 3_3:+64557018 Msa0464500:CDS
AGAGTTTGCATGTGTCCAAA+AGG 0.518082 3_3:-64558311 None:intergenic
CTGAAGAAAACTGCCTCTGA+TGG 0.531528 3_3:+64556974 Msa0464500:CDS
TTCCTCCTTCAGATTTGACC+AGG 0.531700 3_3:+64558356 Msa0464500:CDS
CCAGCCAGATCACCTGCTCC+TGG 0.532714 3_3:-64557784 None:intergenic
ATAAACCTGAAGAGATTACC+TGG 0.535260 3_3:+64557303 Msa0464500:CDS
GATAGGAACATTATCAGATA+AGG 0.538137 3_3:+64557169 Msa0464500:CDS
GCCTGCATCAGTGTTGCTAA+AGG 0.544160 3_3:+64556782 Msa0464500:five_prime_UTR
ATCACCTGCTCCTGGTGAGG+GGG 0.548989 3_3:-64557776 None:intergenic
ATATGCTAAGAGAATGAGAG+AGG 0.549993 3_3:+64558270 Msa0464500:CDS
AACTTGAACCTGCATTTGGT+GGG 0.550189 3_3:+64558218 Msa0464500:CDS
TATAATGAGAACAAATCGCC+AGG 0.555150 3_3:+64557572 Msa0464500:CDS
AATATATCTCAGTTACTCGC+GGG 0.560385 3_3:+64558446 Msa0464500:CDS
ATCAGAATCTGCTACTAACC+TGG 0.564891 3_3:-64558374 None:intergenic
AAGCCTTCAAGCTTGCTACA+AGG 0.571287 3_3:-64558636 None:intergenic
GATCACCTGCTCCTGGTGAG+GGG 0.576919 3_3:-64557777 None:intergenic
AAGAATGGTTGGAAAATCCC+AGG 0.589762 3_3:-64557923 None:intergenic
TGGTGCATTCCAGATCATTG+AGG 0.589779 3_3:+64557136 Msa0464500:intron
TCGTTACCGAGAAGAATGGT+TGG 0.590066 3_3:-64557934 None:intergenic
ATCACAAGAACAGCAGGCTA+AGG 0.594560 3_3:+64557024 Msa0464500:CDS
ACATTGTGTGAGACTGATGA+TGG 0.595579 3_3:-64558334 None:intergenic
AACACAGAGAAGATTATGGA+GGG 0.598661 3_3:+64558178 Msa0464500:CDS
ACTAACCTGGTCAAATCTGA+AGG 0.603314 3_3:-64558361 None:intergenic
TGAATTGTTGCAGATGGTGA+AGG 0.607257 3_3:+64558099 Msa0464500:intron
TAGACCAAATTATTGTGCCA+AGG 0.612792 3_3:+64557533 Msa0464500:CDS
CAATCATGTATGATGCGCCT+GGG 0.614040 3_3:+64557906 Msa0464500:CDS
CAATATATCTCAGTTACTCG+CGG 0.625172 3_3:+64558445 Msa0464500:CDS
TGTTCTTGTGATAGTGACAC+TGG 0.627385 3_3:-64557013 None:intergenic
GTAATAAGTAATAACCAAAG+TGG 0.630082 3_3:+64556672 Msa0464500:five_prime_UTR
CATACATGATTGCCAATCCG+AGG 0.632178 3_3:-64557895 None:intergenic
TCGCGGGGACACAAACGTCA+TGG 0.642571 3_3:+64558462 Msa0464500:CDS
AAACACAGAGAAGATTATGG+AGG 0.646035 3_3:+64558177 Msa0464500:CDS
AACCTGGTCAAATCTGAAGG+AGG 0.655670 3_3:-64558358 None:intergenic
TTGCTAATGAAGCAGAGACA+GGG 0.659274 3_3:+64557502 Msa0464500:CDS
TAAACCTGAAGAGATTACCT+GGG 0.681766 3_3:+64557304 Msa0464500:CDS
ATATATCTCAGTTACTCGCG+GGG 0.688008 3_3:+64558447 Msa0464500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTGTTTTTTTTTTTTG+TGG - chr3_3:64556597-64556616 None:intergenic 10.0%
!!! GATAATATTTTTGTAATATA+TGG - chr3_3:64557868-64557887 None:intergenic 10.0%
!!! ATTAAAATATCAACATTTTA+TGG - chr3_3:64558017-64558036 None:intergenic 10.0%
!!! AATGTCTTTATTTATTTTAA+AGG - chr3_3:64558666-64558685 None:intergenic 10.0%
!!! TTTATTGTTTTTTTTTTTTG+TGG - chr3_3:64556597-64556616 None:intergenic 10.0%
!!! GATAATATTTTTGTAATATA+TGG - chr3_3:64557868-64557887 None:intergenic 10.0%
!!! ATTAAAATATCAACATTTTA+TGG - chr3_3:64558017-64558036 None:intergenic 10.0%
!!! AATGTCTTTATTTATTTTAA+AGG - chr3_3:64558666-64558685 None:intergenic 10.0%
