Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112690 | sp|Q08448|LPL1_YEAST | 25.769 | 260 | 157 | 9 | 27 | 275 | 2 | 236 | 4.74e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112690 | G7IDH3 | 98.588 | 354 | 5 | 0 | 1 | 354 | 1 | 354 | 0.0 | 722 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018940 | Msa0112690 | 0.970962 | 2.022070e-132 | -8.615850e-47 |
| Msa0037880 | Msa0112690 | 0.811234 | 7.752511e-51 | -8.615850e-47 |
| Msa0042920 | Msa0112690 | 0.813546 | 2.423641e-51 | -8.615850e-47 |
| Msa0050200 | Msa0112690 | 0.970039 | 5.141386e-131 | -8.615850e-47 |
| Msa0065950 | Msa0112690 | 0.807862 | 4.109021e-50 | -8.615850e-47 |
| Msa0112690 | Msa0183010 | -0.804435 | 2.163087e-49 | -8.615850e-47 |
| Msa0112690 | Msa0199800 | -0.808482 | 3.031103e-50 | -8.615850e-47 |
| Msa0112690 | Msa0230640 | -0.812702 | 3.712523e-51 | -8.615850e-47 |
| Msa0112690 | Msa0251640 | 0.803662 | 3.133033e-49 | -8.615850e-47 |
| Msa0112690 | Msa0387280 | 0.827714 | 1.342833e-54 | -8.615850e-47 |
| Msa0112690 | Msa0412840 | 0.815886 | 7.348181e-52 | -8.615850e-47 |
| Msa0112690 | Msa0457510 | 0.806339 | 8.631412e-50 | -8.615850e-47 |
| Msa0112690 | Msa0490140 | 0.812377 | 4.372140e-51 | -8.615850e-47 |
| Msa0112690 | Msa0521740 | 0.815448 | 9.197880e-52 | -8.615850e-47 |
| Msa0112690 | Msa0610180 | 0.800391 | 1.473170e-48 | -8.615850e-47 |
| Msa0112690 | Msa0643320 | 0.813802 | 2.128050e-51 | -8.615850e-47 |
| Msa0112690 | Msa0683140 | 0.802867 | 4.576807e-49 | -8.615850e-47 |
| Msa0112690 | Msa0747270 | 0.804848 | 1.774168e-49 | -8.615850e-47 |
| Msa0112690 | Msa0817460 | 0.807803 | 4.227872e-50 | -8.615850e-47 |
| Msa0112690 | Msa0936300 | 0.805306 | 1.422839e-49 | -8.615850e-47 |
| Msa0112690 | Msa0948320 | 0.805182 | 1.510350e-49 | -8.615850e-47 |
| Msa0112690 | Msa0970480 | 0.804341 | 2.262845e-49 | -8.615850e-47 |
| Msa0112690 | Msa0973100 | 0.828606 | 8.189954e-55 | -8.615850e-47 |
| Msa0112690 | Msa0994370 | 0.803005 | 4.285480e-49 | -8.615850e-47 |
| Msa0112690 | Msa1009090 | 0.802669 | 5.027823e-49 | -8.615850e-47 |
| Msa0112690 | Msa1111870 | 0.828837 | 7.200110e-55 | -8.615850e-47 |
| Msa0112690 | Msa1119480 | 0.803425 | 3.507550e-49 | -8.615850e-47 |
| Msa0112690 | Msa1186360 | 0.813604 | 2.352686e-51 | -8.615850e-47 |
| Msa0112690 | Msa1211140 | -0.808317 | 3.285949e-50 | -8.615850e-47 |
| Msa0112690 | Msa1263290 | -0.821625 | 3.655493e-53 | -8.615850e-47 |
| Msa0112690 | Msa1270660 | 0.803035 | 4.224617e-49 | -8.615850e-47 |
| Msa0112690 | Msa1299290 | -0.800222 | 1.595032e-48 | -8.615850e-47 |
| Msa0112690 | Msa1403340 | 0.808998 | 2.350874e-50 | -8.615850e-47 |
| Msa0112690 | Msa1446880 | 0.807667 | 4.520048e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112690 | MtrunA17_Chr1g0170451 | 98.588 | 354 | 5 | 0 | 1 | 354 | 1 | 354 | 0.0 | 722 |
| Msa0112690 | MtrunA17_Chr0c06g0493481 | 53.509 | 342 | 133 | 6 | 31 | 352 | 81 | 416 | 8.04e-120 | 352 |
| Msa0112690 | MtrunA17_Chr4g0072801 | 53.107 | 354 | 145 | 6 | 20 | 353 | 58 | 410 | 4.65e-119 | 350 |
| Msa0112690 | MtrunA17_Chr3g0140681 | 50.289 | 346 | 155 | 6 | 23 | 352 | 53 | 397 | 9.21e-109 | 323 |
| Msa0112690 | MtrunA17_Chr8g0379001 | 41.620 | 358 | 182 | 5 | 20 | 350 | 79 | 436 | 3.25e-88 | 272 |
| Msa0112690 | MtrunA17_Chr2g0283771 | 42.598 | 331 | 168 | 3 | 30 | 338 | 83 | 413 | 6.41e-84 | 261 |
| Msa0112690 | MtrunA17_Chr7g0214251 | 45.882 | 85 | 37 | 2 | 98 | 173 | 42 | 126 | 3.36e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112690 | AT5G51180.2 | 71.875 | 352 | 96 | 2 | 2 | 352 | 6 | 355 | 0.0 | 539 |
| Msa0112690 | AT5G51180.1 | 71.875 | 352 | 96 | 2 | 2 | 352 | 6 | 355 | 0.0 | 539 |
| Msa0112690 | AT4G25770.1 | 52.991 | 351 | 156 | 6 | 8 | 352 | 69 | 416 | 3.27e-123 | 361 |
| Msa0112690 | AT4G25770.2 | 51.289 | 349 | 161 | 6 | 8 | 350 | 69 | 414 | 3.11e-116 | 343 |
| Msa0112690 | AT1G10040.1 | 48.870 | 354 | 159 | 5 | 14 | 352 | 64 | 410 | 5.36e-113 | 335 |
| Msa0112690 | AT1G10040.2 | 48.214 | 336 | 152 | 5 | 14 | 334 | 64 | 392 | 1.78e-104 | 313 |
| Msa0112690 | AT1G29120.1 | 40.517 | 348 | 186 | 3 | 23 | 350 | 94 | 440 | 4.35e-86 | 267 |
| Msa0112690 | AT1G29120.2 | 40.517 | 348 | 186 | 3 | 23 | 350 | 94 | 440 | 4.35e-86 | 267 |
| Msa0112690 | AT1G29120.8 | 40.517 | 348 | 186 | 3 | 23 | 350 | 95 | 441 | 5.26e-86 | 267 |
| Msa0112690 | AT1G29120.5 | 40.115 | 349 | 187 | 4 | 23 | 350 | 94 | 441 | 7.36e-83 | 259 |
| Msa0112690 | AT1G29120.7 | 40.356 | 337 | 180 | 3 | 23 | 339 | 94 | 429 | 1.15e-81 | 255 |
| Msa0112690 | AT1G29120.3 | 43.939 | 264 | 145 | 2 | 23 | 284 | 94 | 356 | 3.95e-73 | 232 |
| Msa0112690 | AT1G29120.4 | 43.939 | 264 | 145 | 2 | 23 | 284 | 94 | 356 | 6.37e-73 | 231 |
| Msa0112690 | AT1G29120.6 | 43.111 | 225 | 125 | 2 | 23 | 245 | 94 | 317 | 1.46e-60 | 197 |
Find 104 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAGACTTTACGCATATT+TGG | 0.190717 | 1_3:+27959061 | None:intergenic |
| CAAATCTCTGTCTGCTACTA+TGG | 0.221832 | 1_3:+27955527 | None:intergenic |
| TGCTGCTCATAGTGTAATTC+AGG | 0.244054 | 1_3:-27955506 | Msa0112690:intron |
| AAGTTCATTATTACGTCTAA+TGG | 0.252273 | 1_3:+27957016 | None:intergenic |
| AACTGTTGCTACACCTCATC+TGG | 0.300273 | 1_3:-27958885 | Msa0112690:CDS |
| CAATTCTTCACCTCAACTAA+TGG | 0.303591 | 1_3:+27955116 | None:intergenic |
| TGCTGACTCAATTACTTTCA+TGG | 0.310425 | 1_3:+27955013 | None:intergenic |
| CACCTTCCATATGTGAGATT+TGG | 0.316169 | 1_3:+27955355 | None:intergenic |
| GAAGAGATCGGGAAGGAAAA+AGG | 0.326840 | 1_3:+27960736 | None:intergenic |
| TTGCAAGTGTTGTTATTCAT+TGG | 0.328297 | 1_3:-27957404 | Msa0112690:CDS |
| TGGGAAATGAAGTCGGTGTT+TGG | 0.347341 | 1_3:+27960714 | None:intergenic |
| ACATCATCTATGTCAGAAAA+TGG | 0.353937 | 1_3:+27955307 | None:intergenic |
| TCGATGGAAGCCGCGATGTT+TGG | 0.354256 | 1_3:-27960626 | Msa0112690:CDS |
| CTTGCAGAGGAGCTGGTAAC+AGG | 0.354687 | 1_3:-27955589 | Msa0112690:intron |
| AACGAACCTATTCAGGATTC+AGG | 0.363980 | 1_3:-27958971 | Msa0112690:CDS |
| TCCTGAATAGGTTCGTTTCC+AGG | 0.365379 | 1_3:+27958977 | None:intergenic |
| GGAATGAAAATTCAGTAGAT+TGG | 0.367176 | 1_3:+27960694 | None:intergenic |
