AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756670 MtrunA17_Chr5g0401881 99.554 224 1 0 1 224 1 224 2.88e-166 457
Msa0756670 MtrunA17_Chr4g0044531 66.146 192 55 2 31 222 38 219 2.38e-87 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756670 AT4G36910.1 75.281 178 44 0 47 224 59 236 3.09e-98 286
Msa0756670 AT4G34120.1 68.750 192 57 1 30 221 47 235 3.11e-93 273

Find 74 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTAGAAGTAAAATTT+TGG 0.185158 5_2:-11099150 Msa0756670:three_prime_UTR
TTAGCTCTGGACTCCATTTC+AGG 0.205192 5_2:-11101148 Msa0756670:intron
TTCTAGTTGAATTGCGATTA+TGG 0.229127 5_2:+11103918 None:intergenic
AATCCTATCATGCTTTCTTT+TGG 0.275870 5_2:+11099246 None:intergenic
TTAAATCAATTTACCTGAAA+TGG 0.278931 5_2:+11101135 None:intergenic
CTTGTTGAGCACAGAATAAC+TGG 0.293494 5_2:-11101966 Msa0756670:CDS
ATTCAACTAGAAAGCTATTA+TGG 0.296576 5_2:-11103907 Msa0756670:exon
GAAATCAAACAACAAATCTT+TGG 0.298554 5_2:+11099211 None:intergenic
TTCCAGATGTTGACAGTACT+TGG 0.329390 5_2:-11100913 Msa0756670:CDS
TTCCCGTGATTGATGATAAC+TGG 0.341524 5_2:-11101941 Msa0756670:CDS
GCGGCGCGTGGATTGAAAAT+AGG 0.355718 5_2:+11103837 None:intergenic
TCCGAATGTTCACATTGATA+AGG 0.418921 5_2:-11099067 Msa0756670:three_prime_UTR
ACCTTCATCCACAGTTGTTG+TGG 0.421202 5_2:+11102119 None:intergenic
CAGCCAAAAGAAAGCATGAT+AGG 0.423036 5_2:-11099249 Msa0756670:exon
CCTTCATCCACAGTTGTTGT+GGG 0.439907 5_2:+11102120 None:intergenic
AATAGGACGGGGAGTGGCGG+AGG 0.446615 5_2:+11103854 None:intergenic
TCCTTATCAATGTGAACATT+CGG 0.451797 5_2:+11099066 None:intergenic
TTCCAAGTACTGTCAACATC+TGG 0.453394 5_2:+11100911 None:intergenic
AGATTACGACCTGTTAGCTC+TGG 0.456324 5_2:-11101161 Msa0756670:CDS
ATTGATGACCACTGCTCCTA+TGG 0.465013 5_2:-11099694 Msa0756670:CDS
CTACCCTCAGCATCTACAAC+TGG 0.468514 5_2:+11099422 None:intergenic
AAATGGAGTCCAGAGCTAAC+AGG 0.469784 5_2:+11101152 None:intergenic
TGTAGATGCTGAGGGTAGAT+TGG 0.480195 5_2:-11099417 Msa0756670:intron
CAAAGGAAGAAGAAATTGAA+GGG 0.482298 5_2:+11103950 None:intergenic
TCTCACCGCTAATTCCGTTC+CGG 0.495796 5_2:-11103739 Msa0756670:intron
TAATCATGTTCCACGGGCTA+AGG 0.497927 5_2:-11098993 Msa0756670:three_prime_UTR
CCTAGCAGCATCCTCAAGAT+TGG 0.497947 5_2:+11099656 None:intergenic
GATTGCTGAGTAAGACCAAC+GGG 0.500361 5_2:-11099731 Msa0756670:CDS
CGGAAAGCGACGGCGGCGCG+TGG 0.521919 5_2:+11103825 None:intergenic
ACATACCGGAACGGAATTAG+CGG 0.526014 5_2:+11103734 None:intergenic
GAGTGGCGGAGGAGAGTGTA+GGG 0.527712 5_2:+11103865 None:intergenic
GTTGTATTAATCATGTTCCA+CGG 0.528897 5_2:-11099000 Msa0756670:three_prime_UTR
ACAAAGGAAGAAGAAATTGA+AGG 0.531134 5_2:+11103949 None:intergenic
ATTGAAAATAGGACGGGGAG+TGG 0.534343 5_2:+11103848 None:intergenic
GGAGTGGCGGAGGAGAGTGT+AGG 0.542338 5_2:+11103864 None:intergenic
TTGTATTAATCATGTTCCAC+GGG 0.546451 5_2:-11098999 Msa0756670:three_prime_UTR
GCGTGGATTGAAAATAGGAC+GGG 0.546985 5_2:+11103842 None:intergenic
GCGGAGGAGAGTGTAGGGAA+AGG 0.547075 5_2:+11103870 None:intergenic
GTGGTCTCGCGAACAACCAT+AGG 0.552213 5_2:+11099678 None:intergenic
AGCAGCATCCTCAAGATTGG+TGG 0.555993 5_2:+11099659 None:intergenic
CTTCCAGTTATCATCAATCA+CGG 0.558201 5_2:+11101938 None:intergenic
AAGACCAACGGGAAGGTGAT+CGG 0.559075 5_2:-11099720 Msa0756670:CDS
CGCGTGGATTGAAAATAGGA+CGG 0.574964 5_2:+11103841 None:intergenic
TCGCGAGACCACCAATCTTG+AGG 0.577555 5_2:-11099667 Msa0756670:CDS
TTCACCGATCACCTTCCCGT+TGG 0.578952 5_2:+11099716 None:intergenic
CCCACAACAACTGTGGATGA+AGG 0.580234 5_2:-11102120 Msa0756670:intron
GAAAATAGGACGGGGAGTGG+CGG 0.582724 5_2:+11103851 None:intergenic
CCTTCCAGTTGTAGATGCTG+AGG 0.595431 5_2:-11099426 Msa0756670:CDS
CCAATCTTGAGGATGCTGCT+AGG 0.597922 5_2:-11099656 Msa0756670:intron
TTCCAGTTATCATCAATCAC+GGG 0.598120 5_2:+11101939 None:intergenic
CAATGCTGGTTTCAGGTCAA+GGG 0.599754 5_2:-11100955 Msa0756670:intron
CACATTGATAAGGACCACCT+TGG 0.607291 5_2:-11099057 Msa0756670:three_prime_UTR
TCTTTGTCGCGGTACAACAC+AGG 0.611647 5_2:-11104079 Msa0756670:five_prime_UTR
GAGCGGAGGAGTGGAAGCAT+CGG 0.614909 5_2:+11103805 None:intergenic
CTTGAATTATCCTTAGCCCG+TGG 0.622195 5_2:+11098983 None:intergenic
CTTCCAGTTGTAGATGCTGA+GGG 0.623183 5_2:-11099425 Msa0756670:CDS
AAGGAAGAAGAAATTGAAGG+GGG 0.626210 5_2:+11103952 None:intergenic
