Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018940 | sp|Q08448|LPL1_YEAST | 25.769 | 260 | 157 | 9 | 27 | 275 | 2 | 236 | 4.74e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0018940 | 0.800340 | 1.508915e-48 | -8.615850e-47 |
| Msa0018940 | Msa0037880 | 0.808267 | 3.368265e-50 | -8.615850e-47 |
| Msa0018940 | Msa0042920 | 0.807967 | 3.901642e-50 | -8.615850e-47 |
| Msa0018940 | Msa0050200 | 0.984675 | 2.962149e-161 | -8.615850e-47 |
| Msa0018940 | Msa0052030 | 0.803467 | 3.438427e-49 | -8.615850e-47 |
| Msa0018940 | Msa0065950 | 0.814792 | 1.286378e-51 | -8.615850e-47 |
| Msa0018940 | Msa0078420 | 0.818104 | 2.332663e-52 | -8.615850e-47 |
| Msa0018940 | Msa0112690 | 0.970962 | 2.022070e-132 | -8.615850e-47 |
| Msa0018940 | Msa0169820 | 0.802559 | 5.297710e-49 | -8.615850e-47 |
| Msa0018940 | Msa0183010 | -0.822817 | 1.933561e-53 | -8.615850e-47 |
| Msa0018940 | Msa0199800 | -0.801462 | 8.903728e-49 | -8.615850e-47 |
| Msa0018940 | Msa0219240 | 0.812617 | 3.874741e-51 | -8.615850e-47 |
| Msa0018940 | Msa0230640 | -0.827574 | 1.451172e-54 | -8.615850e-47 |
| Msa0018940 | Msa0296980 | -0.805559 | 1.259274e-49 | -8.615850e-47 |
| Msa0018940 | Msa0337590 | 0.803636 | 3.172209e-49 | -8.615850e-47 |
| Msa0018940 | Msa0387280 | 0.824073 | 9.835284e-54 | -8.615850e-47 |
| Msa0018940 | Msa0412840 | 0.812595 | 3.916746e-51 | -8.615850e-47 |
| Msa0018940 | Msa0490140 | 0.808507 | 2.994391e-50 | -8.615850e-47 |
| Msa0018940 | Msa0518170 | 0.812518 | 4.071209e-51 | -8.615850e-47 |
| Msa0018940 | Msa0521740 | 0.813328 | 2.705614e-51 | -8.615850e-47 |
| Msa0018940 | Msa0610130 | 0.800048 | 1.730004e-48 | -8.615850e-47 |
| Msa0018940 | Msa0610180 | 0.805174 | 1.515816e-49 | -8.615850e-47 |
| Msa0018940 | Msa0643320 | 0.831380 | 1.724906e-55 | -8.615850e-47 |
| Msa0018940 | Msa0683140 | 0.820637 | 6.174300e-53 | -8.615850e-47 |
| Msa0018940 | Msa0683600 | 0.807041 | 6.134403e-50 | -8.615850e-47 |
| Msa0018940 | Msa0703910 | 0.803185 | 3.932873e-49 | -8.615850e-47 |
| Msa0018940 | Msa0705190 | 0.804402 | 2.197713e-49 | -8.615850e-47 |
| Msa0018940 | Msa0747270 | 0.801993 | 6.925950e-49 | -8.615850e-47 |
| Msa0018940 | Msa0817460 | 0.820527 | 6.545583e-53 | -8.615850e-47 |
| Msa0018940 | Msa0948320 | 0.806972 | 6.344549e-50 | -8.615850e-47 |
| Msa0018940 | Msa0970480 | 0.823445 | 1.379676e-53 | -8.615850e-47 |
| Msa0018940 | Msa0973100 | 0.811583 | 6.512240e-51 | -8.615850e-47 |
| Msa0018940 | Msa0994370 | 0.813444 | 2.551911e-51 | -8.615850e-47 |
| Msa0018940 | Msa1001390 | 0.802314 | 5.949919e-49 | -8.615850e-47 |
| Msa0018940 | Msa1082250 | 0.809331 | 1.995064e-50 | -8.615850e-47 |
| Msa0018940 | Msa1098250 | 0.800758 | 1.240246e-48 | -8.615850e-47 |
| Msa0018940 | Msa1107190 | 0.804296 | 2.312562e-49 | -8.615850e-47 |
| Msa0018940 | Msa1111870 | 0.820764 | 5.773076e-53 | -8.615850e-47 |
| Msa0018940 | Msa1186360 | 0.814015 | 1.910621e-51 | -8.615850e-47 |
| Msa0018940 | Msa1195180 | 0.800896 | 1.162431e-48 | -8.615850e-47 |
| Msa0018940 | Msa1215920 | 0.806000 | 1.017467e-49 | -8.615850e-47 |
| Msa0018940 | Msa1263290 | -0.822920 | 1.829365e-53 | -8.615850e-47 |
| Msa0018940 | Msa1270660 | 0.817587 | 3.051693e-52 | -8.615850e-47 |
| Msa0018940 | Msa1270730 | 0.808441 | 3.092604e-50 | -8.615850e-47 |
| Msa0018940 | Msa1394310 | 0.807909 | 4.014274e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018940 | MtrunA17_Chr1g0170451 | 98.588 | 354 | 5 | 0 | 1 | 354 | 1 | 354 | 0.0 | 722 |
| Msa0018940 | MtrunA17_Chr0c06g0493481 | 53.509 | 342 | 133 | 6 | 31 | 352 | 81 | 416 | 8.04e-120 | 352 |
| Msa0018940 | MtrunA17_Chr4g0072801 | 53.107 | 354 | 145 | 6 | 20 | 353 | 58 | 410 | 4.65e-119 | 350 |
| Msa0018940 | MtrunA17_Chr3g0140681 | 50.289 | 346 | 155 | 6 | 23 | 352 | 53 | 397 | 9.21e-109 | 323 |
| Msa0018940 | MtrunA17_Chr8g0379001 | 41.620 | 358 | 182 | 5 | 20 | 350 | 79 | 436 | 3.25e-88 | 272 |
| Msa0018940 | MtrunA17_Chr2g0283771 | 42.598 | 331 | 168 | 3 | 30 | 338 | 83 | 413 | 6.41e-84 | 261 |
| Msa0018940 | MtrunA17_Chr7g0214251 | 45.882 | 85 | 37 | 2 | 98 | 173 | 42 | 126 | 3.36e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018940 | AT5G51180.2 | 71.875 | 352 | 96 | 2 | 2 | 352 | 6 | 355 | 0.0 | 539 |
| Msa0018940 | AT5G51180.1 | 71.875 | 352 | 96 | 2 | 2 | 352 | 6 | 355 | 0.0 | 539 |
| Msa0018940 | AT4G25770.1 | 52.991 | 351 | 156 | 6 | 8 | 352 | 69 | 416 | 3.27e-123 | 361 |
| Msa0018940 | AT4G25770.2 | 51.289 | 349 | 161 | 6 | 8 | 350 | 69 | 414 | 3.11e-116 | 343 |
| Msa0018940 | AT1G10040.1 | 48.870 | 354 | 159 | 5 | 14 | 352 | 64 | 410 | 5.36e-113 | 335 |
| Msa0018940 | AT1G10040.2 | 48.214 | 336 | 152 | 5 | 14 | 334 | 64 | 392 | 1.78e-104 | 313 |
| Msa0018940 | AT1G29120.1 | 40.517 | 348 | 186 | 3 | 23 | 350 | 94 | 440 | 4.35e-86 | 267 |
| Msa0018940 | AT1G29120.2 | 40.517 | 348 | 186 | 3 | 23 | 350 | 94 | 440 | 4.35e-86 | 267 |
| Msa0018940 | AT1G29120.8 | 40.517 | 348 | 186 | 3 | 23 | 350 | 95 | 441 | 5.26e-86 | 267 |
| Msa0018940 | AT1G29120.5 | 40.115 | 349 | 187 | 4 | 23 | 350 | 94 | 441 | 7.36e-83 | 259 |
| Msa0018940 | AT1G29120.7 | 40.356 | 337 | 180 | 3 | 23 | 339 | 94 | 429 | 1.15e-81 | 255 |
| Msa0018940 | AT1G29120.3 | 43.939 | 264 | 145 | 2 | 23 | 284 | 94 | 356 | 3.95e-73 | 232 |
| Msa0018940 | AT1G29120.4 | 43.939 | 264 | 145 | 2 | 23 | 284 | 94 | 356 | 6.37e-73 | 231 |
| Msa0018940 | AT1G29120.6 | 43.111 | 225 | 125 | 2 | 23 | 245 | 94 | 317 | 1.46e-60 | 197 |
Find 128 sgRNAs with CRISPR-Local
Find 414 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAGACTTTACGCATATT+TGG | 0.190717 | 1_1:+32317919 | None:intergenic |
| CAAATCTCTGTCTGCTACTA+TGG | 0.221832 | 1_1:+32314137 | None:intergenic |
| TGCTGCTCATAGTGTAATTC+AGG | 0.244054 | 1_1:-32314116 | Msa0018940:intron |
| AAGTTCATTATTACGTCTAA+TGG | 0.252273 | 1_1:+32315627 | None:intergenic |
| AGGAATGTGAAAGTTACTTT+TGG | 0.287208 | 1_1:+32319850 | None:intergenic |
| AACTGTTGCTACACCTCATC+TGG | 0.300273 | 1_1:-32317743 | Msa0018940:CDS |
| CAATTCTTCACCTCAACTAA+TGG | 0.303591 | 1_1:+32313726 | None:intergenic |
| TGCTGACTCAATTACTTTCA+TGG | 0.310425 | 1_1:+32313623 | None:intergenic |
| CACCTTCCATATGTGAGATT+TGG | 0.316169 | 1_1:+32313965 | None:intergenic |
| GAAGAGATCGGGAAGGAAAA+AGG | 0.326840 | 1_1:+32319594 | None:intergenic |
| TTGCAAGTGTTGTTATTCAT+TGG | 0.328297 | 1_1:-32316015 | Msa0018940:CDS |
| TGGGAAATGAAGTCGGTGTT+TGG | 0.347341 | 1_1:+32319572 | None:intergenic |
| ACATCATCTATGTCAGAAAA+TGG | 0.353937 | 1_1:+32313917 | None:intergenic |
| TCGATGGAAGCCGCGATGTT+TGG | 0.354256 | 1_1:-32319484 | Msa0018940:CDS |
| CTTGCAGAGGAGCTGGTAAC+AGG | 0.354687 | 1_1:-32314199 | Msa0018940:intron |
| AACGAACCTATTCAGGATTC+AGG | 0.363980 | 1_1:-32317829 | Msa0018940:CDS |
| TCCTGAATAGGTTCGTTTCC+AGG | 0.365379 | 1_1:+32317835 | None:intergenic |
| GGAATGAAAATTCAGTAGAT+TGG | 0.367176 | 1_1:+32319552 | None:intergenic |
| GGAAGAAGAATCAGAGGATT+TGG | 0.376802 | 1_1:+32319457 | None:intergenic |