| GGAAGAAGAATCAGAGGATT+TGG | 0.376802 | 1_3:+27960599 | None:intergenic |
| TTATTGCCTGAATCCTGAAT+AGG | 0.376991 | 1_3:+27958965 | None:intergenic |
| TTCATTCCTCGTTGATCCTA+TGG | 0.380939 | 1_3:-27960679 | Msa0112690:exon |
| ACCTGGAAACGAACCTATTC+AGG | 0.394728 | 1_3:-27958978 | Msa0112690:CDS |
| ATGCTATTGGGAAGCTGTAT+AGG | 0.395975 | 1_3:-27959003 | Msa0112690:CDS |
| CTACACCTCATCTGGGGTCA+AGG | 0.407726 | 1_3:-27958877 | Msa0112690:CDS |
| ACATTCAGTTGGAGGATTAG+TGG | 0.411370 | 1_3:-27959032 | Msa0112690:CDS |
| TGTTAAAGAGCTTCCAGATA+AGG | 0.422694 | 1_3:-27960354 | Msa0112690:CDS |
| TTAGTGGCACGATATGCTAT+TGG | 0.426585 | 1_3:-27959016 | Msa0112690:CDS |
| CATCTTGTTGTCATGGTCAA+TGG | 0.429580 | 1_3:-27960570 | Msa0112690:CDS |
| TGTGACTTACTGAAAGATAA+TGG | 0.436010 | 1_3:-27956827 | Msa0112690:CDS |
| CTAGATGGTGTGGACGTAAT+GGG | 0.437976 | 1_3:-27959696 | Msa0112690:CDS |
| GAAAGTAAGGTGGACTCAAT+AGG | 0.438104 | 1_3:-27958941 | Msa0112690:CDS |
| CAAAGACCAAATCTCACATA+TGG | 0.440636 | 1_3:-27955361 | Msa0112690:CDS |
| GTTCTTGCAGTTCAAAGGAT+TGG | 0.440746 | 1_3:-27960397 | Msa0112690:intron |
| GAATGAAAATTCAGTAGATT+GGG | 0.448910 | 1_3:+27960695 | None:intergenic |
| CTCAATTACTTTCATGGAAG+GGG | 0.448966 | 1_3:+27955019 | None:intergenic |
| GGACGTAATGGGCGAGAGAT+TGG | 0.454747 | 1_3:-27959685 | Msa0112690:CDS |
| TTCAGGCAATAAAGAAAGTA+AGG | 0.457167 | 1_3:-27958954 | Msa0112690:CDS |
| TAGTGGCACGATATGCTATT+GGG | 0.457957 | 1_3:-27959015 | Msa0112690:CDS |
| ACTAGATGGTGTGGACGTAA+TGG | 0.463599 | 1_3:-27959697 | Msa0112690:CDS |
| GTGTCTAAGCATACACTAGA+TGG | 0.465275 | 1_3:-27959711 | Msa0112690:CDS |
| AACATCGCGGCTTCCATCGA+TGG | 0.466052 | 1_3:+27960629 | None:intergenic |
| CGCCGACCATCTTGTTGTCA+TGG | 0.471162 | 1_3:-27960577 | Msa0112690:CDS |
| GTCATGGTCAATGGAATTCT+CGG | 0.471929 | 1_3:-27960561 | Msa0112690:CDS |
| GGGGTCAAGGGGCAATAAGC+AGG | 0.473817 | 1_3:-27958864 | Msa0112690:intron |
| TTTATTTCACATTCAGTTGG+AGG | 0.476703 | 1_3:-27959040 | Msa0112690:CDS |
| TGTTTGTTCTTGCAGTTCAA+AGG | 0.477270 | 1_3:-27960402 | Msa0112690:intron |
| CATTGCGCTCTTTCAAACGT+CGG | 0.480963 | 1_3:-27957190 | Msa0112690:CDS |
| GTCGGTGTTTGGAAGAGATC+GGG | 0.482621 | 1_3:+27960725 | None:intergenic |
| CAGGTTTGTCTTCTGTGTCA+TGG | 0.483977 | 1_3:-27955570 | Msa0112690:CDS |
| AATGGCTCTGACAAGATAGA+AGG | 0.486489 | 1_3:-27956809 | Msa0112690:intron |
| TTCCTTCATCGTCATCGGTA+AGG | 0.488148 | 1_3:+27957352 | None:intergenic |
| ATTGCGCTCTTTCAAACGTC+GGG | 0.490034 | 1_3:-27957189 | Msa0112690:CDS |
| TCATTTATTTCACATTCAGT+TGG | 0.492843 | 1_3:-27959043 | Msa0112690:CDS |
| ATGAAAACTTGCAGAGGAGC+TGG | 0.494911 | 1_3:-27955596 | Msa0112690:intron |
| TTCCTTACCGATGACGATGA+AGG | 0.495815 | 1_3:-27957354 | Msa0112690:CDS |
| TGTTGCAGGATGGAAACAAC+CGG | 0.503853 | 1_3:-27955160 | Msa0112690:intron |
| AGGTTTGTCTTCTGTGTCAT+GGG | 0.507004 | 1_3:-27955569 | Msa0112690:CDS |
| ACATACATAATACATTGTTA+AGG | 0.508732 | 1_3:+27955073 | None:intergenic |
| TCAATCATGCGTTTGAGCAA+TGG | 0.509628 | 1_3:+27957324 | None:intergenic |
| TACACCTCATCTGGGGTCAA+GGG | 0.526067 | 1_3:-27958876 | Msa0112690:CDS |
| AATAGGTACAATATGTGGCC+TGG | 0.533865 | 1_3:-27958924 | Msa0112690:CDS |
| ACAAAATTCTCCATTAGTTG+AGG | 0.537109 | 1_3:-27955126 | Msa0112690:three_prime_UTR |
| GACTCAATTACTTTCATGGA+AGG | 0.538661 | 1_3:+27955017 | None:intergenic |
| AAACTTAAGATATCGTTGGC+TGG | 0.544097 | 1_3:-27957049 | Msa0112690:intron |
| ACTGTTGCTACACCTCATCT+GGG | 0.546236 | 1_3:-27958884 | Msa0112690:CDS |
| TCGGGTTATATATTCAAATG+TGG | 0.550231 | 1_3:-27957171 | Msa0112690:CDS |
| ATTGAACTCTTAGGTCATTG+AGG | 0.551531 | 1_3:-27959098 | Msa0112690:intron |
| AGTCGGTGTTTGGAAGAGAT+CGG | 0.556225 | 1_3:+27960724 | None:intergenic |
| TGCTCTTCATATACAACATG+TGG | 0.557368 | 1_3:+27956875 | None:intergenic |
| TTGCCCCTTGACCCCAGATG+AGG | 0.558459 | 1_3:+27958872 | None:intergenic |
| TAGCAATATAAGCTTTGCAA+AGG | 0.559858 | 1_3:-27955256 | Msa0112690:intron |
| ATGTGTATGATATGTAGATC+AGG | 0.563849 | 1_3:-27955050 | Msa0112690:three_prime_UTR |
| CGGGTTATATATTCAAATGT+GGG | 0.568217 | 1_3:-27957170 | Msa0112690:CDS |
| TTACGAAATTCATTGCCTCC+AGG | 0.577026 | 1_3:+27958906 | None:intergenic |
| ACTCAATTACTTTCATGGAA+GGG | 0.578158 | 1_3:+27955018 | None:intergenic |
| CGCATGATTGAAGACTATGA+TGG | 0.582406 | 1_3:-27957312 | Msa0112690:CDS |
| GACTCAATAGGTACAATATG+TGG | 0.583136 | 1_3:-27958929 | Msa0112690:CDS |
| ATCATGCGTTTGAGCAATGG+AGG | 0.583660 | 1_3:+27957327 | None:intergenic |
| GGGAAGCTGTATAGGCCACC+TGG | 0.595506 | 1_3:-27958995 | Msa0112690:CDS |
| GGGCGAGAGATTGGCAGAGG+AGG | 0.597828 | 1_3:-27959676 | Msa0112690:intron |
| GACCATGACAACAAGATGGT+CGG | 0.605131 | 1_3:+27960575 | None:intergenic |
| GACCAAATCTCACATATGGA+AGG | 0.605327 | 1_3:-27955357 | Msa0112690:CDS |
| AAAGGATTGGAAATTTGCGT+CGG | 0.611436 | 1_3:-27960384 | Msa0112690:CDS |
| AATGGGCGAGAGATTGGCAG+AGG | 0.611661 | 1_3:-27959679 | Msa0112690:CDS |
| CATCGGTAAGGAAAAGATGC+CGG | 0.614066 | 1_3:+27957364 | None:intergenic |
| ACGTAATAATGAACTTCCAA+AGG | 0.614206 | 1_3:-27957009 | Msa0112690:intron |
| ACACCTCATCTGGGGTCAAG+GGG | 0.616689 | 1_3:-27958875 | Msa0112690:CDS |
| CACACATCGTTCTTCTCCAT+AGG | 0.619034 | 1_3:+27960663 | None:intergenic |
| AGTAGATTGGGAAATGAAGT+CGG | 0.619814 | 1_3:+27960707 | None:intergenic |
| GTCGGCGGAAGAAGAATCAG+AGG | 0.622314 | 1_3:+27960593 | None:intergenic |
| TGCACATCGGAATCCATCGA+TGG | 0.622851 | 1_3:-27960642 | Msa0112690:CDS |
| GCAACAATATTATCATAATG+TGG | 0.629097 | 1_3:-27954942 | Msa0112690:three_prime_UTR |
| TGTATATGAAGAGCATTGCA+AGG | 0.629600 | 1_3:-27956867 | Msa0112690:CDS |
| TAAGCATACACTAGATGGTG+TGG | 0.631739 | 1_3:-27959706 | Msa0112690:CDS |
| CATTGACCATGACAACAAGA+TGG | 0.636800 | 1_3:+27960571 | None:intergenic |
| TGGTCAATGGAATTCTCGGA+AGG | 0.650694 | 1_3:-27960557 | Msa0112690:intron |
| AGGCAATAAAGAAAGTAAGG+TGG | 0.653905 | 1_3:-27958951 | Msa0112690:CDS |
| GAAGAACGATGTGTGCACAT+CGG | 0.677135 | 1_3:-27960655 | Msa0112690:CDS |
| CATGACAACAAGATGGTCGG+CGG | 0.691898 | 1_3:+27960578 | None:intergenic |
| TGAATAGGTTCGTTTCCAGG+TGG | 0.692678 | 1_3:+27958980 | None:intergenic |
| AGGTACAATATGTGGCCTGG+AGG | 0.694202 | 1_3:-27958921 | Msa0112690:CDS |