CTTTGTCATAAAGTCACCGA+CGG 0.632801 5_2:+11102167 None:intergenic
TCTGTTGTTTGTCTTTGTCG+CGG 0.635623 5_2:-11104090 Msa0756670:five_prime_UTR
AAAGGAAGAAGAAATTGAAG+GGG 0.639177 5_2:+11103951 None:intergenic
GTGGAAGCATCGGAAAGCGA+CGG 0.640326 5_2:+11103815 None:intergenic
CGTGGATTGAAAATAGGACG+GGG 0.642145 5_2:+11103843 None:intergenic
TCATTATCAATTTATCACCA+AGG 0.646652 5_2:+11099040 None:intergenic
CCTCAGCATCTACAACTGGA+AGG 0.651284 5_2:+11099426 None:intergenic
GAAGCATCGGAAAGCGACGG+CGG 0.655395 5_2:+11103818 None:intergenic
AGTGAAGCCCACAACAACTG+TGG 0.656134 5_2:-11102127 Msa0756670:CDS
GCGAACAACCATAGGAGCAG+TGG 0.657026 5_2:+11099686 None:intergenic
GCTGAGTAAGACCAACGGGA+AGG 0.657142 5_2:-11099727 Msa0756670:CDS
AAGGTTGGGATTATCACTAG+AGG 0.659792 5_2:-11099308 Msa0756670:CDS
ACACAGGCAAGTGGAGAGTG+AGG 0.669862 5_2:-11104063 Msa0756670:five_prime_UTR
AGATTGCTGAGTAAGACCAA+CGG 0.671463 5_2:-11099732 Msa0756670:CDS
GGTAAGAACAACTATATCTG+CGG 0.690691 5_2:-11104042 Msa0756670:five_prime_UTR
GATTATGGACCAGAAAACAA+AGG 0.694008 5_2:+11103933 None:intergenic
TTATCAATTTATCACCAAGG+TGG 0.698349 5_2:+11099043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAATACAAAATTAAAT+TGG + chr5_2:11100755-11100774 None:intergenic 10.0%
!! TTTGTATTCTTATTATTATT+TGG - chr5_2:11100762-11100781 Msa0756670:intron 10.0%
!! AATTTCAATTAAGATAACAA+GGG + chr5_2:11100125-11100144 None:intergenic 15.0%
!! AAATTTCAATTAAGATAACA+AGG + chr5_2:11100126-11100145 None:intergenic 15.0%
!!! TTTTGATTTGTTATTGATTT+AGG - chr5_2:11100334-11100353 Msa0756670:intron 15.0%
!!! AAAATTAAATTGGTTTGATT+TGG + chr5_2:11100745-11100764 None:intergenic 15.0%
!! AAATTAAAAATGCCAAAAAA+AGG + chr5_2:11102023-11102042 None:intergenic 15.0%
!!! TTGTTTTCACTATTTAATTA+AGG - chr5_2:11103465-11103484 Msa0756670:intron 15.0%
!!! TTGAATTAGAAGTAAAATTT+TGG - chr5_2:11103891-11103910 Msa0756670:CDS 15.0%
!! ATAAGAGAAAAAAAACATAC+CGG + chr5_2:11099324-11099343 None:intergenic 20.0%
!! TAGCAATTTCTTGAAAAAAT+TGG - chr5_2:11099418-11099437 Msa0756670:CDS 20.0%
!! AGCAATTTCTTGAAAAAATT+GGG - chr5_2:11099419-11099438 Msa0756670:CDS 20.0%
!! TAATTCTTTCTTCATATTAG+GGG + chr5_2:11099596-11099615 None:intergenic 20.0%
!! CTAATTCTTTCTTCATATTA+GGG + chr5_2:11099597-11099616 None:intergenic 20.0%
!! ATTTCAATTAAGATAACAAG+GGG + chr5_2:11100124-11100143 None:intergenic 20.0%
!!! TATTGAACTTTTGAGTTAAT+AGG + chr5_2:11100468-11100487 None:intergenic 20.0%
!! AATAGATATACTAGAGAAAA+TGG + chr5_2:11101147-11101166 None:intergenic 20.0%
!! ATATCTATTGATAAAACTTG+TGG - chr5_2:11101158-11101177 Msa0756670:CDS 20.0%
!!! TATTTAAGACAAACTGAATA+TGG + chr5_2:11101207-11101226 None:intergenic 20.0%
!! ACAATAAAGGAATGAATTAA+AGG + chr5_2:11101364-11101383 None:intergenic 20.0%
!! TTAAATCAATTTACCTGAAA+TGG + chr5_2:11101909-11101928 None:intergenic 20.0%
!!! TTGAAATTATGCTACTTTTT+TGG - chr5_2:11102581-11102600 Msa0756670:intron 20.0%
!!! GATAGTTTATAATTTGTCTT+GGG + chr5_2:11102885-11102904 None:intergenic 20.0%
!!! AGATAGTTTATAATTTGTCT+TGG + chr5_2:11102886-11102905 None:intergenic 20.0%
!! AATTATAAACTATCTATTGC+TGG - chr5_2:11102891-11102910 Msa0756670:intron 20.0%
!! AAATGTTTATGTTTCTTAGA+TGG - chr5_2:11103159-11103178 Msa0756670:intron 20.0%
!! TCTAATAATGAATTAATCCT+AGG - chr5_2:11103228-11103247 Msa0756670:intron 20.0%
!! TGATGAAAAATATTCAACAA+AGG + chr5_2:11103567-11103586 None:intergenic 20.0%
! ATTCAACTAGAAAGCTATTA+TGG - chr5_2:11099134-11099153 Msa0756670:three_prime_UTR 25.0%
! TTTATTCTATTGTGCCAAAA+TGG - chr5_2:11099485-11099504 Msa0756670:intron 25.0%
! CCTAATTCTTTCTTCATATT+AGG + chr5_2:11099598-11099617 None:intergenic 25.0%
! CCTAATATGAAGAAAGAATT+AGG - chr5_2:11099595-11099614 Msa0756670:intron 25.0%
! GTAATGTTTGGTAAAATAAG+CGG - chr5_2:11099792-11099811 Msa0756670:intron 25.0%
! GGTTGAACTAACTTATAAAT+AGG - chr5_2:11099813-11099832 Msa0756670:intron 25.0%
! GGTAAAGTTGAGATAAATAA+TGG - chr5_2:11099893-11099912 Msa0756670:intron 25.0%
!! TTTTGTATCACACTACTATT+AGG - chr5_2:11100400-11100419 Msa0756670:intron 25.0%
!!! CTTTTGAGTTAATAGGTAAA+AGG + chr5_2:11100461-11100480 None:intergenic 25.0%
!! AAAGTTCAATATTTAGCCTT+AGG - chr5_2:11100477-11100496 Msa0756670:intron 25.0%
!!! AAGTTCAATATTTAGCCTTA+GGG - chr5_2:11100478-11100497 Msa0756670:intron 25.0%