!!! TTAAGAGATATATTTTAGTT+TGG - chr3_3:64556731-64556750 None:intergenic 15.0%
!! CTTTATCTTATTATAATTCT+CGG - chr3_3:64558137-64558156 None:intergenic 15.0%
!! ATATGATATAAAACTTATGT+TGG + chr3_3:64558587-64558606 Msa0464500:three_prime_UTR 15.0%
!!! TTAAGAGATATATTTTAGTT+TGG - chr3_3:64556731-64556750 None:intergenic 15.0%
!! CTTTATCTTATTATAATTCT+CGG - chr3_3:64558137-64558156 None:intergenic 15.0%
!! ATATGATATAAAACTTATGT+TGG + chr3_3:64558587-64558606 Msa0464500:three_prime_UTR 15.0%
!! TTAACACAGTTTAATTAGTT+AGG - chr3_3:64556635-64556654 None:intergenic 20.0%
!! TAACTAATTAAACTGTGTTA+AGG + chr3_3:64556634-64556653 Msa0464500:five_prime_UTR 20.0%
!! TATATCTCTTAAATTCAGTT+TGG + chr3_3:64556739-64556758 Msa0464500:five_prime_UTR 20.0%
!! TAGCTGATAATAGTTTAATT+TGG + chr3_3:64557116-64557135 Msa0464500:intron 20.0%
!!! TGATTTTAAATACCTTGAAA+TGG - chr3_3:64557219-64557238 None:intergenic 20.0%
!!! GGTATTTAAAATCACAAAAT+TGG + chr3_3:64557225-64557244 Msa0464500:CDS 20.0%
!!! TTAACAAGTATGTTTTTTCT+TGG + chr3_3:64557467-64557486 Msa0464500:intron 20.0%
!! TTAACACAGTTTAATTAGTT+AGG - chr3_3:64556635-64556654 None:intergenic 20.0%
!! TAACTAATTAAACTGTGTTA+AGG + chr3_3:64556634-64556653 Msa0464500:five_prime_UTR 20.0%
!! TATATCTCTTAAATTCAGTT+TGG + chr3_3:64556739-64556758 Msa0464500:five_prime_UTR 20.0%
!! TAGCTGATAATAGTTTAATT+TGG + chr3_3:64557116-64557135 Msa0464500:intron 20.0%
!!! TGATTTTAAATACCTTGAAA+TGG - chr3_3:64557219-64557238 None:intergenic 20.0%
!!! GGTATTTAAAATCACAAAAT+TGG + chr3_3:64557225-64557244 Msa0464500:CDS 20.0%
!!! TTAACAAGTATGTTTTTTCT+TGG + chr3_3:64557467-64557486 Msa0464500:intron 20.0%
! GTAATAAGTAATAACCAAAG+TGG + chr3_3:64556672-64556691 Msa0464500:five_prime_UTR 25.0%
!! CATTCATTTTATAACCACTT+TGG - chr3_3:64556689-64556708 None:intergenic 25.0%
! CAAAGTGGTTATAAAATGAA+TGG + chr3_3:64556687-64556706 Msa0464500:five_prime_UTR 25.0%
! TACAAACCATAATCATATCT+AGG - chr3_3:64556812-64556831 None:intergenic 25.0%
! ATGTCCAATAATTGAAATCT+TGG + chr3_3:64557048-64557067 Msa0464500:intron 25.0%
!!! AACAACAATATTTTGAGTGA+AGG + chr3_3:64557087-64557106 Msa0464500:intron 25.0%
! TGTTGAAAAAAAGCCTTAAA+TGG + chr3_3:64557270-64557289 Msa0464500:CDS 25.0%
! AACAAAGCCTAAAATTGTTA+TGG + chr3_3:64557373-64557392 Msa0464500:intron 25.0%
!!! AGTATGTTTTTTCTTGGTTA+AGG + chr3_3:64557473-64557492 Msa0464500:intron 25.0%
! TTTGTTCTCATTATAAGTAC+TGG - chr3_3:64557567-64557586 None:intergenic 25.0%
!!! TTTTTTTTTTCAGCAGAAGT+TGG + chr3_3:64557989-64558008 Msa0464500:intron 25.0%
! AGAACATTGATCAAACTAAT+CGG - chr3_3:64558054-64558073 None:intergenic 25.0%
! ATATCATATCTCTTAAGTCT+AGG - chr3_3:64558576-64558595 None:intergenic 25.0%
! GTAATAAGTAATAACCAAAG+TGG + chr3_3:64556672-64556691 Msa0464500:five_prime_UTR 25.0%
!! CATTCATTTTATAACCACTT+TGG - chr3_3:64556689-64556708 None:intergenic 25.0%
! CAAAGTGGTTATAAAATGAA+TGG + chr3_3:64556687-64556706 Msa0464500:five_prime_UTR 25.0%
