Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418100 | XP_013460875.1 | 99.306 | 288 | 2 | 0 | 59 | 346 | 1 | 288 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418100 | A0A072UYR5 | 99.306 | 288 | 2 | 0 | 59 | 346 | 1 | 288 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0418100 | 0.817174 | 3.781849e-52 | -8.615850e-47 |
| Msa0037660 | Msa0418100 | 0.933576 | 1.519712e-95 | -8.615850e-47 |
| Msa0041780 | Msa0418100 | -0.800073 | 1.710396e-48 | -8.615850e-47 |
| Msa0044780 | Msa0418100 | -0.815447 | 9.203268e-52 | -8.615850e-47 |
| Msa0045620 | Msa0418100 | 0.834605 | 2.720678e-56 | -8.615850e-47 |
| Msa0050530 | Msa0418100 | 0.817328 | 3.490538e-52 | -8.615850e-47 |
| Msa0063190 | Msa0418100 | 0.810922 | 9.057866e-51 | -8.615850e-47 |
| Msa0075840 | Msa0418100 | 0.802224 | 6.208654e-49 | -8.615850e-47 |
| Msa0084990 | Msa0418100 | 0.808899 | 2.468859e-50 | -8.615850e-47 |
| Msa0091090 | Msa0418100 | -0.824549 | 7.601026e-54 | -8.615850e-47 |
| Msa0100600 | Msa0418100 | 0.815784 | 7.741085e-52 | -8.615850e-47 |
| Msa0100890 | Msa0418100 | 0.830891 | 2.274477e-55 | -8.615850e-47 |
| Msa0118150 | Msa0418100 | 0.805767 | 1.138451e-49 | -8.615850e-47 |
| Msa0177830 | Msa0418100 | 0.833295 | 5.790886e-56 | -8.615850e-47 |
| Msa0177970 | Msa0418100 | 0.828249 | 9.984513e-55 | -8.615850e-47 |
| Msa0183200 | Msa0418100 | -0.800258 | 1.568338e-48 | -8.615850e-47 |
| Msa0219840 | Msa0418100 | 0.814895 | 1.220097e-51 | -8.615850e-47 |
| Msa0418100 | Msa0428330 | -0.829060 | 6.357319e-55 | -8.615850e-47 |
| Msa0418100 | Msa0468360 | -0.803670 | 3.121086e-49 | -8.615850e-47 |
| Msa0418100 | Msa0477900 | 0.803895 | 2.802156e-49 | -8.615850e-47 |
| Msa0418100 | Msa0568290 | -0.818821 | 1.604852e-52 | -8.615850e-47 |
| Msa0418100 | Msa0572360 | 0.807004 | 6.246777e-50 | -8.615850e-47 |
| Msa0418100 | Msa0623310 | 0.829705 | 4.433033e-55 | -8.615850e-47 |
| Msa0418100 | Msa0659020 | -0.824059 | 9.909201e-54 | -8.615850e-47 |
| Msa0418100 | Msa0663290 | 0.818346 | 2.056820e-52 | -8.615850e-47 |
| Msa0418100 | Msa0664070 | 0.806249 | 9.014428e-50 | -8.615850e-47 |
| Msa0418100 | Msa0704780 | -0.801157 | 1.027945e-48 | -8.615850e-47 |
| Msa0418100 | Msa0732970 | 0.812022 | 5.224393e-51 | -8.615850e-47 |
| Msa0418100 | Msa0733240 | -0.806575 | 7.695782e-50 | -8.615850e-47 |
| Msa0418100 | Msa0742090 | -0.815575 | 8.616263e-52 | -8.615850e-47 |
| Msa0418100 | Msa0773960 | 0.804706 | 1.899167e-49 | -8.615850e-47 |
| Msa0418100 | Msa0774060 | 0.818439 | 1.959308e-52 | -8.615850e-47 |
| Msa0418100 | Msa0838670 | -0.801413 | 9.112449e-49 | -8.615850e-47 |
| Msa0418100 | Msa0842180 | 0.800878 | 1.172049e-48 | -8.615850e-47 |
| Msa0418100 | Msa0846900 | 0.813430 | 2.569507e-51 | -8.615850e-47 |
| Msa0418100 | Msa0852090 | -0.812622 | 3.864922e-51 | -8.615850e-47 |
| Msa0418100 | Msa0870020 | 0.831071 | 2.054667e-55 | -8.615850e-47 |
| Msa0418100 | Msa0903340 | 0.801003 | 1.105124e-48 | -8.615850e-47 |
| Msa0418100 | Msa0930770 | 0.802389 | 5.742879e-49 | -8.615850e-47 |
| Msa0418100 | Msa1021560 | 0.819433 | 1.164429e-52 | -8.615850e-47 |
| Msa0418100 | Msa1024570 | 0.807468 | 4.980890e-50 | -8.615850e-47 |
| Msa0418100 | Msa1033420 | 0.813404 | 2.604130e-51 | -8.615850e-47 |
| Msa0418100 | Msa1042300 | 0.808735 | 2.676162e-50 | -8.615850e-47 |
| Msa0418100 | Msa1118770 | -0.800738 | 1.252145e-48 | -8.615850e-47 |
| Msa0418100 | Msa1133440 | -0.812957 | 3.264286e-51 | -8.615850e-47 |
| Msa0418100 | Msa1199580 | -0.807668 | 4.516461e-50 | -8.615850e-47 |
| Msa0418100 | Msa1243630 | -0.817456 | 3.267675e-52 | -8.615850e-47 |
| Msa0418100 | Msa1244220 | -0.813541 | 2.429299e-51 | -8.615850e-47 |
| Msa0418100 | Msa1282300 | 0.822044 | 2.923353e-53 | -8.615850e-47 |
| Msa0418100 | Msa1308860 | 0.807448 | 5.030756e-50 | -8.615850e-47 |
| Msa0418100 | Msa1323260 | -0.810207 | 1.292563e-50 | -8.615850e-47 |
| Msa0418100 | Msa1328630 | -0.824367 | 8.385833e-54 | -8.615850e-47 |
| Msa0418100 | Msa1328720 | -0.806439 | 8.221440e-50 | -8.615850e-47 |
| Msa0418100 | Msa1334560 | 0.806275 | 8.901396e-50 | -8.615850e-47 |
| Msa0418100 | Msa1356450 | 0.806287 | 8.852583e-50 | -8.615850e-47 |
| Msa0418100 | Msa1368990 | 0.819695 | 1.014757e-52 | -8.615850e-47 |
| Msa0418100 | Msa1371800 | 0.833921 | 4.039086e-56 | -8.615850e-47 |
| Msa0418100 | Msa1376310 | 0.848317 | 6.621741e-60 | -8.615850e-47 |
| Msa0418100 | Msa1377140 | 0.806761 | 7.032033e-50 | -8.615850e-47 |