| TTATTGCCTGAATCCTGAAT+AGG | 0.376991 | 1_1:+32317823 | None:intergenic |
| TTCATTCCTCGTTGATCCTA+TGG | 0.380939 | 1_1:-32319537 | Msa0018940:exon |
| CATCAACCTTGATGAAATCC+TGG | 0.393520 | 1_1:+32319985 | None:intergenic |
| ACCTGGAAACGAACCTATTC+AGG | 0.394728 | 1_1:-32317836 | Msa0018940:CDS |
| ATGCTATTGGGAAGCTGTAT+AGG | 0.395975 | 1_1:-32317861 | Msa0018940:CDS |
| AACAGTCTTTCTTCCTTCTC+AGG | 0.400523 | 1_1:-32319764 | Msa0018940:five_prime_UTR |
| CTACACCTCATCTGGGGTCA+AGG | 0.407726 | 1_1:-32317735 | Msa0018940:CDS |
| ACATTCAGTTGGAGGATTAG+TGG | 0.411370 | 1_1:-32317890 | Msa0018940:CDS |
| AAGACTGTTGTAAGAGTAAA+GGG | 0.412632 | 1_1:+32319778 | None:intergenic |
| TGTTAAAGAGCTTCCAGATA+AGG | 0.422694 | 1_1:-32319212 | Msa0018940:CDS |
| TTAGTGGCACGATATGCTAT+TGG | 0.426585 | 1_1:-32317874 | Msa0018940:CDS |
| CATCTTGTTGTCATGGTCAA+TGG | 0.429580 | 1_1:-32319428 | Msa0018940:CDS |
| TGTGACTTACTGAAAGATAA+TGG | 0.436010 | 1_1:-32315438 | Msa0018940:CDS |
| CTAGATGGTGTGGACGTAAT+GGG | 0.437976 | 1_1:-32318554 | Msa0018940:CDS |
| GAAAGTAAGGTGGACTCAAT+AGG | 0.438104 | 1_1:-32317799 | Msa0018940:CDS |
| CAAAGACCAAATCTCACATA+TGG | 0.440636 | 1_1:-32313971 | Msa0018940:CDS |
| GTTCTTGCAGTTCAAAGGAT+TGG | 0.440746 | 1_1:-32319255 | Msa0018940:intron |
| ACTCTGTTTGCTCGGTTGCT+CGG | 0.447103 | 1_1:-32319887 | Msa0018940:five_prime_UTR |
| GAATGAAAATTCAGTAGATT+GGG | 0.448910 | 1_1:+32319553 | None:intergenic |
| CTCAATTACTTTCATGGAAG+GGG | 0.448966 | 1_1:+32313629 | None:intergenic |
| GGACGTAATGGGCGAGAGAT+TGG | 0.454747 | 1_1:-32318543 | Msa0018940:CDS |
| TTCAGGCAATAAAGAAAGTA+AGG | 0.457167 | 1_1:-32317812 | Msa0018940:CDS |
| CACTTCCCAGGATTTCATCA+AGG | 0.457181 | 1_1:-32319991 | Msa0018940:five_prime_UTR |
| TAGTGGCACGATATGCTATT+GGG | 0.457957 | 1_1:-32317873 | Msa0018940:CDS |
| ACTAGATGGTGTGGACGTAA+TGG | 0.463599 | 1_1:-32318555 | Msa0018940:CDS |
| GTGTCTAAGCATACACTAGA+TGG | 0.465275 | 1_1:-32318569 | Msa0018940:CDS |
| AACATCGCGGCTTCCATCGA+TGG | 0.466052 | 1_1:+32319487 | None:intergenic |
| CTACATGTTCTTCACTTCCC+AGG | 0.468318 | 1_1:-32320003 | Msa0018940:five_prime_UTR |
| CGCCGACCATCTTGTTGTCA+TGG | 0.471162 | 1_1:-32319435 | Msa0018940:CDS |
| GTCATGGTCAATGGAATTCT+CGG | 0.471929 | 1_1:-32319419 | Msa0018940:CDS |
| GGGGTCAAGGGGCAATAAGC+AGG | 0.473817 | 1_1:-32317722 | Msa0018940:intron |
| GAAAATGCGAAGAGTTTGAA+TGG | 0.474440 | 1_1:+32319667 | None:intergenic |
| TTTATTTCACATTCAGTTGG+AGG | 0.476703 | 1_1:-32317898 | Msa0018940:CDS |
| TGTTTGTTCTTGCAGTTCAA+AGG | 0.477270 | 1_1:-32319260 | Msa0018940:intron |
| CATTGCGCTCTTTCAAACGT+CGG | 0.480963 | 1_1:-32315801 | Msa0018940:CDS |
| GTCGGTGTTTGGAAGAGATC+GGG | 0.482621 | 1_1:+32319583 | None:intergenic |
| CAGGTTTGTCTTCTGTGTCA+TGG | 0.483977 | 1_1:-32314180 | Msa0018940:CDS |
| AATGGCTCTGACAAGATAGA+AGG | 0.486489 | 1_1:-32315420 | Msa0018940:intron |
| TTCCTTCATCGTCATCGGTA+AGG | 0.488148 | 1_1:+32315963 | None:intergenic |
| AACCAACGACTCTGTTTGCT+CGG | 0.488413 | 1_1:-32319895 | Msa0018940:five_prime_UTR |
| AAACGATGGGGTAGTTATGT+GGG | 0.489975 | 1_1:+32319728 | None:intergenic |
| ATTGCGCTCTTTCAAACGTC+GGG | 0.490034 | 1_1:-32315800 | Msa0018940:CDS |
| AAAGACTGTTGTAAGAGTAA+AGG | 0.492269 | 1_1:+32319777 | None:intergenic |
| TCATTTATTTCACATTCAGT+TGG | 0.492843 | 1_1:-32317901 | Msa0018940:CDS |
| ATGAAAACTTGCAGAGGAGC+TGG | 0.494911 | 1_1:-32314206 | Msa0018940:intron |
| TTCCTTACCGATGACGATGA+AGG | 0.495815 | 1_1:-32315965 | Msa0018940:CDS |
| TCGGAAAATTGTTGAAGTGA+TGG | 0.498047 | 1_1:+32320046 | None:intergenic |
| TGTTGCAGGATGGAAACAAC+CGG | 0.503853 | 1_1:-32313770 | Msa0018940:intron |
| AGGTTTGTCTTCTGTGTCAT+GGG | 0.507004 | 1_1:-32314179 | Msa0018940:CDS |
| GAAACGATGGGGTAGTTATG+TGG | 0.507816 | 1_1:+32319727 | None:intergenic |
| ACATACATAATACATTGTTA+AGG | 0.508732 | 1_1:+32313683 | None:intergenic |
| TCAATCATGCGTTTGAGCAA+TGG | 0.509628 | 1_1:+32315935 | None:intergenic |
| TACACCTCATCTGGGGTCAA+GGG | 0.526067 | 1_1:-32317734 | Msa0018940:CDS |
| TGGAGTTGCAGAATATGAAC+TGG | 0.533829 | 1_1:+32320066 | None:intergenic |
| AATAGGTACAATATGTGGCC+TGG | 0.533865 | 1_1:-32317782 | Msa0018940:CDS |
| ACAAAATTCTCCATTAGTTG+AGG | 0.537109 | 1_1:-32313736 | Msa0018940:three_prime_UTR |
| GACTCAATTACTTTCATGGA+AGG | 0.538661 | 1_1:+32313627 | None:intergenic |
| AAACTTAAGATATCGTTGGC+TGG | 0.544097 | 1_1:-32315660 | Msa0018940:intron |
| GTAGTTGTTGTTACCTGAGA+AGG | 0.544864 | 1_1:+32319751 | None:intergenic |
| ACTGTTGCTACACCTCATCT+GGG | 0.546236 | 1_1:-32317742 | Msa0018940:CDS |
| ATCAACCTTGATGAAATCCT+GGG | 0.549254 | 1_1:+32319986 | None:intergenic |
| TCGGGTTATATATTCAAATG+TGG | 0.550231 | 1_1:-32315782 | Msa0018940:CDS |
| ATTGAACTCTTAGGTCATTG+AGG | 0.551531 | 1_1:-32317956 | Msa0018940:intron |
| AGTCGGTGTTTGGAAGAGAT+CGG | 0.556225 | 1_1:+32319582 | None:intergenic |
| TGCTCTTCATATACAACATG+TGG | 0.557368 | 1_1:+32315486 | None:intergenic |
| TTGCCCCTTGACCCCAGATG+AGG | 0.558459 | 1_1:+32317730 | None:intergenic |
| TAGCAATATAAGCTTTGCAA+AGG | 0.559858 | 1_1:-32313866 | Msa0018940:intron |
| AACCGAGCAAACAGAGTCGT+TGG | 0.561850 | 1_1:+32319893 | None:intergenic |
| ATGTGTATGATATGTAGATC+AGG | 0.563849 | 1_1:-32313660 | Msa0018940:three_prime_UTR |
| TGATTTGAATGATGAAACGA+TGG | 0.565975 | 1_1:+32319714 | None:intergenic |
| CGGGTTATATATTCAAATGT+GGG | 0.568217 | 1_1:-32315781 | Msa0018940:CDS |
| TTACGAAATTCATTGCCTCC+AGG | 0.577026 | 1_1:+32317764 | None:intergenic |
| ACTCAATTACTTTCATGGAA+GGG | 0.578158 | 1_1:+32313628 | None:intergenic |
| CGCATGATTGAAGACTATGA+TGG | 0.582406 | 1_1:-32315923 | Msa0018940:CDS |
| GACTCAATAGGTACAATATG+TGG | 0.583136 | 1_1:-32317787 | Msa0018940:CDS |
| ATCATGCGTTTGAGCAATGG+AGG | 0.583660 | 1_1:+32315938 | None:intergenic |
| GGGAAGCTGTATAGGCCACC+TGG | 0.595506 | 1_1:-32317853 | Msa0018940:CDS |
| GGGCGAGAGATTGGCAGAGG+AGG | 0.597828 | 1_1:-32318534 | Msa0018940:intron |
| GACCATGACAACAAGATGGT+CGG | 0.605131 | 1_1:+32319433 | None:intergenic |
| GACCAAATCTCACATATGGA+AGG | 0.605327 | 1_1:-32313967 | Msa0018940:CDS |
| AAAGGATTGGAAATTTGCGT+CGG | 0.611436 | 1_1:-32319242 | Msa0018940:CDS |
| AATGGGCGAGAGATTGGCAG+AGG | 0.611661 | 1_1:-32318537 | Msa0018940:CDS |
| CATCGGTAAGGAAAAGATGC+CGG | 0.614066 | 1_1:+32315975 | None:intergenic |
| ACGTAATAATGAACTTCCAA+AGG | 0.614206 | 1_1:-32315620 | Msa0018940:intron |
| GATTTGAATGATGAAACGAT+GGG | 0.615005 | 1_1:+32319715 | None:intergenic |
| ACACCTCATCTGGGGTCAAG+GGG | 0.616689 | 1_1:-32317733 | Msa0018940:CDS |
| CACACATCGTTCTTCTCCAT+AGG | 0.619034 | 1_1:+32319521 | None:intergenic |
| AGTAGATTGGGAAATGAAGT+CGG | 0.619814 | 1_1:+32319565 | None:intergenic |
| GTCGGCGGAAGAAGAATCAG+AGG | 0.622314 | 1_1:+32319451 | None:intergenic |
| TGCACATCGGAATCCATCGA+TGG | 0.622851 | 1_1:-32319500 | Msa0018940:CDS |
| GCAACAATATTATCATAATG+TGG | 0.629097 | 1_1:-32313552 | Msa0018940:three_prime_UTR |
| TGTATATGAAGAGCATTGCA+AGG | 0.629600 | 1_1:-32315478 | Msa0018940:CDS |
| TAAGCATACACTAGATGGTG+TGG | 0.631739 | 1_1:-32318564 | Msa0018940:CDS |