! ATATACTAGAGAAAATGGAT+AGG + chr5_2:11101142-11101161 None:intergenic 25.0%
!! ATATTTGTTGAACTGATTAG+TGG + chr5_2:11101659-11101678 None:intergenic 25.0%
! GTTCAACAAATATAGTTTAG+AGG - chr5_2:11101666-11101685 Msa0756670:intron 25.0%
!! TCTTATCTGTTTTCATTTGT+TGG - chr5_2:11101936-11101955 Msa0756670:CDS 25.0%
! AAAATGCTGTAAATTTCTGA+AGG + chr5_2:11101979-11101998 None:intergenic 25.0%
!!! ATTTGTTTCTATTCCAAAGT+TGG - chr5_2:11102039-11102058 Msa0756670:intron 25.0%
! TATTGTGTTACAATACTTTC+TGG - chr5_2:11102199-11102218 Msa0756670:intron 25.0%
! ATATGTATTGTTAGTGTACT+AGG + chr5_2:11102328-11102347 None:intergenic 25.0%
! TACACTAACAATACATATCT+TGG - chr5_2:11102330-11102349 Msa0756670:intron 25.0%
!!! TATGCTACTTTTTTGGTAAA+AGG - chr5_2:11102588-11102607 Msa0756670:intron 25.0%
!! TAAAAGGAATTTTACTGCAA+AGG - chr5_2:11102604-11102623 Msa0756670:intron 25.0%
!! AAAAGGAATTTTACTGCAAA+GGG - chr5_2:11102605-11102624 Msa0756670:intron 25.0%
! GAAGGAACATAGTATATATT+TGG + chr5_2:11102644-11102663 None:intergenic 25.0%
! CAAATTAATCATGGTAAATG+AGG + chr5_2:11102948-11102967 None:intergenic 25.0%
! CTCATTTACCATGATTAATT+TGG - chr5_2:11102946-11102965 Msa0756670:intron 25.0%
! AGATTGTTCCAAATTAATCA+TGG + chr5_2:11102957-11102976 None:intergenic 25.0%
!! ACATGTTTCTATGATATGTT+TGG + chr5_2:11103112-11103131 None:intergenic 25.0%
! ACAAACATGAAAACAATGAA+AGG + chr5_2:11103685-11103704 None:intergenic 25.0%
!! CATTGTTTTCATGTTTGTAA+AGG - chr5_2:11103687-11103706 Msa0756670:intron 25.0%
!!! TGTTTTTATGTGATACATGA+AGG - chr5_2:11103714-11103733 Msa0756670:intron 25.0%
! GAAATCAAACAACAAATCTT+TGG + chr5_2:11103833-11103852 None:intergenic 25.0%
!!! TAGAAGTAAAATTTTGGCTT+AGG - chr5_2:11103897-11103916 Msa0756670:exon 25.0%
! TCATTATCAATTTATCACCA+AGG + chr5_2:11104004-11104023 None:intergenic 25.0%
AAAGGAAGAAGAAATTGAAG+GGG + chr5_2:11099093-11099112 None:intergenic 30.0%
CAAAGGAAGAAGAAATTGAA+GGG + chr5_2:11099094-11099113 None:intergenic 30.0%
ACAAAGGAAGAAGAAATTGA+AGG + chr5_2:11099095-11099114 None:intergenic 30.0%
!!! TTTCTTCTTCCTTTGTTTTC+TGG - chr5_2:11099099-11099118 Msa0756670:three_prime_UTR 30.0%
! TTCTAGTTGAATTGCGATTA+TGG + chr5_2:11099126-11099145 None:intergenic 30.0%
AGAAAAAAAACATACCGGAA+CGG + chr5_2:11099319-11099338 None:intergenic 30.0%
CTTATCCTCACGTATAAATT+TGG - chr5_2:11099339-11099358 Msa0756670:intron 30.0%
!! ATTTGGTGTAGTTGATAACT+TGG - chr5_2:11099356-11099375 Msa0756670:intron 30.0%
!! TTTGGTGTAGTTGATAACTT+GGG - chr5_2:11099357-11099376 Msa0756670:intron 30.0%
AAGACATCTGCTATAAACTA+GGG + chr5_2:11099664-11099683 None:intergenic 30.0%
TAAGACATCTGCTATAAACT+AGG + chr5_2:11099665-11099684 None:intergenic 30.0%
CGGATAAATAAACTAACTGA+TGG - chr5_2:11099760-11099779 Msa0756670:intron 30.0%
! TGGAGTATCTTTGTAATGTT+TGG - chr5_2:11099780-11099799 Msa0756670:intron 30.0%
!! ACATCTCAAAAAGCACTATA+GGG + chr5_2:11100054-11100073 None:intergenic 30.0%
!! AACATCTCAAAAAGCACTAT+AGG + chr5_2:11100055-11100074 None:intergenic 30.0%
GTTAGATAAAAAGTAGCAGA+TGG + chr5_2:11100227-11100246 None:intergenic 30.0%
!!! GCTACTTTTTATCTAACTGT+TGG - chr5_2:11100230-11100249 Msa0756670:intron 30.0%
CCTGTAAATAGAGATTAGTA+CGG - chr5_2:11100373-11100392 Msa0756670:intron 30.0%
GGTAAAAGGAAGATAATAAG+AGG + chr5_2:11100447-11100466 None:intergenic 30.0%
! AAACACATACTTAGTCTTTG+AGG - chr5_2:11100637-11100656 Msa0756670:intron 30.0%
ACACATGTTATGTCAAACTA+GGG + chr5_2:11100818-11100837 None:intergenic 30.0%
AACACATGTTATGTCAAACT+AGG + chr5_2:11100819-11100838 None:intergenic 30.0%
ATAATGTGCAGCCAAAAAAT+GGG - chr5_2:11100844-11100863 Msa0756670:intron 30.0%
! AATCTTTTCTTCCCTTCTTT+TGG - chr5_2:11100980-11100999 Msa0756670:intron 30.0%
! ATCTTTTCTTCCCTTCTTTT+GGG - chr5_2:11100981-11101000 Msa0756670:intron 30.0%
AAACTAACTACCCAAAAGAA+GGG + chr5_2:11100994-11101013 None:intergenic 30.0%
AAAACTAACTACCCAAAAGA+AGG + chr5_2:11100995-11101014 None:intergenic 30.0%
!! TTCTTTTGGGTAGTTAGTTT+TGG - chr5_2:11100994-11101013 Msa0756670:intron 30.0%
!!! CATTTATTTTGCAACAGCTT+TGG - chr5_2:11101047-11101066 Msa0756670:intron 30.0%
ATGGAAAGAGCAATGATATA+TGG + chr5_2:11101188-11101207 None:intergenic 30.0%
GTAGTTAAACAATGTTGTGA+TGG - chr5_2:11101294-11101313 Msa0756670:intron 30.0%
