AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720130 MtrunA17_Chr5g0410791 97.465 355 9 0 1 355 1 355 0.0 678
Msa0720130 MtrunA17_Chr2g0289301 45.833 264 131 3 92 354 63 315 1.33e-67 215
Msa0720130 MtrunA17_Chr2g0289291 42.491 273 141 3 83 354 57 314 2.35e-60 196
Msa0720130 MtrunA17_Chr1g0202631 38.514 148 66 3 91 237 18 141 2.10e-20 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720130 AT2G35490.1 61.783 314 92 6 52 355 80 375 1.56e-119 350
Msa0720130 AT4G04020.1 46.415 265 134 3 92 355 60 317 3.10e-78 243
Msa0720130 AT4G22240.1 47.809 251 127 3 107 355 61 309 4.54e-78 242

Find 145 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATATACCTTTCACATTT+TGG 0.069136 5_1:-16075423 None:intergenic
CGGAGCTTCTTAATGGAAAT+TGG 0.135518 5_1:+16071912 Msa0720130:CDS
GCTCTTGTTGATACGGTTTA+TGG 0.164801 5_1:+16071785 Msa0720130:CDS
TCAAGCTGTTGTGTATTTAA+AGG 0.171848 5_1:+16075468 Msa0720130:three_prime_UTR
TCTTTATCCTCCAAGGTTTC+AGG 0.177149 5_1:+16071611 Msa0720130:CDS
TTATTTCACCTAAGCTAATA+AGG 0.205848 5_1:-16075588 None:intergenic
GAAGAGAGAGAAGAAGGTTT+AGG 0.227490 5_1:-16071431 None:intergenic
AATAATAATATATATTGATT+TGG 0.232043 5_1:+16075606 Msa0720130:three_prime_UTR
GAGGCCCCAGGCTAAGATTT+TGG 0.241414 5_1:-16075102 None:intergenic
AAGAGAGAGAAGAAGGTTTA+GGG 0.248806 5_1:-16071430 None:intergenic
GAAAGTGAATCACCCAAATT+TGG 0.258440 5_1:-16071297 None:intergenic
AGTATATCACGTGTCATTTC+AGG 0.278085 5_1:+16075163 Msa0720130:CDS
AGAAATGAAATGTGTATTAA+AGG 0.289832 5_1:-16071328 None:intergenic
GAGGAACCGGAGCTTCTTAA+TGG 0.292365 5_1:+16071905 Msa0720130:CDS
ATAATAATATATATTGATTT+GGG 0.311097 5_1:+16075607 Msa0720130:three_prime_UTR
GATAAAGATGGTTTGGCTTC+GGG 0.315337 5_1:-16071596 None:intergenic
ACTGAGCTTGGGTTTCGAGC+TGG 0.339922 5_1:+16071809 Msa0720130:CDS
CTGAGCTTGGGTTTCGAGCT+GGG 0.348135 5_1:+16071810 Msa0720130:CDS
CTCTTGTTGATACGGTTTAT+GGG 0.348147 5_1:+16071786 Msa0720130:CDS
TTTGGGTGGGCAGAGGGAAA+TGG 0.360329 5_1:-16075405 None:intergenic
GAGAATACCTGTATTCTTGC+AGG 0.368434 5_1:-16072994 None:intergenic
TATTTCACCTAAGCTAATAA+GGG 0.369113 5_1:-16075587 None:intergenic
TTTGGCTTCGGGTACGGGTT+CGG 0.370928 5_1:-16071585 None:intergenic
TCCGGCTCCGGTTGAGGAAC+CGG 0.374158 5_1:+16071892 Msa0720130:CDS
TTGGGTGGGCAGAGGGAAAT+GGG 0.375489 5_1:-16075404 None:intergenic
GGATAAAGATGGTTTGGCTT+CGG 0.381703 5_1:-16071597 None:intergenic
CTTGGAGGATAAAGATGGTT+TGG 0.383173 5_1:-16071603 None:intergenic
ATCCTCCAAGGTTTCAGGTT+CGG 0.389859 5_1:+16071616 Msa0720130:CDS
TCCTTCCTCCACCGGAGCTT+CGG 0.393349 5_1:-16071732 None:intergenic
CGGTTTATGGGACTGAGCTT+GGG 0.396439 5_1:+16071798 Msa0720130:CDS
ACCCCATTCATCGGAGATAT+CGG 0.397999 5_1:-16071555 None:intergenic
CACCGATATCTCCGATGAAT+GGG 0.399176 5_1:+16071553 Msa0720130:CDS
ACGGTTTATGGGACTGAGCT+TGG 0.399549 5_1:+16071797 Msa0720130:CDS
GAGTCCCCTTCTTGATTAGT+AGG 0.407924 5_1:+16075312 Msa0720130:exon
GATGGTTTGGCTTCGGGTAC+GGG 0.411549 5_1:-16071590 None:intergenic
GCAACAATCTCTCGGTCCTC+TGG 0.412778 5_1:+16075126 Msa0720130:CDS
TTCGAAGAACGAGGATGAAT+GGG 0.414775 5_1:+16071643 Msa0720130:CDS
AGAAGCTCCGGTTCCTCAAC+CGG 0.420996 5_1:-16071899 None:intergenic
GGAGGGAATGATGAGCTTGA+GGG 0.424981 5_1:+16071752 Msa0720130:CDS
AGTTATAGCGATGCTGGAAA+TGG 0.426266 5_1:+16071692 Msa0720130:CDS
TGGGTGGGCAGAGGGAAATG+GGG 0.428409 5_1:-16075403 None:intergenic
GCTTGTCCTCTCACCAGGTA+TGG 0.429636 5_1:-16075206 None:intergenic
CCCTACTCCGGCTCCGGTTG+AGG 0.430919 5_1:+16071886 Msa0720130:CDS
GTCTCCGATGTCGCCGGTGG+CGG 0.433948 5_1:-16071516 None:intergenic
CCACCGATATCTCCGATGAA+TGG 0.434882 5_1:+16071552 Msa0720130:CDS
GGGAGAGAAGAGAGAGAAGA+AGG 0.440214 5_1:-16071437 None:intergenic
CTTCGAAGAACGAGGATGAA+TGG 0.442545 5_1:+16071642 Msa0720130:CDS
CTGAAAGATGATGAGGCAAA+AGG 0.448168 5_1:-16072943 None:intergenic
AGATGGTTTGGCTTCGGGTA+CGG 0.450269 5_1:-16071591 None:intergenic
TCCGGTTCCTCAACCGGAGC+CGG 0.453594 5_1:-16071893 None:intergenic
TCGAAGCCCTGCAAGAATAC+AGG 0.454672 5_1:+16072987 Msa0720130:CDS
TCCTCAACCGGAGCCGGAGT+AGG 0.454857 5_1:-16071887 None:intergenic
GTTCACAACAGTGGAGCTAT+AGG 0.458564 5_1:-16072902 None:intergenic
GGAGCTTCTTAATGGAAATT+GGG 0.463360 5_1:+16071913 Msa0720130:CDS
AGCAGCAGGAGCATTACCTT+TGG 0.464327 5_1:+16072846 Msa0720130:CDS
TGCTAACCCTACTCCGGCTC+CGG 0.466564 5_1:+16071880 Msa0720130:CDS
GAAACGTGCTCTTGTTGATA+CGG 0.468444 5_1:+16071778 Msa0720130:CDS
AGCTGAGGTGTCTGAGTTCG+TGG 0.468844 5_1:+16071844 Msa0720130:CDS
AGGAACCGAACCTGAAACCT+TGG 0.476928 5_1:-16071621 None:intergenic
CTGTTTGTCCTTGCAAGAGA+AGG 0.478451 5_1:+16075289 Msa0720130:CDS
GGCTTCTGCTACCGAAGCTC+CGG 0.480527 5_1:+16071721 Msa0720130:CDS
GCCGGGAGTTATAGCGATGC+TGG 0.482610 5_1:+16071686 Msa0720130:CDS
GCTTGGGTTTCGAGCTGGGT+CGG 0.485721 5_1:+16071814 Msa0720130:CDS
ACAAGGACTTGCGAATATCA+AGG 0.487719 5_1:+16075254 Msa0720130:CDS
GTCTGAGTTCGTGGCTAAGT+TGG 0.496640 5_1:+16071853 Msa0720130:CDS