| CATTGACCATGACAACAAGA+TGG | 0.636800 | 1_1:+32319429 | None:intergenic |
| TGGTCAATGGAATTCTCGGA+AGG | 0.650694 | 1_1:-32319415 | Msa0018940:intron |
| AGGCAATAAAGAAAGTAAGG+TGG | 0.653905 | 1_1:-32317809 | Msa0018940:CDS |
| AACGATGGGGTAGTTATGTG+GGG | 0.657383 | 1_1:+32319729 | None:intergenic |
| GAAGAACGATGTGTGCACAT+CGG | 0.677135 | 1_1:-32319513 | Msa0018940:CDS |
| CATGACAACAAGATGGTCGG+CGG | 0.691898 | 1_1:+32319436 | None:intergenic |
| TGAATAGGTTCGTTTCCAGG+TGG | 0.692678 | 1_1:+32317838 | None:intergenic |
| AGGTACAATATGTGGCCTGG+AGG | 0.694202 | 1_1:-32317779 | Msa0018940:CDS |
| CTGTTGCTACACCTCATCTG+GGG | 0.704440 | 1_1:-32317741 | Msa0018940:CDS |
| GTGTTTGGAAGAGATCGGGA+AGG | 0.712651 | 1_1:+32319587 | None:intergenic |
| CTGTTGTAAGAGTAAAGGGG+CGG | 0.730147 | 1_1:+32319782 | None:intergenic |
| ATTTGGAACTCCAAACATCG+CGG | 0.732445 | 1_1:+32319474 | None:intergenic |
| GGAGTTGCAGAATATGAACT+GGG | 0.738395 | 1_1:+32320067 | None:intergenic |
| ATTTGAATGATGAAACGATG+GGG | 0.744796 | 1_1:+32319716 | None:intergenic |
| AGACTGTTGTAAGAGTAAAG+GGG | 0.757636 | 1_1:+32319779 | None:intergenic |
| TCTTCTCCATAGGATCAACG+AGG | 0.827529 | 1_1:+32319531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAACAATTAAAATAAAA+TGG | + | chr1_1:32316213-32316232 | None:intergenic | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_1:32316685-32316704 | Msa0018940:intron | 10.0% |
| !! | GTAATTTATATTAATATGTA+AGG | - | chr1_1:32316744-32316763 | Msa0018940:intron | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_1:32316685-32316704 | Msa0018940:intron | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_1:32316685-32316704 | Msa0018940:intron | 10.0% |
| !! | GTAATTTATATTAATATGTA+AGG | - | chr1_1:32316744-32316763 | Msa0018940:intron | 10.0% |
| !!! | TTTCTTTTTTAATTTTTGAA+TGG | - | chr1_1:32316685-32316704 | Msa0018940:intron | 10.0% |
| !! | ATATAAAAAGAATTTAACAT+GGG | + | chr1_1:32317735-32317754 | None:intergenic | 10.0% |
| !! | AATATAAAAAGAATTTAACA+TGG | + | chr1_1:32317736-32317755 | None:intergenic | 10.0% |
| !!! | TGTTAAATTCTTTTTATATT+TGG | - | chr1_1:32317736-32317755 | Msa0018940:CDS | 10.0% |
| !!! | ATTGTTATTTATTTTTTTAG+AGG | - | chr1_1:32319281-32319300 | Msa0018940:intron | 10.0% |
| !!! | AAAAAAATCTTTTGTTTACT+CGG | - | chr1_1:32314771-32314790 | Msa0018940:intron | 15.0% |
| !! | TATAATATATGTGACTAATA+AGG | + | chr1_1:32315175-32315194 | None:intergenic | 15.0% |
| !!! | TAATATACTGTTTTATTTGA+AGG | + | chr1_1:32315530-32315549 | None:intergenic | 15.0% |
| !!! | TATTTTAATTGTTTTTCTTC+TGG | - | chr1_1:32316216-32316235 | Msa0018940:intron | 15.0% |
| !! | ATCATTATGAAGATAATATT+AGG | + | chr1_1:32316289-32316308 | None:intergenic | 15.0% |
| !! | TAGAAAATTATAGATAAATG+TGG | - | chr1_1:32316416-32316435 | Msa0018940:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_1:32316658-32316677 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_1:32316712-32316731 | Msa0018940:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_1:32316658-32316677 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_1:32316712-32316731 | Msa0018940:intron | 15.0% |
| !! | TAGTAGTAAATTAATATGTA+AGG | - | chr1_1:32316866-32316885 | Msa0018940:intron | 15.0% |
| !! | AGTAGTAAATTAATATGTAA+GGG | - | chr1_1:32316867-32316886 | Msa0018940:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_1:32316658-32316677 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_1:32316712-32316731 | Msa0018940:intron | 15.0% |
| !! | AATAATGTATATATAGGATA+TGG | + | chr1_1:32316658-32316677 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATAATTTTTGAA+TGG | - | chr1_1:32316712-32316731 | Msa0018940:intron | 15.0% |
| !! | CAAATAAAAATATATGCAAT+AGG | + | chr1_1:32317911-32317930 | None:intergenic | 15.0% |
| !!! | CTATTGCATATATTTTTATT+TGG | - | chr1_1:32317909-32317928 | Msa0018940:CDS | 15.0% |
| !!! | CATTTGTTTTAAGAAAAATA+TGG | + | chr1_1:32318216-32318235 | None:intergenic | 15.0% |
| !!! | TGTACATTTTAAATGATATA+TGG | - | chr1_1:32318271-32318290 | Msa0018940:intron | 15.0% |
| !!! | TTATTTTGATGTAATCTAAT+TGG | - | chr1_1:32320031-32320050 | Msa0018940:five_prime_UTR | 15.0% |
| !! | AGAATTAATAAAAACTATCA+AGG | - | chr1_1:32320081-32320100 | Msa0018940:five_prime_UTR | 15.0% |
| !!! | GATGTATTTGTTATTGTAAT+TGG | - | chr1_1:32314263-32314282 | Msa0018940:intron | 20.0% |
| !!! | ATTGAAATTTTGAGATTTTG+TGG | - | chr1_1:32314286-32314305 | Msa0018940:intron | 20.0% |
| !! | TAATAAGGCAATATAATCTA+TGG | + | chr1_1:32315160-32315179 | None:intergenic | 20.0% |
| !!! | TATTTCTATCAAGTATTAAC+AGG | - | chr1_1:32315624-32315643 | Msa0018940:CDS | 20.0% |
| !! | TTATTTACTGTATGAAAGAA+AGG | + | chr1_1:32316113-32316132 | None:intergenic | 20.0% |
| !! | TTCTTTCATACAGTAAATAA+AGG | - | chr1_1:32316113-32316132 | Msa0018940:intron | 20.0% |
| !! | AAATTTCCCAAATTATTTAC+TGG | - | chr1_1:32316142-32316161 | Msa0018940:intron | 20.0% |
| !! | ACAAAACCAGTAAATAATTT+GGG | + | chr1_1:32316151-32316170 | None:intergenic | 20.0% |
| !!! | CAATTTCTCAAATTATTTTC+TGG | - | chr1_1:32316171-32316190 | Msa0018940:intron | 20.0% |
| !!! | ATCCTATATCTTTTATTCTT+CGG | - | chr1_1:32316582-32316601 | Msa0018940:intron | 20.0% |
| !! | TTCATGTAAATTAATATGCA+AGG | - | chr1_1:32316620-32316639 | Msa0018940:intron | 20.0% |
| !! | TCATGTAAATTAATATGCAA+GGG | - | chr1_1:32316621-32316640 | Msa0018940:intron | 20.0% |
| !! | GTTATATTATATTCAACTAG+CGG | - | chr1_1:32317390-32317409 | Msa0018940:intron | 20.0% |
| !!! | AGTATTTAAACTTGTTGATT+GGG | - | chr1_1:32317517-32317536 | Msa0018940:intron | 20.0% |
| !!! | GATATCTTAAGTTTTTATGA+AGG | + | chr1_1:32317939-32317958 | None:intergenic | 20.0% |
| !! | ATAAAAACTTAAGATATCGT+TGG | - | chr1_1:32317941-32317960 | Msa0018940:CDS | 20.0% |
| !! | AATATCACTAAATATACCTT+TGG | + | chr1_1:32318004-32318023 | None:intergenic | 20.0% |
| !!! | ATACTGTTTTTCTAGTTATA+TGG | - | chr1_1:32318496-32318515 | Msa0018940:intron | 20.0% |
| !! | TTATAAGATCTATTAGGAAT+GGG | + | chr1_1:32318917-32318936 | None:intergenic | 20.0% |
| !!! | AGATATTGTGTGATTTTTTT+TGG | - | chr1_1:32318977-32318996 | Msa0018940:intron | 20.0% |
| !!! | TAATTATTTTACATTACTCG+TGG | + | chr1_1:32319147-32319166 | None:intergenic | 20.0% |
| !!! | TTTTTATAATGACAACTTTC+TGG | - | chr1_1:32319173-32319192 | Msa0018940:intron | 20.0% |
| !! | AATAAAATCGTGTCATATTA+AGG | + | chr1_1:32319264-32319283 | None:intergenic | 20.0% |
| !! | TCAATCAGGTTTATAATATA+TGG | + | chr1_1:32319784-32319803 | None:intergenic | 20.0% |
| !! | ACATACATAATACATTGTTA+AGG | + | chr1_1:32319925-32319944 | None:intergenic | 20.0% |
| !!! | GTCTTTTAATTCTTTTGAAG+AGG | + | chr1_1:32313667-32313686 | None:intergenic | 25.0% |
| !!! | TTACTTTTGAAATGAGAATC+AGG | + | chr1_1:32313778-32313797 | None:intergenic | 25.0% |
| ! | GAATGAAAATTCAGTAGATT+GGG | + | chr1_1:32314055-32314074 | None:intergenic | 25.0% |
| !!! | GTTTTTGATTGATTTTGCTT+TGG | - | chr1_1:32314236-32314255 | Msa0018940:intron | 25.0% |