| Msa0418100 | Msa1385570 | 0.819612 | 1.060084e-52 | -8.615850e-47 |
| Msa0418100 | Msa1389310 | 0.815977 | 7.010966e-52 | -8.615850e-47 |
| Msa0418100 | Msa1398460 | 0.932105 | 1.401547e-94 | -8.615850e-47 |
| Msa0418100 | Msa1420830 | 0.812832 | 3.476209e-51 | -8.615850e-47 |
| Msa0418100 | Msa1447900 | 0.806603 | 7.592404e-50 | -8.615850e-47 |
| Msa0418100 | Msa1450630 | -0.878513 | 2.643378e-69 | -8.615850e-47 |
| Msa0418100 | Msa1453030 | 0.808264 | 3.373315e-50 | -8.615850e-47 |
| Msa0418100 | Msa1460970 | 0.825108 | 5.610275e-54 | -8.615850e-47 |
| Msa0240540 | Msa0418100 | 0.802376 | 5.777217e-49 | -8.615850e-47 |
| Msa0241040 | Msa0418100 | 0.814855 | 1.245691e-51 | -8.615850e-47 |
| Msa0276800 | Msa0418100 | -0.814414 | 1.559575e-51 | -8.615850e-47 |
| Msa0279000 | Msa0418100 | 0.806685 | 7.295366e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418100 | MtrunA17_Chr3g0115701 | 99.306 | 288 | 2 | 0 | 59 | 346 | 1 | 288 | 0.0 | 578 |
| Msa0418100 | MtrunA17_Chr3g0124021 | 59.672 | 305 | 95 | 7 | 62 | 346 | 3 | 299 | 5.39e-108 | 317 |
| Msa0418100 | MtrunA17_Chr8g0382291 | 47.231 | 307 | 120 | 9 | 64 | 343 | 4 | 295 | 9.94e-71 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418100 | AT1G35780.1 | 69.153 | 295 | 75 | 9 | 59 | 346 | 1 | 286 | 3.99e-124 | 358 |
| Msa0418100 | AT1G78150.1 | 66.897 | 290 | 78 | 4 | 59 | 346 | 1 | 274 | 2.74e-121 | 350 |
| Msa0418100 | AT1G78150.2 | 66.897 | 290 | 78 | 4 | 59 | 346 | 1 | 274 | 2.74e-121 | 350 |
| Msa0418100 | AT1G78150.3 | 60.815 | 319 | 78 | 5 | 59 | 346 | 1 | 303 | 5.41e-115 | 336 |
| Msa0418100 | AT4G39860.3 | 60.066 | 303 | 102 | 5 | 59 | 346 | 1 | 299 | 6.67e-112 | 328 |
| Msa0418100 | AT4G39860.4 | 60.066 | 303 | 102 | 5 | 59 | 346 | 1 | 299 | 6.67e-112 | 328 |
| Msa0418100 | AT4G39860.1 | 60.066 | 303 | 102 | 5 | 59 | 346 | 1 | 299 | 6.67e-112 | 328 |
| Msa0418100 | AT4G39860.2 | 59.736 | 303 | 102 | 6 | 59 | 346 | 1 | 298 | 2.74e-109 | 321 |
| Msa0418100 | AT1G35780.2 | 65.611 | 221 | 62 | 8 | 131 | 346 | 1 | 212 | 9.87e-81 | 245 |
| Msa0418100 | AT1G35780.4 | 65.611 | 221 | 62 | 8 | 131 | 346 | 1 | 212 | 9.87e-81 | 245 |
| Msa0418100 | AT1G35780.3 | 65.611 | 221 | 62 | 8 | 131 | 346 | 1 | 212 | 9.87e-81 | 245 |
| Msa0418100 | AT2G22270.1 | 44.214 | 337 | 126 | 15 | 60 | 346 | 4 | 328 | 6.71e-64 | 206 |
| Msa0418100 | AT2G22270.2 | 43.206 | 287 | 109 | 12 | 109 | 346 | 8 | 289 | 4.14e-52 | 174 |
Find 121 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTTGACCTTGTATTTC+TGG | 0.093210 | 3_2:+65761617 | Msa0418100:three_prime_UTR |
| GACCTTGTATTTCTGGGTTT+TGG | 0.124016 | 3_2:+65761624 | Msa0418100:three_prime_UTR |
| CTGACAGTTCTGCAAATTTC+TGG | 0.130552 | 3_2:-65761338 | None:intergenic |
| ATTGGCCGAGGTTTGATTTC+TGG | 0.198337 | 3_2:-65760860 | None:intergenic |
| AAATCTATGACGAGTGTTAA+TGG | 0.218715 | 3_2:-65761785 | None:intergenic |
| TTCATATACTGTCTTTGTTT+TGG | 0.233802 | 3_2:+65761559 | Msa0418100:three_prime_UTR |
| GGGTTGGCACTGCCATCCTC+TGG | 0.261646 | 3_2:-65760511 | None:intergenic |
| TCCAGTATGCGAGGAGTAAT+TGG | 0.289565 | 3_2:-65760878 | None:intergenic |
| GATTAATATCTTGACCAAAA+AGG | 0.312653 | 3_2:+65761669 | Msa0418100:three_prime_UTR |
| TCAGGAAACAACATATTTAA+AGG | 0.318062 | 3_2:+65761357 | Msa0418100:CDS |
| TGTTCTTTGGCGTGTGAATA+TGG | 0.319007 | 3_2:+65759240 | Msa0418100:CDS |
| GCCAATTACTCCTCGCATAC+TGG | 0.323326 | 3_2:+65760877 | Msa0418100:CDS |
| TTGCGCTGGTATAATTTGTT+AGG | 0.345832 | 3_2:+65761526 | Msa0418100:exon |
| GCTTGCTTAATGAAGTGATT+TGG | 0.352725 | 3_2:+65761739 | Msa0418100:three_prime_UTR |
| TATTAATCAAGGAACCTAAA+AGG | 0.361392 | 3_2:-65761654 | None:intergenic |
| TTATTTGACCTTGTATTTCT+GGG | 0.366244 | 3_2:+65761618 | Msa0418100:three_prime_UTR |
| TACCTGGTACATGCGAATTC+CGG | 0.384648 | 3_2:-65760548 | None:intergenic |
| GGGATCAGTAAGGTGGTGTT+TGG | 0.389584 | 3_2:+65759512 | Msa0418100:CDS |
| TAAGGTGGTGTTTGGAGGTC+AGG | 0.394145 | 3_2:+65759520 | Msa0418100:CDS |
| TAAAGGCGACTCTCCACCTT+TGG | 0.396203 | 3_2:+65761374 | Msa0418100:CDS |
| GGTTGGCACTGCCATCCTCT+GGG | 0.400803 | 3_2:-65760510 | None:intergenic |
| TATAAGATGAAGGAGATTAC+TGG | 0.401416 | 3_2:+65760451 | Msa0418100:CDS |
| TCACGCTGCTTGGCCACCTC+AGG | 0.402765 | 3_2:-65760737 | None:intergenic |
| CAACTGCAGATCTACTTGTT+TGG | 0.409333 | 3_2:+65759296 | Msa0418100:CDS |
| TTCCGCCACTCGTTCTCATC+AGG | 0.416604 | 3_2:+65759357 | Msa0418100:CDS |
| TCCACTGAGCTCACGCTGCT+TGG | 0.434899 | 3_2:-65760747 | None:intergenic |
| TTTGGTCAAGATATTAATCA+AGG | 0.435079 | 3_2:-65761665 | None:intergenic |