CTCCGCTTCATCTCCGCCAC+CGG 0.499195 5_1:+16071503 Msa0720130:CDS
ATCTCCGCCACCGGCGACAT+CGG 0.499838 5_1:+16071512 Msa0720130:CDS
CAATTTCCATTAAGAAGCTC+CGG 0.508343 5_1:-16071911 None:intergenic
TCATTCCCTCCTTCCTCCAC+CGG 0.509274 5_1:-16071740 None:intergenic
GGAGCTTCGGTAGCAGAAGC+CGG 0.511929 5_1:-16071719 None:intergenic
CATTCATCCTCGTTCTTCGA+AGG 0.514164 5_1:-16071641 None:intergenic
GCGGAGATGAAGCGGAGAGA+AGG 0.516052 5_1:-16071497 None:intergenic
AGGAGGGAATGATGAGCTTG+AGG 0.516146 5_1:+16071751 Msa0720130:CDS
AGCATTACCTTTGGTGAAGG+TGG 0.517212 5_1:+16072855 Msa0720130:CDS
CCAGGTATGGGAATCTTAAG+AGG 0.518200 5_1:-16075193 None:intergenic
CAAGAGCTTGTCCTCTCACC+AGG 0.518418 5_1:-16075211 None:intergenic
CTGTTGCCTCTTCTAGCAGC+AGG 0.518463 5_1:+16072832 Msa0720130:CDS
TGAAAGATGATGAGGCAAAA+GGG 0.519153 5_1:-16072942 None:intergenic
TTTGGCCAAAATCTTAGCCT+GGG 0.525313 5_1:+16075097 Msa0720130:CDS
CAAACCATCTTTATCCTCCA+AGG 0.525376 5_1:+16071604 Msa0720130:CDS
TACTTCCTACTAATCAAGAA+GGG 0.525799 5_1:-16075317 None:intergenic
CTTGTCCTCTCACCAGGTAT+GGG 0.526234 5_1:-16075205 None:intergenic
TGCTACCGAAGCTCCGGTGG+AGG 0.528076 5_1:+16071727 Msa0720130:CDS
GAAACCTTGGAGGATAAAGA+TGG 0.529624 5_1:-16071608 None:intergenic
CTGGTGAGAGGACAAGCTCT+TGG 0.530530 5_1:+16075212 Msa0720130:CDS
GTGGGCAGAGGGAAATGGGG+TGG 0.530810 5_1:-16075400 None:intergenic
GGATTTCTCACCCCATTCAT+CGG 0.532988 5_1:-16071564 None:intergenic
CAAGTCCTTGTCAAGATATG+TGG 0.538461 5_1:-16075242 None:intergenic
CCTCAACCGGAGCCGGAGTA+GGG 0.538823 5_1:-16071886 None:intergenic
TGAAGCGGAGAGAAGGGAAT+CGG 0.540766 5_1:-16071490 None:intergenic
GAGATTGTTGCAGAGGCCCC+AGG 0.541693 5_1:-16075114 None:intergenic
TCCAGCATCGCTATAACTCC+CGG 0.541701 5_1:-16071687 None:intergenic
CGCCGGTGGCGGAGATGAAG+CGG 0.543024 5_1:-16071505 None:intergenic
GGGCCTCTGCAACAATCTCT+CGG 0.543281 5_1:+16075118 Msa0720130:CDS
TTACTTCCTACTAATCAAGA+AGG 0.544198 5_1:-16075318 None:intergenic
ACCGAAGCTCCGGTGGAGGA+AGG 0.544424 5_1:+16071731 Msa0720130:CDS
AATCAGGTTACATTCAAAGA+AGG 0.544455 5_1:+16075016 Msa0720130:intron
CGGAGATGAAGCGGAGAGAA+GGG 0.547347 5_1:-16071496 None:intergenic
TGTTTGTCCTTGCAAGAGAA+GGG 0.549187 5_1:+16075290 Msa0720130:CDS
AGAATTAAGGTTTACAACAC+AGG 0.549723 5_1:-16075530 None:intergenic
CAAGGACTTGCGAATATCAA+GGG 0.550792 5_1:+16075255 Msa0720130:CDS
GGACCGAGAGATTGTTGCAG+AGG 0.552909 5_1:-16075121 None:intergenic
ATGTGTATTAAAGGAACTTG+TGG 0.554433 5_1:-16071319 None:intergenic
CCTCTTAAGATTCCCATACC+TGG 0.555697 5_1:+16075193 Msa0720130:CDS
GAGGGAATGATGAGCTTGAG+GGG 0.557038 5_1:+16071753 Msa0720130:CDS
AGAATACCTGTATTCTTGCA+GGG 0.561505 5_1:-16072993 None:intergenic
AACGAGGATGAATGGGGAGA+AGG 0.562177 5_1:+16071650 Msa0720130:CDS
AACCGAACCTGAAACCTTGG+AGG 0.564163 5_1:-16071618 None:intergenic
TGGGTCGGAGGTTCGAGCTG+AGG 0.566095 5_1:+16071829 Msa0720130:CDS
TTCTGCTACCGAAGCTCCGG+TGG 0.570205 5_1:+16071724 Msa0720130:CDS
AGAGAAGAGACATGGCGAAA+CGG 0.572628 5_1:-16071370 None:intergenic
GATGAGAGGAACACGTAGTG+TGG 0.575131 5_1:-16071396 None:intergenic
TCTCGGTCCTCTGGAGAATG+TGG 0.575723 5_1:+16075135 Msa0720130:CDS
AGGAGCATTACCTTTGGTGA+AGG 0.578672 5_1:+16072852 Msa0720130:CDS
GAATATCAAGGGGAGATGGC+GGG 0.578933 5_1:+16075266 Msa0720130:CDS
ATTTCACCTAAGCTAATAAG+GGG 0.579026 5_1:-16075586 None:intergenic
CGATGCTGGAAATGGAACTC+CGG 0.580650 5_1:+16071700 Msa0720130:CDS
GAAGCTCCGGTGGAGGAAGG+AGG 0.581497 5_1:+16071734 Msa0720130:CDS
GGGGACTCCCTTCTCTTGCA+AGG 0.586669 5_1:-16075297 None:intergenic
TTGCGAATATCAAGGGGAGA+TGG 0.589364 5_1:+16075262 Msa0720130:CDS
GAAGGGAATCGGTGAGAGCG+AGG 0.590945 5_1:-16071479 None:intergenic
CTGCCCACCCAAAATGTGAA+AGG 0.591170 5_1:+16075415 Msa0720130:three_prime_UTR
CGAATATCAAGGGGAGATGG+CGG 0.593044 5_1:+16075265 Msa0720130:CDS
TGGGTTTCGAGCTGGGTCGG+AGG 0.599924 5_1:+16071817 Msa0720130:CDS
AAGCTCCGGTGGAGGAAGGA+GGG 0.601932 5_1:+16071735 Msa0720130:CDS
AGGGCTTCGAACTTCAAATG+AGG 0.604253 5_1:-16072974 None:intergenic
TTGGCCAAAATCTTAGCCTG+GGG 0.612553 5_1:+16075098 Msa0720130:CDS
ATCAGCGTCTCCGATGTCGC+CGG 0.617514 5_1:-16071522 None:intergenic
AGCGTCTCCGATGTCGCCGG+TGG 0.618124 5_1:-16071519 None:intergenic
AATGCTCCTGCTGCTAGAAG+AGG 0.620670 5_1:-16072838 None:intergenic
TTCGGTTCCTTCGAAGAACG+AGG 0.624221 5_1:+16071634 Msa0720130:CDS
TCATCGGAGATATCGGTGGA+TGG 0.639488 5_1:-16071548 None:intergenic
ACTTCCTACTAATCAAGAAG+GGG 0.640290 5_1:-16075316 None:intergenic
AGATGCACTGAAAGATGATG+AGG 0.643499 5_1:-16072950 None:intergenic
AGATTCCCATACCTGGTGAG+AGG 0.651644 5_1:+16075200 Msa0720130:CDS
TCTTACCACATATCTTGACA+AGG 0.653066 5_1:+16075237 Msa0720130:CDS
CCATTCATCGGAGATATCGG+TGG 0.655548 5_1:-16071552 None:intergenic
GGAAGCTGCTAACCCTACTC+CGG 0.655632 5_1:+16071874 Msa0720130:CDS
TGTGGAAGAGAGAAGAGACA+TGG 0.661649 5_1:-16071378 None:intergenic
TCGAAGAACGAGGATGAATG+GGG 0.664578 5_1:+16071644 Msa0720130:CDS
ACCGATATCTCCGATGAATG+GGG 0.667674 5_1:+16071554 Msa0720130:CDS