| !!! | TTTCTCTTTGATTTCTTTTC+TGG | - | chr1_1:32314440-32314459 | Msa0018940:intron | 25.0% |
| ! | ATAAAAAACGGACATACAAT+TGG | + | chr1_1:32314566-32314585 | None:intergenic | 25.0% |
| ! | ATTCCGAATGAGATAAAAAA+CGG | + | chr1_1:32314578-32314597 | None:intergenic | 25.0% |
| ! | GAATTTACTATATCTTCACT+AGG | - | chr1_1:32315126-32315145 | Msa0018940:intron | 25.0% |
| ! | CACTTATGAATATCTTATCA+AGG | + | chr1_1:32315306-32315325 | None:intergenic | 25.0% |
| ! | GATATTCATAAGTGATGTAT+AGG | - | chr1_1:32315312-32315331 | Msa0018940:intron | 25.0% |
| ! | GTTATTATCAACCAATACAA+AGG | + | chr1_1:32315348-32315367 | None:intergenic | 25.0% |
| !!! | GATACTTCAAATTTGCTAAA+GGG | + | chr1_1:32315405-32315424 | None:intergenic | 25.0% |
| !!! | AGATACTTCAAATTTGCTAA+AGG | + | chr1_1:32315406-32315425 | None:intergenic | 25.0% |
| !! | TTTAGCAAATTTGAAGTATC+TGG | - | chr1_1:32315405-32315424 | Msa0018940:intron | 25.0% |
| !! | TTAGCAAATTTGAAGTATCT+GGG | - | chr1_1:32315406-32315425 | Msa0018940:intron | 25.0% |
| ! | GAAATTCGTCATTTCAAATA+AGG | - | chr1_1:32315444-32315463 | Msa0018940:CDS | 25.0% |
| ! | AATTACTTTCTGACATATGT+TGG | - | chr1_1:32315476-32315495 | Msa0018940:CDS | 25.0% |
| ! | TCATTTATTTCACATTCAGT+TGG | - | chr1_1:32315704-32315723 | Msa0018940:intron | 25.0% |
| ! | TAATTCTTAAGATGCAATGT+TGG | + | chr1_1:32315911-32315930 | None:intergenic | 25.0% |
| ! | GACAAAACCAGTAAATAATT+TGG | + | chr1_1:32316152-32316171 | None:intergenic | 25.0% |
| !!! | TAATTGTTTTTCTTCTGGAA+CGG | - | chr1_1:32316221-32316240 | Msa0018940:intron | 25.0% |
| ! | TGAAGATAATATTAGGATCA+TGG | + | chr1_1:32316282-32316301 | None:intergenic | 25.0% |
| ! | CATTAGTGAATCAAAATAGT+AGG | - | chr1_1:32316357-32316376 | Msa0018940:intron | 25.0% |
| ! | AAGAGCAAGACTTAAAATAA+AGG | + | chr1_1:32316513-32316532 | None:intergenic | 25.0% |
| ! | AACCGAAGAATAAAAGATAT+AGG | + | chr1_1:32316587-32316606 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_1:32316648-32316667 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_1:32316648-32316667 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_1:32316648-32316667 | None:intergenic | 25.0% |
| !! | ATATAGGATATGGTTCTTTT+TGG | + | chr1_1:32316648-32316667 | None:intergenic | 25.0% |
| ! | AAAAAAACAACGTATAGTGA+GGG | + | chr1_1:32317215-32317234 | None:intergenic | 25.0% |
| !!! | TTTACATCAAAAGCATTAGA+TGG | - | chr1_1:32317368-32317387 | Msa0018940:intron | 25.0% |
| ! | AAGATTTCATGTTCATTTGA+TGG | + | chr1_1:32317443-32317462 | None:intergenic | 25.0% |
| !!! | GAGTATTTAAACTTGTTGAT+TGG | - | chr1_1:32317516-32317535 | Msa0018940:intron | 25.0% |
| !!! | TCATTGGATTTTTAGAAGAA+CGG | - | chr1_1:32317606-32317625 | Msa0018940:intron | 25.0% |
| ! | AACATGACATAATCATTTGA+AGG | + | chr1_1:32317771-32317790 | None:intergenic | 25.0% |
| ! | GAAACATGTAATAGATATGA+AGG | + | chr1_1:32317862-32317881 | None:intergenic | 25.0% |
| ! | AAGTTCATTATTACGTCTAA+TGG | + | chr1_1:32317981-32318000 | None:intergenic | 25.0% |
| ! | TTTAGTGATGTACATCTATT+TGG | - | chr1_1:32318062-32318081 | Msa0018940:intron | 25.0% |
| !! | ATGTGGATATTTTTCATTGA+GGG | + | chr1_1:32318105-32318124 | None:intergenic | 25.0% |
| ! | TATATGAAAGAGGAAAACAA+TGG | + | chr1_1:32318377-32318396 | None:intergenic | 25.0% |
| ! | TTCATATAATCGTTGACAAT+TGG | - | chr1_1:32318389-32318408 | Msa0018940:intron | 25.0% |
| ! | TGGTTCTTTCTACATTATTA+TGG | - | chr1_1:32318409-32318428 | Msa0018940:intron | 25.0% |
| ! | TTATCATAACTTTACCCATT+TGG | - | chr1_1:32318624-32318643 | Msa0018940:intron | 25.0% |
| ! | TATCATAACTTTACCCATTT+GGG | - | chr1_1:32318625-32318644 | Msa0018940:intron | 25.0% |
| ! | CTTATAAGATCTATTAGGAA+TGG | + | chr1_1:32318918-32318937 | None:intergenic | 25.0% |
| !! | GTTCTAATAAACCATTTTGA+TGG | + | chr1_1:32319209-32319228 | None:intergenic | 25.0% |
| !! | TTGTTATTGTCATTGAATGT+TGG | - | chr1_1:32319312-32319331 | Msa0018940:intron | 25.0% |
| ! | CATATTTGACACATTAGAAA+GGG | + | chr1_1:32319531-32319550 | None:intergenic | 25.0% |
| ! | AAAATTGAACGTTATCAATC+AGG | + | chr1_1:32319798-32319817 | None:intergenic | 25.0% |
| !! | TCAGCACATTTTATTATTGA+TGG | - | chr1_1:32319999-32320018 | Msa0018940:five_prime_UTR | 25.0% |
| ! | GCAACAATATTATCATAATG+TGG | - | chr1_1:32320053-32320072 | Msa0018940:five_prime_UTR | 25.0% |
| !! | AACGAAAGCACACTAATTTT+CGG | + | chr1_1:32313581-32313600 | None:intergenic | 30.0% |
| !! | AGGAATGTGAAAGTTACTTT+TGG | + | chr1_1:32313758-32313777 | None:intergenic | 30.0% |
| AAGACTGTTGTAAGAGTAAA+GGG | + | chr1_1:32313830-32313849 | None:intergenic | 30.0% | |
| AAAGACTGTTGTAAGAGTAA+AGG | + | chr1_1:32313831-32313850 | None:intergenic | 30.0% | |
| ATTTGAATGATGAAACGATG+GGG | + | chr1_1:32313892-32313911 | None:intergenic | 30.0% | |
| GATTTGAATGATGAAACGAT+GGG | + | chr1_1:32313893-32313912 | None:intergenic | 30.0% | |
| TGATTTGAATGATGAAACGA+TGG | + | chr1_1:32313894-32313913 | None:intergenic | 30.0% | |
| GGAATGAAAATTCAGTAGAT+TGG | + | chr1_1:32314056-32314075 | None:intergenic | 30.0% | |
| !!! | TGTCCGTTTTTTATCTCATT+CGG | - | chr1_1:32314572-32314591 | Msa0018940:intron | 30.0% |
| GCACTTTGCATATCATTATT+CGG | - | chr1_1:32314627-32314646 | Msa0018940:intron | 30.0% | |
| TTGCATATCATTATTCGGTA+TGG | - | chr1_1:32314632-32314651 | Msa0018940:intron | 30.0% | |
| ! | TCAGTAATCTAGTTCATACT+TGG | - | chr1_1:32314670-32314689 | Msa0018940:intron | 30.0% |
| AATACAAGGTTCTATTGCAA+AGG | + | chr1_1:32314807-32314826 | None:intergenic | 30.0% | |
| ! | CTTTCTAGCACATAAATACA+AGG | + | chr1_1:32314821-32314840 | None:intergenic | 30.0% |
| GTACAAACAACAATTTCTTG+TGG | - | chr1_1:32314842-32314861 | Msa0018940:intron | 30.0% | |
| ACAATTTCTTGTGGTTTAAG+TGG | - | chr1_1:32314851-32314870 | Msa0018940:intron | 30.0% | |
| TCATCATCATCTATAGAACA+CGG | + | chr1_1:32315207-32315226 | None:intergenic | 30.0% | |
| TAACAGGAAATTGAACTCTT+AGG | - | chr1_1:32315640-32315659 | Msa0018940:CDS | 30.0% | |
| AATGAGACTTTACGCATATT+TGG | + | chr1_1:32315689-32315708 | None:intergenic | 30.0% | |
| TTTATTTCACATTCAGTTGG+AGG | - | chr1_1:32315707-32315726 | Msa0018940:intron | 30.0% | |
| TTCAGGCAATAAAGAAAGTA+AGG | - | chr1_1:32315793-32315812 | Msa0018940:CDS | 30.0% | |
| CACTAGACTAATGAAACATA+AGG | + | chr1_1:32315934-32315953 | None:intergenic | 30.0% | |
| ! | ATGTTTCATTAGTCTAGTGA+TGG | - | chr1_1:32315935-32315954 | Msa0018940:CDS | 30.0% |
| ! | TGTTTCATTAGTCTAGTGAT+GGG | - | chr1_1:32315936-32315955 | Msa0018940:CDS | 30.0% |
| ! | TTCTCTCTAAAAAGCTATAC+AGG | - | chr1_1:32316069-32316088 | Msa0018940:intron | 30.0% |
| TAGTGAATCAAAATAGTAGG+AGG | - | chr1_1:32316360-32316379 | Msa0018940:intron | 30.0% | |
| ATAGATAAATGTGGCTAATG+CGG | - | chr1_1:32316425-32316444 | Msa0018940:intron | 30.0% | |
| TACCCAAAGTCAATCATAAA+GGG | - | chr1_1:32316546-32316565 | Msa0018940:intron | 30.0% | |
| ! | AACCCTTTATGATTGACTTT+GGG | + | chr1_1:32316551-32316570 | None:intergenic | 30.0% |
| ATTCTTCGGTTTCATTTCTT+CGG | - | chr1_1:32316596-32316615 | Msa0018940:intron | 30.0% | |