TTAAACAATGTTGTGATGGT+GGG - chr5_2:11101298-11101317 Msa0756670:intron 30.0%
TTCTTACTCAAATCAGAGTT+AGG + chr5_2:11101444-11101463 None:intergenic 30.0%
!!! TTTCTGTTTTTTCACGTTGT+CGG + chr5_2:11101484-11101503 None:intergenic 30.0%
AAAACATACAGTATGCATAG+AGG + chr5_2:11101571-11101590 None:intergenic 30.0%
AAATCGTCAGATTCAATTGT+GGG + chr5_2:11101704-11101723 None:intergenic 30.0%
AAAATCGTCAGATTCAATTG+TGG + chr5_2:11101705-11101724 None:intergenic 30.0%
!! GTCATGAGAATTATTTCTGA+AGG - chr5_2:11101826-11101845 Msa0756670:intron 30.0%
! TTACAGCATTTTCATTTCAG+AGG - chr5_2:11101987-11102006 Msa0756670:intron 30.0%
!!! GGATACTATGAACCTTTTTT+TGG - chr5_2:11102008-11102027 Msa0756670:intron 30.0%
!! CAGCATTGCACATTTTATTT+CGG + chr5_2:11102074-11102093 None:intergenic 30.0%
TCCATTGCATATTTACGTTA+AGG - chr5_2:11102224-11102243 Msa0756670:intron 30.0%
TCCTTAACGTAAATATGCAA+TGG + chr5_2:11102228-11102247 None:intergenic 30.0%
GTATTAACAACACAAAGTTC+TGG + chr5_2:11102252-11102271 None:intergenic 30.0%
ACTTATTATTACCCAACAAG+AGG - chr5_2:11102270-11102289 Msa0756670:intron 30.0%
CTGCAAAATTTCCTATAGTT+GGG + chr5_2:11102370-11102389 None:intergenic 30.0%
ACTGCAAAATTTCCTATAGT+TGG + chr5_2:11102371-11102390 None:intergenic 30.0%
!! TTACGCATTTTAGAAGTAGA+AGG - chr5_2:11102492-11102511 Msa0756670:intron 30.0%
!! GTTGCTTACAAGTTTTATGA+AGG + chr5_2:11102662-11102681 None:intergenic 30.0%
AAACCCACTCTTCAATAATA+TGG - chr5_2:11102978-11102997 Msa0756670:intron 30.0%
AACCCACTCTTCAATAATAT+GGG - chr5_2:11102979-11102998 Msa0756670:intron 30.0%
AACGTAAACATTACCATCTA+TGG + chr5_2:11103038-11103057 None:intergenic 30.0%
GAATTAATCCTAGGTCTTAA+AGG - chr5_2:11103237-11103256 Msa0756670:intron 30.0%
TTCAAAATGAACAGACACAA+AGG + chr5_2:11103426-11103445 None:intergenic 30.0%
ATGACACGCATAAAATTCAA+CGG + chr5_2:11103511-11103530 None:intergenic 30.0%
! ATTTTTCATCAGATTGTTGC+TGG - chr5_2:11103576-11103595 Msa0756670:intron 30.0%
TTTATGTGATACATGAAGGT+TGG - chr5_2:11103718-11103737 Msa0756670:intron 30.0%
TTATGTGATACATGAAGGTT+GGG - chr5_2:11103719-11103738 Msa0756670:intron 30.0%
! AATCCTATCATGCTTTCTTT+TGG + chr5_2:11103798-11103817 None:intergenic 30.0%
TCCTTATCAATGTGAACATT+CGG + chr5_2:11103978-11103997 None:intergenic 30.0%
TTATCAATTTATCACCAAGG+TGG + chr5_2:11104001-11104020 None:intergenic 30.0%
GTTGTATTAATCATGTTCCA+CGG - chr5_2:11104041-11104060 Msa0756670:five_prime_UTR 30.0%
TTGTATTAATCATGTTCCAC+GGG - chr5_2:11104042-11104061 Msa0756670:five_prime_UTR 30.0%
GGTAAGAACAACTATATCTG+CGG - chr5_2:11098999-11099018 Msa0756670:three_prime_UTR 35.0%
AAGGAAGAAGAAATTGAAGG+GGG + chr5_2:11099092-11099111 None:intergenic 35.0%
GATTATGGACCAGAAAACAA+AGG + chr5_2:11099111-11099130 None:intergenic 35.0%
!! ACGAAGCTTTGAAAAATGAG+CGG + chr5_2:11099256-11099275 None:intergenic 35.0%
CTACACCAAATTTATACGTG+AGG + chr5_2:11099347-11099366 None:intergenic 35.0%
!! TAGTTGATAACTTGGGAGTT+AGG - chr5_2:11099364-11099383 Msa0756670:intron 35.0%
!! GTGAAGCATTTCAACCATTT+TGG + chr5_2:11099502-11099521 None:intergenic 35.0%
AGACATCTGCTATAAACTAG+GGG + chr5_2:11099663-11099682 None:intergenic 35.0%
GCTGATAAGTTAGATGATAG+CGG - chr5_2:11099740-11099759 Msa0756670:CDS 35.0%
AAAATTGCTATAAGCTCGTG+AGG - chr5_2:11099940-11099959 Msa0756670:intron 35.0%
TACAGTATCTCTTGACTCTT+AGG - chr5_2:11100285-11100304 Msa0756670:intron 35.0%
CCGTACTAATCTCTATTTAC+AGG + chr5_2:11100376-11100395 None:intergenic 35.0%
AGGCCATCATCAATAATACT+CGG - chr5_2:11100420-11100439 Msa0756670:intron 35.0%
TAAGTATGTGTTTGTGCAAG+CGG + chr5_2:11100630-11100649 None:intergenic 35.0%
!! TATCCGACTGTTTCTAATAG+AGG - chr5_2:11100696-11100715 Msa0756670:intron 35.0%
CTTCCTCTATTAGAAACAGT+CGG + chr5_2:11100702-11100721 None:intergenic 35.0%
CATAATGTGCAGCCAAAAAA+TGG - chr5_2:11100843-11100862 Msa0756670:intron 35.0%
TAATGTGCAGCCAAAAAATG+GGG - chr5_2:11100845-11100864 Msa0756670:intron 35.0%
! ACCTTGTTGAAGTCTCATTT+TGG - chr5_2:11100954-11100973 Msa0756670:intron 35.0%
! CCTTGTTGAAGTCTCATTTT+GGG - chr5_2:11100955-11100974 Msa0756670:intron 35.0%
!!! TTTTGGGTAGTTAGTTTTGG+TGG - chr5_2:11100997-11101016 Msa0756670:intron 35.0%
TTCCAGTTATCATCAATCAC+GGG + chr5_2:11101105-11101124 None:intergenic 35.0%
CTTCCAGTTATCATCAATCA+CGG + chr5_2:11101106-11101125 None:intergenic 35.0%