AAGGACTTGCGAATATCAAG+GGG 0.684902 5_1:+16075256 Msa0720130:CDS
TGTCACAGAGTTCACAACAG+TGG 0.699209 5_1:-16072911 None:intergenic
TTTCACCTAAGCTAATAAGG+GGG 0.706298 5_1:-16075585 None:intergenic
CTTGCAACCACATTCTCCAG+AGG 0.715896 5_1:-16075142 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTCTTTTTTATATT+CGG + chr5_1:16075377-16075396 Msa0720130:three_prime_UTR 10.0%
!!! TTTTATATATAACAGAATTA+AGG - chr5_1:16075546-16075565 None:intergenic 10.0%
!!! ATTTTTAATTTCTCCAAATT+TGG + chr5_1:16071284-16071303 Msa0720130:five_prime_UTR 15.0%
!!! TTTTTAATTTCTCCAAATTT+GGG + chr5_1:16071285-16071304 Msa0720130:five_prime_UTR 15.0%
!!! TTTTACGAATTTTAATCATA+GGG + chr5_1:16072098-16072117 Msa0720130:intron 15.0%
!!! ATTAATGATCTTTTTAATGT+TGG + chr5_1:16072338-16072357 Msa0720130:intron 15.0%
!!! TTAATGATCTTTTTAATGTT+GGG + chr5_1:16072339-16072358 Msa0720130:intron 15.0%
!! TAAACTATTTATATTGCAAA+AGG + chr5_1:16072447-16072466 Msa0720130:intron 15.0%
!! TTCATTACTAAATTGAAAAA+AGG + chr5_1:16073033-16073052 Msa0720130:intron 15.0%
!!! ATTATTTTCTTAGATATGAT+AGG - chr5_1:16073404-16073423 None:intergenic 15.0%
!! CAAAACTGTAATATTATTTA+TGG + chr5_1:16073625-16073644 Msa0720130:intron 15.0%
!! TGTAATATTATTTATGGAAA+AGG + chr5_1:16073631-16073650 Msa0720130:intron 15.0%
!!! TAAATTAAGTTGATTTTTCA+CGG - chr5_1:16074570-16074589 None:intergenic 15.0%
!! AGAAATGAAATGTGTATTAA+AGG - chr5_1:16071331-16071350 None:intergenic 20.0%
!!! CTTTTACGAATTTTAATCAT+AGG + chr5_1:16072097-16072116 Msa0720130:intron 20.0%
!! TAAATTGAAAAAAGGCAAAA+AGG + chr5_1:16073041-16073060 Msa0720130:intron 20.0%
!!! TTTTGTTATCTTGATTTTAC+GGG - chr5_1:16073610-16073629 None:intergenic 20.0%
!!! GTTTTGTTATCTTGATTTTA+CGG - chr5_1:16073611-16073630 None:intergenic 20.0%
!!! TGGAATAGAGATTTTATTAA+CGG - chr5_1:16074254-16074273 None:intergenic 20.0%
!!! TTCTCCTTTTTATTTCTTTT+GGG - chr5_1:16074526-16074545 None:intergenic 20.0%
!!! AATGATTAACTTGTAACAAA+GGG - chr5_1:16074925-16074944 None:intergenic 20.0%
!!! TAATGATTAACTTGTAACAA+AGG - chr5_1:16074926-16074945 None:intergenic 20.0%
! TTCGTTGTGTTTAATATTAC+TGG + chr5_1:16071974-16071993 Msa0720130:intron 25.0%
! ATAAGATGTTAACACAAACA+GGG - chr5_1:16072382-16072401 None:intergenic 25.0%
! AATAAGATGTTAACACAAAC+AGG - chr5_1:16072383-16072402 None:intergenic 25.0%
!! ACAACTTATTGCAATGTTTT+AGG + chr5_1:16072553-16072572 Msa0720130:intron 25.0%
!! ATGTTTTCAATGCAAAGTAA+AGG - chr5_1:16072669-16072688 None:intergenic 25.0%
!! ATTTTGTATCTTAGAAACGA+AGG + chr5_1:16072694-16072713 Msa0720130:intron 25.0%
! AATTTAGTAATGAAATGCGA+AGG - chr5_1:16073027-16073046 None:intergenic 25.0%
! GATACTTATCTAATGAGAAA+AGG - chr5_1:16073161-16073180 None:intergenic 25.0%
! TAGTAAGTTACTGTGAAATA+TGG + chr5_1:16073235-16073254 Msa0720130:intron 25.0%
! TTAGATATGATAGGACATTA+AGG - chr5_1:16073395-16073414 None:intergenic 25.0%
! GTCTGAGTAGTTAATTTAAA+TGG - chr5_1:16073448-16073467 None:intergenic 25.0%
! ACATTCTGTTATAAAAGTGA+GGG - chr5_1:16073818-16073837 None:intergenic 25.0%
! AACATTCTGTTATAAAAGTG+AGG - chr5_1:16073819-16073838 None:intergenic 25.0%
! CTTAACAGCTTATTAACAAT+TGG - chr5_1:16074347-16074366 None:intergenic 25.0%
! TACACCCAAAAGAAATAAAA+AGG + chr5_1:16074519-16074538 Msa0720130:intron 25.0%
!!! CTTCTCCTTTTTATTTCTTT+TGG - chr5_1:16074527-16074546 None:intergenic 25.0%
! CAAAAGAAATAAAAAGGAGA+AGG + chr5_1:16074525-16074544 Msa0720130:intron 25.0%
!! AAATAAAAAGGAGAAGGTAT+AGG + chr5_1:16074531-16074550 Msa0720130:intron 25.0%
! ATACTAAGAAAACCATTTGT+CGG - chr5_1:16074656-16074675 None:intergenic 25.0%
! CTTAGTATTAAGCAATAAGA+TGG + chr5_1:16074668-16074687 Msa0720130:intron 25.0%
! TAACACTTCTAAATGAAATC+AGG + chr5_1:16075000-16075019 Msa0720130:intron 25.0%
!! TCAATTTTAGACTTTATCTC+TGG - chr5_1:16075055-16075074 None:intergenic 25.0%
!!! AAATGTTTATGTTTTCTGGT+AGG - chr5_1:16075078-16075097 None:intergenic 25.0%
!! CCAAAAATGTTTATGTTTTC+TGG - chr5_1:16075082-16075101 None:intergenic 25.0%
!! CCAGAAAACATAAACATTTT+TGG + chr5_1:16075079-16075098 Msa0720130:CDS 25.0%
!! GAATATACCTTTCACATTTT+GGG - chr5_1:16075425-16075444 None:intergenic 25.0%
!! TGAATATACCTTTCACATTT+TGG - chr5_1:16075426-16075445 None:intergenic 25.0%
!!! GCCTATGTGTTTTTTTTTAA+CGG + chr5_1:16075498-16075517 Msa0720130:three_prime_UTR 25.0%
! ACCGTTAAAAAAAAACACAT+AGG - chr5_1:16075502-16075521 None:intergenic 25.0%
! TATTTCACCTAAGCTAATAA+GGG - chr5_1:16075590-16075609 None:intergenic 25.0%
! TTATTTCACCTAAGCTAATA+AGG - chr5_1:16075591-16075610 None:intergenic 25.0%
ATGTGTATTAAAGGAACTTG+TGG - chr5_1:16071322-16071341 None:intergenic 30.0%
ACGGTTGAAACTGAAAAATT+TGG - chr5_1:16071354-16071373 None:intergenic 30.0%
AGTTTGATTGACATCATAGT+TGG + chr5_1:16072128-16072147 Msa0720130:intron 30.0%
GTTTGATTGACATCATAGTT+GGG + chr5_1:16072129-16072148 Msa0720130:intron 30.0%
! TACGTTTTATGAGACTGTTT+GGG - chr5_1:16072598-16072617 None:intergenic 30.0%