| ! | ATCAGTTTTTCTCATTTGTC+CGG | - | chr1_1:32317129-32317148 | Msa0018940:intron | 30.0% |
| GAAAAAAACAACGTATAGTG+AGG | + | chr1_1:32317216-32317235 | None:intergenic | 30.0% | |
| GACTCTTATAATCTCTTTCT+TGG | - | chr1_1:32317239-32317258 | Msa0018940:intron | 30.0% | |
| !!! | TTGATTGGGTTTTGAATTTC+AGG | - | chr1_1:32317531-32317550 | Msa0018940:intron | 30.0% |
| !!! | TTTCAGGTTCCATTTCTTTT+TGG | - | chr1_1:32317547-32317566 | Msa0018940:intron | 30.0% |
| !! | TTCAGGTTCCATTTCTTTTT+GGG | - | chr1_1:32317548-32317567 | Msa0018940:intron | 30.0% |
| ! | TTGCAAGTGTTGTTATTCAT+TGG | - | chr1_1:32317590-32317609 | Msa0018940:intron | 30.0% |
| !! | CATTGGATTTTTAGAAGAAC+GGG | - | chr1_1:32317607-32317626 | Msa0018940:intron | 30.0% |
| TCGGGTTATATATTCAAATG+TGG | - | chr1_1:32317823-32317842 | Msa0018940:CDS | 30.0% | |
| CGGGTTATATATTCAAATGT+GGG | - | chr1_1:32317824-32317843 | Msa0018940:CDS | 30.0% | |
| ACGTAATAATGAACTTCCAA+AGG | - | chr1_1:32317985-32318004 | Msa0018940:intron | 30.0% | |
| ! | CATGTGGATATTTTTCATTG+AGG | + | chr1_1:32318106-32318125 | None:intergenic | 30.0% |
| TGTGACTTACTGAAAGATAA+TGG | - | chr1_1:32318167-32318186 | Msa0018940:intron | 30.0% | |
| TGTCAACGATTATATGAAAG+AGG | + | chr1_1:32318387-32318406 | None:intergenic | 30.0% | |
| AAAAACAGTATTGCAAAGGA+AGG | + | chr1_1:32318487-32318506 | None:intergenic | 30.0% | |
| CTAGAAAAACAGTATTGCAA+AGG | + | chr1_1:32318491-32318510 | None:intergenic | 30.0% | |
| ! | TAGAATCTTGCTTTAGGTTA+CGG | + | chr1_1:32318584-32318603 | None:intergenic | 30.0% |
| TAACACTTATCATGTAACGA+TGG | + | chr1_1:32318607-32318626 | None:intergenic | 30.0% | |
| ATCATAACTTTACCCATTTG+GGG | - | chr1_1:32318626-32318645 | Msa0018940:intron | 30.0% | |
| TCTTTACCGAACATATGATT+CGG | - | chr1_1:32318889-32318908 | Msa0018940:intron | 30.0% | |
| ACGCTCTTATAAGATCTATT+AGG | + | chr1_1:32318923-32318942 | None:intergenic | 30.0% | |
| ! | AATAGATCTTATAAGAGCGT+AGG | - | chr1_1:32318923-32318942 | Msa0018940:intron | 30.0% |
| ! | GTGTTCTGAATAAACTCTTT+AGG | - | chr1_1:32318945-32318964 | Msa0018940:intron | 30.0% |
| !! | ATAATGACAACTTTCTGGTT+AGG | - | chr1_1:32319178-32319197 | Msa0018940:intron | 30.0% |
| ATCGATCAATGAACACTAAT+GGG | + | chr1_1:32319231-32319250 | None:intergenic | 30.0% | |
| AATCGATCAATGAACACTAA+TGG | + | chr1_1:32319232-32319251 | None:intergenic | 30.0% | |
| CGAAATGTAAGATTTCTAAC+TGG | - | chr1_1:32319375-32319394 | Msa0018940:intron | 30.0% | |
| CCATATTTGACACATTAGAA+AGG | + | chr1_1:32319532-32319551 | None:intergenic | 30.0% | |
| CCTTTCTAATGTGTCAAATA+TGG | - | chr1_1:32319529-32319548 | Msa0018940:exon | 30.0% | |
| AAAAGATCGAGAAAGAATAG+AGG | + | chr1_1:32319598-32319617 | None:intergenic | 30.0% | |
| !!! | GATCTTTTCTTGCTATTTAC+AGG | - | chr1_1:32319610-32319629 | Msa0018940:five_prime_UTR | 30.0% |
| ACATCATCTATGTCAGAAAA+TGG | + | chr1_1:32319691-32319710 | None:intergenic | 30.0% | |
| TAGCAATATAAGCTTTGCAA+AGG | - | chr1_1:32319739-32319758 | Msa0018940:five_prime_UTR | 30.0% | |
| TTGCAAAGGTAAATCTGAAA+TGG | - | chr1_1:32319753-32319772 | Msa0018940:five_prime_UTR | 30.0% | |
| !! | TGAAATTGTGAATTTGTTGC+AGG | - | chr1_1:32319821-32319840 | Msa0018940:five_prime_UTR | 30.0% |
| ! | AATTTTGTTACTCAGGAAAC+CGG | + | chr1_1:32319857-32319876 | None:intergenic | 30.0% |
| ! | AATGGAGAATTTTGTTACTC+AGG | + | chr1_1:32319864-32319883 | None:intergenic | 30.0% |
| ACAAAATTCTCCATTAGTTG+AGG | - | chr1_1:32319869-32319888 | Msa0018940:five_prime_UTR | 30.0% | |
| ATGTGTATGATATGTAGATC+AGG | - | chr1_1:32319945-32319964 | Msa0018940:five_prime_UTR | 30.0% | |
| ACTCAATTACTTTCATGGAA+GGG | + | chr1_1:32319980-32319999 | None:intergenic | 30.0% | |
| TCGGAAAATTGTTGAAGTGA+TGG | + | chr1_1:32313562-32313581 | None:intergenic | 35.0% | |
| ATCAACCTTGATGAAATCCT+GGG | + | chr1_1:32313622-32313641 | None:intergenic | 35.0% | |
| AGACTGTTGTAAGAGTAAAG+GGG | + | chr1_1:32313829-32313848 | None:intergenic | 35.0% | |
| GAAAATGCGAAGAGTTTGAA+TGG | + | chr1_1:32313941-32313960 | None:intergenic | 35.0% | |
| ! | AGGAATTGGAGTTTTCTTTC+CGG | + | chr1_1:32313994-32314013 | None:intergenic | 35.0% |
| AGTAGATTGGGAAATGAAGT+CGG | + | chr1_1:32314043-32314062 | None:intergenic | 35.0% | |
| !!! | TTCTCGGAAGGTATTGATTT+TGG | - | chr1_1:32314202-32314221 | Msa0018940:intron | 35.0% |
| TGTTTGTTCTTGCAGTTCAA+AGG | - | chr1_1:32314345-32314364 | Msa0018940:intron | 35.0% | |
| AAAGGATTGGAAATTTGCGT+CGG | - | chr1_1:32314363-32314382 | Msa0018940:intron | 35.0% | |
| TGTTAAAGAGCTTCCAGATA+AGG | - | chr1_1:32314393-32314412 | Msa0018940:intron | 35.0% | |
| CAGTGAACAAAAACCTTATC+TGG | + | chr1_1:32314409-32314428 | None:intergenic | 35.0% | |
| ! | CTTGGTGCAATTGTAGTTTA+AGG | - | chr1_1:32314688-32314707 | Msa0018940:intron | 35.0% |
| TTTGTTTACTCGGAATTCGA+CGG | - | chr1_1:32314781-32314800 | Msa0018940:intron | 35.0% | |
| TTTGGACATCCTTCTTTCTT+GGG | - | chr1_1:32314891-32314910 | Msa0018940:intron | 35.0% | |
| TGAGTTATATTGTCCAGTGT+GGG | - | chr1_1:32314949-32314968 | Msa0018940:intron | 35.0% | |
| TTTCTCATCTTCTTTCACTC+AGG | - | chr1_1:32315000-32315019 | Msa0018940:intron | 35.0% | |
| GTTATGCTTTACTAGTCACA+GGG | + | chr1_1:32315259-32315278 | None:intergenic | 35.0% | |
| !! | CTACAAAGAAAAGTGTCAAC+AGG | + | chr1_1:32315281-32315300 | None:intergenic | 35.0% |
| GAAAACAGAGTCCTTTGTAT+TGG | - | chr1_1:32315334-32315353 | Msa0018940:intron | 35.0% | |
| !! | TTCAAATTTGCTAAAGGGTG+TGG | + | chr1_1:32315400-32315419 | None:intergenic | 35.0% |
| TTTCTGACATATGTTGGAGA+TGG | - | chr1_1:32315482-32315501 | Msa0018940:CDS | 35.0% | |
| ATTGAACTCTTAGGTCATTG+AGG | - | chr1_1:32315649-32315668 | Msa0018940:CDS | 35.0% | |
| TTATTGCCTGAATCCTGAAT+AGG | + | chr1_1:32315785-32315804 | None:intergenic | 35.0% | |
| AGGCAATAAAGAAAGTAAGG+TGG | - | chr1_1:32315796-32315815 | Msa0018940:CDS | 35.0% | |
| GACTCAATAGGTACAATATG+TGG | - | chr1_1:32315818-32315837 | Msa0018940:intron | 35.0% | |
| ! | GTTTCATTAGTCTAGTGATG+GGG | - | chr1_1:32315937-32315956 | Msa0018940:CDS | 35.0% |
| ATGGGGATTAAAGAGACTAT+TGG | - | chr1_1:32315954-32315973 | Msa0018940:CDS | 35.0% | |
| ! | AAAGGACTTGACTAGTTCAA+AGG | + | chr1_1:32316095-32316114 | None:intergenic | 35.0% |
| TAATGACACTAGATATGCAC+TGG | + | chr1_1:32316342-32316361 | None:intergenic | 35.0% | |
| CAGTATTACGTTGCAATCTT+TGG | - | chr1_1:32316388-32316407 | Msa0018940:intron | 35.0% | |
| AGCCTTAAAACCTAATGTTG+TGG | - | chr1_1:32316468-32316487 | Msa0018940:intron | 35.0% | |
| GTACCCAAAGTCAATCATAA+AGG | - | chr1_1:32316545-32316564 | Msa0018940:intron | 35.0% | |
| ! | CAACCCTTTATGATTGACTT+TGG | + | chr1_1:32316552-32316571 | None:intergenic | 35.0% |
| CAAAGTCAATCATAAAGGGT+TGG | - | chr1_1:32316550-32316569 | Msa0018940:intron | 35.0% | |
| TTAGAGCGAATGACAGTTTA+TGG | - | chr1_1:32317274-32317293 | Msa0018940:intron | 35.0% | |
| TAGAGCGAATGACAGTTTAT+GGG | - | chr1_1:32317275-32317294 | Msa0018940:intron | 35.0% | |
| !! | ATGGGTTTGGTTTGATAGAT+TGG | - | chr1_1:32317293-32317312 | Msa0018940:intron | 35.0% |