! TACAAACCATAATCATATCT+AGG - chr3_3:64556812-64556831 None:intergenic 25.0%
! ATGTCCAATAATTGAAATCT+TGG + chr3_3:64557048-64557067 Msa0464500:intron 25.0%
!!! AACAACAATATTTTGAGTGA+AGG + chr3_3:64557087-64557106 Msa0464500:intron 25.0%
! TGTTGAAAAAAAGCCTTAAA+TGG + chr3_3:64557270-64557289 Msa0464500:CDS 25.0%
! AACAAAGCCTAAAATTGTTA+TGG + chr3_3:64557373-64557392 Msa0464500:intron 25.0%
!!! AGTATGTTTTTTCTTGGTTA+AGG + chr3_3:64557473-64557492 Msa0464500:intron 25.0%
! TTTGTTCTCATTATAAGTAC+TGG - chr3_3:64557567-64557586 None:intergenic 25.0%
!!! TTTTTTTTTTCAGCAGAAGT+TGG + chr3_3:64557989-64558008 Msa0464500:intron 25.0%
! AGAACATTGATCAAACTAAT+CGG - chr3_3:64558054-64558073 None:intergenic 25.0%
! ATATCATATCTCTTAAGTCT+AGG - chr3_3:64558576-64558595 None:intergenic 25.0%
GCTACTAACAAATGAAAACA+TGG + chr3_3:64556556-64556575 Msa0464500:intron 30.0%
ACTAACAAATGAAAACATGG+TGG + chr3_3:64556559-64556578 Msa0464500:intron 30.0%
GGTAAACCTAGATATGATTA+TGG + chr3_3:64556803-64556822 Msa0464500:intron 30.0%
TGCTCCAAGATTTCAATTAT+TGG - chr3_3:64557055-64557074 None:intergenic 30.0%
!! AATATTTTGAGTGAAGGATG+AGG + chr3_3:64557093-64557112 Msa0464500:intron 30.0%
GATAGGAACATTATCAGATA+AGG + chr3_3:64557169-64557188 Msa0464500:CDS 30.0%
TATATTCCTGTCTCCATTTA+AGG - chr3_3:64557286-64557305 None:intergenic 30.0%
! AACACAGCCATAACAATTTT+AGG - chr3_3:64557383-64557402 None:intergenic 30.0%
TCAGATTGAATTGAAAGATG+AGG + chr3_3:64557413-64557432 Msa0464500:intron 30.0%
!! TAAGCATTTTGTTTACTGCA+TGG + chr3_3:64557733-64557752 Msa0464500:CDS 30.0%
AAAGAATGAATTGTTGCAGA+TGG + chr3_3:64558093-64558112 Msa0464500:intron 30.0%
GAGATATATTGATCAGGTTT+AGG - chr3_3:64558436-64558455 None:intergenic 30.0%
GTAACTGAGATATATTGATC+AGG - chr3_3:64558442-64558461 None:intergenic 30.0%
ATGAGCTATGATATTCTAGT+TGG + chr3_3:64558547-64558566 Msa0464500:three_prime_UTR 30.0%
GCTACTAACAAATGAAAACA+TGG + chr3_3:64556556-64556575 Msa0464500:intron 30.0%
ACTAACAAATGAAAACATGG+TGG + chr3_3:64556559-64556578 Msa0464500:intron 30.0%
GGTAAACCTAGATATGATTA+TGG + chr3_3:64556803-64556822 Msa0464500:intron 30.0%
TGCTCCAAGATTTCAATTAT+TGG - chr3_3:64557055-64557074 None:intergenic 30.0%
!! AATATTTTGAGTGAAGGATG+AGG + chr3_3:64557093-64557112 Msa0464500:intron 30.0%
GATAGGAACATTATCAGATA+AGG + chr3_3:64557169-64557188 Msa0464500:CDS 30.0%
TATATTCCTGTCTCCATTTA+AGG - chr3_3:64557286-64557305 None:intergenic 30.0%
! AACACAGCCATAACAATTTT+AGG - chr3_3:64557383-64557402 None:intergenic 30.0%
TCAGATTGAATTGAAAGATG+AGG + chr3_3:64557413-64557432 Msa0464500:intron 30.0%
!! TAAGCATTTTGTTTACTGCA+TGG + chr3_3:64557733-64557752 Msa0464500:CDS 30.0%
AAAGAATGAATTGTTGCAGA+TGG + chr3_3:64558093-64558112 Msa0464500:intron 30.0%
GAGATATATTGATCAGGTTT+AGG - chr3_3:64558436-64558455 None:intergenic 30.0%
GTAACTGAGATATATTGATC+AGG - chr3_3:64558442-64558461 None:intergenic 30.0%
ATGAGCTATGATATTCTAGT+TGG + chr3_3:64558547-64558566 Msa0464500:three_prime_UTR 30.0%