! ATACGTTTTATGAGACTGTT+TGG - chr5_1:16072599-16072618 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr5_1:16072623-16072642 None:intergenic 30.0%
ACTTTGCATTGAAAACATAG+AGG + chr5_1:16072671-16072690 Msa0720130:intron 30.0%
! ATGATTGTCAAACTGATTTC+AGG + chr5_1:16072791-16072810 Msa0720130:intron 30.0%
TATCTAATGAGAAAAGGCTT+TGG - chr5_1:16073155-16073174 None:intergenic 30.0%
AATCACAACACAACATCAAT+TGG - chr5_1:16073272-16073291 None:intergenic 30.0%
AAAAAAAACCCTAGATGAGA+TGG + chr5_1:16073349-16073368 Msa0720130:intron 30.0%
AAAAAAACCCTAGATGAGAT+GGG + chr5_1:16073350-16073369 Msa0720130:intron 30.0%
CAATTTACAAAAGCCTTAGT+TGG + chr5_1:16073517-16073536 Msa0720130:intron 30.0%
TGAGAAATATTGTCAGAAGT+TGG - chr5_1:16073775-16073794 None:intergenic 30.0%
AGGGAAGAATTAGTTACAAT+TGG + chr5_1:16074038-16074057 Msa0720130:intron 30.0%
AGAATTAGTTACAATTGGTG+AGG + chr5_1:16074043-16074062 Msa0720130:intron 30.0%
TTGGTTAGGAAAATTATCTC+TGG + chr5_1:16074155-16074174 Msa0720130:intron 30.0%
TTAGGAAAATTATCTCTGGT+AGG + chr5_1:16074159-16074178 Msa0720130:intron 30.0%
GAAGAAAAGGAAATAACCAA+GGG - chr5_1:16074207-16074226 None:intergenic 30.0%
AGAAGAAAAGGAAATAACCA+AGG - chr5_1:16074208-16074227 None:intergenic 30.0%
AATAGCTCTTACAGAAGAAA+AGG - chr5_1:16074220-16074239 None:intergenic 30.0%
ACTGAGAATTCAAGTATCAA+TGG - chr5_1:16074274-16074293 None:intergenic 30.0%
AAAAACAATACTGTGAACTC+AGG - chr5_1:16074749-16074768 None:intergenic 30.0%
AATCAGGTTACATTCAAAGA+AGG + chr5_1:16075016-16075035 Msa0720130:intron 30.0%
! ATTTTAGACTTTATCTCTGG+AGG - chr5_1:16075052-16075071 None:intergenic 30.0%
TACTTCCTACTAATCAAGAA+GGG - chr5_1:16075320-16075339 None:intergenic 30.0%
TTACTTCCTACTAATCAAGA+AGG - chr5_1:16075321-16075340 None:intergenic 30.0%
TCAAGCTGTTGTGTATTTAA+AGG + chr5_1:16075468-16075487 Msa0720130:three_prime_UTR 30.0%
AGAATTAAGGTTTACAACAC+AGG - chr5_1:16075533-16075552 None:intergenic 30.0%
ATTTCACCTAAGCTAATAAG+GGG - chr5_1:16075589-16075608 None:intergenic 30.0%
GAAAGTGAATCACCCAAATT+TGG - chr5_1:16071300-16071319 None:intergenic 35.0%
AAGAGAGAGAAGAAGGTTTA+GGG - chr5_1:16071433-16071452 None:intergenic 35.0%
CTCTTGTTGATACGGTTTAT+GGG + chr5_1:16071786-16071805 Msa0720130:CDS 35.0%
CAATTTCCATTAAGAAGCTC+CGG - chr5_1:16071914-16071933 None:intergenic 35.0%
GGAGCTTCTTAATGGAAATT+GGG + chr5_1:16071913-16071932 Msa0720130:CDS 35.0%
TATACTATGAAGCACAAGCA+CGG + chr5_1:16072166-16072185 Msa0720130:intron 35.0%
ACGTCACACTGATAATAAGT+TGG + chr5_1:16072209-16072228 Msa0720130:intron 35.0%
!! GTTGGGAGTATTTAGAACTT+AGG + chr5_1:16072356-16072375 Msa0720130:intron 35.0%
CAAAATAAGCCAATCCAAAC+AGG + chr5_1:16072643-16072662 Msa0720130:intron 35.0%
!!! AAACGAAGGTATTTTTGCCA+CGG + chr5_1:16072708-16072727 Msa0720130:intron 35.0%
!!! TTTTGAGTTAGTTACATCCG+TGG - chr5_1:16072728-16072747 None:intergenic 35.0%
! ATTTTATCCACCTTCACCAA+AGG - chr5_1:16072865-16072884 None:intergenic 35.0%
TGAAAGATGATGAGGCAAAA+GGG - chr5_1:16072945-16072964 None:intergenic 35.0%
AGAATACCTGTATTCTTGCA+GGG - chr5_1:16072996-16073015 None:intergenic 35.0%
AAAAAAAGAGCAAACCTCGT+AGG + chr5_1:16073089-16073108 Msa0720130:intron 35.0%
! AAAGGCTTTGGTTATTGTTG+TGG - chr5_1:16073143-16073162 None:intergenic 35.0%
CACAATATCAAGGATTGTGA+CGG - chr5_1:16073198-16073217 None:intergenic 35.0%
TTGATGTTGTGTTGTGATTG+CGG + chr5_1:16073273-16073292 Msa0720130:intron 35.0%
TGAGAGTCTTAATCACTCTT+GGG - chr5_1:16073548-16073567 None:intergenic 35.0%
TTGAGAGTCTTAATCACTCT+TGG - chr5_1:16073549-16073568 None:intergenic 35.0%
! TCACTAAGTCTGAAGCTAAA+GGG - chr5_1:16073582-16073601 None:intergenic 35.0%
! ATCACTAAGTCTGAAGCTAA+AGG - chr5_1:16073583-16073602 None:intergenic 35.0%
CTGTTATAAAAGTGAGGGAA+AGG - chr5_1:16073813-16073832 None:intergenic 35.0%
TTAGTCCAGTAAGAGTTAGT+GGG - chr5_1:16073862-16073881 None:intergenic 35.0%
TTTCCAAATTGCTGACCTAT+GGG - chr5_1:16073989-16074008 None:intergenic 35.0%
! CAATTTGGAAAGTGTATGTC+AGG + chr5_1:16073998-16074017 Msa0720130:intron 35.0%
TGTATGTCAGGAAAAGGAAA+GGG + chr5_1:16074010-16074029 Msa0720130:intron 35.0%
ATTAGTTACAATTGGTGAGG+TGG + chr5_1:16074046-16074065 Msa0720130:intron 35.0%
! GAGAGAATCATTCATGCTTT+TGG + chr5_1:16074125-16074144 Msa0720130:intron 35.0%
!! TCATGCTTTTGGTGATTTGT+TGG + chr5_1:16074136-16074155 Msa0720130:intron 35.0%
!!! CTTTTGGTGATTTGTTGGTT+AGG + chr5_1:16074141-16074160 Msa0720130:intron 35.0%
CTATCACCTAGCAAGTTAAA+CGG + chr5_1:16074296-16074315 Msa0720130:intron 35.0%
! AGTTAAACGGTTGAGTTTTG+TGG + chr5_1:16074309-16074328 Msa0720130:intron 35.0%
!! GTTAAACGGTTGAGTTTTGT+GGG + chr5_1:16074310-16074329 Msa0720130:intron 35.0%
CAACACATACATATTGCTCA+AGG + chr5_1:16074387-16074406 Msa0720130:intron 35.0%
ACTAAGGTAGTATGTCAGTA+GGG - chr5_1:16074469-16074488 None:intergenic 35.0%
AACTAAGGTAGTATGTCAGT+AGG - chr5_1:16074470-16074489 None:intergenic 35.0%
ACAAACAGAAGAGCTTATGA+AGG - chr5_1:16074623-16074642 None:intergenic 35.0%