| AAATTGCAGCAAGCTATTGC+GGG | 0.436764 | 3_2:+65760653 | Msa0418100:intron |
| AATTTCTAGAAAGCCTTGTT+CGG | 0.448306 | 3_2:+65760426 | Msa0418100:intron |
| AACCCTTCTGCAAATAAAAC+CGG | 0.449099 | 3_2:+65760529 | Msa0418100:CDS |
| GGAATCAGTCATATCTCCTT+TGG | 0.451670 | 3_2:+65760674 | Msa0418100:CDS |
| CAGAAATTTGCAGAACTGTC+AGG | 0.455797 | 3_2:+65761339 | Msa0418100:CDS |
| TGGGGCCTCATCTTCTCCAT+TGG | 0.457851 | 3_2:-65760491 | None:intergenic |
| GGAGATCAAGATGCTACTAC+AGG | 0.459580 | 3_2:+65761279 | Msa0418100:CDS |
| GCAATGCTGCTCTCGCCACC+AGG | 0.462130 | 3_2:-65761507 | None:intergenic |
| GAACAAGAGAGAAAAGATAG+TGG | 0.472673 | 3_2:-65759222 | None:intergenic |
| AACAAGAGAGAAAAGATAGT+GGG | 0.474343 | 3_2:-65759221 | None:intergenic |
| GCAAAACTCCGAGAGATAAG+TGG | 0.475331 | 3_2:+65761420 | Msa0418100:CDS |
| AATCTTTCCCATGGTGGGAA+AGG | 0.477044 | 3_2:+65759049 | Msa0418100:five_prime_UTR |
| ATGAAGGAGATTACTGGTAG+TGG | 0.479857 | 3_2:+65760457 | Msa0418100:CDS |
| TGTGCTCCTCCTTAATCAAA+TGG | 0.488559 | 3_2:+65759019 | Msa0418100:five_prime_UTR |
| GCGGAGTCTAGAGACTATCT+AGG | 0.489892 | 3_2:+65761468 | Msa0418100:CDS |
| GCCACCTCAGGCAATGAAGC+AGG | 0.491990 | 3_2:-65760725 | None:intergenic |
| GTGGCGGAAGAAGGAGGAGC+TGG | 0.495714 | 3_2:-65759343 | None:intergenic |
| GGAGCTGGAGAATCATTGAT+TGG | 0.497326 | 3_2:-65759328 | None:intergenic |
| GAGACTATCTAGGCGGCGTA+CGG | 0.501215 | 3_2:+65761478 | Msa0418100:CDS |
| TTGAAAGGGAGCATAGGCCT+TGG | 0.501700 | 3_2:+65760902 | Msa0418100:CDS |
| AAAATAATCTTTCCCATGGT+GGG | 0.506722 | 3_2:+65759044 | Msa0418100:five_prime_UTR |
| CTCGCATACTGGAGTTGAAA+GGG | 0.507435 | 3_2:+65760888 | Msa0418100:CDS |
| TGGCGAGAGCAGCATTGCGC+TGG | 0.511766 | 3_2:+65761512 | Msa0418100:CDS |
| TGTTACCTTGATTAGGGTGA+TGG | 0.512492 | 3_2:+65761258 | Msa0418100:intron |
| CGAGGTTTGATTTCTGGTGG+TGG | 0.514488 | 3_2:-65760854 | None:intergenic |
| GGCGGCGTACGGAAGCCGCC+TGG | 0.516854 | 3_2:+65761489 | Msa0418100:CDS |
| TGAGAACGAGTGGCGGAAGA+AGG | 0.518411 | 3_2:-65759352 | None:intergenic |
| GGGAGTAACATCTTTGCTGA+TGG | 0.529787 | 3_2:+65761441 | Msa0418100:CDS |
| AAAATTGCAGCAAGCTATTG+CGG | 0.532841 | 3_2:+65760652 | Msa0418100:intron |
| GCAAAGTGCAAGGAGCTTAG+TGG | 0.534359 | 3_2:+65760815 | Msa0418100:CDS |
| ATCAGTAAGGTGGTGTTTGG+AGG | 0.535681 | 3_2:+65759515 | Msa0418100:CDS |
| GAAGATGAGGCCCCAGAGGA+TGG | 0.538465 | 3_2:+65760499 | Msa0418100:CDS |
| AACCGGAATTCGCATGTACC+AGG | 0.538686 | 3_2:+65760546 | Msa0418100:CDS |
| GAAGTGTGTGGTTTCCTCAC+CGG | 0.545734 | 3_2:-65759274 | None:intergenic |
| ATGAAAGCAAAGCAAACTAC+AGG | 0.547582 | 3_2:-65759098 | None:intergenic |
| GTGTTAATGGAAATAATCAA+TGG | 0.549038 | 3_2:-65761772 | None:intergenic |
| GCCTGCTTCATTGCCTGAGG+TGG | 0.550736 | 3_2:+65760724 | Msa0418100:CDS |
| CAAAATAATCTTTCCCATGG+TGG | 0.551294 | 3_2:+65759043 | Msa0418100:five_prime_UTR |
| ATGCGAGGAGTAATTGGCCG+AGG | 0.557491 | 3_2:-65760872 | None:intergenic |
| AGTGGAATATTTGTAGCCAA+TGG | 0.558445 | 3_2:+65760475 | Msa0418100:CDS |
| AGGTTGAAAGCTTAAACAAA+CGG | 0.565199 | 3_2:+65759555 | Msa0418100:CDS |
| GGTGAATCCTTTCCCACCAT+GGG | 0.567013 | 3_2:-65759056 | None:intergenic |
| GAGGAGCACAGATGTTATGA+TGG | 0.570153 | 3_2:-65759006 | None:intergenic |
| TGTTACTCCCACTTATCTCT+CGG | 0.571485 | 3_2:-65761428 | None:intergenic |
| ACAAGAGAGAAAAGATAGTG+GGG | 0.571498 | 3_2:-65759220 | None:intergenic |
| AACACTCTCTTCCTCGCCAA+AGG | 0.574213 | 3_2:-65760690 | None:intergenic |
| TTGTTCGGAGTATAAGATGA+AGG | 0.575022 | 3_2:+65760441 | Msa0418100:CDS |
| CCTCGCATACTGGAGTTGAA+AGG | 0.579755 | 3_2:+65760887 | Msa0418100:CDS |
| TTCATCTTATACTCCGAACA+AGG | 0.583995 | 3_2:-65760439 | None:intergenic |
| GGTCAAAATAATCTTTCCCA+TGG | 0.586218 | 3_2:+65759040 | Msa0418100:five_prime_UTR |
| GGAGTAACATCTTTGCTGAT+GGG | 0.589979 | 3_2:+65761442 | Msa0418100:CDS |
| AGGTCAGGTTACTGATGAAG+AGG | 0.590479 | 3_2:+65759535 | Msa0418100:CDS |
| TCCCAAAACCCAGAAATACA+AGG | 0.590755 | 3_2:-65761626 | None:intergenic |
| TAACATCTTTGCTGATGGGA+AGG | 0.591975 | 3_2:+65761446 | Msa0418100:CDS |
| GTTGGCACTGCCATCCTCTG+GGG | 0.593210 | 3_2:-65760509 | None:intergenic |
| GAACGAGTGGCGGAAGAAGG+AGG | 0.593909 | 3_2:-65759349 | None:intergenic |
| GATTTCTCAGCAGCCAAAGG+TGG | 0.597007 | 3_2:-65761387 | None:intergenic |
| CTGGAGTTGAAAGGGAGCAT+AGG | 0.598124 | 3_2:+65760896 | Msa0418100:CDS |
| CTGCTGAGAAATCATTGAGT+GGG | 0.598754 | 3_2:+65761397 | Msa0418100:CDS |