!! GTTTGGTTCTCTCAAAAGTT+TGG + chr3_3:64556756-64556775 Msa0464500:five_prime_UTR 35.0%
! ACACTGGTAACATTTTCTCA+TGG - chr3_3:64557000-64557019 None:intergenic 35.0%
! ATTGAGGTGAGAAAGTTGAT+AGG + chr3_3:64557152-64557171 Msa0464500:CDS 35.0%
AAAAAGCCTTAAATGGAGAC+AGG + chr3_3:64557277-64557296 Msa0464500:CDS 35.0%
ATAAACCTGAAGAGATTACC+TGG + chr3_3:64557303-64557322 Msa0464500:CDS 35.0%
TAAACCTGAAGAGATTACCT+GGG + chr3_3:64557304-64557323 Msa0464500:CDS 35.0%
TAGACCAAATTATTGTGCCA+AGG + chr3_3:64557533-64557552 Msa0464500:CDS 35.0%
TATAATGAGAACAAATCGCC+AGG + chr3_3:64557572-64557591 Msa0464500:CDS 35.0%
! AGTGATTTTCAGAAGAAACC+TGG - chr3_3:64557593-64557612 None:intergenic 35.0%
ACTTCAGCATGAGTGAAAAA+TGG + chr3_3:64557634-64557653 Msa0464500:intron 35.0%
! GATTTTCCAACCATTCTTCT+CGG + chr3_3:64557928-64557947 Msa0464500:CDS 35.0%
TATTTCGTTACCGAGAAGAA+TGG - chr3_3:64557941-64557960 None:intergenic 35.0%
! CCATAATCTTCTCTGTGTTT+TGG - chr3_3:64558177-64558196 None:intergenic 35.0%
CCAAAACACAGAGAAGATTA+TGG + chr3_3:64558174-64558193 Msa0464500:CDS 35.0%
AAACACAGAGAAGATTATGG+AGG + chr3_3:64558177-64558196 Msa0464500:CDS 35.0%
AACACAGAGAAGATTATGGA+GGG + chr3_3:64558178-64558197 Msa0464500:CDS 35.0%
! TATGGAGGGTTTGTTTGATA+TGG + chr3_3:64558192-64558211 Msa0464500:CDS 35.0%
ATATGCTAAGAGAATGAGAG+AGG + chr3_3:64558270-64558289 Msa0464500:CDS 35.0%
! ATCAACTATTTTCTCGTCGT+TGG - chr3_3:64558404-64558423 None:intergenic 35.0%
CAATATATCTCAGTTACTCG+CGG + chr3_3:64558445-64558464 Msa0464500:CDS 35.0%
AATATATCTCAGTTACTCGC+GGG + chr3_3:64558446-64558465 Msa0464500:CDS 35.0%
ACATATTTGCATTCAGCAGA+AGG + chr3_3:64558686-64558705 Msa0464500:three_prime_UTR 35.0%
!! GTTTGGTTCTCTCAAAAGTT+TGG + chr3_3:64556756-64556775 Msa0464500:five_prime_UTR 35.0%
! ACACTGGTAACATTTTCTCA+TGG - chr3_3:64557000-64557019 None:intergenic 35.0%
! ATTGAGGTGAGAAAGTTGAT+AGG + chr3_3:64557152-64557171 Msa0464500:CDS 35.0%
AAAAAGCCTTAAATGGAGAC+AGG + chr3_3:64557277-64557296 Msa0464500:CDS 35.0%
ATAAACCTGAAGAGATTACC+TGG + chr3_3:64557303-64557322 Msa0464500:CDS 35.0%
TAAACCTGAAGAGATTACCT+GGG + chr3_3:64557304-64557323 Msa0464500:CDS 35.0%
TAGACCAAATTATTGTGCCA+AGG + chr3_3:64557533-64557552 Msa0464500:CDS 35.0%
TATAATGAGAACAAATCGCC+AGG + chr3_3:64557572-64557591 Msa0464500:CDS 35.0%
! AGTGATTTTCAGAAGAAACC+TGG - chr3_3:64557593-64557612 None:intergenic 35.0%
ACTTCAGCATGAGTGAAAAA+TGG + chr3_3:64557634-64557653 Msa0464500:intron 35.0%
! GATTTTCCAACCATTCTTCT+CGG + chr3_3:64557928-64557947 Msa0464500:CDS 35.0%
TATTTCGTTACCGAGAAGAA+TGG - chr3_3:64557941-64557960 None:intergenic 35.0%
! CCATAATCTTCTCTGTGTTT+TGG - chr3_3:64558177-64558196 None:intergenic 35.0%
CCAAAACACAGAGAAGATTA+TGG + chr3_3:64558174-64558193 Msa0464500:CDS 35.0%
AAACACAGAGAAGATTATGG+AGG + chr3_3:64558177-64558196 Msa0464500:CDS 35.0%
AACACAGAGAAGATTATGGA+GGG + chr3_3:64558178-64558197 Msa0464500:CDS 35.0%
! TATGGAGGGTTTGTTTGATA+TGG + chr3_3:64558192-64558211 Msa0464500:CDS 35.0%