GTTAAACAATGTTGTGATGG+TGG - chr5_2:11101297-11101316 Msa0756670:intron 35.0%
AAGACACCTGCTATATTATG+CGG - chr5_2:11101385-11101404 Msa0756670:intron 35.0%
!!! CGGCTTTGGATTTTTAACAA+AGG - chr5_2:11101405-11101424 Msa0756670:intron 35.0%
!! ACGTTGTCGGTTTCTTAAAA+CGG + chr5_2:11101471-11101490 None:intergenic 35.0%
TTTAACAGAATCTTAGCCAG+CGG + chr5_2:11101524-11101543 None:intergenic 35.0%
CGAGCTATACTTTCATTTAG+AGG - chr5_2:11101629-11101648 Msa0756670:intron 35.0%
GCATTTGTGAAGACATTCAA+AGG + chr5_2:11101730-11101749 None:intergenic 35.0%
GAAGGTTGTTTATGCTTTGT+AGG - chr5_2:11101844-11101863 Msa0756670:intron 35.0%
GTTGTTTATGCTTTGTAGGT+TGG - chr5_2:11101848-11101867 Msa0756670:intron 35.0%
! ATGCTGTAAATTTCTGAAGG+TGG + chr5_2:11101976-11101995 None:intergenic 35.0%
CGAAATAAAATGTGCAATGC+TGG - chr5_2:11102072-11102091 Msa0756670:intron 35.0%
TCAGTAAAACTCCTCTTGTT+GGG + chr5_2:11102284-11102303 None:intergenic 35.0%
! GTTTTACTGAGCTGATGTTT+TGG - chr5_2:11102294-11102313 Msa0756670:intron 35.0%
AGTGGTAACTATTGTGAAAG+AGG + chr5_2:11102544-11102563 None:intergenic 35.0%
CTTTCACAATAGTTACCACT+TGG - chr5_2:11102544-11102563 Msa0756670:intron 35.0%
AACTTGTAAGCAACTTCTCA+AGG - chr5_2:11102668-11102687 Msa0756670:intron 35.0%
AGCCATATCTTATCCAATGT+GGG + chr5_2:11102734-11102753 None:intergenic 35.0%
AAGCCATATCTTATCCAATG+TGG + chr5_2:11102735-11102754 None:intergenic 35.0%
AGAATATGTTCACAAGTCGT+GGG - chr5_2:11102756-11102775 Msa0756670:intron 35.0%
GAAAACCTCACCTTACAAAT+CGG - chr5_2:11102778-11102797 Msa0756670:intron 35.0%
!! ACCTTACAAATCGGTTTGTA+GGG - chr5_2:11102787-11102806 Msa0756670:intron 35.0%
AAACTATCTATTGCTGGTGT+AGG - chr5_2:11102897-11102916 Msa0756670:intron 35.0%
CACCCATATTATTGAAGAGT+GGG + chr5_2:11102984-11103003 None:intergenic 35.0%
TTAATTGCATGCTCCATAGA+TGG - chr5_2:11103022-11103041 Msa0756670:intron 35.0%
TCATAGAAACATGTTCAGCA+CGG - chr5_2:11103118-11103137 Msa0756670:intron 35.0%
TTAATCCTAGGTCTTAAAGG+TGG - chr5_2:11103240-11103259 Msa0756670:intron 35.0%
ATGAACAGACACAAAGGAAA+AGG + chr5_2:11103420-11103439 None:intergenic 35.0%
GCATAAAATTCAACGGTTTG+AGG + chr5_2:11103504-11103523 None:intergenic 35.0%
CCAAAGATAACAGAAGAAAG+GGG + chr5_2:11103657-11103676 None:intergenic 35.0%
CCCAAAGATAACAGAAGAAA+GGG + chr5_2:11103658-11103677 None:intergenic 35.0%
CCCTTTCTTCTGTTATCTTT+GGG - chr5_2:11103655-11103674 Msa0756670:intron 35.0%
ACCCAAAGATAACAGAAGAA+AGG + chr5_2:11103659-11103678 None:intergenic 35.0%
TCCGAATGTTCACATTGATA+AGG - chr5_2:11103974-11103993 Msa0756670:five_prime_UTR 35.0%
!! AAATTGAAGGGGGTTTTGGT+GGG + chr5_2:11099082-11099101 None:intergenic 40.0%
! GAAGAAATTGAAGGGGGTTT+TGG + chr5_2:11099086-11099105 None:intergenic 40.0%
!! AAGCTTTGAAAAATGAGCGG+AGG + chr5_2:11099253-11099272 None:intergenic 40.0%
!! GCTCATTTTTCAAAGCTTCG+TGG - chr5_2:11099255-11099274 Msa0756670:CDS 40.0%
! AGAGTGTTAGCAGCAAAAAG+CGG + chr5_2:11099285-11099304 None:intergenic 40.0%
TCACTTTGCAATTCTCCCAA+AGG - chr5_2:11099518-11099537 Msa0756670:intron 40.0%
CACTTTGCAATTCTCCCAAA+GGG - chr5_2:11099519-11099538 Msa0756670:intron 40.0%
ATACAAGCTATCGTCCCTTT+GGG + chr5_2:11099536-11099555 None:intergenic 40.0%
AATACAAGCTATCGTCCCTT+TGG + chr5_2:11099537-11099556 None:intergenic 40.0%
GAATTAGGCTCTGTTTAGCA+AGG - chr5_2:11099610-11099629 Msa0756670:intron 40.0%
TCTGCTATAAACTAGGGGTT+CGG + chr5_2:11099658-11099677 None:intergenic 40.0%
GCAGTCAAAGTAGAGTTGTT+TGG - chr5_2:11099701-11099720 Msa0756670:CDS 40.0%
TCATCTAACTTATCAGCTCG+TGG + chr5_2:11099737-11099756 None:intergenic 40.0%
TTCCTCAAGCAAGATTGCAT+AGG - chr5_2:11099871-11099890 Msa0756670:intron 40.0%
TCCTCAAGCAAGATTGCATA+GGG - chr5_2:11099872-11099891 Msa0756670:intron 40.0%
ACTATAGGGTCTGTTTGGTA+AGG + chr5_2:11100040-11100059 None:intergenic 40.0%
! AAAGCACTATAGGGTCTGTT+TGG + chr5_2:11100045-11100064 None:intergenic 40.0%
GGTCCGAGTATTATTGATGA+TGG + chr5_2:11100426-11100445 None:intergenic 40.0%
!! ATTTAGCCTTAGGGTGTGTT+TGG - chr5_2:11100487-11100506 Msa0756670:intron 40.0%
!! TTTAGCCTTAGGGTGTGTTT+GGG - chr5_2:11100488-11100507 Msa0756670:intron 40.0%
! TTTGGAGCTTCTTGGAATCA+CGG + chr5_2:11100557-11100576 None:intergenic 40.0%
TGATTCCAAGAAGCTCCAAA+AGG - chr5_2:11100557-11100576 Msa0756670:intron 40.0%