| AACAAACAACCAATTAGCAA+TGG | 0.599628 | 3_2:-65761693 | None:intergenic |
| GCTTTCTGATGCAAAGTGCA+AGG | 0.600086 | 3_2:+65760805 | Msa0418100:CDS |
| GGCCGAGGTTTGATTTCTGG+TGG | 0.601150 | 3_2:-65760857 | None:intergenic |
| ACTACAGGTGGAGTTTAACA+TGG | 0.606239 | 3_2:-65759083 | None:intergenic |
| AGGTGAATCCTTTCCCACCA+TGG | 0.607974 | 3_2:-65759057 | None:intergenic |
| CAAAACTCCGAGAGATAAGT+GGG | 0.610976 | 3_2:+65761421 | Msa0418100:CDS |
| ATGCTGCTCTCGCCACCAGG+CGG | 0.612447 | 3_2:-65761504 | None:intergenic |
| GAGATCAAGATGCTACTACA+GGG | 0.614754 | 3_2:+65761280 | Msa0418100:CDS |
| CATCTTTGCTGATGGGAAGG+CGG | 0.619726 | 3_2:+65761449 | Msa0418100:CDS |
| AAAGCAAAGCAAACTACAGG+TGG | 0.620518 | 3_2:-65759095 | None:intergenic |
| TGCATACATGACTTTCTCCA+AGG | 0.621174 | 3_2:-65760919 | None:intergenic |
| TGTAGCCAATGGAGAAGATG+AGG | 0.623609 | 3_2:+65760486 | Msa0418100:CDS |
| GGTGGAGTTTAACATGGGAA+AGG | 0.626329 | 3_2:-65759077 | None:intergenic |
| GCCGTCGGATGGGATCAGTA+AGG | 0.631418 | 3_2:+65759502 | Msa0418100:intron |
| AATGATTTCTCAGCAGCCAA+AGG | 0.633502 | 3_2:-65761390 | None:intergenic |
| GCCAAGCAGCGTGAGCTCAG+TGG | 0.638579 | 3_2:+65760746 | Msa0418100:CDS |
| CCTTTCAACTCCAGTATGCG+AGG | 0.640438 | 3_2:-65760887 | None:intergenic |
| CACCACCAGAAATCAAACCT+CGG | 0.641332 | 3_2:+65760855 | Msa0418100:CDS |
| AAAGCCTGCTTCATTGCCTG+AGG | 0.644684 | 3_2:+65760721 | Msa0418100:CDS |
| GGCGTACGGAAGCCGCCTGG+TGG | 0.647825 | 3_2:+65761492 | Msa0418100:CDS |
| CAGTCATATCTCCTTTGGCG+AGG | 0.651432 | 3_2:+65760679 | Msa0418100:CDS |
| TACCTGATGAGAACGAGTGG+CGG | 0.652182 | 3_2:-65759359 | None:intergenic |
| GTCGGATGGGATCAGTAAGG+TGG | 0.653944 | 3_2:+65759505 | Msa0418100:CDS |
| GCTGCTGAGAAATCATTGAG+TGG | 0.655595 | 3_2:+65761396 | Msa0418100:CDS |
| TGGAGAAGATGAGGCCCCAG+AGG | 0.662591 | 3_2:+65760495 | Msa0418100:CDS |
| ACCTTACTGATCCCATCCGA+CGG | 0.677868 | 3_2:-65759503 | None:intergenic |
| CTACAGGTGGAGTTTAACAT+GGG | 0.682874 | 3_2:-65759082 | None:intergenic |
| TTTGGCGTGTGAATATGGAG+AGG | 0.686240 | 3_2:+65759245 | Msa0418100:CDS |
| AGATCTGCAGTTGAAGTGTG+TGG | 0.688104 | 3_2:-65759286 | None:intergenic |
| ACTTACCTGATGAGAACGAG+TGG | 0.690550 | 3_2:-65759362 | None:intergenic |
| AGATCAAGATGCTACTACAG+GGG | 0.694326 | 3_2:+65761281 | Msa0418100:CDS |
| TGCTGAGAAATCATTGAGTG+GGG | 0.706728 | 3_2:+65761398 | Msa0418100:CDS |
| TGGAGAGGAACACACCGGTG+AGG | 0.711487 | 3_2:+65759260 | Msa0418100:CDS |
| GAATATGGAGAGGAACACAC+CGG | 0.761577 | 3_2:+65759255 | Msa0418100:CDS |
| GAGTCTAGAGACTATCTAGG+CGG | 0.855715 | 3_2:+65761471 | Msa0418100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATGATTTTATTTTTGTT+TGG | + | chr3_2:65759461-65759480 | Msa0418100:intron | 15.0% |
| !! | ATTTGAATTAGCTAAAAATA+AGG | - | chr3_2:65759600-65759619 | None:intergenic | 15.0% |
| !!! | TGGTTTTAATTAATTTTTAG+TGG | + | chr3_2:65761579-65761598 | Msa0418100:three_prime_UTR | 15.0% |
| !!! | GGTTTTAATTAATTTTTAGT+GGG | + | chr3_2:65761580-65761599 | Msa0418100:three_prime_UTR | 15.0% |
| !!! | GTTTTAATTAATTTTTAGTG+GGG | + | chr3_2:65761581-65761600 | Msa0418100:three_prime_UTR | 15.0% |
| !!! | TTATTTTGACCATTTGATTA+AGG | - | chr3_2:65759031-65759050 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGTTTGGTTGAT+TGG | + | chr3_2:65759469-65759488 | Msa0418100:intron | 20.0% |
| !! | ATAAAAATAAATACCTGTCA+CGG | + | chr3_2:65759662-65759681 | Msa0418100:intron | 20.0% |
| !!! | TCTGTTATTTACTATCTAAT+AGG | + | chr3_2:65759834-65759853 | Msa0418100:intron | 20.0% |
| !! | TTATTTACTATCTAATAGGA+AGG | + | chr3_2:65759838-65759857 | Msa0418100:intron | 20.0% |
| !! | TAAAAGCTTAAATATGTGTT+TGG | + | chr3_2:65760292-65760311 | Msa0418100:intron | 20.0% |
| !!! | CTCAATTTTTGTATCATTTA+TGG | + | chr3_2:65760322-65760341 | Msa0418100:intron | 20.0% |
| !!! | GATCCAAATTTTAAAATTGA+GGG | - | chr3_2:65761007-65761026 | None:intergenic | 20.0% |
| !!! | TGATCCAAATTTTAAAATTG+AGG | - | chr3_2:65761008-65761027 | None:intergenic | 20.0% |
| !!! | TTTTAAAGAGTTTAGTTGAG+TGG | - | chr3_2:65759194-65759213 | None:intergenic | 25.0% |
| !!! | ATCTAATAGGAAGGTATTAT+AGG | + | chr3_2:65759847-65759866 | Msa0418100:intron | 25.0% |
| ! | AGCTATTAGTATCACATATA+GGG | + | chr3_2:65760090-65760109 | Msa0418100:intron | 25.0% |
| !! | GTATAGTTTTTCCTAAATTG+CGG | + | chr3_2:65760118-65760137 | Msa0418100:intron | 25.0% |
| ! | AACACCAAAACAAATTCATA+AGG | - | chr3_2:65760405-65760424 | None:intergenic | 25.0% |
| !!! | AGACTATCATATTTTTGCAA+TGG | + | chr3_2:65760593-65760612 | Msa0418100:intron | 25.0% |