ATATGCTAAGAGAATGAGAG+AGG + chr3_3:64558270-64558289 Msa0464500:CDS 35.0%
! ATCAACTATTTTCTCGTCGT+TGG - chr3_3:64558404-64558423 None:intergenic 35.0%
CAATATATCTCAGTTACTCG+CGG + chr3_3:64558445-64558464 Msa0464500:CDS 35.0%
AATATATCTCAGTTACTCGC+GGG + chr3_3:64558446-64558465 Msa0464500:CDS 35.0%
! TGTTCTTGTGATAGTGACAC+TGG - chr3_3:64557016-64557035 None:intergenic 40.0%
ACTTTCTCACCTCAATGATC+TGG - chr3_3:64557148-64557167 None:intergenic 40.0%
GTTCTGATGCATCCATTTCA+AGG + chr3_3:64557204-64557223 Msa0464500:CDS 40.0%
TTGCTAATGAAGCAGAGACA+GGG + chr3_3:64557502-64557521 Msa0464500:CDS 40.0%
CCATCCTTGGCACAATAATT+TGG - chr3_3:64557540-64557559 None:intergenic 40.0%
CCAAATTATTGTGCCAAGGA+TGG + chr3_3:64557537-64557556 Msa0464500:CDS 40.0%
CACTTGACAAACTGAAACCA+TGG - chr3_3:64557817-64557836 None:intergenic 40.0%
AAGAATGGTTGGAAAATCCC+AGG - chr3_3:64557926-64557945 None:intergenic 40.0%
TGAATTGTTGCAGATGGTGA+AGG + chr3_3:64558099-64558118 Msa0464500:intron 40.0%
GATCAACTTGAACCTGCATT+TGG + chr3_3:64558214-64558233 Msa0464500:CDS 40.0%
AACTTGAACCTGCATTTGGT+GGG + chr3_3:64558218-64558237 Msa0464500:CDS 40.0%
TCATTATTCCCACCAAATGC+AGG - chr3_3:64558229-64558248 None:intergenic 40.0%
! ATAACAAGACGCACTCCTTT+TGG + chr3_3:64558296-64558315 Msa0464500:CDS 40.0%
AGAGTTTGCATGTGTCCAAA+AGG - chr3_3:64558314-64558333 None:intergenic 40.0%
ACATTGTGTGAGACTGATGA+TGG - chr3_3:64558337-64558356 None:intergenic 40.0%
ACTAACCTGGTCAAATCTGA+AGG - chr3_3:64558364-64558383 None:intergenic 40.0%
ATCAGAATCTGCTACTAACC+TGG - chr3_3:64558377-64558396 None:intergenic 40.0%
ATATATCTCAGTTACTCGCG+GGG + chr3_3:64558447-64558466 Msa0464500:CDS 40.0%
TTACCTTGTAGCAAGCTTGA+AGG + chr3_3:64558633-64558652 Msa0464500:three_prime_UTR 40.0%
! TGTTCTTGTGATAGTGACAC+TGG - chr3_3:64557016-64557035 None:intergenic 40.0%
ACTTTCTCACCTCAATGATC+TGG - chr3_3:64557148-64557167 None:intergenic 40.0%
GTTCTGATGCATCCATTTCA+AGG + chr3_3:64557204-64557223 Msa0464500:CDS 40.0%
TTGCTAATGAAGCAGAGACA+GGG + chr3_3:64557502-64557521 Msa0464500:CDS 40.0%
CCATCCTTGGCACAATAATT+TGG - chr3_3:64557540-64557559 None:intergenic 40.0%
CCAAATTATTGTGCCAAGGA+TGG + chr3_3:64557537-64557556 Msa0464500:CDS 40.0%
CACTTGACAAACTGAAACCA+TGG - chr3_3:64557817-64557836 None:intergenic 40.0%
AAGAATGGTTGGAAAATCCC+AGG - chr3_3:64557926-64557945 None:intergenic 40.0%
TGAATTGTTGCAGATGGTGA+AGG + chr3_3:64558099-64558118 Msa0464500:intron 40.0%
GATCAACTTGAACCTGCATT+TGG + chr3_3:64558214-64558233 Msa0464500:CDS 40.0%
AACTTGAACCTGCATTTGGT+GGG + chr3_3:64558218-64558237 Msa0464500:CDS 40.0%
TCATTATTCCCACCAAATGC+AGG - chr3_3:64558229-64558248 None:intergenic 40.0%
! ATAACAAGACGCACTCCTTT+TGG + chr3_3:64558296-64558315 Msa0464500:CDS 40.0%
AGAGTTTGCATGTGTCCAAA+AGG - chr3_3:64558314-64558333 None:intergenic 40.0%
ACATTGTGTGAGACTGATGA+TGG - chr3_3:64558337-64558356 None:intergenic 40.0%
ACTAACCTGGTCAAATCTGA+AGG - chr3_3:64558364-64558383 None:intergenic 40.0%