! TTTGAGGAGAAGCTACCTTT+TGG + chr5_2:11100575-11100594 None:intergenic 40.0%
!! CGACTGTTTCTAATAGAGGA+AGG - chr5_2:11100700-11100719 Msa0756670:intron 40.0%
AGAGGAAGGTAGTTCCTATT+TGG - chr5_2:11100714-11100733 Msa0756670:intron 40.0%
GAGGAAGGTAGTTCCTATTT+GGG - chr5_2:11100715-11100734 Msa0756670:intron 40.0%
AGGAAGGTAGTTCCTATTTG+GGG - chr5_2:11100716-11100735 Msa0756670:intron 40.0%
!! TTGATTTGGCTACCCCAAAT+AGG + chr5_2:11100731-11100750 None:intergenic 40.0%
CTTTGTCATAAAGTCACCGA+CGG + chr5_2:11100877-11100896 None:intergenic 40.0%
CCCAAAATGAGACTTCAACA+AGG + chr5_2:11100958-11100977 None:intergenic 40.0%
CTTGTTGAGCACAGAATAAC+TGG - chr5_2:11101075-11101094 Msa0756670:intron 40.0%
! TTCCCGTGATTGATGATAAC+TGG - chr5_2:11101100-11101119 Msa0756670:intron 40.0%
! AGGACAGCAGATTTTGAATG+AGG + chr5_2:11101344-11101363 None:intergenic 40.0%
AGCAGGTGTCTTGACAATAA+AGG + chr5_2:11101377-11101396 None:intergenic 40.0%
TGCAGTTAGCACAATATTGC+AGG - chr5_2:11101796-11101815 Msa0756670:intron 40.0%
!! AAATGTGCAATGCTGGTTTC+AGG - chr5_2:11102079-11102098 Msa0756670:intron 40.0%
TTCCAGATGTTGACAGTACT+TGG - chr5_2:11102128-11102147 Msa0756670:CDS 40.0%
! TTCCAAGTACTGTCAACATC+TGG + chr5_2:11102133-11102152 None:intergenic 40.0%
CTCAGTAAAACTCCTCTTGT+TGG + chr5_2:11102285-11102304 None:intergenic 40.0%
TTTACCTGTGTCCCAACTAT+AGG - chr5_2:11102356-11102375 Msa0756670:intron 40.0%
ATTTCCTATAGTTGGGACAC+AGG + chr5_2:11102363-11102382 None:intergenic 40.0%
TACCACTTGGTTGCTCATTA+TGG - chr5_2:11102557-11102576 Msa0756670:intron 40.0%
AACCATAATGAGCAACCAAG+TGG + chr5_2:11102562-11102581 None:intergenic 40.0%
GTCCCACATTGGATAAGATA+TGG - chr5_2:11102729-11102748 Msa0756670:intron 40.0%
GAGAATATGTTCACAAGTCG+TGG - chr5_2:11102755-11102774 Msa0756670:intron 40.0%
!! ACAAACCGATTTGTAAGGTG+AGG + chr5_2:11102786-11102805 None:intergenic 40.0%
!! CACCTTACAAATCGGTTTGT+AGG - chr5_2:11102786-11102805 Msa0756670:intron 40.0%
!! ACCCTACAAACCGATTTGTA+AGG + chr5_2:11102791-11102810 None:intergenic 40.0%
TCATGGTAAATGAGGCAACA+CGG + chr5_2:11102940-11102959 None:intergenic 40.0%
CCACCCATATTATTGAAGAG+TGG + chr5_2:11102985-11103004 None:intergenic 40.0%
CCACTCTTCAATAATATGGG+TGG - chr5_2:11102982-11103001 Msa0756670:intron 40.0%
!! CAAATCCACCTTTAAGACCT+AGG + chr5_2:11103248-11103267 None:intergenic 40.0%
AGATTGCTGAGTAAGACCAA+CGG - chr5_2:11103309-11103328 Msa0756670:intron 40.0%
CCCCTTTCTTCTGTTATCTT+TGG - chr5_2:11103654-11103673 Msa0756670:intron 40.0%
AAGGTTGGGATTATCACTAG+AGG - chr5_2:11103733-11103752 Msa0756670:intron 40.0%
! CAGCCAAAAGAAAGCATGAT+AGG - chr5_2:11103792-11103811 Msa0756670:CDS 40.0%
!! GAAATTGAAGGGGGTTTTGG+TGG + chr5_2:11099083-11099102 None:intergenic 45.0%
ATTGAAAATAGGACGGGGAG+TGG + chr5_2:11099196-11099215 None:intergenic 45.0%
! CGTGGATTGAAAATAGGACG+GGG + chr5_2:11099201-11099220 None:intergenic 45.0%
! GCGTGGATTGAAAATAGGAC+GGG + chr5_2:11099202-11099221 None:intergenic 45.0%
! CGCGTGGATTGAAAATAGGA+CGG + chr5_2:11099203-11099222 None:intergenic 45.0%
TTGAAAAATGAGCGGAGGAG+TGG + chr5_2:11099248-11099267 None:intergenic 45.0%
AGTGTTAGCAGCAAAAAGCG+GGG + chr5_2:11099283-11099302 None:intergenic 45.0%
GAGTGTTAGCAGCAAAAAGC+GGG + chr5_2:11099284-11099303 None:intergenic 45.0%
ACATACCGGAACGGAATTAG+CGG + chr5_2:11099310-11099329 None:intergenic 45.0%
ACCCTATGCAATCTTGCTTG+AGG + chr5_2:11099876-11099895 None:intergenic 45.0%
ATAAGCTCGTGAGGAACTGA+TGG - chr5_2:11099949-11099968 Msa0756670:intron 45.0%
CAGATGGTGCATAAACTAGC+AGG + chr5_2:11100211-11100230 None:intergenic 45.0%
! TTAGGGTGTGTTTGGGATCA+CGG - chr5_2:11100495-11100514 Msa0756670:intron 45.0%
!!! AGCTACCTTTTGGAGCTTCT+TGG + chr5_2:11100565-11100584 None:intergenic 45.0%
CGGTGGGAAAATCAATTCAG+CGG + chr5_2:11100610-11100629 None:intergenic 45.0%
TATGTGTTTGTGCAAGCGGT+GGG + chr5_2:11100626-11100645 None:intergenic 45.0%
!!! ACGGTGTAGACCCCATTTTT+TGG + chr5_2:11100858-11100877 None:intergenic 45.0%
AAAAATGGGGTCTACACCGT+CGG - chr5_2:11100858-11100877 Msa0756670:intron 45.0%
CCTTCATCCACAGTTGTTGT+GGG + chr5_2:11100924-11100943 None:intergenic 45.0%
ACCTTCATCCACAGTTGTTG+TGG + chr5_2:11100925-11100944 None:intergenic 45.0%
TGAGGAAAAGTTACGCTGAG+AGG + chr5_2:11101326-11101345 None:intergenic 45.0%