| !!! | TCACCCTCAATTTTAAAATT+TGG | + | chr3_2:65761001-65761020 | Msa0418100:intron | 25.0% |
| !! | GTTCATATAGTACTTTGTTT+AGG | + | chr3_2:65761059-65761078 | Msa0418100:intron | 25.0% |
| !! | ATAACTATAGCTTTTCGTTT+CGG | - | chr3_2:65761111-65761130 | None:intergenic | 25.0% |
| ! | TCAGGAAACAACATATTTAA+AGG | + | chr3_2:65761357-65761376 | Msa0418100:CDS | 25.0% |
| !!! | TTCATATACTGTCTTTGTTT+TGG | + | chr3_2:65761559-65761578 | Msa0418100:three_prime_UTR | 25.0% |
| ! | ATTATTTGACCTTGTATTTC+TGG | + | chr3_2:65761617-65761636 | Msa0418100:three_prime_UTR | 25.0% |
| ! | TTATTTGACCTTGTATTTCT+GGG | + | chr3_2:65761618-65761637 | Msa0418100:three_prime_UTR | 25.0% |
| ! | TATTAATCAAGGAACCTAAA+AGG | - | chr3_2:65761657-65761676 | None:intergenic | 25.0% |
| ! | TTTGGTCAAGATATTAATCA+AGG | - | chr3_2:65761668-65761687 | None:intergenic | 25.0% |
| ! | GATTAATATCTTGACCAAAA+AGG | + | chr3_2:65761669-65761688 | Msa0418100:three_prime_UTR | 25.0% |
| !! | TCATAATCATGTGTTTTCTT+CGG | + | chr3_2:65761715-65761734 | Msa0418100:three_prime_UTR | 25.0% |
| ! | TTTTGACCATTTGATTAAGG+AGG | - | chr3_2:65759028-65759047 | None:intergenic | 30.0% |
| AAAATAATCTTTCCCATGGT+GGG | + | chr3_2:65759044-65759063 | Msa0418100:five_prime_UTR | 30.0% | |
| AACAAGAGAGAAAAGATAGT+GGG | - | chr3_2:65759224-65759243 | None:intergenic | 30.0% | |
| ! | ATCTTTTCTCTCTTGTTCTT+TGG | + | chr3_2:65759227-65759246 | Msa0418100:CDS | 30.0% |
| AATAACAACGAAATGTTACG+TGG | - | chr3_2:65759409-65759428 | None:intergenic | 30.0% | |
| ACGTAACATTTCGTTGTTAT+TGG | + | chr3_2:65759408-65759427 | Msa0418100:intron | 30.0% | |
| AGGTTGAAAGCTTAAACAAA+CGG | + | chr3_2:65759555-65759574 | Msa0418100:CDS | 30.0% | |
| !!! | TTTTTTTGTTCCGTTGTTTC+AGG | + | chr3_2:65759693-65759712 | Msa0418100:intron | 30.0% |
| ACAAACAAAACCTGAAACAA+CGG | - | chr3_2:65759706-65759725 | None:intergenic | 30.0% | |
| !! | GAAGGTATTATAGGTGAAAA+GGG | + | chr3_2:65759856-65759875 | Msa0418100:intron | 30.0% |
| TATAGGTGAAAAGGGTTAAA+TGG | + | chr3_2:65759864-65759883 | Msa0418100:intron | 30.0% | |
| AGTTGTTGAATTTCAATGAG+TGG | + | chr3_2:65759897-65759916 | Msa0418100:intron | 30.0% | |
| AATTTCAATGAGTGGATCTA+TGG | + | chr3_2:65759905-65759924 | Msa0418100:intron | 30.0% | |
| GCTACTCTAAATGGTAAAAA+TGG | - | chr3_2:65759973-65759992 | None:intergenic | 30.0% | |
| GAAATCACATTTGCAACATT+GGG | + | chr3_2:65759993-65760012 | Msa0418100:intron | 30.0% | |
| TGATACTAATAGCTCAATGT+GGG | - | chr3_2:65760084-65760103 | None:intergenic | 30.0% | |
| GAGCTATTAGTATCACATAT+AGG | + | chr3_2:65760089-65760108 | Msa0418100:intron | 30.0% | |
| GACTATACGATATTGTGATT+TGG | + | chr3_2:65760149-65760168 | Msa0418100:intron | 30.0% | |
| ! | TGATTTTTGCCTAAATTGTC+CGG | + | chr3_2:65760188-65760207 | Msa0418100:intron | 30.0% |
| ! | CTAAAAGGCAAAAGTATGTT+TGG | - | chr3_2:65760249-65760268 | None:intergenic | 30.0% |
| ! | AAGCTTTTAATAAAGCAGCA+GGG | - | chr3_2:65760281-65760300 | None:intergenic | 30.0% |
| ! | TAAGCTTTTAATAAAGCAGC+AGG | - | chr3_2:65760282-65760301 | None:intergenic | 30.0% |
| ! | ATGGACTGAACTTATAATCT+TGG | + | chr3_2:65760341-65760360 | Msa0418100:intron | 30.0% |
| CTGAACTTATAATCTTGGAA+CGG | + | chr3_2:65760346-65760365 | Msa0418100:intron | 30.0% | |
| !! | TGTGCCTTATGAATTTGTTT+TGG | + | chr3_2:65760398-65760417 | Msa0418100:intron | 30.0% |
| !! | AATTTCTAGAAAGCCTTGTT+CGG | + | chr3_2:65760426-65760445 | Msa0418100:intron | 30.0% |
| TATAAGATGAAGGAGATTAC+TGG | + | chr3_2:65760451-65760470 | Msa0418100:CDS | 30.0% | |
| TACAATAAACGCAATATACC+TGG | - | chr3_2:65760567-65760586 | None:intergenic | 30.0% | |
| ! | TTGCTAACCTGAATTGTTTT+GGG | + | chr3_2:65760952-65760971 | Msa0418100:intron | 30.0% |
| ATAATCACCCAAAACAATTC+AGG | - | chr3_2:65760962-65760981 | None:intergenic | 30.0% | |
| AAGCTATAGTTATTGCATCA+TGG | + | chr3_2:65761118-65761137 | Msa0418100:intron | 30.0% | |
| ! | TGTTGTTGTTACCTTGATTA+GGG | + | chr3_2:65761252-65761271 | Msa0418100:intron | 30.0% |
| AACAAACAACCAATTAGCAA+TGG | - | chr3_2:65761696-65761715 | None:intergenic | 30.0% | |
| GGTCAAAATAATCTTTCCCA+TGG | + | chr3_2:65759040-65759059 | Msa0418100:five_prime_UTR | 35.0% | |
| CAAAATAATCTTTCCCATGG+TGG | + | chr3_2:65759043-65759062 | Msa0418100:five_prime_UTR | 35.0% | |
| ATGAAAGCAAAGCAAACTAC+AGG | - | chr3_2:65759101-65759120 | None:intergenic | 35.0% | |
| ACAAGAGAGAAAAGATAGTG+GGG | - | chr3_2:65759223-65759242 | None:intergenic | 35.0% | |