ATCAGAATCTGCTACTAACC+TGG - chr3_3:64558377-64558396 None:intergenic 40.0%
ATATATCTCAGTTACTCGCG+GGG + chr3_3:64558447-64558466 Msa0464500:CDS 40.0%
TTACCTTGTAGCAAGCTTGA+AGG + chr3_3:64558633-64558652 Msa0464500:three_prime_UTR 40.0%
ACCTTTAGCAACACTGATGC+AGG - chr3_3:64556786-64556805 None:intergenic 45.0%
CTGAAGAAAACTGCCTCTGA+TGG + chr3_3:64556974-64556993 Msa0464500:CDS 45.0%
! CATTTTCTCATGGCCATCAG+AGG - chr3_3:64556990-64557009 None:intergenic 45.0%
GTCACTATCACAAGAACAGC+AGG + chr3_3:64557018-64557037 Msa0464500:CDS 45.0%
ATCACAAGAACAGCAGGCTA+AGG + chr3_3:64557024-64557043 Msa0464500:CDS 45.0%
TGGTGCATTCCAGATCATTG+AGG + chr3_3:64557136-64557155 Msa0464500:intron 45.0%
CTTACCCAGGTAATCTCTTC+AGG - chr3_3:64557311-64557330 None:intergenic 45.0%
AAGCAAGCAGTAACTTACCC+AGG - chr3_3:64557324-64557343 None:intergenic 45.0%
GTTGCTAATGAAGCAGAGAC+AGG + chr3_3:64557501-64557520 Msa0464500:CDS 45.0%
!! AAGTACTGGTCTTCCATCCT+TGG - chr3_3:64557553-64557572 None:intergenic 45.0%
! ATCTGGCTGGTTGATTTCCA+TGG + chr3_3:64557797-64557816 Msa0464500:intron 45.0%
AAATATTATCCGCAGCGCCT+CGG + chr3_3:64557878-64557897 Msa0464500:intron 45.0%
CATACATGATTGCCAATCCG+AGG - chr3_3:64557898-64557917 None:intergenic 45.0%
CAATCATGTATGATGCGCCT+GGG + chr3_3:64557906-64557925 Msa0464500:CDS 45.0%
TCGTTACCGAGAAGAATGGT+TGG - chr3_3:64557937-64557956 None:intergenic 45.0%
CAACTTGAACCTGCATTTGG+TGG + chr3_3:64558217-64558236 Msa0464500:CDS 45.0%
TTCCTCCTTCAGATTTGACC+AGG + chr3_3:64558356-64558375 Msa0464500:CDS 45.0%
AACCTGGTCAAATCTGAAGG+AGG - chr3_3:64558361-64558380 None:intergenic 45.0%
!! AAGCCTTCAAGCTTGCTACA+AGG - chr3_3:64558639-64558658 None:intergenic 45.0%
! GTAGCAAGCTTGAAGGCTTT+TGG + chr3_3:64558640-64558659 Msa0464500:three_prime_UTR 45.0%
ACCTTTAGCAACACTGATGC+AGG - chr3_3:64556786-64556805 None:intergenic 45.0%
CTGAAGAAAACTGCCTCTGA+TGG + chr3_3:64556974-64556993 Msa0464500:CDS 45.0%
! CATTTTCTCATGGCCATCAG+AGG - chr3_3:64556990-64557009 None:intergenic 45.0%
GTCACTATCACAAGAACAGC+AGG + chr3_3:64557018-64557037 Msa0464500:CDS 45.0%
ATCACAAGAACAGCAGGCTA+AGG + chr3_3:64557024-64557043 Msa0464500:CDS 45.0%
TGGTGCATTCCAGATCATTG+AGG + chr3_3:64557136-64557155 Msa0464500:intron 45.0%
CTTACCCAGGTAATCTCTTC+AGG - chr3_3:64557311-64557330 None:intergenic 45.0%
AAGCAAGCAGTAACTTACCC+AGG - chr3_3:64557324-64557343 None:intergenic 45.0%
GTTGCTAATGAAGCAGAGAC+AGG + chr3_3:64557501-64557520 Msa0464500:CDS 45.0%
!! AAGTACTGGTCTTCCATCCT+TGG - chr3_3:64557553-64557572 None:intergenic 45.0%
! ATCTGGCTGGTTGATTTCCA+TGG + chr3_3:64557797-64557816 Msa0464500:intron 45.0%
AAATATTATCCGCAGCGCCT+CGG + chr3_3:64557878-64557897 Msa0464500:intron 45.0%
CATACATGATTGCCAATCCG+AGG - chr3_3:64557898-64557917 None:intergenic 45.0%
CAATCATGTATGATGCGCCT+GGG + chr3_3:64557906-64557925 Msa0464500:CDS 45.0%
TCGTTACCGAGAAGAATGGT+TGG - chr3_3:64557937-64557956 None:intergenic 45.0%
CAACTTGAACCTGCATTTGG+TGG + chr3_3:64558217-64558236 Msa0464500:CDS 45.0%