CCAAAGCCGCATAATATAGC+AGG + chr5_2:11101394-11101413 None:intergenic 45.0%
CCTGCTATATTATGCGGCTT+TGG - chr5_2:11101391-11101410 Msa0756670:intron 45.0%
AAAGCTTCAGTAAATGCCGC+TGG - chr5_2:11101505-11101524 Msa0756670:intron 45.0%
CGTCAGATTCAATTGTGGGA+AGG + chr5_2:11101700-11101719 None:intergenic 45.0%
AGATTACGACCTGTTAGCTC+TGG - chr5_2:11101880-11101899 Msa0756670:intron 45.0%
AAATGGAGTCCAGAGCTAAC+AGG + chr5_2:11101892-11101911 None:intergenic 45.0%
!! TTAGCTCTGGACTCCATTTC+AGG - chr5_2:11101893-11101912 Msa0756670:intron 45.0%
TCGGCTTAGAACTCCAACTT+TGG + chr5_2:11102055-11102074 None:intergenic 45.0%
!! CAATGCTGGTTTCAGGTCAA+GGG - chr5_2:11102086-11102105 Msa0756670:intron 45.0%
!! TTGACTGAGCTTGTTGGAAG+GGG + chr5_2:11102426-11102445 None:intergenic 45.0%
!! CTTGACTGAGCTTGTTGGAA+GGG + chr5_2:11102427-11102446 None:intergenic 45.0%
!! ACTTGACTGAGCTTGTTGGA+AGG + chr5_2:11102428-11102447 None:intergenic 45.0%
AAGCACTTGACTGAGCTTGT+TGG + chr5_2:11102432-11102451 None:intergenic 45.0%
TCTGTTGAGAAGTCCCACAT+TGG - chr5_2:11102718-11102737 Msa0756670:intron 45.0%
! TCGGTTTGTAGGGTTGAGTT+AGG - chr5_2:11102797-11102816 Msa0756670:intron 45.0%
CGGTTTGTAGGGTTGAGTTA+GGG - chr5_2:11102798-11102817 Msa0756670:intron 45.0%
ATGGTAAATGAGGCAACACG+GGG + chr5_2:11102938-11102957 None:intergenic 45.0%
CATGGTAAATGAGGCAACAC+GGG + chr5_2:11102939-11102958 None:intergenic 45.0%
GATTGCTGAGTAAGACCAAC+GGG - chr5_2:11103310-11103329 Msa0756670:intron 45.0%
! ATTGATGACCACTGCTCCTA+TGG - chr5_2:11103347-11103366 Msa0756670:intron 45.0%
CTTCCAGTTGTAGATGCTGA+GGG - chr5_2:11103616-11103635 Msa0756670:intron 45.0%
TGTAGATGCTGAGGGTAGAT+TGG - chr5_2:11103624-11103643 Msa0756670:intron 45.0%
CACATTGATAAGGACCACCT+TGG - chr5_2:11103984-11104003 Msa0756670:five_prime_UTR 45.0%
! TAATCATGTTCCACGGGCTA+AGG - chr5_2:11104048-11104067 Msa0756670:five_prime_UTR 45.0%
CTTGAATTATCCTTAGCCCG+TGG + chr5_2:11104061-11104080 None:intergenic 45.0%
!! AAATATAAAATGATATAAAA+AGG + chr5_2:11100169-11100188 None:intergenic 5.0%
TCTTTGTCGCGGTACAACAC+AGG - chr5_2:11098962-11098981 Msa0756670:three_prime_UTR 50.0%
TCTCACCGCTAATTCCGTTC+CGG - chr5_2:11099302-11099321 Msa0756670:CDS 50.0%
TAGGCTCTGTTTAGCAAGGC+TGG - chr5_2:11099614-11099633 Msa0756670:intron 50.0%
GTTCGGCTTTGCTAACTAGG+GGG + chr5_2:11099641-11099660 None:intergenic 50.0%
GGTTCGGCTTTGCTAACTAG+GGG + chr5_2:11099642-11099661 None:intergenic 50.0%
GGGTTCGGCTTTGCTAACTA+GGG + chr5_2:11099643-11099662 None:intergenic 50.0%
GTGATCCCAAACACACCCTA+AGG + chr5_2:11100496-11100515 None:intergenic 50.0%
! AACACCTTTTGCGCGTTACG+AGG - chr5_2:11100522-11100541 Msa0756670:intron 50.0%
AATGCCTCGTAACGCGCAAA+AGG + chr5_2:11100529-11100548 None:intergenic 50.0%
AGGTAGCTTCTCCTCAAACG+TGG - chr5_2:11100577-11100596 Msa0756670:intron 50.0%
GCGGCAAAAAACCACGTTTG+AGG + chr5_2:11100591-11100610 None:intergenic 50.0%
GTATGTGTTTGTGCAAGCGG+TGG + chr5_2:11100627-11100646 None:intergenic 50.0%
AGTGAAGCCCACAACAACTG+TGG - chr5_2:11100914-11100933 Msa0756670:CDS 50.0%
CCCACAACAACTGTGGATGA+AGG - chr5_2:11100921-11100940 Msa0756670:CDS 50.0%
!! GCAATGCTGGTTTCAGGTCA+AGG - chr5_2:11102085-11102104 Msa0756670:intron 50.0%
!! TGACTGAGCTTGTTGGAAGG+GGG + chr5_2:11102425-11102444 None:intergenic 50.0%
GTTGAGTTAGGGCTAACCCA+AGG - chr5_2:11102809-11102828 Msa0756670:intron 50.0%
AACACACGTCCATCACGCTT+AGG + chr5_2:11102855-11102874 None:intergenic 50.0%
AAGACCAACGGGAAGGTGAT+CGG - chr5_2:11103321-11103340 Msa0756670:intron 50.0%
AGCAGCATCCTCAAGATTGG+TGG + chr5_2:11103385-11103404 None:intergenic 50.0%
CCTAGCAGCATCCTCAAGAT+TGG + chr5_2:11103388-11103407 None:intergenic 50.0%
CCAATCTTGAGGATGCTGCT+AGG - chr5_2:11103385-11103404 Msa0756670:intron 50.0%
CCTCAGCATCTACAACTGGA+AGG + chr5_2:11103618-11103637 None:intergenic 50.0%
CCTTCCAGTTGTAGATGCTG+AGG - chr5_2:11103615-11103634 Msa0756670:intron 50.0%
CTACCCTCAGCATCTACAAC+TGG + chr5_2:11103622-11103641 None:intergenic 50.0%
ACACAGGCAAGTGGAGAGTG+AGG - chr5_2:11098978-11098997 Msa0756670:three_prime_UTR 55.0%
GAAAATAGGACGGGGAGTGG+CGG + chr5_2:11099193-11099212 None:intergenic 55.0%
! GCGGCGCGTGGATTGAAAAT+AGG + chr5_2:11099207-11099226 None:intergenic 55.0%
!! GTGGAAGCATCGGAAAGCGA+CGG + chr5_2:11099229-11099248 None:intergenic 55.0%