| GAACAAGAGAGAAAAGATAG+TGG | - | chr3_2:65759225-65759244 | None:intergenic | 35.0% | |
| CATAAGCAATTGAACTCAAG+CGG | - | chr3_2:65759447-65759466 | None:intergenic | 35.0% | |
| !! | GGAAGGTATTATAGGTGAAA+AGG | + | chr3_2:65759855-65759874 | Msa0418100:intron | 35.0% |
| TGTGATTTCGCTACTCTAAA+TGG | - | chr3_2:65759982-65760001 | None:intergenic | 35.0% | |
| CGAAATCACATTTGCAACAT+TGG | + | chr3_2:65759992-65760011 | Msa0418100:intron | 35.0% | |
| GTGATACTAATAGCTCAATG+TGG | - | chr3_2:65760085-65760104 | None:intergenic | 35.0% | |
| ! | CAAAAGTATGTTTGGATTCG+TGG | - | chr3_2:65760241-65760260 | None:intergenic | 35.0% |
| TTCATCTTATACTCCGAACA+AGG | - | chr3_2:65760442-65760461 | None:intergenic | 35.0% | |
| TTGTTCGGAGTATAAGATGA+AGG | + | chr3_2:65760441-65760460 | Msa0418100:CDS | 35.0% | |
| AGTGGAATATTTGTAGCCAA+TGG | + | chr3_2:65760475-65760494 | Msa0418100:CDS | 35.0% | |
| AACCCTTCTGCAAATAAAAC+CGG | + | chr3_2:65760529-65760548 | Msa0418100:CDS | 35.0% | |
| !!! | TTCCGGTTTTATTTGCAGAA+GGG | - | chr3_2:65760534-65760553 | None:intergenic | 35.0% |
| !!! | ATTCCGGTTTTATTTGCAGA+AGG | - | chr3_2:65760535-65760554 | None:intergenic | 35.0% |
| AAAATTGCAGCAAGCTATTG+CGG | + | chr3_2:65760652-65760671 | Msa0418100:intron | 35.0% | |
| ! | TTCAGGTTAGCAACTTATAG+TGG | - | chr3_2:65760945-65760964 | None:intergenic | 35.0% |
| ! | GTTGCTAACCTGAATTGTTT+TGG | + | chr3_2:65760951-65760970 | Msa0418100:intron | 35.0% |
| GGTAACAACAACACAATCAA+TGG | - | chr3_2:65761245-65761264 | None:intergenic | 35.0% | |
| ! | GTGTTGTTGTTACCTTGATT+AGG | + | chr3_2:65761251-65761270 | Msa0418100:intron | 35.0% |
| !!! | TTCTTTGCTGTTTTCAGAAC+TGG | - | chr3_2:65761309-65761328 | None:intergenic | 35.0% |
| !! | TTGCGCTGGTATAATTTGTT+AGG | + | chr3_2:65761526-65761545 | Msa0418100:exon | 35.0% |
| !!! | ACCTTGTATTTCTGGGTTTT+GGG | + | chr3_2:65761625-65761644 | Msa0418100:three_prime_UTR | 35.0% |
| !!! | GTTTTGGGAATTTGCCTTTT+AGG | + | chr3_2:65761640-65761659 | Msa0418100:three_prime_UTR | 35.0% |
| ! | CAATTAGCAATGGTCCTTTT+TGG | - | chr3_2:65761686-65761705 | None:intergenic | 35.0% |
| CAAAAAGGACCATTGCTAAT+TGG | + | chr3_2:65761684-65761703 | Msa0418100:three_prime_UTR | 35.0% | |
| GCTTGCTTAATGAAGTGATT+TGG | + | chr3_2:65761739-65761758 | Msa0418100:three_prime_UTR | 35.0% | |
| TGTGCTCCTCCTTAATCAAA+TGG | + | chr3_2:65759019-65759038 | Msa0418100:five_prime_UTR | 40.0% | |
| CTACAGGTGGAGTTTAACAT+GGG | - | chr3_2:65759085-65759104 | None:intergenic | 40.0% | |
| ACTACAGGTGGAGTTTAACA+TGG | - | chr3_2:65759086-65759105 | None:intergenic | 40.0% | |
| AAAGCAAAGCAAACTACAGG+TGG | - | chr3_2:65759098-65759117 | None:intergenic | 40.0% | |
| TGTTCTTTGGCGTGTGAATA+TGG | + | chr3_2:65759240-65759259 | Msa0418100:CDS | 40.0% | |
| CAACTGCAGATCTACTTGTT+TGG | + | chr3_2:65759296-65759315 | Msa0418100:CDS | 40.0% | |
| ! | ATTGGTGAATTTTCAGCCGT+CGG | + | chr3_2:65759487-65759506 | Msa0418100:intron | 40.0% |
| TCACATTTGCAACATTGGGT+TGG | + | chr3_2:65759997-65760016 | Msa0418100:intron | 40.0% | |
| ACAGAAACAAAACGTGCTAC+CGG | - | chr3_2:65760210-65760229 | None:intergenic | 40.0% | |
| GCAGGGCAGATTAAACTAAA+AGG | - | chr3_2:65760264-65760283 | None:intergenic | 40.0% | |
| ! | AATCTTGGAACGGTTTTGCT+TGG | + | chr3_2:65760356-65760375 | Msa0418100:intron | 40.0% |
| ATGAAGGAGATTACTGGTAG+TGG | + | chr3_2:65760457-65760476 | Msa0418100:CDS | 40.0% | |
| !!! | GGTTTTATTTGCAGAAGGGT+TGG | - | chr3_2:65760530-65760549 | None:intergenic | 40.0% |
| AAATTGCAGCAAGCTATTGC+GGG | + | chr3_2:65760653-65760672 | Msa0418100:intron | 40.0% | |
| GGAATCAGTCATATCTCCTT+TGG | + | chr3_2:65760674-65760693 | Msa0418100:CDS | 40.0% | |
| TGCATACATGACTTTCTCCA+AGG | - | chr3_2:65760922-65760941 | None:intergenic | 40.0% | |
| TGTTACCTTGATTAGGGTGA+TGG | + | chr3_2:65761258-65761277 | Msa0418100:intron | 40.0% | |
| GAGATCAAGATGCTACTACA+GGG | + | chr3_2:65761280-65761299 | Msa0418100:CDS | 40.0% | |
| AGATCAAGATGCTACTACAG+GGG | + | chr3_2:65761281-65761300 | Msa0418100:CDS | 40.0% | |
| CTGACAGTTCTGCAAATTTC+TGG | - | chr3_2:65761341-65761360 | None:intergenic | 40.0% | |
| CAGAAATTTGCAGAACTGTC+AGG | + | chr3_2:65761339-65761358 | Msa0418100:CDS | 40.0% | |
| AATGATTTCTCAGCAGCCAA+AGG | - | chr3_2:65761393-65761412 | None:intergenic | 40.0% | |
| CTGCTGAGAAATCATTGAGT+GGG | + | chr3_2:65761397-65761416 | Msa0418100:CDS | 40.0% | |
| TGCTGAGAAATCATTGAGTG+GGG | + | chr3_2:65761398-65761417 | Msa0418100:CDS | 40.0% | |
| CAAAACTCCGAGAGATAAGT+GGG | + | chr3_2:65761421-65761440 | Msa0418100:CDS | 40.0% | |