TTCCTCCTTCAGATTTGACC+AGG + chr3_3:64558356-64558375 Msa0464500:CDS 45.0%
AACCTGGTCAAATCTGAAGG+AGG - chr3_3:64558361-64558380 None:intergenic 45.0%
!! AAGCCTTCAAGCTTGCTACA+AGG - chr3_3:64558639-64558658 None:intergenic 45.0%
! GTAGCAAGCTTGAAGGCTTT+TGG + chr3_3:64558640-64558659 Msa0464500:three_prime_UTR 45.0%
!!! AATTATTTTAAATAAAAATG+AGG + chr3_3:64556870-64556889 Msa0464500:intron 5.0%
!!! AATTATTTTAAATAAAAATG+AGG + chr3_3:64556870-64556889 Msa0464500:intron 5.0%
! GCCTGCATCAGTGTTGCTAA+AGG + chr3_3:64556782-64556801 Msa0464500:five_prime_UTR 50.0%
TCTAAATCTTCCCCCTCACC+AGG + chr3_3:64557766-64557785 Msa0464500:CDS 50.0%
GCAATCATGTATGATGCGCC+TGG + chr3_3:64557905-64557924 Msa0464500:CDS 50.0%
! GCCTGCATCAGTGTTGCTAA+AGG + chr3_3:64556782-64556801 Msa0464500:five_prime_UTR 50.0%
TCTAAATCTTCCCCCTCACC+AGG + chr3_3:64557766-64557785 Msa0464500:CDS 50.0%
GCAATCATGTATGATGCGCC+TGG + chr3_3:64557905-64557924 Msa0464500:CDS 50.0%
AGATCACCTGCTCCTGGTGA+GGG - chr3_3:64557781-64557800 None:intergenic 55.0%
AGATCACCTGCTCCTGGTGA+GGG - chr3_3:64557781-64557800 None:intergenic 55.0%
ATCACCTGCTCCTGGTGAGG+GGG - chr3_3:64557779-64557798 None:intergenic 60.0%
GATCACCTGCTCCTGGTGAG+GGG - chr3_3:64557780-64557799 None:intergenic 60.0%
CAGATCACCTGCTCCTGGTG+AGG - chr3_3:64557782-64557801 None:intergenic 60.0%
CTCACCAGGAGCAGGTGATC+TGG + chr3_3:64557780-64557799 Msa0464500:intron 60.0%
TTATCCGCAGCGCCTCGGAT+TGG + chr3_3:64557883-64557902 Msa0464500:intron 60.0%
!! ATTGCCAATCCGAGGCGCTG+CGG - chr3_3:64557890-64557909 None:intergenic 60.0%
TCGCGGGGACACAAACGTCA+TGG + chr3_3:64558462-64558481 Msa0464500:CDS 60.0%
ATCACCTGCTCCTGGTGAGG+GGG - chr3_3:64557779-64557798 None:intergenic 60.0%
GATCACCTGCTCCTGGTGAG+GGG - chr3_3:64557780-64557799 None:intergenic 60.0%
CAGATCACCTGCTCCTGGTG+AGG - chr3_3:64557782-64557801 None:intergenic 60.0%
CTCACCAGGAGCAGGTGATC+TGG + chr3_3:64557780-64557799 Msa0464500:intron 60.0%
TTATCCGCAGCGCCTCGGAT+TGG + chr3_3:64557883-64557902 Msa0464500:intron 60.0%
!! ATTGCCAATCCGAGGCGCTG+CGG - chr3_3:64557890-64557909 None:intergenic 60.0%
TCGCGGGGACACAAACGTCA+TGG + chr3_3:64558462-64558481 Msa0464500:CDS 60.0%
TCTTCCCCCTCACCAGGAGC+AGG + chr3_3:64557772-64557791 Msa0464500:CDS 65.0%
CCAGCCAGATCACCTGCTCC+TGG - chr3_3:64557787-64557806 None:intergenic 65.0%
CCAGGAGCAGGTGATCTGGC+TGG + chr3_3:64557784-64557803 Msa0464500:intron 65.0%
TCTTCCCCCTCACCAGGAGC+AGG + chr3_3:64557772-64557791 Msa0464500:CDS 65.0%
CCAGCCAGATCACCTGCTCC+TGG - chr3_3:64557787-64557806 None:intergenic 65.0%
CCAGGAGCAGGTGATCTGGC+TGG + chr3_3:64557784-64557803 Msa0464500:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 64556555 64558706 64556555 ID=Msa0464500;Name=Msa0464500
chr3_3 mRNA 64556555 64558706 64556555 ID=Msa0464500-mRNA-1;Parent=Msa0464500;Name=Msa0464500-mRNA-1;_AED=0.13;_eAED=0.13;_QI=220|0.85|0.75|1|0.71|0.75|8|217|293
chr3_3 exon 64556555 64556572 64556555 ID=Msa0464500-mRNA-1:exon:14200;Parent=Msa0464500-mRNA-1