AAGAACAAATACAACGTGAC+TGG - chr5_1:16074815-16074834 None:intergenic 35.0%
!! AAAAAGTTCTAAGCAAGCTG+AGG - chr5_1:16074953-16074972 None:intergenic 35.0%
!! AGTATATCACGTGTCATTTC+AGG + chr5_1:16075163-16075182 Msa0720130:CDS 35.0%
TCTTACCACATATCTTGACA+AGG + chr5_1:16075237-16075256 Msa0720130:CDS 35.0%
ACTTCCTACTAATCAAGAAG+GGG - chr5_1:16075319-16075338 None:intergenic 35.0%
!! ATACCTTTCACATTTTGGGT+GGG - chr5_1:16075421-16075440 None:intergenic 35.0%
! TATACCTTTCACATTTTGGG+TGG - chr5_1:16075422-16075441 None:intergenic 35.0%
TTTCACCTAAGCTAATAAGG+GGG - chr5_1:16075588-16075607 None:intergenic 35.0%
GAAGAGAGAGAAGAAGGTTT+AGG - chr5_1:16071434-16071453 None:intergenic 40.0%
! GATAAAGATGGTTTGGCTTC+GGG - chr5_1:16071599-16071618 None:intergenic 40.0%
! GGATAAAGATGGTTTGGCTT+CGG - chr5_1:16071600-16071619 None:intergenic 40.0%
CTTGGAGGATAAAGATGGTT+TGG - chr5_1:16071606-16071625 None:intergenic 40.0%
CAAACCATCTTTATCCTCCA+AGG + chr5_1:16071604-16071623 Msa0720130:CDS 40.0%
GAAACCTTGGAGGATAAAGA+TGG - chr5_1:16071611-16071630 None:intergenic 40.0%
TCTTTATCCTCCAAGGTTTC+AGG + chr5_1:16071611-16071630 Msa0720130:CDS 40.0%
TTCGAAGAACGAGGATGAAT+GGG + chr5_1:16071643-16071662 Msa0720130:CDS 40.0%
AGTTATAGCGATGCTGGAAA+TGG + chr5_1:16071692-16071711 Msa0720130:CDS 40.0%
GAAACGTGCTCTTGTTGATA+CGG + chr5_1:16071778-16071797 Msa0720130:CDS 40.0%
GCTCTTGTTGATACGGTTTA+TGG + chr5_1:16071785-16071804 Msa0720130:CDS 40.0%
CGGAGCTTCTTAATGGAAAT+TGG + chr5_1:16071912-16071931 Msa0720130:CDS 40.0%
!! GCTGTTTTCACAAGCTATCT+TGG + chr5_1:16072506-16072525 Msa0720130:intron 40.0%
AAGTAAAGGCCTGTTTGGAT+TGG - chr5_1:16072655-16072674 None:intergenic 40.0%
ATGCAAAGTAAAGGCCTGTT+TGG - chr5_1:16072660-16072679 None:intergenic 40.0%
CTGAAAGATGATGAGGCAAA+AGG - chr5_1:16072946-16072965 None:intergenic 40.0%
AGATGCACTGAAAGATGATG+AGG - chr5_1:16072953-16072972 None:intergenic 40.0%
GAGAATACCTGTATTCTTGC+AGG - chr5_1:16072997-16073016 None:intergenic 40.0%
! TTCTAGCTGTCATGTGAAAG+AGG + chr5_1:16073064-16073083 Msa0720130:intron 40.0%
! TATTTTGCCTTTCACCTACG+AGG - chr5_1:16073106-16073125 None:intergenic 40.0%
CGTCACAATCCTTGATATTG+TGG + chr5_1:16073196-16073215 Msa0720130:intron 40.0%
TGCAACTCTCCACAATATCA+AGG - chr5_1:16073208-16073227 None:intergenic 40.0%
CGTATAACCCATCTCATCTA+GGG - chr5_1:16073360-16073379 None:intergenic 40.0%
TCGTATAACCCATCTCATCT+AGG - chr5_1:16073361-16073380 None:intergenic 40.0%
ATGGAAAAGGTTGAGCACAA+AGG + chr5_1:16073644-16073663 Msa0720130:intron 40.0%
ATATCCCCACTAACTCTTAC+TGG + chr5_1:16073854-16073873 Msa0720130:intron 40.0%
TAGTCCAGTAAGAGTTAGTG+GGG - chr5_1:16073861-16073880 None:intergenic 40.0%
CTTAGTCCAGTAAGAGTTAG+TGG - chr5_1:16073863-16073882 None:intergenic 40.0%
CACTAACTCTTACTGGACTA+AGG + chr5_1:16073861-16073880 Msa0720130:intron 40.0%
! GTTGATAGGACTCTGTGTTT+GGG - chr5_1:16073887-16073906 None:intergenic 40.0%
! TGTTGATAGGACTCTGTGTT+TGG - chr5_1:16073888-16073907 None:intergenic 40.0%
AACACAGAGTCCTATCAACA+TGG + chr5_1:16073888-16073907 Msa0720130:intron 40.0%
!! GGAGTATTGATAGGACTTGT+GGG + chr5_1:16073926-16073945 Msa0720130:intron 40.0%
TTCCAAATTGCTGACCTATG+GGG - chr5_1:16073988-16074007 None:intergenic 40.0%
CTTTCCAAATTGCTGACCTA+TGG - chr5_1:16073990-16074009 None:intergenic 40.0%
! GGAAAGTGTATGTCAGGAAA+AGG + chr5_1:16074004-16074023 Msa0720130:intron 40.0%
GTGTATGTCAGGAAAAGGAA+AGG + chr5_1:16074009-16074028 Msa0720130:intron 40.0%
GTATGTCAGGAAAAGGAAAG+GGG + chr5_1:16074011-16074030 Msa0720130:intron 40.0%
TATGTCAGGAAAAGGAAAGG+GGG + chr5_1:16074012-16074031 Msa0720130:intron 40.0%
AGGTGGTAGGAATATTCTCT+AGG + chr5_1:16074063-16074082 Msa0720130:intron 40.0%
TGGTAGGAATATTCTCTAGG+TGG + chr5_1:16074066-16074085 Msa0720130:intron 40.0%
!! ACTCAACCGTTTAACTTGCT+AGG - chr5_1:16074305-16074324 None:intergenic 40.0%
! CATATTGCTCAAGGTACTAC+TGG + chr5_1:16074396-16074415 Msa0720130:intron 40.0%
! CTGGTTTGCATCTTTCTGAA+AGG + chr5_1:16074415-16074434 Msa0720130:intron 40.0%
AAGGCACAACTAAGGAACTA+AGG - chr5_1:16074485-16074504 None:intergenic 40.0%
TAGTTCCTTAGTTGTGCCTT+TGG + chr5_1:16074485-16074504 Msa0720130:intron 40.0%
AGTTCCTTAGTTGTGCCTTT+GGG + chr5_1:16074486-16074505 Msa0720130:intron 40.0%
GTATCGTGAAAACCGACAAA+TGG + chr5_1:16074641-16074660 Msa0720130:intron 40.0%
ATATTTGCATGACAGAGCAG+CGG - chr5_1:16074855-16074874 None:intergenic 40.0%
! TTTTGGCCAAAATCTTAGCC+TGG + chr5_1:16075096-16075115 Msa0720130:CDS 40.0%
TTTGGCCAAAATCTTAGCCT+GGG + chr5_1:16075097-16075116 Msa0720130:CDS 40.0%
CAAGTCCTTGTCAAGATATG+TGG - chr5_1:16075245-16075264 None:intergenic 40.0%
ACAAGGACTTGCGAATATCA+AGG + chr5_1:16075254-16075273 Msa0720130:CDS 40.0%
CAAGGACTTGCGAATATCAA+GGG + chr5_1:16075255-16075274 Msa0720130:CDS 40.0%
AAGGACTTGCGAATATCAAG+GGG + chr5_1:16075256-16075275 Msa0720130:CDS 40.0%
TGTTTGTCCTTGCAAGAGAA+GGG + chr5_1:16075290-16075309 Msa0720130:CDS 40.0%
AGAGAAGAGACATGGCGAAA+CGG - chr5_1:16071373-16071392 None:intergenic 45.0%