| CTGTTGCTACACCTCATCTG+GGG | 0.704440 | 1_3:-27958883 | Msa0112690:CDS |
| GTGTTTGGAAGAGATCGGGA+AGG | 0.712651 | 1_3:+27960729 | None:intergenic |
| ATTTGGAACTCCAAACATCG+CGG | 0.732445 | 1_3:+27960616 | None:intergenic |
| TCTTCTCCATAGGATCAACG+AGG | 0.827529 | 1_3:+27960673 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAACAATTAAAATAAAA+TGG | + | chr1_3:27957143-27957162 | None:intergenic | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_3:27957615-27957634 | Msa0112690:intron | 10.0% |
| !! | GTAATTTATATTAATATGTA+AGG | - | chr1_3:27957674-27957693 | Msa0112690:intron | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_3:27957615-27957634 | Msa0112690:intron | 10.0% |
| !! | ATATAAAAAGAATTTAACAT+GGG | + | chr1_3:27958418-27958437 | None:intergenic | 10.0% |
| !! | AATATAAAAAGAATTTAACA+TGG | + | chr1_3:27958419-27958438 | None:intergenic | 10.0% |
| !!! | TGTTAAATTCTTTTTATATT+TGG | - | chr1_3:27958419-27958438 | Msa0112690:intron | 10.0% |
| !!! | ATTGTTATTTATTTTTTTAG+AGG | - | chr1_3:27959963-27959982 | Msa0112690:intron | 10.0% |
| !!! | AAAAAAATCTTTTGTTTACT+CGG | - | chr1_3:27955701-27955720 | Msa0112690:intron | 15.0% |
| !! | TATAATATATGTGACTAATA+AGG | + | chr1_3:27956105-27956124 | None:intergenic | 15.0% |
| !!! | TAATATACTGTTTTATTTGA+AGG | + | chr1_3:27956460-27956479 | None:intergenic | 15.0% |
| !!! | TATTTTAATTGTTTTTCTTC+TGG | - | chr1_3:27957146-27957165 | Msa0112690:intron | 15.0% |
| !! | ATCATTATGAAGATAATATT+AGG | + | chr1_3:27957219-27957238 | None:intergenic | 15.0% |
| !! | TAGAAAATTATAGATAAATG+TGG | - | chr1_3:27957346-27957365 | Msa0112690:CDS | 15.0% |
| !! | TTCATGTAAATTAATATGTA+AGG | - | chr1_3:27957550-27957569 | Msa0112690:intron | 15.0% |
| !! | TCATGTAAATTAATATGTAA+GGG | - | chr1_3:27957551-27957570 | Msa0112690:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_3:27957588-27957607 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_3:27957642-27957661 | Msa0112690:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_3:27957588-27957607 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_3:27957642-27957661 | Msa0112690:intron | 15.0% |
| !! | CAAATAAAAATATATGCAAT+AGG | + | chr1_3:27958594-27958613 | None:intergenic | 15.0% |
| !!! | CTATTGCATATATTTTTATT+TGG | - | chr1_3:27958592-27958611 | Msa0112690:intron | 15.0% |
| !!! | CATTTGTTTTAAGAAAAATA+TGG | + | chr1_3:27958899-27958918 | None:intergenic | 15.0% |
| !!! | TGTACATTTTAAATGATATA+TGG | - | chr1_3:27958954-27958973 | Msa0112690:CDS | 15.0% |
| !!! | TTATTTTGATGTAATCTAAT+TGG | - | chr1_3:27960713-27960732 | Msa0112690:five_prime_UTR | 15.0% |
| !! | AGAATTAATAAAAACTATCA+AGG | - | chr1_3:27960763-27960782 | Msa0112690:five_prime_UTR | 15.0% |
| !!! | GTTTTTGATTTATTTTGCTT+TGG | - | chr1_3:27955166-27955185 | Msa0112690:intron | 20.0% |
| !!! | GATGTATTTGTTATTGTAAT+TGG | - | chr1_3:27955193-27955212 | Msa0112690:intron | 20.0% |
| !!! | ATTGAAATTTTGAGATTTTG+TGG | - | chr1_3:27955216-27955235 | Msa0112690:intron | 20.0% |
| !! | TAATAAGGCAATATAATCTA+TGG | + | chr1_3:27956090-27956109 | None:intergenic | 20.0% |
| !!! | TATTTCTATCAAGTATTAAC+AGG | - | chr1_3:27956554-27956573 | Msa0112690:intron | 20.0% |
| !! | TTATTTACTGTATGAAAGAA+AGG | + | chr1_3:27957043-27957062 | None:intergenic | 20.0% |
| !! | TTCTTTCATACAGTAAATAA+AGG | - | chr1_3:27957043-27957062 | Msa0112690:CDS | 20.0% |
| !! | AAATTTCCCAAATTATTTAC+TGG | - | chr1_3:27957072-27957091 | Msa0112690:intron | 20.0% |
| !! | ACAAAACCAGTAAATAATTT+GGG | + | chr1_3:27957081-27957100 | None:intergenic | 20.0% |
| !!! | CAATTTCTCAAATTATTTTC+TGG | - | chr1_3:27957101-27957120 | Msa0112690:intron | 20.0% |
| !!! | ATCCTATATCTTTTATTCTT+CGG | - | chr1_3:27957512-27957531 | Msa0112690:intron | 20.0% |
| !! | GTTATATTATATTCAACTAG+CGG | - | chr1_3:27958073-27958092 | Msa0112690:intron | 20.0% |
| !!! | AGTATTTAAACTTGTTGATT+GGG | - | chr1_3:27958200-27958219 | Msa0112690:intron | 20.0% |
| !!! | GATATCTTAAGTTTTTATGA+AGG | + | chr1_3:27958622-27958641 | None:intergenic | 20.0% |
| !! | ATAAAAACTTAAGATATCGT+TGG | - | chr1_3:27958624-27958643 | Msa0112690:intron | 20.0% |
| !! | AATATCACTAAATATACCTT+TGG | + | chr1_3:27958687-27958706 | None:intergenic | 20.0% |
| !!! | ATACTGTTTTTCTAGTTATA+TGG | - | chr1_3:27959179-27959198 | Msa0112690:intron | 20.0% |
| !! | TTATAAGATCTATTAGGAAT+GGG | + | chr1_3:27959600-27959619 | None:intergenic | 20.0% |
| !!! | AGATATTGTGTGATTTTTTT+TGG | - | chr1_3:27959659-27959678 | Msa0112690:intron | 20.0% |
| !!! | TAATTATTTTACATTACTCG+CGG | + | chr1_3:27959829-27959848 | None:intergenic | 20.0% |
| !!! | TTTTTATAATGACAACTTTC+TGG | - | chr1_3:27959855-27959874 | Msa0112690:intron | 20.0% |
| !! | AATAAAATCGTGTCATATTA+AGG | + | chr1_3:27959946-27959965 | None:intergenic | 20.0% |
| !! | TCAATCAGGTTTATAATATA+TGG | + | chr1_3:27960466-27960485 | None:intergenic | 20.0% |
| !! | ACATACATAATACATTGTTA+AGG | + | chr1_3:27960607-27960626 | None:intergenic | 20.0% |
| ! | GAATGAAAATTCAGTAGATT+GGG | + | chr1_3:27954985-27955004 | None:intergenic | 25.0% |
| !!! | TTTCTCTTTGATTTCTTTTC+TGG | - | chr1_3:27955370-27955389 | Msa0112690:intron | 25.0% |
| ! | ATAAAAAACGGACATACAAT+TGG | + | chr1_3:27955496-27955515 | None:intergenic | 25.0% |
| ! | ATTCCGAATGAGATAAAAAA+CGG | + | chr1_3:27955508-27955527 | None:intergenic | 25.0% |
| ! | GAATTTACTATATCTTCACT+AGG | - | chr1_3:27956056-27956075 | Msa0112690:intron | 25.0% |
| ! | CACTTATGAATATCTTATCA+AGG | + | chr1_3:27956236-27956255 | None:intergenic | 25.0% |
| ! | GATATTCATAAGTGATGTAT+AGG | - | chr1_3:27956242-27956261 | Msa0112690:intron | 25.0% |
| ! | GTTATTATCAACCAATACAA+AGG | + | chr1_3:27956278-27956297 | None:intergenic | 25.0% |
| !!! | GATACTTCAAATTTGCTAAA+GGG | + | chr1_3:27956335-27956354 | None:intergenic | 25.0% |
| !!! | AGATACTTCAAATTTGCTAA+AGG | + | chr1_3:27956336-27956355 | None:intergenic | 25.0% |
| !! | TTTAGCAAATTTGAAGTATC+TGG | - | chr1_3:27956335-27956354 | Msa0112690:intron | 25.0% |
| !! | TTAGCAAATTTGAAGTATCT+GGG | - | chr1_3:27956336-27956355 | Msa0112690:intron | 25.0% |
| ! | GAAATTCGTCATTTCAAATA+AGG | - | chr1_3:27956374-27956393 | Msa0112690:intron | 25.0% |