| ! | TCAGGTTCCATTTCTTTTTG+GGG | - | chr1_1:32317549-32317568 | Msa0018940:intron | 35.0% |
| ! | GATTATGTCATGTTTTGTGC+AGG | - | chr1_1:32317777-32317796 | Msa0018940:CDS | 35.0% |
| AAACTTAAGATATCGTTGGC+TGG | - | chr1_1:32317945-32317964 | Msa0018940:CDS | 35.0% | |
| GTGATGTACATCTATTTGGT+TGG | - | chr1_1:32318066-32318085 | Msa0018940:intron | 35.0% | |
| !! | TACATCTATTTGGTTGGTAG+TGG | - | chr1_1:32318072-32318091 | Msa0018940:intron | 35.0% |
| !! | ACATCTATTTGGTTGGTAGT+GGG | - | chr1_1:32318073-32318092 | Msa0018940:intron | 35.0% |
| TGCTCTTCATATACAACATG+TGG | + | chr1_1:32318122-32318141 | None:intergenic | 35.0% | |
| !! | TGTATATGAAGAGCATTGCA+AGG | - | chr1_1:32318127-32318146 | Msa0018940:intron | 35.0% |
| TGAAAGAGGAAAACAATGGA+AGG | + | chr1_1:32318373-32318392 | None:intergenic | 35.0% | |
| GTTAGGAGATACCATCAAAA+TGG | - | chr1_1:32319195-32319214 | Msa0018940:intron | 35.0% | |
| ! | GTGTTCATTGATCGATTCAT+AGG | - | chr1_1:32319235-32319254 | Msa0018940:CDS | 35.0% |
| ! | TTCATTGATCGATTCATAGG+TGG | - | chr1_1:32319238-32319257 | Msa0018940:CDS | 35.0% |
| TTGGACAATATAGTCATGCA+TGG | - | chr1_1:32319331-32319350 | Msa0018940:intron | 35.0% | |
| CAAAGACCAAATCTCACATA+TGG | - | chr1_1:32319634-32319653 | Msa0018940:five_prime_UTR | 35.0% | |
| !! | ATTGTGAATTTGTTGCAGGA+TGG | - | chr1_1:32319825-32319844 | Msa0018940:five_prime_UTR | 35.0% |
| CAATTCTTCACCTCAACTAA+TGG | + | chr1_1:32319882-32319901 | None:intergenic | 35.0% | |
| CTCAATTACTTTCATGGAAG+GGG | + | chr1_1:32319979-32319998 | None:intergenic | 35.0% | |
| GACTCAATTACTTTCATGGA+AGG | + | chr1_1:32319981-32320000 | None:intergenic | 35.0% | |
| !! | TGCTGACTCAATTACTTTCA+TGG | + | chr1_1:32319985-32320004 | None:intergenic | 35.0% |
| GGAGTTGCAGAATATGAACT+GGG | + | chr1_1:32313541-32313560 | None:intergenic | 40.0% | |
| TGGAGTTGCAGAATATGAAC+TGG | + | chr1_1:32313542-32313561 | None:intergenic | 40.0% | |
| CATCAACCTTGATGAAATCC+TGG | + | chr1_1:32313623-32313642 | None:intergenic | 40.0% | |
| AACAGTCTTTCTTCCTTCTC+AGG | - | chr1_1:32313841-32313860 | Msa0018940:intron | 40.0% | |
| ! | GTAGTTGTTGTTACCTGAGA+AGG | + | chr1_1:32313857-32313876 | None:intergenic | 40.0% |
| AAACGATGGGGTAGTTATGT+GGG | + | chr1_1:32313880-32313899 | None:intergenic | 40.0% | |
| ! | CGCATTTTCTCACACTTTCT+CGG | - | chr1_1:32313952-32313971 | Msa0018940:CDS | 40.0% |
| ! | GCATTTTCTCACACTTTCTC+GGG | - | chr1_1:32313953-32313972 | Msa0018940:CDS | 40.0% |
| CGGGAAAAAATTTCTCTTCC+CGG | - | chr1_1:32313972-32313991 | Msa0018940:CDS | 40.0% | |
| ! | GGAATTGGAGTTTTCTTTCC+GGG | + | chr1_1:32313993-32314012 | None:intergenic | 40.0% |
| ATCGGGAAGGAAAAAGGAAT+TGG | + | chr1_1:32314008-32314027 | None:intergenic | 40.0% | |
| TTCATTCCTCGTTGATCCTA+TGG | - | chr1_1:32314068-32314087 | Msa0018940:intron | 40.0% | |
| ! | ATTTGGAACTCCAAACATCG+CGG | + | chr1_1:32314134-32314153 | None:intergenic | 40.0% |
| GGAAGAAGAATCAGAGGATT+TGG | + | chr1_1:32314151-32314170 | None:intergenic | 40.0% | |
| CATTGACCATGACAACAAGA+TGG | + | chr1_1:32314179-32314198 | None:intergenic | 40.0% | |
| ! | CATCTTGTTGTCATGGTCAA+TGG | - | chr1_1:32314177-32314196 | Msa0018940:CDS | 40.0% |
| GTCATGGTCAATGGAATTCT+CGG | - | chr1_1:32314186-32314205 | Msa0018940:CDS | 40.0% | |
| GTTCTTGCAGTTCAAAGGAT+TGG | - | chr1_1:32314350-32314369 | Msa0018940:intron | 40.0% | |
| ! | TGCAAAGTGCTAAGACACTA+AGG | + | chr1_1:32314617-32314636 | None:intergenic | 40.0% |
| ATGTCCAAAGCTTGTCAACT+CGG | + | chr1_1:32314880-32314899 | None:intergenic | 40.0% | |
| CTTTGGACATCCTTCTTTCT+TGG | - | chr1_1:32314890-32314909 | Msa0018940:intron | 40.0% | |
| TTGGACATCCTTCTTTCTTG+GGG | - | chr1_1:32314892-32314911 | Msa0018940:intron | 40.0% | |
| CTGAGTTATATTGTCCAGTG+TGG | - | chr1_1:32314948-32314967 | Msa0018940:intron | 40.0% | |
| ! | ACAGAATTTAAAGCCCACAC+TGG | + | chr1_1:32314965-32314984 | None:intergenic | 40.0% |
| GTGTCTAAGCATACACTAGA+TGG | - | chr1_1:32315036-32315055 | Msa0018940:intron | 40.0% | |
| TAAGCATACACTAGATGGTG+TGG | - | chr1_1:32315041-32315060 | Msa0018940:intron | 40.0% | |
| GGTTATGCTTTACTAGTCAC+AGG | + | chr1_1:32315260-32315279 | None:intergenic | 40.0% | |
| ! | TTGAAGTATCTGGGCTTCAT+TGG | - | chr1_1:32315415-32315434 | Msa0018940:intron | 40.0% |
| ACATTCAGTTGGAGGATTAG+TGG | - | chr1_1:32315715-32315734 | Msa0018940:intron | 40.0% | |
| TTAGTGGCACGATATGCTAT+TGG | - | chr1_1:32315731-32315750 | Msa0018940:intron | 40.0% | |
| TAGTGGCACGATATGCTATT+GGG | - | chr1_1:32315732-32315751 | Msa0018940:intron | 40.0% | |
| ATGCTATTGGGAAGCTGTAT+AGG | - | chr1_1:32315744-32315763 | Msa0018940:intron | 40.0% | |
| AACGAACCTATTCAGGATTC+AGG | - | chr1_1:32315776-32315795 | Msa0018940:CDS | 40.0% | |
| ! | GAAAGTAAGGTGGACTCAAT+AGG | - | chr1_1:32315806-32315825 | Msa0018940:CDS | 40.0% |
| AATAGGTACAATATGTGGCC+TGG | - | chr1_1:32315823-32315842 | Msa0018940:intron | 40.0% | |
| TTACGAAATTCATTGCCTCC+AGG | + | chr1_1:32315844-32315863 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGATGAAAGA+GGG | + | chr1_1:32316045-32316064 | None:intergenic | 40.0% | |
| TGGAACGGTTTCTCGTTATT+AGG | - | chr1_1:32316236-32316255 | Msa0018940:intron | 40.0% | |
| ! | GGCCACAACATTAGGTTTTA+AGG | + | chr1_1:32316473-32316492 | None:intergenic | 40.0% |
| ACAACGTATAGTGAGGGTTT+GGG | + | chr1_1:32317209-32317228 | None:intergenic | 40.0% | |
| AACAACGTATAGTGAGGGTT+TGG | + | chr1_1:32317210-32317229 | None:intergenic | 40.0% | |
| CGAATGACAGTTTATGGGTT+TGG | - | chr1_1:32317280-32317299 | Msa0018940:intron | 40.0% | |
| GCAGTTACCCCAAAAAGAAA+TGG | + | chr1_1:32317559-32317578 | None:intergenic | 40.0% | |
| ! | AGGTTTTCCTTCATCGTCAT+CGG | + | chr1_1:32317650-32317669 | None:intergenic | 40.0% |
| TCAATCATGCGTTTGAGCAA+TGG | + | chr1_1:32317673-32317692 | None:intergenic | 40.0% | |
| CGCATGATTGAAGACTATGA+TGG | - | chr1_1:32317682-32317701 | Msa0018940:intron | 40.0% | |
| !! | AATGGCTCTGACAAGATAGA+AGG | - | chr1_1:32318185-32318204 | Msa0018940:intron | 40.0% |
| TCTTTCACACTGCTCTTACA+TGG | - | chr1_1:32318343-32318362 | Msa0018940:intron | 40.0% | |
| CGATGGTAGAATCTTGCTTT+AGG | + | chr1_1:32318590-32318609 | None:intergenic | 40.0% | |
| ! | TAACTTTACCCATTTGGGGT+TGG | - | chr1_1:32318630-32318649 | Msa0018940:intron | 40.0% |
| !! | AGCTTGCTCTGGCTTTAAAT+GGG | - | chr1_1:32318747-32318766 | Msa0018940:intron | 40.0% |
| AAAACTCAGTATCCGATCCA+AGG | + | chr1_1:32318819-32318838 | None:intergenic | 40.0% | |
| TGGGTTCCGAATCATATGTT+CGG | + | chr1_1:32318898-32318917 | None:intergenic | 40.0% | |
| ACTGGAATGAAAACTTGCAG+AGG | - | chr1_1:32319393-32319412 | Msa0018940:intron | 40.0% | |
| AGGTTTGTCTTCTGTGTCAT+GGG | - | chr1_1:32319426-32319445 | Msa0018940:CDS | 40.0% | |
| CAAATCTCTGTCTGCTACTA+TGG | + | chr1_1:32319471-32319490 | None:intergenic | 40.0% | |
| TGCTGCTCATAGTGTAATTC+AGG | - | chr1_1:32319489-32319508 | Msa0018940:CDS | 40.0% | |
| TTGACACATTAGAAAGGGCA+GGG | + | chr1_1:32319526-32319545 | None:intergenic | 40.0% | |