TGTGGAAGAGAGAAGAGACA+TGG - chr5_1:16071381-16071400 None:intergenic 45.0%
!!! GGGTTTTGAGAGAAGATGAG+AGG - chr5_1:16071413-16071432 None:intergenic 45.0%
CACCGATATCTCCGATGAAT+GGG + chr5_1:16071553-16071572 Msa0720130:CDS 45.0%
ACCGATATCTCCGATGAATG+GGG + chr5_1:16071554-16071573 Msa0720130:CDS 45.0%
ACCCCATTCATCGGAGATAT+CGG - chr5_1:16071558-16071577 None:intergenic 45.0%
GGATTTCTCACCCCATTCAT+CGG - chr5_1:16071567-16071586 None:intergenic 45.0%
!! ATCCTCCAAGGTTTCAGGTT+CGG + chr5_1:16071616-16071635 Msa0720130:CDS 45.0%
CATTCATCCTCGTTCTTCGA+AGG - chr5_1:16071644-16071663 None:intergenic 45.0%
CTTCGAAGAACGAGGATGAA+TGG + chr5_1:16071642-16071661 Msa0720130:CDS 45.0%
TCGAAGAACGAGGATGAATG+GGG + chr5_1:16071644-16071663 Msa0720130:CDS 45.0%
!! AGGAGCATTACCTTTGGTGA+AGG + chr5_1:16072852-16072871 Msa0720130:CDS 45.0%
AGCATTACCTTTGGTGAAGG+TGG + chr5_1:16072855-16072874 Msa0720130:CDS 45.0%
GTTCACAACAGTGGAGCTAT+AGG - chr5_1:16072905-16072924 None:intergenic 45.0%
TGTCACAGAGTTCACAACAG+TGG - chr5_1:16072914-16072933 None:intergenic 45.0%
AGGGCTTCGAACTTCAAATG+AGG - chr5_1:16072977-16072996 None:intergenic 45.0%
ATGTTGTGTTGTGATTGCGG+AGG + chr5_1:16073276-16073295 Msa0720130:intron 45.0%
GCACAAAGGCTCTACAATGA+TGG + chr5_1:16073658-16073677 Msa0720130:intron 45.0%
!! TAGAAGCATTGTGCTCTGGT+AGG - chr5_1:16073731-16073750 None:intergenic 45.0%
!! TGGTTAGAAGCATTGTGCTC+TGG - chr5_1:16073735-16073754 None:intergenic 45.0%
AGCACAATGCTTCTAACCAG+AGG + chr5_1:16073736-16073755 Msa0720130:intron 45.0%
GCACAATGCTTCTAACCAGA+GGG + chr5_1:16073737-16073756 Msa0720130:intron 45.0%
TGGTTAGTAGAGTTTCCCTC+TGG - chr5_1:16073755-16073774 None:intergenic 45.0%
TCACAAGCAGCCATGTTGAT+AGG - chr5_1:16073901-16073920 None:intergenic 45.0%
ATCAACATGGCTGCTTGTGA+CGG + chr5_1:16073901-16073920 Msa0720130:intron 45.0%
!! GGGAGTATTGATAGGACTTG+TGG + chr5_1:16073925-16073944 Msa0720130:intron 45.0%
TCCAAATTGCTGACCTATGG+GGG - chr5_1:16073987-16074006 None:intergenic 45.0%
GTTACAATTGGTGAGGTGGT+AGG + chr5_1:16074050-16074069 Msa0720130:intron 45.0%
TTATCTCTGGTAGGAGCCAT+AGG + chr5_1:16074168-16074187 Msa0720130:intron 45.0%
GGGAAAATATCCAGAGCCTA+TGG - chr5_1:16074187-16074206 None:intergenic 45.0%
!!! AGGCTCTGGATATTTTCCCT+TGG + chr5_1:16074188-16074207 Msa0720130:intron 45.0%
! TGTTGTTGTTCAGACGAGAC+AGG - chr5_1:16074372-16074391 None:intergenic 45.0%
GTGTAGTCAAAGATGCCCAA+AGG - chr5_1:16074504-16074523 None:intergenic 45.0%
TATTTGCATGACAGAGCAGC+GGG - chr5_1:16074854-16074873 None:intergenic 45.0%
TTGGCCAAAATCTTAGCCTG+GGG + chr5_1:16075098-16075117 Msa0720130:CDS 45.0%
CCAGGTATGGGAATCTTAAG+AGG - chr5_1:16075196-16075215 None:intergenic 45.0%
CCTCTTAAGATTCCCATACC+TGG + chr5_1:16075193-16075212 Msa0720130:CDS 45.0%
TTGCGAATATCAAGGGGAGA+TGG + chr5_1:16075262-16075281 Msa0720130:CDS 45.0%
CTGTTTGTCCTTGCAAGAGA+AGG + chr5_1:16075289-16075308 Msa0720130:CDS 45.0%
GAGTCCCCTTCTTGATTAGT+AGG + chr5_1:16075312-16075331 Msa0720130:exon 45.0%
! GTTCACCCCCTTATTAGCTT+AGG + chr5_1:16075580-16075599 Msa0720130:three_prime_UTR 45.0%
!!! AATAATAATATATATTGATT+TGG + chr5_1:16075606-16075625 Msa0720130:three_prime_UTR 5.0%
GATGAGAGGAACACGTAGTG+TGG - chr5_1:16071399-16071418 None:intergenic 50.0%
GGGAGAGAAGAGAGAGAAGA+AGG - chr5_1:16071440-16071459 None:intergenic 50.0%
GAGAGAGAGAGATTCGAGAG+GGG - chr5_1:16071460-16071479 None:intergenic 50.0%
GGAGAGAGAGAGATTCGAGA+GGG - chr5_1:16071461-16071480 None:intergenic 50.0%
AGGAGAGAGAGAGATTCGAG+AGG - chr5_1:16071462-16071481 None:intergenic 50.0%
TGAAGCGGAGAGAAGGGAAT+CGG - chr5_1:16071493-16071512 None:intergenic 50.0%
TCATCGGAGATATCGGTGGA+TGG - chr5_1:16071551-16071570 None:intergenic 50.0%
CCATTCATCGGAGATATCGG+TGG - chr5_1:16071555-16071574 None:intergenic 50.0%
CCACCGATATCTCCGATGAA+TGG + chr5_1:16071552-16071571 Msa0720130:CDS 50.0%
! AGATGGTTTGGCTTCGGGTA+CGG - chr5_1:16071594-16071613 None:intergenic 50.0%
AACCGAACCTGAAACCTTGG+AGG - chr5_1:16071621-16071640 None:intergenic 50.0%
AGGAACCGAACCTGAAACCT+TGG - chr5_1:16071624-16071643 None:intergenic 50.0%
TTCGGTTCCTTCGAAGAACG+AGG + chr5_1:16071634-16071653 Msa0720130:CDS 50.0%
AACGAGGATGAATGGGGAGA+AGG + chr5_1:16071650-16071669 Msa0720130:CDS 50.0%
GAAGGAGCGAAAAATGACGC+CGG + chr5_1:16071668-16071687 Msa0720130:CDS 50.0%
AAGGAGCGAAAAATGACGCC+GGG + chr5_1:16071669-16071688 Msa0720130:CDS 50.0%
TCCAGCATCGCTATAACTCC+CGG - chr5_1:16071690-16071709 None:intergenic 50.0%
CGATGCTGGAAATGGAACTC+CGG + chr5_1:16071700-16071719 Msa0720130:CDS 50.0%
AGGAGGGAATGATGAGCTTG+AGG + chr5_1:16071751-16071770 Msa0720130:CDS 50.0%
GGAGGGAATGATGAGCTTGA+GGG + chr5_1:16071752-16071771 Msa0720130:CDS 50.0%
GAGGGAATGATGAGCTTGAG+GGG + chr5_1:16071753-16071772 Msa0720130:CDS 50.0%
ACGGTTTATGGGACTGAGCT+TGG + chr5_1:16071797-16071816 Msa0720130:CDS 50.0%
CGGTTTATGGGACTGAGCTT+GGG + chr5_1:16071798-16071817 Msa0720130:CDS 50.0%