| ! | AATTACTTTCTGACATATGT+TGG | - | chr1_3:27956406-27956425 | Msa0112690:intron | 25.0% |
| ! | TCATTTATTTCACATTCAGT+TGG | - | chr1_3:27956634-27956653 | Msa0112690:intron | 25.0% |
| ! | TAATTCTTAAGATGCAATGT+TGG | + | chr1_3:27956841-27956860 | None:intergenic | 25.0% |
| ! | GACAAAACCAGTAAATAATT+TGG | + | chr1_3:27957082-27957101 | None:intergenic | 25.0% |
| !!! | TAATTGTTTTTCTTCTGGAA+CGG | - | chr1_3:27957151-27957170 | Msa0112690:intron | 25.0% |
| ! | TGAAGATAATATTAGGATCA+TGG | + | chr1_3:27957212-27957231 | None:intergenic | 25.0% |
| ! | CATTAGTGAATCAAAATAGT+AGG | - | chr1_3:27957287-27957306 | Msa0112690:intron | 25.0% |
| ! | AAGAGCAAGACTTAAAATAA+AGG | + | chr1_3:27957443-27957462 | None:intergenic | 25.0% |
| ! | AACCGAAGAATAAAAGATAT+AGG | + | chr1_3:27957517-27957536 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_3:27957578-27957597 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_3:27957578-27957597 | None:intergenic | 25.0% |
| ! | AAAAAAACAACGTATAGTGA+GGG | + | chr1_3:27957899-27957918 | None:intergenic | 25.0% |
| !!! | TTTACATCAAAAGCATTAGA+TGG | - | chr1_3:27958051-27958070 | Msa0112690:intron | 25.0% |
| ! | AAGATTTCATGTTCATTTGA+TGG | + | chr1_3:27958126-27958145 | None:intergenic | 25.0% |
| !!! | GAGTATTTAAACTTGTTGAT+TGG | - | chr1_3:27958199-27958218 | Msa0112690:intron | 25.0% |
| !!! | TCATTGGATTTTTAGAAGAA+CGG | - | chr1_3:27958289-27958308 | Msa0112690:intron | 25.0% |
| ! | AACATGACATAATCATTTGA+AGG | + | chr1_3:27958454-27958473 | None:intergenic | 25.0% |
| ! | GAAACATGTAATAGATATGA+AGG | + | chr1_3:27958545-27958564 | None:intergenic | 25.0% |
| ! | AAGTTCATTATTACGTCTAA+TGG | + | chr1_3:27958664-27958683 | None:intergenic | 25.0% |
| ! | TTTAGTGATGTACATCTATT+TGG | - | chr1_3:27958745-27958764 | Msa0112690:intron | 25.0% |
| !! | ATGTGGATATTTTTCATTGA+GGG | + | chr1_3:27958788-27958807 | None:intergenic | 25.0% |
| ! | TATATGAAAGAGGAAAACAA+TGG | + | chr1_3:27959060-27959079 | None:intergenic | 25.0% |
| ! | TTCATATAATCGTTGACAAT+TGG | - | chr1_3:27959072-27959091 | Msa0112690:CDS | 25.0% |
| ! | TGGTTCTTTCTACATTATTA+TGG | - | chr1_3:27959092-27959111 | Msa0112690:intron | 25.0% |
| ! | TTATCATAACTTTACCCATT+TGG | - | chr1_3:27959307-27959326 | Msa0112690:intron | 25.0% |
| ! | TATCATAACTTTACCCATTT+GGG | - | chr1_3:27959308-27959327 | Msa0112690:intron | 25.0% |
| ! | CTTATAAGATCTATTAGGAA+TGG | + | chr1_3:27959601-27959620 | None:intergenic | 25.0% |
| !! | TTGTTATTGTCATTGAATGT+TGG | - | chr1_3:27959994-27960013 | Msa0112690:intron | 25.0% |
| ! | CATATTTGACACATTAGAAA+GGG | + | chr1_3:27960213-27960232 | None:intergenic | 25.0% |
| ! | AAAATTGAACGTTATCAATC+AGG | + | chr1_3:27960480-27960499 | None:intergenic | 25.0% |
| !! | TCAGCACATTTTATTATTGA+TGG | - | chr1_3:27960681-27960700 | Msa0112690:exon | 25.0% |
| ! | GCAACAATATTATCATAATG+TGG | - | chr1_3:27960735-27960754 | Msa0112690:five_prime_UTR | 25.0% |
| GGAATGAAAATTCAGTAGAT+TGG | + | chr1_3:27954986-27955005 | None:intergenic | 30.0% | |
| !!! | TGTCCGTTTTTTATCTCATT+CGG | - | chr1_3:27955502-27955521 | Msa0112690:intron | 30.0% |
| GCACTTTGCATATCATTATT+CGG | - | chr1_3:27955557-27955576 | Msa0112690:CDS | 30.0% | |
| TTGCATATCATTATTCGGTA+TGG | - | chr1_3:27955562-27955581 | Msa0112690:CDS | 30.0% | |
| ! | TCAGTAATCTAGTTCATACT+TGG | - | chr1_3:27955600-27955619 | Msa0112690:intron | 30.0% |
| AATACAAGGTTCTATTGCAA+AGG | + | chr1_3:27955737-27955756 | None:intergenic | 30.0% | |
| ! | CTTTCTAGCACATAAATACA+AGG | + | chr1_3:27955751-27955770 | None:intergenic | 30.0% |
| GTACAAACAACAATTTCTTG+TGG | - | chr1_3:27955772-27955791 | Msa0112690:intron | 30.0% | |
| ACAATTTCTTGTGGTTTAAG+TGG | - | chr1_3:27955781-27955800 | Msa0112690:intron | 30.0% | |
| TCATCATCATCTATAGAACA+CGG | + | chr1_3:27956137-27956156 | None:intergenic | 30.0% | |
| TAACAGGAAATTGAACTCTT+AGG | - | chr1_3:27956570-27956589 | Msa0112690:intron | 30.0% | |
| AATGAGACTTTACGCATATT+TGG | + | chr1_3:27956619-27956638 | None:intergenic | 30.0% | |
| TTTATTTCACATTCAGTTGG+AGG | - | chr1_3:27956637-27956656 | Msa0112690:intron | 30.0% | |
| TTCAGGCAATAAAGAAAGTA+AGG | - | chr1_3:27956723-27956742 | Msa0112690:intron | 30.0% | |
| CACTAGACTAATGAAACATA+AGG | + | chr1_3:27956864-27956883 | None:intergenic | 30.0% | |
| ! | ATGTTTCATTAGTCTAGTGA+TGG | - | chr1_3:27956865-27956884 | Msa0112690:CDS | 30.0% |
| ! | TGTTTCATTAGTCTAGTGAT+GGG | - | chr1_3:27956866-27956885 | Msa0112690:CDS | 30.0% |
| ! | TTCTCTCTAAAAAGCTATAC+AGG | - | chr1_3:27956999-27957018 | Msa0112690:intron | 30.0% |
| TAGTGAATCAAAATAGTAGG+AGG | - | chr1_3:27957290-27957309 | Msa0112690:intron | 30.0% | |
| ATAGATAAATGTGGCTAATG+CGG | - | chr1_3:27957355-27957374 | Msa0112690:CDS | 30.0% | |
| TACCCAAAGTCAATCATAAA+GGG | - | chr1_3:27957476-27957495 | Msa0112690:intron | 30.0% | |
| ! | AACCCTTTATGATTGACTTT+GGG | + | chr1_3:27957481-27957500 | None:intergenic | 30.0% |
| ATTCTTCGGTTTCATTTCTT+CGG | - | chr1_3:27957526-27957545 | Msa0112690:intron | 30.0% | |
| ! | ATCAGTTTTTCTCATTTGTC+CGG | - | chr1_3:27957813-27957832 | Msa0112690:intron | 30.0% |
| GAAAAAAACAACGTATAGTG+AGG | + | chr1_3:27957900-27957919 | None:intergenic | 30.0% | |
| GACTCTTATAATCTCTTTCT+TGG | - | chr1_3:27957923-27957942 | Msa0112690:intron | 30.0% | |
| !!! | TTGATTGGGTTTTGAATTTC+AGG | - | chr1_3:27958214-27958233 | Msa0112690:intron | 30.0% |
| !!! | TTTCAGGTTCCATTTCTTTT+TGG | - | chr1_3:27958230-27958249 | Msa0112690:intron | 30.0% |
| !! | TTCAGGTTCCATTTCTTTTT+GGG | - | chr1_3:27958231-27958250 | Msa0112690:intron | 30.0% |
| ! | TTGCAAGTGTTGTTATTCAT+TGG | - | chr1_3:27958273-27958292 | Msa0112690:intron | 30.0% |
| !! | CATTGGATTTTTAGAAGAAC+GGG | - | chr1_3:27958290-27958309 | Msa0112690:intron | 30.0% |
| TCGGGTTATATATTCAAATG+TGG | - | chr1_3:27958506-27958525 | Msa0112690:intron | 30.0% | |
| CGGGTTATATATTCAAATGT+GGG | - | chr1_3:27958507-27958526 | Msa0112690:intron | 30.0% | |
| ACGTAATAATGAACTTCCAA+AGG | - | chr1_3:27958668-27958687 | Msa0112690:intron | 30.0% | |
| ! | CATGTGGATATTTTTCATTG+AGG | + | chr1_3:27958789-27958808 | None:intergenic | 30.0% |