| TTTGACACATTAGAAAGGGC+AGG | + | chr1_1:32319527-32319546 | None:intergenic | 40.0% | |
| GACCAAATCTCACATATGGA+AGG | - | chr1_1:32319638-32319657 | Msa0018940:five_prime_UTR | 40.0% | |
| CACCTTCCATATGTGAGATT+TGG | + | chr1_1:32319643-32319662 | None:intergenic | 40.0% | |
| CTACATGTTCTTCACTTCCC+AGG | - | chr1_1:32313602-32313621 | Msa0018940:three_prime_UTR | 45.0% | |
| CACTTCCCAGGATTTCATCA+AGG | - | chr1_1:32313614-32313633 | Msa0018940:three_prime_UTR | 45.0% | |
| AACCAACGACTCTGTTTGCT+CGG | - | chr1_1:32313710-32313729 | Msa0018940:three_prime_UTR | 45.0% | |
| CTGTTGTAAGAGTAAAGGGG+CGG | + | chr1_1:32313826-32313845 | None:intergenic | 45.0% | |
| AACGATGGGGTAGTTATGTG+GGG | + | chr1_1:32313879-32313898 | None:intergenic | 45.0% | |
| GAAACGATGGGGTAGTTATG+TGG | + | chr1_1:32313881-32313900 | None:intergenic | 45.0% | |
| GAAGAGATCGGGAAGGAAAA+AGG | + | chr1_1:32314014-32314033 | None:intergenic | 45.0% | |
| ! | AGTCGGTGTTTGGAAGAGAT+CGG | + | chr1_1:32314026-32314045 | None:intergenic | 45.0% |
| ! | TGGGAAATGAAGTCGGTGTT+TGG | + | chr1_1:32314036-32314055 | None:intergenic | 45.0% |
| TCTTCTCCATAGGATCAACG+AGG | + | chr1_1:32314077-32314096 | None:intergenic | 45.0% | |
| CACACATCGTTCTTCTCCAT+AGG | + | chr1_1:32314087-32314106 | None:intergenic | 45.0% | |
| GAAGAACGATGTGTGCACAT+CGG | - | chr1_1:32314092-32314111 | Msa0018940:intron | 45.0% | |
| GACCATGACAACAAGATGGT+CGG | + | chr1_1:32314175-32314194 | None:intergenic | 45.0% | |
| TGGTCAATGGAATTCTCGGA+AGG | - | chr1_1:32314190-32314209 | Msa0018940:CDS | 45.0% | |
| ACTAGATGGTGTGGACGTAA+TGG | - | chr1_1:32315050-32315069 | Msa0018940:intron | 45.0% | |
| CTAGATGGTGTGGACGTAAT+GGG | - | chr1_1:32315051-32315070 | Msa0018940:intron | 45.0% | |
| TGAATAGGTTCGTTTCCAGG+TGG | + | chr1_1:32315770-32315789 | None:intergenic | 45.0% | |
| ACCTGGAAACGAACCTATTC+AGG | - | chr1_1:32315769-32315788 | Msa0018940:intron | 45.0% | |
| TCCTGAATAGGTTCGTTTCC+AGG | + | chr1_1:32315773-32315792 | None:intergenic | 45.0% | |
| AACTGTTGCTACACCTCATC+TGG | - | chr1_1:32315862-32315881 | Msa0018940:intron | 45.0% | |
| ACTGTTGCTACACCTCATCT+GGG | - | chr1_1:32315863-32315882 | Msa0018940:intron | 45.0% | |
| CATTACACACCAGACTACAG+AGG | + | chr1_1:32316010-32316029 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGATGAAAG+AGG | + | chr1_1:32316046-32316065 | None:intergenic | 45.0% | |
| ATTTGTCCGGATTTGAACCC+AGG | - | chr1_1:32317142-32317161 | Msa0018940:intron | 45.0% | |
| ! | GATAAGGAGTTTGAGGTCCT+GGG | + | chr1_1:32317162-32317181 | None:intergenic | 45.0% |
| GCTAAGGGATAAGGAGTTTG+AGG | + | chr1_1:32317169-32317188 | None:intergenic | 45.0% | |
| ! | GTTCAACTGGTCTGAGCTAA+GGG | + | chr1_1:32317184-32317203 | None:intergenic | 45.0% |
| ! | AGTTCAACTGGTCTGAGCTA+AGG | + | chr1_1:32317185-32317204 | None:intergenic | 45.0% |
| !! | GGATTTTTAGAAGAACGGGC+CGG | - | chr1_1:32317611-32317630 | Msa0018940:intron | 45.0% |
| CATCGGTAAGGAAAAGATGC+CGG | + | chr1_1:32317633-32317652 | None:intergenic | 45.0% | |
| TTCCTTACCGATGACGATGA+AGG | - | chr1_1:32317640-32317659 | Msa0018940:intron | 45.0% | |
| TTCCTTCATCGTCATCGGTA+AGG | + | chr1_1:32317645-32317664 | None:intergenic | 45.0% | |
| ATCATGCGTTTGAGCAATGG+AGG | + | chr1_1:32317670-32317689 | None:intergenic | 45.0% | |
| CATTGCGCTCTTTCAAACGT+CGG | - | chr1_1:32317804-32317823 | Msa0018940:CDS | 45.0% | |
| ATTGCGCTCTTTCAAACGTC+GGG | - | chr1_1:32317805-32317824 | Msa0018940:CDS | 45.0% | |
| !! | TCTATTTGGTTGGTAGTGGG+AGG | - | chr1_1:32318076-32318095 | Msa0018940:intron | 45.0% |
| TCACACTGCTCTTACATGGT+TGG | - | chr1_1:32318347-32318366 | Msa0018940:intron | 45.0% | |
| !! | GAGCTTGCTCTGGCTTTAAA+TGG | - | chr1_1:32318746-32318765 | Msa0018940:intron | 45.0% |
| !! | GCTTGCTCTGGCTTTAAATG+GGG | - | chr1_1:32318748-32318767 | Msa0018940:intron | 45.0% |
| !! | ATTGATCCCCTCGGATTAGT+CGG | - | chr1_1:32318792-32318811 | Msa0018940:intron | 45.0% |
| ATGAAAACTTGCAGAGGAGC+TGG | - | chr1_1:32319399-32319418 | Msa0018940:intron | 45.0% | |
| CAGGTTTGTCTTCTGTGTCA+TGG | - | chr1_1:32319425-32319444 | Msa0018940:CDS | 45.0% | |
| TGTTGCAGGATGGAAACAAC+CGG | - | chr1_1:32319835-32319854 | Msa0018940:five_prime_UTR | 45.0% | |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_1:32316664-32316683 | None:intergenic | 5.0% |
| !! | TAATTTATATTAATATGTAA+GGG | - | chr1_1:32316745-32316764 | Msa0018940:intron | 5.0% |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_1:32316664-32316683 | None:intergenic | 5.0% |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_1:32316664-32316683 | None:intergenic | 5.0% |
| !! | TAATTTATATTAATATGTAA+GGG | - | chr1_1:32316745-32316764 | Msa0018940:intron | 5.0% |
| !! | ATTAATAATAATGTATATAT+AGG | + | chr1_1:32316664-32316683 | None:intergenic | 5.0% |
| AACCGAGCAAACAGAGTCGT+TGG | + | chr1_1:32313715-32313734 | None:intergenic | 50.0% | |
| ACTCTGTTTGCTCGGTTGCT+CGG | - | chr1_1:32313718-32313737 | Msa0018940:three_prime_UTR | 50.0% | |
| GTGTTTGGAAGAGATCGGGA+AGG | + | chr1_1:32314021-32314040 | None:intergenic | 50.0% | |
| ! | GTCGGTGTTTGGAAGAGATC+GGG | + | chr1_1:32314025-32314044 | None:intergenic | 50.0% |
| TGCACATCGGAATCCATCGA+TGG | - | chr1_1:32314105-32314124 | Msa0018940:intron | 50.0% | |
| CATGACAACAAGATGGTCGG+CGG | + | chr1_1:32314172-32314191 | None:intergenic | 50.0% | |
| ! | GCAACCGAGTTGACAAGCTT+TGG | - | chr1_1:32314873-32314892 | Msa0018940:intron | 50.0% |
| GACATCCTTCTTTCTTGGGG+AGG | - | chr1_1:32314895-32314914 | Msa0018940:intron | 50.0% | |
| TCAAGCCTCCCCAAGAAAGA+AGG | + | chr1_1:32314903-32314922 | None:intergenic | 50.0% | |
| AGGTACAATATGTGGCCTGG+AGG | - | chr1_1:32315826-32315845 | Msa0018940:intron | 50.0% | |
| CTGTTGCTACACCTCATCTG+GGG | - | chr1_1:32315864-32315883 | Msa0018940:intron | 50.0% | |
| ! | TACACCTCATCTGGGGTCAA+GGG | - | chr1_1:32315871-32315890 | Msa0018940:intron | 50.0% |
| GCTTAGTGTCCTCTGTAGTC+TGG | - | chr1_1:32315998-32316017 | Msa0018940:CDS | 50.0% | |
| TGAGGTCCTGGGTTCAAATC+CGG | + | chr1_1:32317151-32317170 | None:intergenic | 50.0% | |
| ! | GGATAAGGAGTTTGAGGTCC+TGG | + | chr1_1:32317163-32317182 | None:intergenic | 50.0% |
| CTGGTCTGAGCTAAGGGATA+AGG | + | chr1_1:32317178-32317197 | None:intergenic | 50.0% | |
| GAGGGTTTGGGTAGTTCAAC+TGG | + | chr1_1:32317197-32317216 | None:intergenic | 50.0% | |
| TAGCGGCACATTCATCTCTG+TGG | - | chr1_1:32317407-32317426 | Msa0018940:intron | 50.0% | |
| AAGATCCCAAGCCAACCACT+AGG | + | chr1_1:32318656-32318675 | None:intergenic | 50.0% | |
| !! | TAGTGGTTGGCTTGGGATCT+TGG | - | chr1_1:32318655-32318674 | Msa0018940:intron | 50.0% |
| ! | CTTGGAGTTTGCTCCTCTCA+AGG | - | chr1_1:32318673-32318692 | Msa0018940:intron | 50.0% |
| TTTGCTCCTCTCAAGGTCTC+AGG | - | chr1_1:32318680-32318699 | Msa0018940:intron | 50.0% | |
| ATCGAACCTGAGACCTTGAG+AGG | + | chr1_1:32318689-32318708 | None:intergenic | 50.0% | |
| ! | ATTCCCGCTGGTGCCAATTT+CGG | - | chr1_1:32318707-32318726 | Msa0018940:intron | 50.0% |