GTCTGAGTTCGTGGCTAAGT+TGG + chr5_1:16071853-16071872 Msa0720130:CDS 50.0%
GAGGAACCGGAGCTTCTTAA+TGG + chr5_1:16071905-16071924 Msa0720130:CDS 50.0%
TGAAGCACAAGCACGGATAC+CGG + chr5_1:16072173-16072192 Msa0720130:intron 50.0%
! TGGGTGCTGTCAGACACATT+TGG - chr5_1:16072271-16072290 None:intergenic 50.0%
! ACACTCCACATTGAAGGCGT+GGG - chr5_1:16072290-16072309 None:intergenic 50.0%
! GCACTGACACTCCACATTGA+AGG - chr5_1:16072296-16072315 None:intergenic 50.0%
AATGCTCCTGCTGCTAGAAG+AGG - chr5_1:16072841-16072860 None:intergenic 50.0%
!! AGCAGCAGGAGCATTACCTT+TGG + chr5_1:16072846-16072865 Msa0720130:CDS 50.0%
TCGAAGCCCTGCAAGAATAC+AGG + chr5_1:16072987-16073006 Msa0720130:CDS 50.0%
GAGCAAACCTCGTAGGTGAA+AGG + chr5_1:16073096-16073115 Msa0720130:intron 50.0%
CACAAAGAGCCATGATGTCG+TGG + chr5_1:16073299-16073318 Msa0720130:intron 50.0%
CAAGTGAAGCCACGACATCA+TGG - chr5_1:16073311-16073330 None:intergenic 50.0%
GTGGCTTCACTTGCAGTTGT+GGG + chr5_1:16073318-16073337 Msa0720130:intron 50.0%
CTCTTGGGAGCAACCAACTA+AGG - chr5_1:16073533-16073552 None:intergenic 50.0%
AGGGTTCACACTTCACACTC+TGG - chr5_1:16073708-16073727 None:intergenic 50.0%
AGCATTGTGCTCTGGTAGGA+GGG - chr5_1:16073727-16073746 None:intergenic 50.0%
! AAGCATTGTGCTCTGGTAGG+AGG - chr5_1:16073728-16073747 None:intergenic 50.0%
!! GTGACGGAGGGAGTATTGAT+AGG + chr5_1:16073917-16073936 Msa0720130:intron 50.0%
GGTCAACACCAGTATCCACA+TGG - chr5_1:16073966-16073985 None:intergenic 50.0%
!! ATACTGGTGTTGACCCCCAT+AGG + chr5_1:16073971-16073990 Msa0720130:intron 50.0%
ACCCCCATAGGTCAGCAATT+TGG + chr5_1:16073983-16074002 Msa0720130:intron 50.0%
! GATGCCCAAAGGCACAACTA+AGG - chr5_1:16074493-16074512 None:intergenic 50.0%
CTTGCAACCACATTCTCCAG+AGG - chr5_1:16075145-16075164 None:intergenic 50.0%
AGATTCCCATACCTGGTGAG+AGG + chr5_1:16075200-16075219 Msa0720130:CDS 50.0%
CTTGTCCTCTCACCAGGTAT+GGG - chr5_1:16075208-16075227 None:intergenic 50.0%
CGAATATCAAGGGGAGATGG+CGG + chr5_1:16075265-16075284 Msa0720130:CDS 50.0%
GAATATCAAGGGGAGATGGC+GGG + chr5_1:16075266-16075285 Msa0720130:CDS 50.0%
!! TCACATTTTGGGTGGGCAGA+GGG - chr5_1:16075414-16075433 None:intergenic 50.0%
!! TTCACATTTTGGGTGGGCAG+AGG - chr5_1:16075415-16075434 None:intergenic 50.0%
CTGCCCACCCAAAATGTGAA+AGG + chr5_1:16075415-16075434 Msa0720130:three_prime_UTR 50.0%
CGGAGATGAAGCGGAGAGAA+GGG - chr5_1:16071499-16071518 None:intergenic 55.0%
! TTTGGCTTCGGGTACGGGTT+CGG - chr5_1:16071588-16071607 None:intergenic 55.0%
! GATGGTTTGGCTTCGGGTAC+GGG - chr5_1:16071593-16071612 None:intergenic 55.0%
TCATTCCCTCCTTCCTCCAC+CGG - chr5_1:16071743-16071762 None:intergenic 55.0%
ACTGAGCTTGGGTTTCGAGC+TGG + chr5_1:16071809-16071828 Msa0720130:CDS 55.0%
CTGAGCTTGGGTTTCGAGCT+GGG + chr5_1:16071810-16071829 Msa0720130:CDS 55.0%
! AGCTGAGGTGTCTGAGTTCG+TGG + chr5_1:16071844-16071863 Msa0720130:CDS 55.0%
GGAAGCTGCTAACCCTACTC+CGG + chr5_1:16071874-16071893 Msa0720130:CDS 55.0%
AGAAGCTCCGGTTCCTCAAC+CGG - chr5_1:16071902-16071921 None:intergenic 55.0%
ACAAGCACGGATACCGGACA+GGG + chr5_1:16072179-16072198 Msa0720130:intron 55.0%
TGACGTCTCAATGCCCTGTC+CGG - chr5_1:16072195-16072214 None:intergenic 55.0%
GACACTCCACATTGAAGGCG+TGG - chr5_1:16072291-16072310 None:intergenic 55.0%
CTGTTGCCTCTTCTAGCAGC+AGG + chr5_1:16072832-16072851 Msa0720130:CDS 55.0%
CGTGGCTTCACTTGCAGTTG+TGG + chr5_1:16073317-16073336 Msa0720130:intron 55.0%
AACATGGCTGCTTGTGACGG+AGG + chr5_1:16073904-16073923 Msa0720130:intron 55.0%
! ACATGGCTGCTTGTGACGGA+GGG + chr5_1:16073905-16073924 Msa0720130:intron 55.0%
TCCACATGGAAGCCTGGATC+AGG - chr5_1:16073952-16073971 None:intergenic 55.0%
CCAGTATCCACATGGAAGCC+TGG - chr5_1:16073958-16073977 None:intergenic 55.0%
CCAGGCTTCCATGTGGATAC+TGG + chr5_1:16073955-16073974 Msa0720130:intron 55.0%
! AGGAAAAGGAAAGGGGGTGC+AGG + chr5_1:16074018-16074037 Msa0720130:intron 55.0%
! GGAAAAGGAAAGGGGGTGCA+GGG + chr5_1:16074019-16074038 Msa0720130:intron 55.0%
! GAGGCCCCAGGCTAAGATTT+TGG - chr5_1:16075105-16075124 None:intergenic 55.0%
GGGCCTCTGCAACAATCTCT+CGG + chr5_1:16075118-16075137 Msa0720130:CDS 55.0%
GGACCGAGAGATTGTTGCAG+AGG - chr5_1:16075124-16075143 None:intergenic 55.0%
GCAACAATCTCTCGGTCCTC+TGG + chr5_1:16075126-16075145 Msa0720130:CDS 55.0%
! TCTCGGTCCTCTGGAGAATG+TGG + chr5_1:16075135-16075154 Msa0720130:CDS 55.0%
GCTTGTCCTCTCACCAGGTA+TGG - chr5_1:16075209-16075228 None:intergenic 55.0%
CAAGAGCTTGTCCTCTCACC+AGG - chr5_1:16075214-16075233 None:intergenic 55.0%
CTGGTGAGAGGACAAGCTCT+TGG + chr5_1:16075212-16075231 Msa0720130:CDS 55.0%
TTGGGTGGGCAGAGGGAAAT+GGG - chr5_1:16075407-16075426 None:intergenic 55.0%
TTTGGGTGGGCAGAGGGAAA+TGG - chr5_1:16075408-16075427 None:intergenic 55.0%
GAAGGGAATCGGTGAGAGCG+AGG - chr5_1:16071482-16071501 None:intergenic 60.0%
GCGGAGATGAAGCGGAGAGA+AGG - chr5_1:16071500-16071519 None:intergenic 60.0%
ATCAGCGTCTCCGATGTCGC+CGG - chr5_1:16071525-16071544 None:intergenic 60.0%
GCCGGGAGTTATAGCGATGC+TGG + chr5_1:16071686-16071705 Msa0720130:CDS 60.0%