| TGTGACTTACTGAAAGATAA+TGG | - | chr1_3:27958850-27958869 | Msa0112690:intron | 30.0% | |
| TGTCAACGATTATATGAAAG+AGG | + | chr1_3:27959070-27959089 | None:intergenic | 30.0% | |
| AAAAACAGTATTGCAAAGGA+AGG | + | chr1_3:27959170-27959189 | None:intergenic | 30.0% | |
| CTAGAAAAACAGTATTGCAA+AGG | + | chr1_3:27959174-27959193 | None:intergenic | 30.0% | |
| ! | TAGAATCTTGCTTTAGGTTA+CGG | + | chr1_3:27959267-27959286 | None:intergenic | 30.0% |
| TAACACTTATCATGTAACGA+TGG | + | chr1_3:27959290-27959309 | None:intergenic | 30.0% | |
| ATCATAACTTTACCCATTTG+GGG | - | chr1_3:27959309-27959328 | Msa0112690:intron | 30.0% | |
| TCTTTACCGAACATATGATT+CGG | - | chr1_3:27959572-27959591 | Msa0112690:intron | 30.0% | |
| ACGCTCTTATAAGATCTATT+AGG | + | chr1_3:27959606-27959625 | None:intergenic | 30.0% | |
| ! | AATAGATCTTATAAGAGCGT+AGG | - | chr1_3:27959606-27959625 | Msa0112690:intron | 30.0% |
| !! | ATAATGACAACTTTCTGGTT+AGG | - | chr1_3:27959860-27959879 | Msa0112690:intron | 30.0% |
| ATCGATCAATGAACACTAAT+GGG | + | chr1_3:27959913-27959932 | None:intergenic | 30.0% | |
| AATCGATCAATGAACACTAA+TGG | + | chr1_3:27959914-27959933 | None:intergenic | 30.0% | |
| CGAAATGTAAGATTTCTAAC+TGG | - | chr1_3:27960057-27960076 | Msa0112690:intron | 30.0% | |
| CCATATTTGACACATTAGAA+AGG | + | chr1_3:27960214-27960233 | None:intergenic | 30.0% | |
| CCTTTCTAATGTGTCAAATA+TGG | - | chr1_3:27960211-27960230 | Msa0112690:intron | 30.0% | |
| AAAAGATCGAGAAAGAATAG+AGG | + | chr1_3:27960280-27960299 | None:intergenic | 30.0% | |
| !!! | GATCTTTTCTTGCTATTTAC+AGG | - | chr1_3:27960292-27960311 | Msa0112690:intron | 30.0% |
| ACATCATCTATGTCAGAAAA+TGG | + | chr1_3:27960373-27960392 | None:intergenic | 30.0% | |
| TAGCAATATAAGCTTTGCAA+AGG | - | chr1_3:27960421-27960440 | Msa0112690:intron | 30.0% | |
| TTGCAAAGGTAAATCTGAAA+TGG | - | chr1_3:27960435-27960454 | Msa0112690:intron | 30.0% | |
| !! | TGAAATTGTGAATTTGTTGC+AGG | - | chr1_3:27960503-27960522 | Msa0112690:intron | 30.0% |
| ! | AATTTTGTTACTCAGGAAAC+CGG | + | chr1_3:27960539-27960558 | None:intergenic | 30.0% |
| ! | AATGGAGAATTTTGTTACTC+AGG | + | chr1_3:27960546-27960565 | None:intergenic | 30.0% |
| ACAAAATTCTCCATTAGTTG+AGG | - | chr1_3:27960551-27960570 | Msa0112690:intron | 30.0% | |
| ATGTGTATGATATGTAGATC+AGG | - | chr1_3:27960627-27960646 | Msa0112690:CDS | 30.0% | |
| ACTCAATTACTTTCATGGAA+GGG | + | chr1_3:27960662-27960681 | None:intergenic | 30.0% | |
| ! | AGGAATTGGAGTTTTCTTTC+CGG | + | chr1_3:27954924-27954943 | None:intergenic | 35.0% |
| AGTAGATTGGGAAATGAAGT+CGG | + | chr1_3:27954973-27954992 | None:intergenic | 35.0% | |
| !!! | TTCTCGGAAGGTATTGATTT+TGG | - | chr1_3:27955132-27955151 | Msa0112690:three_prime_UTR | 35.0% |
| TGTTTGTTCTTGCAGTTCAA+AGG | - | chr1_3:27955275-27955294 | Msa0112690:three_prime_UTR | 35.0% | |
| AAAGGATTGGAAATTTGCGT+CGG | - | chr1_3:27955293-27955312 | Msa0112690:three_prime_UTR | 35.0% | |
| TGTTAAAGAGCTTCCAGATA+AGG | - | chr1_3:27955323-27955342 | Msa0112690:CDS | 35.0% | |
| CAGTGAACAAAAACCTTATC+TGG | + | chr1_3:27955339-27955358 | None:intergenic | 35.0% | |
| ! | CTTGGTGCAATTGTAGTTTA+AGG | - | chr1_3:27955618-27955637 | Msa0112690:intron | 35.0% |
| TTTGTTTACTCGGAATTCGA+CGG | - | chr1_3:27955711-27955730 | Msa0112690:intron | 35.0% | |
| TTTGGACATCCTTCTTTCTT+GGG | - | chr1_3:27955821-27955840 | Msa0112690:intron | 35.0% | |
| TGAGTTATATTGTCCAGTGT+GGG | - | chr1_3:27955879-27955898 | Msa0112690:intron | 35.0% | |
| TTTCTCATCTTCTTTCACTC+AGG | - | chr1_3:27955930-27955949 | Msa0112690:intron | 35.0% | |
| GTTATGCTTTACTAGTCACA+GGG | + | chr1_3:27956189-27956208 | None:intergenic | 35.0% | |
| !! | CTACAAAGAAAAGTGTCAAC+AGG | + | chr1_3:27956211-27956230 | None:intergenic | 35.0% |
| GAAAACAGAGTCCTTTGTAT+TGG | - | chr1_3:27956264-27956283 | Msa0112690:intron | 35.0% | |
| !! | TTCAAATTTGCTAAAGGGTG+TGG | + | chr1_3:27956330-27956349 | None:intergenic | 35.0% |
| TTTCTGACATATGTTGGAGA+TGG | - | chr1_3:27956412-27956431 | Msa0112690:intron | 35.0% | |
| ATTGAACTCTTAGGTCATTG+AGG | - | chr1_3:27956579-27956598 | Msa0112690:intron | 35.0% | |
| TTATTGCCTGAATCCTGAAT+AGG | + | chr1_3:27956715-27956734 | None:intergenic | 35.0% | |
| AGGCAATAAAGAAAGTAAGG+TGG | - | chr1_3:27956726-27956745 | Msa0112690:intron | 35.0% | |
| GACTCAATAGGTACAATATG+TGG | - | chr1_3:27956748-27956767 | Msa0112690:intron | 35.0% | |
| ! | GTTTCATTAGTCTAGTGATG+GGG | - | chr1_3:27956867-27956886 | Msa0112690:CDS | 35.0% |
| ATGGGGATTAAAGAGACTAT+TGG | - | chr1_3:27956884-27956903 | Msa0112690:CDS | 35.0% | |
| ! | AAAGGACTTGACTAGTTCAA+AGG | + | chr1_3:27957025-27957044 | None:intergenic | 35.0% |
| TAATGACACTAGATATGCAC+TGG | + | chr1_3:27957272-27957291 | None:intergenic | 35.0% | |
| CAGTATTACGTTGCAATCTT+TGG | - | chr1_3:27957318-27957337 | Msa0112690:CDS | 35.0% | |
| AGCCTTAAAACCTAATGTTG+TGG | - | chr1_3:27957398-27957417 | Msa0112690:CDS | 35.0% | |
| GTACCCAAAGTCAATCATAA+AGG | - | chr1_3:27957475-27957494 | Msa0112690:intron | 35.0% | |
| ! | CAACCCTTTATGATTGACTT+TGG | + | chr1_3:27957482-27957501 | None:intergenic | 35.0% |
| CAAAGTCAATCATAAAGGGT+TGG | - | chr1_3:27957480-27957499 | Msa0112690:intron | 35.0% | |
| TTAGAGCGAATGACAGTTTA+TGG | - | chr1_3:27957958-27957977 | Msa0112690:intron | 35.0% | |
| TAGAGCGAATGACAGTTTAT+GGG | - | chr1_3:27957959-27957978 | Msa0112690:intron | 35.0% | |
| !! | ATGGGTTTGGTTTGATAGAT+TGG | - | chr1_3:27957977-27957996 | Msa0112690:intron | 35.0% |
| ! | TCAGGTTCCATTTCTTTTTG+GGG | - | chr1_3:27958232-27958251 | Msa0112690:intron | 35.0% |
| ! | GATTATGTCATGTTTTGTGC+AGG | - | chr1_3:27958460-27958479 | Msa0112690:intron | 35.0% |
| AAACTTAAGATATCGTTGGC+TGG | - | chr1_3:27958628-27958647 | Msa0112690:intron | 35.0% | |
| GTGATGTACATCTATTTGGT+TGG | - | chr1_3:27958749-27958768 | Msa0112690:intron | 35.0% | |
| !! | TACATCTATTTGGTTGGTAG+TGG | - | chr1_3:27958755-27958774 | Msa0112690:intron | 35.0% |
| !! | ACATCTATTTGGTTGGTAGT+GGG | - | chr1_3:27958756-27958775 | Msa0112690:intron | 35.0% |
| TGCTCTTCATATACAACATG+TGG | + | chr1_3:27958805-27958824 | None:intergenic | 35.0% | |
| !! | TGTATATGAAGAGCATTGCA+AGG | - | chr1_3:27958810-27958829 | Msa0112690:intron | 35.0% |