| TGTTACTCCCACTTATCTCT+CGG | - | chr3_2:65761431-65761450 | None:intergenic | 40.0% | |
| GGAGTAACATCTTTGCTGAT+GGG | + | chr3_2:65761442-65761461 | Msa0418100:CDS | 40.0% | |
| TAACATCTTTGCTGATGGGA+AGG | + | chr3_2:65761446-65761465 | Msa0418100:CDS | 40.0% | |
| !!! | GACCTTGTATTTCTGGGTTT+TGG | + | chr3_2:65761624-65761643 | Msa0418100:three_prime_UTR | 40.0% |
| TCCCAAAACCCAGAAATACA+AGG | - | chr3_2:65761629-65761648 | None:intergenic | 40.0% | |
| ! | GAGGAGCACAGATGTTATGA+TGG | - | chr3_2:65759009-65759028 | None:intergenic | 45.0% |
| ! | AATCTTTCCCATGGTGGGAA+AGG | + | chr3_2:65759049-65759068 | Msa0418100:five_prime_UTR | 45.0% |
| GGTGGAGTTTAACATGGGAA+AGG | - | chr3_2:65759080-65759099 | None:intergenic | 45.0% | |
| TTTGGCGTGTGAATATGGAG+AGG | + | chr3_2:65759245-65759264 | Msa0418100:CDS | 45.0% | |
| GAATATGGAGAGGAACACAC+CGG | + | chr3_2:65759255-65759274 | Msa0418100:CDS | 45.0% | |
| AGATCTGCAGTTGAAGTGTG+TGG | - | chr3_2:65759289-65759308 | None:intergenic | 45.0% | |
| GGAGCTGGAGAATCATTGAT+TGG | - | chr3_2:65759331-65759350 | None:intergenic | 45.0% | |
| ACTTACCTGATGAGAACGAG+TGG | - | chr3_2:65759365-65759384 | None:intergenic | 45.0% | |
| ! | TGAATTTTCAGCCGTCGGAT+GGG | + | chr3_2:65759492-65759511 | Msa0418100:intron | 45.0% |
| ATCAGTAAGGTGGTGTTTGG+AGG | + | chr3_2:65759515-65759534 | Msa0418100:CDS | 45.0% | |
| AGGTCAGGTTACTGATGAAG+AGG | + | chr3_2:65759535-65759554 | Msa0418100:CDS | 45.0% | |
| AAAAACACACAGACCGTGAC+AGG | - | chr3_2:65759678-65759697 | None:intergenic | 45.0% | |
| GTCTTGTGCTACCGCAATTT+AGG | - | chr3_2:65760132-65760151 | None:intergenic | 45.0% | |
| AACGTGCTACCGGACAATTT+AGG | - | chr3_2:65760200-65760219 | None:intergenic | 45.0% | |
| TGTAGCCAATGGAGAAGATG+AGG | + | chr3_2:65760486-65760505 | Msa0418100:CDS | 45.0% | |
| TACCTGGTACATGCGAATTC+CGG | - | chr3_2:65760551-65760570 | None:intergenic | 45.0% | |
| !!! | GGCAATGAAGCAGGCTTTTT+TGG | - | chr3_2:65760719-65760738 | None:intergenic | 45.0% |
| GCTTTCTGATGCAAAGTGCA+AGG | + | chr3_2:65760805-65760824 | Msa0418100:CDS | 45.0% | |
| CACCACCAGAAATCAAACCT+CGG | + | chr3_2:65760855-65760874 | Msa0418100:CDS | 45.0% | |
| ! | ATTGGCCGAGGTTTGATTTC+TGG | - | chr3_2:65760863-65760882 | None:intergenic | 45.0% |
| TCCAGTATGCGAGGAGTAAT+TGG | - | chr3_2:65760881-65760900 | None:intergenic | 45.0% | |
| CTCGCATACTGGAGTTGAAA+GGG | + | chr3_2:65760888-65760907 | Msa0418100:CDS | 45.0% | |
| GATCTCCATCACCCTAATCA+AGG | - | chr3_2:65761266-65761285 | None:intergenic | 45.0% | |
| GGAGATCAAGATGCTACTAC+AGG | + | chr3_2:65761279-65761298 | Msa0418100:CDS | 45.0% | |
| GCTGCTGAGAAATCATTGAG+TGG | + | chr3_2:65761396-65761415 | Msa0418100:CDS | 45.0% | |
| GCAAAACTCCGAGAGATAAG+TGG | + | chr3_2:65761420-65761439 | Msa0418100:CDS | 45.0% | |
| GGGAGTAACATCTTTGCTGA+TGG | + | chr3_2:65761441-65761460 | Msa0418100:CDS | 45.0% | |
| GAGTCTAGAGACTATCTAGG+CGG | + | chr3_2:65761471-65761490 | Msa0418100:CDS | 45.0% | |
| GGTGAATCCTTTCCCACCAT+GGG | - | chr3_2:65759059-65759078 | None:intergenic | 50.0% | |
| AGGTGAATCCTTTCCCACCA+TGG | - | chr3_2:65759060-65759079 | None:intergenic | 50.0% | |
| GAAGTGTGTGGTTTCCTCAC+CGG | - | chr3_2:65759277-65759296 | None:intergenic | 50.0% | |
| TACCTGATGAGAACGAGTGG+CGG | - | chr3_2:65759362-65759381 | None:intergenic | 50.0% | |
| ! | GTGAATTTTCAGCCGTCGGA+TGG | + | chr3_2:65759491-65759510 | Msa0418100:intron | 50.0% |
| ACCTTACTGATCCCATCCGA+CGG | - | chr3_2:65759506-65759525 | None:intergenic | 50.0% | |
| GGGATCAGTAAGGTGGTGTT+TGG | + | chr3_2:65759512-65759531 | Msa0418100:CDS | 50.0% | |
| TAAGGTGGTGTTTGGAGGTC+AGG | + | chr3_2:65759520-65759539 | Msa0418100:CDS | 50.0% | |
| AACCGGAATTCGCATGTACC+AGG | + | chr3_2:65760546-65760565 | Msa0418100:CDS | 50.0% | |
| CAGTCATATCTCCTTTGGCG+AGG | + | chr3_2:65760679-65760698 | Msa0418100:CDS | 50.0% | |
| AACACTCTCTTCCTCGCCAA+AGG | - | chr3_2:65760693-65760712 | None:intergenic | 50.0% | |
| AAAGCCTGCTTCATTGCCTG+AGG | + | chr3_2:65760721-65760740 | Msa0418100:CDS | 50.0% | |
| GCAAAGTGCAAGGAGCTTAG+TGG | + | chr3_2:65760815-65760834 | Msa0418100:CDS | 50.0% | |
| !! | CGAGGTTTGATTTCTGGTGG+TGG | - | chr3_2:65760857-65760876 | None:intergenic | 50.0% |
| GCCAATTACTCCTCGCATAC+TGG | + | chr3_2:65760877-65760896 | Msa0418100:CDS | 50.0% | |
| CCTTTCAACTCCAGTATGCG+AGG | - | chr3_2:65760890-65760909 | None:intergenic | 50.0% | |
| CCTCGCATACTGGAGTTGAA+AGG | + | chr3_2:65760887-65760906 | Msa0418100:CDS | 50.0% | |