GGAGCTTCGGTAGCAGAAGC+CGG - chr5_1:16071722-16071741 None:intergenic 60.0%
GGCTTCTGCTACCGAAGCTC+CGG + chr5_1:16071721-16071740 Msa0720130:CDS 60.0%
TTCTGCTACCGAAGCTCCGG+TGG + chr5_1:16071724-16071743 Msa0720130:CDS 60.0%
TCCTTCCTCCACCGGAGCTT+CGG - chr5_1:16071735-16071754 None:intergenic 60.0%
AAGCTCCGGTGGAGGAAGGA+GGG + chr5_1:16071735-16071754 Msa0720130:CDS 60.0%
GCTTGGGTTTCGAGCTGGGT+CGG + chr5_1:16071814-16071833 Msa0720130:CDS 60.0%
TGCTAACCCTACTCCGGCTC+CGG + chr5_1:16071880-16071899 Msa0720130:CDS 60.0%
CACAAGCACGGATACCGGAC+AGG + chr5_1:16072178-16072197 Msa0720130:intron 60.0%
CAGCACCCACGCCTTCAATG+TGG + chr5_1:16072282-16072301 Msa0720130:intron 60.0%
AGGACTTGTGGGCCTGATCC+AGG + chr5_1:16073937-16073956 Msa0720130:intron 60.0%
GCCTGATCCAGGCTTCCATG+TGG + chr5_1:16073948-16073967 Msa0720130:intron 60.0%
CTGGTAGGAGCCATAGGCTC+TGG + chr5_1:16074174-16074193 Msa0720130:intron 60.0%
GAGATTGTTGCAGAGGCCCC+AGG - chr5_1:16075117-16075136 None:intergenic 60.0%
GGGGACTCCCTTCTCTTGCA+AGG - chr5_1:16075300-16075319 None:intergenic 60.0%
TGGGTGGGCAGAGGGAAATG+GGG - chr5_1:16075406-16075425 None:intergenic 60.0%
CTCCGCTTCATCTCCGCCAC+CGG + chr5_1:16071503-16071522 Msa0720130:CDS 65.0%
ATCTCCGCCACCGGCGACAT+CGG + chr5_1:16071512-16071531 Msa0720130:CDS 65.0%
TGCTACCGAAGCTCCGGTGG+AGG + chr5_1:16071727-16071746 Msa0720130:CDS 65.0%
ACCGAAGCTCCGGTGGAGGA+AGG + chr5_1:16071731-16071750 Msa0720130:CDS 65.0%
GAAGCTCCGGTGGAGGAAGG+AGG + chr5_1:16071734-16071753 Msa0720130:CDS 65.0%
TGGGTTTCGAGCTGGGTCGG+AGG + chr5_1:16071817-16071836 Msa0720130:CDS 65.0%
TGGGTCGGAGGTTCGAGCTG+AGG + chr5_1:16071829-16071848 Msa0720130:CDS 65.0%
CCTCAACCGGAGCCGGAGTA+GGG - chr5_1:16071889-16071908 None:intergenic 65.0%
TCCTCAACCGGAGCCGGAGT+AGG - chr5_1:16071890-16071909 None:intergenic 65.0%
TCCGGCTCCGGTTGAGGAAC+CGG + chr5_1:16071892-16071911 Msa0720130:CDS 65.0%
TCCGGTTCCTCAACCGGAGC+CGG - chr5_1:16071896-16071915 None:intergenic 65.0%
GTGGGCAGAGGGAAATGGGG+TGG - chr5_1:16075403-16075422 None:intergenic 65.0%
!! CGCCGGTGGCGGAGATGAAG+CGG - chr5_1:16071508-16071527 None:intergenic 70.0%
GTCTCCGATGTCGCCGGTGG+CGG - chr5_1:16071519-16071538 None:intergenic 70.0%
AGCGTCTCCGATGTCGCCGG+TGG - chr5_1:16071522-16071541 None:intergenic 70.0%
CCCTACTCCGGCTCCGGTTG+AGG + chr5_1:16071886-16071905 Msa0720130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 16071277 16075629 16071277 ID=Msa0720130;Name=Msa0720130
chr5_1 mRNA 16071277 16075629 16071277 ID=Msa0720130-mRNA-1;Parent=Msa0720130;Name=Msa0720130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=103|1|1|1|0.5|1|3|299|355
chr5_1 exon 16071277 16071942 16071277 ID=Msa0720130-mRNA-1:exon:6139;Parent=Msa0720130-mRNA-1
chr5_1 exon 16072813 16073008 16072813 ID=Msa0720130-mRNA-1:exon:6140;Parent=Msa0720130-mRNA-1
chr5_1 exon 16075022 16075629 16075022 ID=Msa0720130-mRNA-1:exon:6141;Parent=Msa0720130-mRNA-1
chr5_1 five_prime_UTR 16071277 16071379 16071277 ID=Msa0720130-mRNA-1:five_prime_utr;Parent=Msa0720130-mRNA-1
chr5_1 CDS 16071380 16071942 16071380 ID=Msa0720130-mRNA-1:cds;Parent=Msa0720130-mRNA-1
chr5_1 CDS 16072813 16073008 16072813 ID=Msa0720130-mRNA-1:cds;Parent=Msa0720130-mRNA-1
chr5_1 CDS 16075022 16075330 16075022 ID=Msa0720130-mRNA-1:cds;Parent=Msa0720130-mRNA-1
chr5_1 three_prime_UTR 16075331 16075629 16075331 ID=Msa0720130-mRNA-1:three_prime_utr;Parent=Msa0720130-mRNA-1
Gene Sequence

>Msa0720130

ATGTCTCTTCTCTCTTCCACACTACGTGTTCCTCTCATCTTCTCTCAAAACCCTAAACCTTCTTCTCTCTCTTCTCTCCCCTCTCGAATCTCTCTCTCTCCTCGCTCTCACCGATTCCCTTCTCTCCGCTTCATCTCCGCCACCGGCGACATCGGAGACGCTGATATACCATCCACCGATATCTCCGATGAATGGGGTGAGAAATCCGAACCCGTACCCGAAGCCAAACCATCTTTATCCTCCAAGGTTTCAGGTTCGGTTCCTTCGAAGAACGAGGATGAATGGGGAGAAGGAGCGAAAAATGACGCCGGGAGTTATAGCGATGCTGGAAATGGAACTCCGGCTTCTGCTACCGAAGCTCCGGTGGAGGAAGGAGGGAATGATGAGCTTGAGGGGTTGAAACGTGCTCTTGTTGATACGGTTTATGGGACTGAGCTTGGGTTTCGAGCTGGGTCGGAGGTTCGAGCTGAGGTGTCTGAGTTCGTGGCTAAGTTGGAAGCTGCTAACCCTACTCCGGCTCCGGTTGAGGAACCGGAGCTTCTTAATGGAAATTGGGTGTTGCTGTACACAGCATCTTCTGAACTGTTGCCTCTTCTAGCAGCAGGAGCATTACCTTTGGTGAAGGTGGATAAAATCTTGCAAACAATTGATACCTATAGCTCCACTGTTGTGAACTCTGTGACATTGTCTAGCCCTTTTGCCTCATCATCTTTCAGTGCATCTGCCTCATTTGAAGTTCGAAGCCCTGCAAGAATACAGGTTACATTCAAAGAAGGATCACTACAGCCTCCAGAGATAAAGTCTAAAATTGACCTACCAGAAAACATAAACATTTTTGGCCAAAATCTTAGCCTGGGGCCTCTGCAACAATCTCTCGGTCCTCTGGAGAATGTGGTTGCAAGTATATCACGTGTCATTTCAGGTCAGTCACCTCTTAAGATTCCCATACCTGGTGAGAGGACAAGCTCTTGGCTTCTTACCACATATCTTGACAAGGACTTGCGAATATCAAGGGGAGATGGCGGGCTGTTTGTCCTTGCAAGAGAAGGGAGTCCCCTTCTTGATTAG

Protein sequence

>Msa0720130

MSLLSSTLRVPLIFSQNPKPSSLSSLPSRISLSPRSHRFPSLRFISATGDIGDADIPSTDISDEWGEKSEPVPEAKPSLSSKVSGSVPSKNEDEWGEGAKNDAGSYSDAGNGTPASATEAPVEEGGNDELEGLKRALVDTVYGTELGFRAGSEVRAEVSEFVAKLEAANPTPAPVEEPELLNGNWVLLYTASSELLPLLAAGALPLVKVDKILQTIDTYSSTVVNSVTLSSPFASSSFSASASFEVRSPARIQVTFKEGSLQPPEIKSKIDLPENINIFGQNLSLGPLQQSLGPLENVVASISRVISGQSPLKIPIPGERTSSWLLTTYLDKDLRISRGDGGLFVLAREGSPLLD*