| TGAAAGAGGAAAACAATGGA+AGG | + | chr1_3:27959056-27959075 | None:intergenic | 35.0% | |
| ! | GGTGTTCTGAATAACTCTTT+AGG | - | chr1_3:27959627-27959646 | Msa0112690:intron | 35.0% |
| GTTAGGAGATACCATCAAAA+TGG | - | chr1_3:27959877-27959896 | Msa0112690:intron | 35.0% | |
| ! | GTGTTCATTGATCGATTCAT+AGG | - | chr1_3:27959917-27959936 | Msa0112690:intron | 35.0% |
| ! | TTCATTGATCGATTCATAGG+TGG | - | chr1_3:27959920-27959939 | Msa0112690:intron | 35.0% |
| TTGGACAATATAGTCATGCA+TGG | - | chr1_3:27960013-27960032 | Msa0112690:intron | 35.0% | |
| CAAAGACCAAATCTCACATA+TGG | - | chr1_3:27960316-27960335 | Msa0112690:intron | 35.0% | |
| !! | ATTGTGAATTTGTTGCAGGA+TGG | - | chr1_3:27960507-27960526 | Msa0112690:intron | 35.0% |
| CAATTCTTCACCTCAACTAA+TGG | + | chr1_3:27960564-27960583 | None:intergenic | 35.0% | |
| CTCAATTACTTTCATGGAAG+GGG | + | chr1_3:27960661-27960680 | None:intergenic | 35.0% | |
| GACTCAATTACTTTCATGGA+AGG | + | chr1_3:27960663-27960682 | None:intergenic | 35.0% | |
| !! | TGCTGACTCAATTACTTTCA+TGG | + | chr1_3:27960667-27960686 | None:intergenic | 35.0% |
| ! | GGAATTGGAGTTTTCTTTCC+GGG | + | chr1_3:27954923-27954942 | None:intergenic | 40.0% |
| ATCGGGAAGGAAAAAGGAAT+TGG | + | chr1_3:27954938-27954957 | None:intergenic | 40.0% | |
| TTCATTCCTCGTTGATCCTA+TGG | - | chr1_3:27954998-27955017 | Msa0112690:three_prime_UTR | 40.0% | |
| ! | ATTTGGAACTCCAAACATCG+CGG | + | chr1_3:27955064-27955083 | None:intergenic | 40.0% |
| GGAAGAAGAATCAGAGGATT+TGG | + | chr1_3:27955081-27955100 | None:intergenic | 40.0% | |
| CATTGACCATGACAACAAGA+TGG | + | chr1_3:27955109-27955128 | None:intergenic | 40.0% | |
| ! | CATCTTGTTGTCATGGTCAA+TGG | - | chr1_3:27955107-27955126 | Msa0112690:three_prime_UTR | 40.0% |
| GTCATGGTCAATGGAATTCT+CGG | - | chr1_3:27955116-27955135 | Msa0112690:three_prime_UTR | 40.0% | |
| GTTCTTGCAGTTCAAAGGAT+TGG | - | chr1_3:27955280-27955299 | Msa0112690:three_prime_UTR | 40.0% | |
| ! | TGCAAAGTGCTAAGACACTA+AGG | + | chr1_3:27955547-27955566 | None:intergenic | 40.0% |
| ATGTCCAAAGCTTGTCAACT+CGG | + | chr1_3:27955810-27955829 | None:intergenic | 40.0% | |
| CTTTGGACATCCTTCTTTCT+TGG | - | chr1_3:27955820-27955839 | Msa0112690:intron | 40.0% | |
| TTGGACATCCTTCTTTCTTG+GGG | - | chr1_3:27955822-27955841 | Msa0112690:intron | 40.0% | |
| CTGAGTTATATTGTCCAGTG+TGG | - | chr1_3:27955878-27955897 | Msa0112690:intron | 40.0% | |
| ! | ACAGAATTTAAAGCCCACAC+TGG | + | chr1_3:27955895-27955914 | None:intergenic | 40.0% |
| GTGTCTAAGCATACACTAGA+TGG | - | chr1_3:27955966-27955985 | Msa0112690:intron | 40.0% | |
| TAAGCATACACTAGATGGTG+TGG | - | chr1_3:27955971-27955990 | Msa0112690:intron | 40.0% | |
| GGTTATGCTTTACTAGTCAC+AGG | + | chr1_3:27956190-27956209 | None:intergenic | 40.0% | |
| ! | TTGAAGTATCTGGGCTTCAT+TGG | - | chr1_3:27956345-27956364 | Msa0112690:intron | 40.0% |
| ACATTCAGTTGGAGGATTAG+TGG | - | chr1_3:27956645-27956664 | Msa0112690:intron | 40.0% | |
| TTAGTGGCACGATATGCTAT+TGG | - | chr1_3:27956661-27956680 | Msa0112690:intron | 40.0% | |
| TAGTGGCACGATATGCTATT+GGG | - | chr1_3:27956662-27956681 | Msa0112690:intron | 40.0% | |
| ATGCTATTGGGAAGCTGTAT+AGG | - | chr1_3:27956674-27956693 | Msa0112690:intron | 40.0% | |
| AACGAACCTATTCAGGATTC+AGG | - | chr1_3:27956706-27956725 | Msa0112690:intron | 40.0% | |
| ! | GAAAGTAAGGTGGACTCAAT+AGG | - | chr1_3:27956736-27956755 | Msa0112690:intron | 40.0% |
| AATAGGTACAATATGTGGCC+TGG | - | chr1_3:27956753-27956772 | Msa0112690:intron | 40.0% | |
| TTACGAAATTCATTGCCTCC+AGG | + | chr1_3:27956774-27956793 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGATGAAAGA+GGG | + | chr1_3:27956975-27956994 | None:intergenic | 40.0% | |
| TGGAACGGTTTCTCGTTATT+AGG | - | chr1_3:27957166-27957185 | Msa0112690:CDS | 40.0% | |
| ! | GGCCACAACATTAGGTTTTA+AGG | + | chr1_3:27957403-27957422 | None:intergenic | 40.0% |
| ACAACGTATAGTGAGGGTTT+GGG | + | chr1_3:27957893-27957912 | None:intergenic | 40.0% | |
| AACAACGTATAGTGAGGGTT+TGG | + | chr1_3:27957894-27957913 | None:intergenic | 40.0% | |
| CGAATGACAGTTTATGGGTT+TGG | - | chr1_3:27957964-27957983 | Msa0112690:intron | 40.0% | |
| GCAGTTACCCCAAAAAGAAA+TGG | + | chr1_3:27958242-27958261 | None:intergenic | 40.0% | |
| ! | AGGTTTTCCTTCATCGTCAT+CGG | + | chr1_3:27958333-27958352 | None:intergenic | 40.0% |
| TCAATCATGCGTTTGAGCAA+TGG | + | chr1_3:27958356-27958375 | None:intergenic | 40.0% | |
| CGCATGATTGAAGACTATGA+TGG | - | chr1_3:27958365-27958384 | Msa0112690:intron | 40.0% | |
| !! | AATGGCTCTGACAAGATAGA+AGG | - | chr1_3:27958868-27958887 | Msa0112690:CDS | 40.0% |
| TCTTTCACACTGCTCTTACA+TGG | - | chr1_3:27959026-27959045 | Msa0112690:CDS | 40.0% | |
| CGATGGTAGAATCTTGCTTT+AGG | + | chr1_3:27959273-27959292 | None:intergenic | 40.0% | |
| ! | TAACTTTACCCATTTGGGGT+TGG | - | chr1_3:27959313-27959332 | Msa0112690:intron | 40.0% |
| !! | AGCTTGCTCTGGCTTTAAAT+GGG | - | chr1_3:27959430-27959449 | Msa0112690:intron | 40.0% |
| AAAACTCAGTATCCGATCCA+AGG | + | chr1_3:27959502-27959521 | None:intergenic | 40.0% | |
| TGGGTTCCGAATCATATGTT+CGG | + | chr1_3:27959581-27959600 | None:intergenic | 40.0% | |
| ACTGGAATGAAAACTTGCAG+AGG | - | chr1_3:27960075-27960094 | Msa0112690:intron | 40.0% | |
| AGGTTTGTCTTCTGTGTCAT+GGG | - | chr1_3:27960108-27960127 | Msa0112690:intron | 40.0% | |
| CAAATCTCTGTCTGCTACTA+TGG | + | chr1_3:27960153-27960172 | None:intergenic | 40.0% | |
| TGCTGCTCATAGTGTAATTC+AGG | - | chr1_3:27960171-27960190 | Msa0112690:intron | 40.0% | |
| TTGACACATTAGAAAGGGCA+GGG | + | chr1_3:27960208-27960227 | None:intergenic | 40.0% | |
| TTTGACACATTAGAAAGGGC+AGG | + | chr1_3:27960209-27960228 | None:intergenic | 40.0% | |
| GACCAAATCTCACATATGGA+AGG | - | chr1_3:27960320-27960339 | Msa0112690:intron | 40.0% | |
| CACCTTCCATATGTGAGATT+TGG | + | chr1_3:27960325-27960344 | None:intergenic | 40.0% | |
| GAAGAGATCGGGAAGGAAAA+AGG | + | chr1_3:27954944-27954963 | None:intergenic | 45.0% | |
| ! | AGTCGGTGTTTGGAAGAGAT+CGG | + | chr1_3:27954956-27954975 | None:intergenic | 45.0% |
| ! | TGGGAAATGAAGTCGGTGTT+TGG | + | chr1_3:27954966-27954985 | None:intergenic | 45.0% |
| TCTTCTCCATAGGATCAACG+AGG | + | chr1_3:27955007-27955026 | None:intergenic | 45.0% | |