| ! | CTGGAGTTGAAAGGGAGCAT+AGG | + | chr3_2:65760896-65760915 | Msa0418100:CDS | 50.0% |
| ! | TTGAAAGGGAGCATAGGCCT+TGG | + | chr3_2:65760902-65760921 | Msa0418100:CDS | 50.0% |
| TAAAGGCGACTCTCCACCTT+TGG | + | chr3_2:65761374-65761393 | Msa0418100:CDS | 50.0% | |
| GATTTCTCAGCAGCCAAAGG+TGG | - | chr3_2:65761390-65761409 | None:intergenic | 50.0% | |
| CATCTTTGCTGATGGGAAGG+CGG | + | chr3_2:65761449-65761468 | Msa0418100:CDS | 50.0% | |
| GCGGAGTCTAGAGACTATCT+AGG | + | chr3_2:65761468-65761487 | Msa0418100:CDS | 50.0% | |
| ! | TGAGAACGAGTGGCGGAAGA+AGG | - | chr3_2:65759355-65759374 | None:intergenic | 55.0% |
| TTCCGCCACTCGTTCTCATC+AGG | + | chr3_2:65759357-65759376 | Msa0418100:CDS | 55.0% | |
| GTCGGATGGGATCAGTAAGG+TGG | + | chr3_2:65759505-65759524 | Msa0418100:CDS | 55.0% | |
| TGGGGCCTCATCTTCTCCAT+TGG | - | chr3_2:65760494-65760513 | None:intergenic | 55.0% | |
| ! | GGCCGAGGTTTGATTTCTGG+TGG | - | chr3_2:65760860-65760879 | None:intergenic | 55.0% |
| ATGCGAGGAGTAATTGGCCG+AGG | - | chr3_2:65760875-65760894 | None:intergenic | 55.0% | |
| GAGACTATCTAGGCGGCGTA+CGG | + | chr3_2:65761478-65761497 | Msa0418100:CDS | 55.0% | |
| TGGAGAGGAACACACCGGTG+AGG | + | chr3_2:65759260-65759279 | Msa0418100:CDS | 60.0% | |
| ! | GAACGAGTGGCGGAAGAAGG+AGG | - | chr3_2:65759352-65759371 | None:intergenic | 60.0% |
| GCCGTCGGATGGGATCAGTA+AGG | + | chr3_2:65759502-65759521 | Msa0418100:intron | 60.0% | |
| TGGAGAAGATGAGGCCCCAG+AGG | + | chr3_2:65760495-65760514 | Msa0418100:CDS | 60.0% | |
| GAAGATGAGGCCCCAGAGGA+TGG | + | chr3_2:65760499-65760518 | Msa0418100:CDS | 60.0% | |
| GTTGGCACTGCCATCCTCTG+GGG | - | chr3_2:65760512-65760531 | None:intergenic | 60.0% | |
| GGTTGGCACTGCCATCCTCT+GGG | - | chr3_2:65760513-65760532 | None:intergenic | 60.0% | |
| GCCTGCTTCATTGCCTGAGG+TGG | + | chr3_2:65760724-65760743 | Msa0418100:CDS | 60.0% | |
| GCCACCTCAGGCAATGAAGC+AGG | - | chr3_2:65760728-65760747 | None:intergenic | 60.0% | |
| TCCACTGAGCTCACGCTGCT+TGG | - | chr3_2:65760750-65760769 | None:intergenic | 60.0% | |
| ! | GTGGCGGAAGAAGGAGGAGC+TGG | - | chr3_2:65759346-65759365 | None:intergenic | 65.0% |
| ! | GGGTTGGCACTGCCATCCTC+TGG | - | chr3_2:65760514-65760533 | None:intergenic | 65.0% |
| TCACGCTGCTTGGCCACCTC+AGG | - | chr3_2:65760740-65760759 | None:intergenic | 65.0% | |
| GCCAAGCAGCGTGAGCTCAG+TGG | + | chr3_2:65760746-65760765 | Msa0418100:CDS | 65.0% | |
| ATGCTGCTCTCGCCACCAGG+CGG | - | chr3_2:65761507-65761526 | None:intergenic | 65.0% | |
| GCAATGCTGCTCTCGCCACC+AGG | - | chr3_2:65761510-65761529 | None:intergenic | 65.0% | |
| TGGCGAGAGCAGCATTGCGC+TGG | + | chr3_2:65761512-65761531 | Msa0418100:CDS | 65.0% | |
| GGCGTACGGAAGCCGCCTGG+TGG | + | chr3_2:65761492-65761511 | Msa0418100:CDS | 75.0% | |
| ! | GGCGGCGTACGGAAGCCGCC+TGG | + | chr3_2:65761489-65761508 | Msa0418100:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 65758999 | 65761793 | 65758999 | ID=Msa0418100;Name=Msa0418100 |
| chr3_2 | mRNA | 65758999 | 65761793 | 65758999 | ID=Msa0418100-mRNA-1;Parent=Msa0418100;Name=Msa0418100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=86|1|1|1|1|1|5|254|346 |
| chr3_2 | exon | 65758999 | 65759378 | 65758999 | ID=Msa0418100-mRNA-1:exon:14832;Parent=Msa0418100-mRNA-1 |
| chr3_2 | exon | 65759503 | 65759576 | 65759503 | ID=Msa0418100-mRNA-1:exon:14833;Parent=Msa0418100-mRNA-1 |
| chr3_2 | exon | 65760435 | 65760567 | 65760435 | ID=Msa0418100-mRNA-1:exon:14834;Parent=Msa0418100-mRNA-1 |
| chr3_2 | exon | 65760662 | 65760934 | 65760662 | ID=Msa0418100-mRNA-1:exon:14835;Parent=Msa0418100-mRNA-1 |
| chr3_2 | exon | 65761273 | 65761793 | 65761273 | ID=Msa0418100-mRNA-1:exon:14836;Parent=Msa0418100-mRNA-1 |
| chr3_2 | five_prime_UTR | 65758999 | 65759084 | 65758999 | ID=Msa0418100-mRNA-1:five_prime_utr;Parent=Msa0418100-mRNA-1 |
| chr3_2 | CDS | 65759085 | 65759378 | 65759085 | ID=Msa0418100-mRNA-1:cds;Parent=Msa0418100-mRNA-1 |
| chr3_2 | CDS | 65759503 | 65759576 | 65759503 | ID=Msa0418100-mRNA-1:cds;Parent=Msa0418100-mRNA-1 |
| chr3_2 | CDS | 65760435 | 65760567 | 65760435 | ID=Msa0418100-mRNA-1:cds;Parent=Msa0418100-mRNA-1 |
| chr3_2 | CDS | 65760662 | 65760934 | 65760662 | ID=Msa0418100-mRNA-1:cds;Parent=Msa0418100-mRNA-1 |
| chr3_2 | CDS | 65761273 | 65761539 | 65761273 | ID=Msa0418100-mRNA-1:cds;Parent=Msa0418100-mRNA-1 |
| chr3_2 | three_prime_UTR | 65761540 | 65761793 | 65761540 | ID=Msa0418100-mRNA-1:three_prime_utr;Parent=Msa0418100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