chr3_3 exon 64556622 64556803 64556622 ID=Msa0464500-mRNA-1:exon:14201;Parent=Msa0464500-mRNA-1
chr3_3 exon 64556942 64557045 64556942 ID=Msa0464500-mRNA-1:exon:14202;Parent=Msa0464500-mRNA-1
chr3_3 exon 64557149 64557325 64557149 ID=Msa0464500-mRNA-1:exon:14203;Parent=Msa0464500-mRNA-1
chr3_3 exon 64557495 64557593 64557495 ID=Msa0464500-mRNA-1:exon:14204;Parent=Msa0464500-mRNA-1
chr3_3 exon 64557707 64557793 64557707 ID=Msa0464500-mRNA-1:exon:14205;Parent=Msa0464500-mRNA-1
chr3_3 exon 64557893 64557949 64557893 ID=Msa0464500-mRNA-1:exon:14206;Parent=Msa0464500-mRNA-1
chr3_3 exon 64558112 64558706 64558112 ID=Msa0464500-mRNA-1:exon:14207;Parent=Msa0464500-mRNA-1
chr3_3 five_prime_UTR 64556555 64556572 64556555 ID=Msa0464500-mRNA-1:five_prime_utr;Parent=Msa0464500-mRNA-1
chr3_3 five_prime_UTR 64556622 64556803 64556622 ID=Msa0464500-mRNA-1:five_prime_utr;Parent=Msa0464500-mRNA-1
chr3_3 five_prime_UTR 64556942 64556961 64556942 ID=Msa0464500-mRNA-1:five_prime_utr;Parent=Msa0464500-mRNA-1
chr3_3 CDS 64556962 64557045 64556962 ID=Msa0464500-mRNA-1:cds;Parent=Msa0464500-mRNA-1
chr3_3 CDS 64557149 64557325 64557149 ID=Msa0464500-mRNA-1:cds;Parent=Msa0464500-mRNA-1
chr3_3 CDS 64557495 64557593 64557495 ID=Msa0464500-mRNA-1:cds;Parent=Msa0464500-mRNA-1
chr3_3 CDS 64557707 64557793 64557707 ID=Msa0464500-mRNA-1:cds;Parent=Msa0464500-mRNA-1
chr3_3 CDS 64557893 64557949 64557893 ID=Msa0464500-mRNA-1:cds;Parent=Msa0464500-mRNA-1
chr3_3 CDS 64558112 64558489 64558112 ID=Msa0464500-mRNA-1:cds;Parent=Msa0464500-mRNA-1
chr3_3 three_prime_UTR 64558490 64558706 64558490 ID=Msa0464500-mRNA-1:three_prime_utr;Parent=Msa0464500-mRNA-1
Gene Sequence

>Msa0464500

ATGAGTGAGAATCTGAAGAAAACTGCCTCTGATGGCCATGAGAAAATGTTACCAGTGTCACTATCACAAGAACAGCAGGCTAAGATCATTGAGGTGAGAAAGTTGATAGGAACATTATCAGATAAGGAATCTGTGTACTGTTCTGATGCATCCATTTCAAGGTATTTAAAATCACAAAATTGGAATGTTAAGAAAGCTTCTCAAATGTTGAAAAAAAGCCTTAAATGGAGACAGGAATATAAACCTGAAGAGATTACCTGGGATGATGTTGCTAATGAAGCAGAGACAGGGAAAATGTATAGACCAAATTATTGTGCCAAGGATGGAAGACCAGTACTTATAATGAGAACAAATCGCCAGAAGTCGAAGACATTAGTAGAAGAGATTAAGCATTTTGTTTACTGCATGGAGAATGCAATTCTAAATCTTCCCCCTCACCAGGAGCAGCGCCTCGGATTGGCAATCATGTATGATGCGCCTGGGATTTTCCAACCATTCTTCTCGATGGTGAAGGTTCTGCTTGAGACCGAGAATTATAATAAGATAAAGTTTGTTTATTCTAACGACCAAAACACAGAGAAGATTATGGAGGGTTTGTTTGATATGGATCAACTTGAACCTGCATTTGGTGGGAATAATGACACAGAATTTGATATGAATAAATATGCTAAGAGAATGAGAGAGGAAGATAACAAGACGCACTCCTTTTGGACACATGCAAACTCTCCATCATCAGTCTCACACAATGTTCCTCCTTCAGATTTGACCAGGTTAGTAGCAGATTCTGATGCTTCCAACGACGAGAAAATAGTTGATTCGTCAGTTCCTAAACCTGATCAATATATCTCAGTTACTCGCGGGGACACAAACGTCATGGCATAG

Protein sequence

>Msa0464500

MSENLKKTASDGHEKMLPVSLSQEQQAKIIEVRKLIGTLSDKESVYCSDASISRYLKSQNWNVKKASQMLKKSLKWRQEYKPEEITWDDVANEAETGKMYRPNYCAKDGRPVLIMRTNRQKSKTLVEEIKHFVYCMENAILNLPPHQEQRLGLAIMYDAPGIFQPFFSMVKVLLETENYNKIKFVYSNDQNTEKIMEGLFDMDQLEPAFGGNNDTEFDMNKYAKRMREEDNKTHSFWTHANSPSSVSHNVPPSDLTRLVADSDASNDEKIVDSSVPKPDQYISVTRGDTNVMA*