| CACACATCGTTCTTCTCCAT+AGG | + | chr1_3:27955017-27955036 | None:intergenic | 45.0% | |
| GAAGAACGATGTGTGCACAT+CGG | - | chr1_3:27955022-27955041 | Msa0112690:three_prime_UTR | 45.0% | |
| GACCATGACAACAAGATGGT+CGG | + | chr1_3:27955105-27955124 | None:intergenic | 45.0% | |
| TGGTCAATGGAATTCTCGGA+AGG | - | chr1_3:27955120-27955139 | Msa0112690:three_prime_UTR | 45.0% | |
| ACTAGATGGTGTGGACGTAA+TGG | - | chr1_3:27955980-27955999 | Msa0112690:intron | 45.0% | |
| CTAGATGGTGTGGACGTAAT+GGG | - | chr1_3:27955981-27956000 | Msa0112690:intron | 45.0% | |
| TGAATAGGTTCGTTTCCAGG+TGG | + | chr1_3:27956700-27956719 | None:intergenic | 45.0% | |
| ACCTGGAAACGAACCTATTC+AGG | - | chr1_3:27956699-27956718 | Msa0112690:intron | 45.0% | |
| TCCTGAATAGGTTCGTTTCC+AGG | + | chr1_3:27956703-27956722 | None:intergenic | 45.0% | |
| AACTGTTGCTACACCTCATC+TGG | - | chr1_3:27956792-27956811 | Msa0112690:intron | 45.0% | |
| ACTGTTGCTACACCTCATCT+GGG | - | chr1_3:27956793-27956812 | Msa0112690:intron | 45.0% | |
| CATTACACACCAGACTACAG+AGG | + | chr1_3:27956940-27956959 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGATGAAAG+AGG | + | chr1_3:27956976-27956995 | None:intergenic | 45.0% | |
| ATTTGTCCGGATTTGAACCC+AGG | - | chr1_3:27957826-27957845 | Msa0112690:intron | 45.0% | |
| ! | GATAAGGAGTTTGAGGTCCT+GGG | + | chr1_3:27957846-27957865 | None:intergenic | 45.0% |
| GCTAAGGGATAAGGAGTTTG+AGG | + | chr1_3:27957853-27957872 | None:intergenic | 45.0% | |
| ! | GTTCAACTGGTCTGAGCTAA+GGG | + | chr1_3:27957868-27957887 | None:intergenic | 45.0% |
| ! | AGTTCAACTGGTCTGAGCTA+AGG | + | chr1_3:27957869-27957888 | None:intergenic | 45.0% |
| !! | GGATTTTTAGAAGAACGGGC+CGG | - | chr1_3:27958294-27958313 | Msa0112690:intron | 45.0% |
| CATCGGTAAGGAAAAGATGC+CGG | + | chr1_3:27958316-27958335 | None:intergenic | 45.0% | |
| TTCCTTACCGATGACGATGA+AGG | - | chr1_3:27958323-27958342 | Msa0112690:intron | 45.0% | |
| TTCCTTCATCGTCATCGGTA+AGG | + | chr1_3:27958328-27958347 | None:intergenic | 45.0% | |
| ATCATGCGTTTGAGCAATGG+AGG | + | chr1_3:27958353-27958372 | None:intergenic | 45.0% | |
| CATTGCGCTCTTTCAAACGT+CGG | - | chr1_3:27958487-27958506 | Msa0112690:intron | 45.0% | |
| ATTGCGCTCTTTCAAACGTC+GGG | - | chr1_3:27958488-27958507 | Msa0112690:intron | 45.0% | |
| !! | TCTATTTGGTTGGTAGTGGG+AGG | - | chr1_3:27958759-27958778 | Msa0112690:intron | 45.0% |
| TCACACTGCTCTTACATGGT+TGG | - | chr1_3:27959030-27959049 | Msa0112690:CDS | 45.0% | |
| !! | GAGCTTGCTCTGGCTTTAAA+TGG | - | chr1_3:27959429-27959448 | Msa0112690:intron | 45.0% |
| !! | GCTTGCTCTGGCTTTAAATG+GGG | - | chr1_3:27959431-27959450 | Msa0112690:intron | 45.0% |
| !! | ATTGATCCCCTCGGATTAGT+CGG | - | chr1_3:27959475-27959494 | Msa0112690:intron | 45.0% |
| ATGAAAACTTGCAGAGGAGC+TGG | - | chr1_3:27960081-27960100 | Msa0112690:intron | 45.0% | |
| CAGGTTTGTCTTCTGTGTCA+TGG | - | chr1_3:27960107-27960126 | Msa0112690:intron | 45.0% | |
| TGTTGCAGGATGGAAACAAC+CGG | - | chr1_3:27960517-27960536 | Msa0112690:intron | 45.0% | |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_3:27957594-27957613 | None:intergenic | 5.0% |
| !! | TAATTTATATTAATATGTAA+GGG | - | chr1_3:27957675-27957694 | Msa0112690:intron | 5.0% |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_3:27957594-27957613 | None:intergenic | 5.0% |
| GTGTTTGGAAGAGATCGGGA+AGG | + | chr1_3:27954951-27954970 | None:intergenic | 50.0% | |
| ! | GTCGGTGTTTGGAAGAGATC+GGG | + | chr1_3:27954955-27954974 | None:intergenic | 50.0% |
| TGCACATCGGAATCCATCGA+TGG | - | chr1_3:27955035-27955054 | Msa0112690:three_prime_UTR | 50.0% | |
| CATGACAACAAGATGGTCGG+CGG | + | chr1_3:27955102-27955121 | None:intergenic | 50.0% | |
| ! | GCAACCGAGTTGACAAGCTT+TGG | - | chr1_3:27955803-27955822 | Msa0112690:intron | 50.0% |
| GACATCCTTCTTTCTTGGGG+AGG | - | chr1_3:27955825-27955844 | Msa0112690:intron | 50.0% | |
| TCAAGCCTCCCCAAGAAAGA+AGG | + | chr1_3:27955833-27955852 | None:intergenic | 50.0% | |
| AGGTACAATATGTGGCCTGG+AGG | - | chr1_3:27956756-27956775 | Msa0112690:intron | 50.0% | |
| CTGTTGCTACACCTCATCTG+GGG | - | chr1_3:27956794-27956813 | Msa0112690:intron | 50.0% | |
| ! | TACACCTCATCTGGGGTCAA+GGG | - | chr1_3:27956801-27956820 | Msa0112690:intron | 50.0% |
| GCTTAGTGTCCTCTGTAGTC+TGG | - | chr1_3:27956928-27956947 | Msa0112690:intron | 50.0% | |
| TGAGGTCCTGGGTTCAAATC+CGG | + | chr1_3:27957835-27957854 | None:intergenic | 50.0% | |
| ! | GGATAAGGAGTTTGAGGTCC+TGG | + | chr1_3:27957847-27957866 | None:intergenic | 50.0% |
| CTGGTCTGAGCTAAGGGATA+AGG | + | chr1_3:27957862-27957881 | None:intergenic | 50.0% | |
| GAGGGTTTGGGTAGTTCAAC+TGG | + | chr1_3:27957881-27957900 | None:intergenic | 50.0% | |
| TAGCGGCACATTCATCTCTG+TGG | - | chr1_3:27958090-27958109 | Msa0112690:intron | 50.0% | |
| AAGATCCCAAGCCAACCACT+AGG | + | chr1_3:27959339-27959358 | None:intergenic | 50.0% | |
| !! | TAGTGGTTGGCTTGGGATCT+TGG | - | chr1_3:27959338-27959357 | Msa0112690:intron | 50.0% |
| ! | CTTGGAGTTTGCTCCTCTCA+AGG | - | chr1_3:27959356-27959375 | Msa0112690:intron | 50.0% |
| TTTGCTCCTCTCAAGGTCTC+AGG | - | chr1_3:27959363-27959382 | Msa0112690:intron | 50.0% | |
| ATCGAACCTGAGACCTTGAG+AGG | + | chr1_3:27959372-27959391 | None:intergenic | 50.0% | |
| ! | ATTCCCGCTGGTGCCAATTT+CGG | - | chr1_3:27959390-27959409 | Msa0112690:intron | 50.0% |
| ATGGACTTGCCCACCGAAAT+TGG | + | chr1_3:27959406-27959425 | None:intergenic | 50.0% | |
| ! | AGTCCATACAGAGCTTGCTC+TGG | - | chr1_3:27959419-27959438 | Msa0112690:intron | 50.0% |
| AAGCCAGAGCAAGCTCTGTA+TGG | + | chr1_3:27959425-27959444 | None:intergenic | 50.0% | |
| !! | GGATTAGTCGGTCCTTGGAT+CGG | - | chr1_3:27959487-27959506 | Msa0112690:intron | 50.0% |
| AACATCGCGGCTTCCATCGA+TGG | + | chr1_3:27955051-27955070 | None:intergenic | 55.0% | |
| TCGATGGAAGCCGCGATGTT+TGG | - | chr1_3:27955051-27955070 | Msa0112690:three_prime_UTR | 55.0% | |
| GTCGGCGGAAGAAGAATCAG+AGG | + | chr1_3:27955087-27955106 | None:intergenic | 55.0% | |
| ! | CGCCGACCATCTTGTTGTCA+TGG | - | chr1_3:27955100-27955119 | Msa0112690:three_prime_UTR | 55.0% |
| !! | GGACGTAATGGGCGAGAGAT+TGG | - | chr1_3:27955992-27956011 | Msa0112690:intron | 55.0% |