| ATGGACTTGCCCACCGAAAT+TGG | + | chr1_1:32318723-32318742 | None:intergenic | 50.0% | |
| ! | AGTCCATACAGAGCTTGCTC+TGG | - | chr1_1:32318736-32318755 | Msa0018940:intron | 50.0% |
| AAGCCAGAGCAAGCTCTGTA+TGG | + | chr1_1:32318742-32318761 | None:intergenic | 50.0% | |
| !! | GGATTAGTCGGTCCTTGGAT+CGG | - | chr1_1:32318804-32318823 | Msa0018940:intron | 50.0% |
| AACATCGCGGCTTCCATCGA+TGG | + | chr1_1:32314121-32314140 | None:intergenic | 55.0% | |
| TCGATGGAAGCCGCGATGTT+TGG | - | chr1_1:32314121-32314140 | Msa0018940:CDS | 55.0% | |
| GTCGGCGGAAGAAGAATCAG+AGG | + | chr1_1:32314157-32314176 | None:intergenic | 55.0% | |
| ! | CGCCGACCATCTTGTTGTCA+TGG | - | chr1_1:32314170-32314189 | Msa0018940:CDS | 55.0% |
| !! | GGACGTAATGGGCGAGAGAT+TGG | - | chr1_1:32315062-32315081 | Msa0018940:intron | 55.0% |
| AATGGGCGAGAGATTGGCAG+AGG | - | chr1_1:32315068-32315087 | Msa0018940:intron | 55.0% | |
| ! | CTACACCTCATCTGGGGTCA+AGG | - | chr1_1:32315870-32315889 | Msa0018940:intron | 55.0% |
| ! | ACACCTCATCTGGGGTCAAG+GGG | - | chr1_1:32315872-32315891 | Msa0018940:intron | 55.0% |
| ACGACTGCGGCCACAACATT+AGG | + | chr1_1:32316481-32316500 | None:intergenic | 55.0% | |
| TAATGTTGTGGCCGCAGTCG+TGG | - | chr1_1:32316480-32316499 | Msa0018940:intron | 55.0% | |
| CCACTAGGCCAACCCCAAAT+GGG | + | chr1_1:32318641-32318660 | None:intergenic | 55.0% | |
| ACCACTAGGCCAACCCCAAA+TGG | + | chr1_1:32318642-32318661 | None:intergenic | 55.0% | |
| !! | TTTGGGGTTGGCCTAGTGGT+TGG | - | chr1_1:32318642-32318661 | Msa0018940:intron | 55.0% |
| !! | GTTGGCCTAGTGGTTGGCTT+GGG | - | chr1_1:32318648-32318667 | Msa0018940:intron | 55.0% |
| TTAAATGGGGTCCCCGCAAG+TGG | - | chr1_1:32318761-32318780 | Msa0018940:intron | 55.0% | |
| TAAATGGGGTCCCCGCAAGT+GGG | - | chr1_1:32318762-32318781 | Msa0018940:intron | 55.0% | |
| CAAGGACCGACTAATCCGAG+GGG | + | chr1_1:32318801-32318820 | None:intergenic | 55.0% | |
| CCAAGGACCGACTAATCCGA+GGG | + | chr1_1:32318802-32318821 | None:intergenic | 55.0% | |
| TCCAAGGACCGACTAATCCG+AGG | + | chr1_1:32318803-32318822 | None:intergenic | 55.0% | |
| CTTGCAGAGGAGCTGGTAAC+AGG | - | chr1_1:32319406-32319425 | Msa0018940:intron | 55.0% | |
| GGGAAGCTGTATAGGCCACC+TGG | - | chr1_1:32315752-32315771 | Msa0018940:intron | 60.0% | |
| TTGCCCCTTGACCCCAGATG+AGG | + | chr1_1:32315878-32315897 | None:intergenic | 60.0% | |
| GGGGTCAAGGGGCAATAAGC+AGG | - | chr1_1:32315883-32315902 | Msa0018940:intron | 60.0% | |
| AAGGTCCGCAACCACGACTG+CGG | + | chr1_1:32316494-32316513 | None:intergenic | 60.0% | |
| !! | CCCATTTGGGGTTGGCCTAG+TGG | - | chr1_1:32318638-32318657 | Msa0018940:intron | 60.0% |
| !! | GGTTGGCCTAGTGGTTGGCT+TGG | - | chr1_1:32318647-32318666 | Msa0018940:intron | 60.0% |
| GTCTCAGGTTCGATTCCCGC+TGG | - | chr1_1:32318695-32318714 | Msa0018940:intron | 60.0% | |
| CCACCGAAATTGGCACCAGC+GGG | + | chr1_1:32318713-32318732 | None:intergenic | 60.0% | |
| CCCACCGAAATTGGCACCAG+CGG | + | chr1_1:32318714-32318733 | None:intergenic | 60.0% | |
| ! | CCGCTGGTGCCAATTTCGGT+GGG | - | chr1_1:32318711-32318730 | Msa0018940:intron | 60.0% |
| TCAATCCCACCGCCCACTTG+CGG | + | chr1_1:32318777-32318796 | None:intergenic | 60.0% | |
| !! | CCCTCGGATTAGTCGGTCCT+TGG | - | chr1_1:32318799-32318818 | Msa0018940:intron | 60.0% |
| GGGCGAGAGATTGGCAGAGG+AGG | - | chr1_1:32315071-32315090 | Msa0018940:intron | 65.0% | |
| TGTGGCCGCAGTCGTGGTTG+CGG | - | chr1_1:32316486-32316505 | Msa0018940:intron | 65.0% | |
| ! | CCCGCTGGTGCCAATTTCGG+TGG | - | chr1_1:32318710-32318729 | Msa0018940:intron | 65.0% |
| AATCCCACCGCCCACTTGCG+GGG | + | chr1_1:32318775-32318794 | None:intergenic | 65.0% | |
| CAATCCCACCGCCCACTTGC+GGG | + | chr1_1:32318776-32318795 | None:intergenic | 65.0% | |
| GGCGGTGGGATTGATCCCCT+CGG | - | chr1_1:32318783-32318802 | Msa0018940:intron | 65.0% | |
| ATGGGGTCCCCGCAAGTGGG+CGG | - | chr1_1:32318765-32318784 | Msa0018940:intron | 70.0% | |
| GGTCCCCGCAAGTGGGCGGT+GGG | - | chr1_1:32318769-32318788 | Msa0018940:intron | 75.0% | |
| ! | GGGTCCCCGCAAGTGGGCGG+TGG | - | chr1_1:32318768-32318787 | Msa0018940:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 32313514 | 32320113 | 32313514 | ID=Msa0018940;Name=Msa0018940 |
| chr1_1 | mRNA | 32313514 | 32320113 | 32313514 | ID=Msa0018940-mRNA-1;Parent=Msa0018940;Name=Msa0018940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=573|1|1|1|0.9|0.90|11|328|354 |
| chr1_1 | exon | 32313514 | 32313784 | 32313514 | ID=Msa0018940-mRNA-1:exon:10495;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32313867 | 32313995 | 32313867 | ID=Msa0018940-mRNA-1:exon:10494;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32314117 | 32314214 | 32314117 | ID=Msa0018940-mRNA-1:exon:10493;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32315421 | 32315535 | 32315421 | ID=Msa0018940-mRNA-1:exon:10492;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32315621 | 32315673 | 32315621 | ID=Msa0018940-mRNA-1:exon:10491;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32315773 | 32315828 | 32315773 | ID=Msa0018940-mRNA-1:exon:10490;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32315911 | 32316074 | 32315911 | ID=Msa0018940-mRNA-1:exon:10489;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32317723 | 32317965 | 32317723 | ID=Msa0018940-mRNA-1:exon:10488;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32318535 | 32318605 | 32318535 | ID=Msa0018940-mRNA-1:exon:10487;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32319200 | 32319267 | 32319200 | ID=Msa0018940-mRNA-1:exon:10486;Parent=Msa0018940-mRNA-1 |
| chr1_1 | exon | 32319416 | 32320113 | 32319416 | ID=Msa0018940-mRNA-1:exon:10485;Parent=Msa0018940-mRNA-1 |
| chr1_1 | five_prime_UTR | 32319541 | 32320113 | 32319541 | ID=Msa0018940-mRNA-1:five_prime_utr;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32319416 | 32319540 | 32319416 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32319200 | 32319267 | 32319200 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32318535 | 32318605 | 32318535 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32317723 | 32317965 | 32317723 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32315911 | 32316074 | 32315911 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32315773 | 32315828 | 32315773 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32315621 | 32315673 | 32315621 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32315421 | 32315535 | 32315421 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32314117 | 32314214 | 32314117 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | CDS | 32313924 | 32313995 | 32313924 | ID=Msa0018940-mRNA-1:cds;Parent=Msa0018940-mRNA-1 |
| chr1_1 | three_prime_UTR | 32313867 | 32313923 | 32313867 | ID=Msa0018940-mRNA-1:three_prime_utr;Parent=Msa0018940-mRNA-1 |
| chr1_1 | three_prime_UTR | 32313514 | 32313784 | 32313514 | ID=Msa0018940-mRNA-1:three_prime_utr;Parent=Msa0018940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