| AATGGGCGAGAGATTGGCAG+AGG | - | chr1_3:27955998-27956017 | Msa0112690:intron | 55.0% | |
| ! | CTACACCTCATCTGGGGTCA+AGG | - | chr1_3:27956800-27956819 | Msa0112690:intron | 55.0% |
| ! | ACACCTCATCTGGGGTCAAG+GGG | - | chr1_3:27956802-27956821 | Msa0112690:intron | 55.0% |
| ACGACTGCGGCCACAACATT+AGG | + | chr1_3:27957411-27957430 | None:intergenic | 55.0% | |
| TAATGTTGTGGCCGCAGTCG+TGG | - | chr1_3:27957410-27957429 | Msa0112690:CDS | 55.0% | |
| CCACTAGGCCAACCCCAAAT+GGG | + | chr1_3:27959324-27959343 | None:intergenic | 55.0% | |
| ACCACTAGGCCAACCCCAAA+TGG | + | chr1_3:27959325-27959344 | None:intergenic | 55.0% | |
| !! | TTTGGGGTTGGCCTAGTGGT+TGG | - | chr1_3:27959325-27959344 | Msa0112690:intron | 55.0% |
| !! | GTTGGCCTAGTGGTTGGCTT+GGG | - | chr1_3:27959331-27959350 | Msa0112690:intron | 55.0% |
| TTAAATGGGGTCCCCGCAAG+TGG | - | chr1_3:27959444-27959463 | Msa0112690:intron | 55.0% | |
| TAAATGGGGTCCCCGCAAGT+GGG | - | chr1_3:27959445-27959464 | Msa0112690:intron | 55.0% | |
| CAAGGACCGACTAATCCGAG+GGG | + | chr1_3:27959484-27959503 | None:intergenic | 55.0% | |
| CCAAGGACCGACTAATCCGA+GGG | + | chr1_3:27959485-27959504 | None:intergenic | 55.0% | |
| TCCAAGGACCGACTAATCCG+AGG | + | chr1_3:27959486-27959505 | None:intergenic | 55.0% | |
| CTTGCAGAGGAGCTGGTAAC+AGG | - | chr1_3:27960088-27960107 | Msa0112690:intron | 55.0% | |
| GGGAAGCTGTATAGGCCACC+TGG | - | chr1_3:27956682-27956701 | Msa0112690:intron | 60.0% | |
| TTGCCCCTTGACCCCAGATG+AGG | + | chr1_3:27956808-27956827 | None:intergenic | 60.0% | |
| GGGGTCAAGGGGCAATAAGC+AGG | - | chr1_3:27956813-27956832 | Msa0112690:CDS | 60.0% | |
| AAGGTCCGCAACCACGACTG+CGG | + | chr1_3:27957424-27957443 | None:intergenic | 60.0% | |
| !! | CCCATTTGGGGTTGGCCTAG+TGG | - | chr1_3:27959321-27959340 | Msa0112690:intron | 60.0% |
| !! | GGTTGGCCTAGTGGTTGGCT+TGG | - | chr1_3:27959330-27959349 | Msa0112690:intron | 60.0% |
| GTCTCAGGTTCGATTCCCGC+TGG | - | chr1_3:27959378-27959397 | Msa0112690:intron | 60.0% | |
| CCACCGAAATTGGCACCAGC+GGG | + | chr1_3:27959396-27959415 | None:intergenic | 60.0% | |
| CCCACCGAAATTGGCACCAG+CGG | + | chr1_3:27959397-27959416 | None:intergenic | 60.0% | |
| ! | CCGCTGGTGCCAATTTCGGT+GGG | - | chr1_3:27959394-27959413 | Msa0112690:intron | 60.0% |
| TCAATCCCACCGCCCACTTG+CGG | + | chr1_3:27959460-27959479 | None:intergenic | 60.0% | |
| !! | CCCTCGGATTAGTCGGTCCT+TGG | - | chr1_3:27959482-27959501 | Msa0112690:intron | 60.0% |
| GGGCGAGAGATTGGCAGAGG+AGG | - | chr1_3:27956001-27956020 | Msa0112690:intron | 65.0% | |
| TGTGGCCGCAGTCGTGGTTG+CGG | - | chr1_3:27957416-27957435 | Msa0112690:CDS | 65.0% | |
| ! | CCCGCTGGTGCCAATTTCGG+TGG | - | chr1_3:27959393-27959412 | Msa0112690:intron | 65.0% |
| AATCCCACCGCCCACTTGCG+GGG | + | chr1_3:27959458-27959477 | None:intergenic | 65.0% | |
| CAATCCCACCGCCCACTTGC+GGG | + | chr1_3:27959459-27959478 | None:intergenic | 65.0% | |
| GGCGGTGGGATTGATCCCCT+CGG | - | chr1_3:27959466-27959485 | Msa0112690:intron | 65.0% | |
| ATGGGGTCCCCGCAAGTGGG+CGG | - | chr1_3:27959448-27959467 | Msa0112690:intron | 70.0% | |
| GGTCCCCGCAAGTGGGCGGT+GGG | - | chr1_3:27959452-27959471 | Msa0112690:intron | 75.0% | |
| ! | GGGTCCCCGCAAGTGGGCGG+TGG | - | chr1_3:27959451-27959470 | Msa0112690:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 27954904 | 27960795 | 27954904 | ID=Msa0112690;Name=Msa0112690 |
| chr1_3 | mRNA | 27954904 | 27960795 | 27954904 | ID=Msa0112690-mRNA-1;Parent=Msa0112690;Name=Msa0112690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=113|1|1|1|0.9|0.90|11|328|354 |
| chr1_3 | exon | 27954904 | 27955174 | 27954904 | ID=Msa0112690-mRNA-1:exon:9254;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27955257 | 27955385 | 27955257 | ID=Msa0112690-mRNA-1:exon:9253;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27955507 | 27955604 | 27955507 | ID=Msa0112690-mRNA-1:exon:9252;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27956810 | 27956924 | 27956810 | ID=Msa0112690-mRNA-1:exon:9251;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27957010 | 27957062 | 27957010 | ID=Msa0112690-mRNA-1:exon:9250;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27957162 | 27957217 | 27957162 | ID=Msa0112690-mRNA-1:exon:9249;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27957300 | 27957463 | 27957300 | ID=Msa0112690-mRNA-1:exon:9248;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27958865 | 27959107 | 27958865 | ID=Msa0112690-mRNA-1:exon:9247;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27959677 | 27959747 | 27959677 | ID=Msa0112690-mRNA-1:exon:9246;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27960342 | 27960409 | 27960342 | ID=Msa0112690-mRNA-1:exon:9245;Parent=Msa0112690-mRNA-1 |
| chr1_3 | exon | 27960558 | 27960795 | 27960558 | ID=Msa0112690-mRNA-1:exon:9244;Parent=Msa0112690-mRNA-1 |
| chr1_3 | five_prime_UTR | 27960683 | 27960795 | 27960683 | ID=Msa0112690-mRNA-1:five_prime_utr;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27960558 | 27960682 | 27960558 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27960342 | 27960409 | 27960342 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27959677 | 27959747 | 27959677 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27958865 | 27959107 | 27958865 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27957300 | 27957463 | 27957300 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27957162 | 27957217 | 27957162 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27957010 | 27957062 | 27957010 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27956810 | 27956924 | 27956810 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27955507 | 27955604 | 27955507 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | CDS | 27955314 | 27955385 | 27955314 | ID=Msa0112690-mRNA-1:cds;Parent=Msa0112690-mRNA-1 |
| chr1_3 | three_prime_UTR | 27955257 | 27955313 | 27955257 | ID=Msa0112690-mRNA-1:three_prime_utr;Parent=Msa0112690-mRNA-1 |
| chr1_3 | three_prime_UTR | 27954904 | 27955174 | 27954904 | ID=Msa0112690-mRNA-1:three_prime_utr;Parent=Msa0112690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