GGGGTTCGGCTTTGCTAACT+AGG + chr5_2:11099644-11099663 None:intergenic 55.0%
GGAGCTTCTTGGAATCACGG+TGG + chr5_2:11100554-11100573 None:intergenic 55.0%
TGTTGGAAGGGGGAGGGATA+GGG + chr5_2:11102415-11102434 None:intergenic 55.0%
TTGTTGGAAGGGGGAGGGAT+AGG + chr5_2:11102416-11102435 None:intergenic 55.0%
!! TGAGCTTGTTGGAAGGGGGA+GGG + chr5_2:11102421-11102440 None:intergenic 55.0%
GACAGCTGGAGTGTGACCTT+GGG + chr5_2:11102828-11102847 None:intergenic 55.0%
CTGTCCAGTCCTAAGCGTGA+TGG - chr5_2:11102843-11102862 Msa0756670:intron 55.0%
ACGTCCATCACGCTTAGGAC+TGG + chr5_2:11102850-11102869 None:intergenic 55.0%
GTAAATGAGGCAACACGGGG+AGG + chr5_2:11102935-11102954 None:intergenic 55.0%
GCTGAGTAAGACCAACGGGA+AGG - chr5_2:11103314-11103333 Msa0756670:intron 55.0%
TTCACCGATCACCTTCCCGT+TGG + chr5_2:11103328-11103347 None:intergenic 55.0%
GCGAACAACCATAGGAGCAG+TGG + chr5_2:11103358-11103377 None:intergenic 55.0%
GTGGTCTCGCGAACAACCAT+AGG + chr5_2:11103366-11103385 None:intergenic 55.0%
TCGCGAGACCACCAATCTTG+AGG - chr5_2:11103374-11103393 Msa0756670:intron 55.0%
CGCGGTACAACACAGGCAAG+TGG - chr5_2:11098969-11098988 Msa0756670:three_prime_UTR 60.0%
! GCGGAGGAGAGTGTAGGGAA+AGG + chr5_2:11099174-11099193 None:intergenic 60.0%
! GAGTGGCGGAGGAGAGTGTA+GGG + chr5_2:11099179-11099198 None:intergenic 60.0%
!! GAAGCATCGGAAAGCGACGG+CGG + chr5_2:11099226-11099245 None:intergenic 60.0%
! GAGCGGAGGAGTGGAAGCAT+CGG + chr5_2:11099239-11099258 None:intergenic 60.0%
!! CTGAGCTTGTTGGAAGGGGG+AGG + chr5_2:11102422-11102441 None:intergenic 60.0%
GGACAGCTGGAGTGTGACCT+TGG + chr5_2:11102829-11102848 None:intergenic 60.0%
CACGCTTAGGACTGGACAGC+TGG + chr5_2:11102842-11102861 None:intergenic 60.0%
! GGAGTGGCGGAGGAGAGTGT+AGG + chr5_2:11099180-11099199 None:intergenic 65.0%
AATAGGACGGGGAGTGGCGG+AGG + chr5_2:11099190-11099209 None:intergenic 65.0%
! CGGAAAGCGACGGCGGCGCG+TGG + chr5_2:11099219-11099238 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 11098954 11104109 11098954 ID=Msa0756670;Name=Msa0756670
chr5_2 mRNA 11098954 11104109 11098954 ID=Msa0756670-mRNA-1;Parent=Msa0756670;Name=Msa0756670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=199|1|1|1|1|1|8|299|224
chr5_2 exon 11098954 11099327 11098954 ID=Msa0756670-mRNA-1:exon:4986;Parent=Msa0756670-mRNA-1
chr5_2 exon 11099418 11099475 11099418 ID=Msa0756670-mRNA-1:exon:4985;Parent=Msa0756670-mRNA-1
chr5_2 exon 11099657 11099772 11099657 ID=Msa0756670-mRNA-1:exon:4984;Parent=Msa0756670-mRNA-1
chr5_2 exon 11100910 11100962 11100910 ID=Msa0756670-mRNA-1:exon:4983;Parent=Msa0756670-mRNA-1
chr5_2 exon 11101149 11101197 11101149 ID=Msa0756670-mRNA-1:exon:4982;Parent=Msa0756670-mRNA-1
chr5_2 exon 11101935 11101999 11101935 ID=Msa0756670-mRNA-1:exon:4981;Parent=Msa0756670-mRNA-1
chr5_2 exon 11102121 11102208 11102121 ID=Msa0756670-mRNA-1:exon:4980;Parent=Msa0756670-mRNA-1
chr5_2 exon 11103740 11104109 11103740 ID=Msa0756670-mRNA-1:exon:4979;Parent=Msa0756670-mRNA-1
chr5_2 five_prime_UTR 11103911 11104109 11103911 ID=Msa0756670-mRNA-1:five_prime_utr;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11103740 11103910 11103740 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11102121 11102208 11102121 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11101935 11101999 11101935 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11101149 11101197 11101149 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11100910 11100962 11100910 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11099657 11099772 11099657 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11099418 11099475 11099418 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 CDS 11099253 11099327 11099253 ID=Msa0756670-mRNA-1:cds;Parent=Msa0756670-mRNA-1
chr5_2 three_prime_UTR 11098954 11099252 11098954 ID=Msa0756670-mRNA-1:three_prime_utr;Parent=Msa0756670-mRNA-1
Gene Sequence

>Msa0756670

ATGGACTCGCTCACTCTTCCTTTCCCTACACTCTCCTCCGCCACTCCCCGTCCTATTTTCAATCCACGCGCCGCCGTCGCTTTCCGATGCTTCCACTCCTCCGCTCATTTTTCAAAGCTTCGTGGCTCCCCGCTTTTTGCTGCTAACACTCTCACCGCTAATTCCGTTCCGCCAAAAAATGGGGTCTACACCGTCGGTGACTTTATGACAAAGAAAGATGAGTTACATACAGTGAAGCCCACAACAACTGTGGATGAAGCTTTGGATTCTCTTGTTGAGCACAGAATAACTGGTTTTCCCGTGATTGATGATAACTGGAAGCTAGTTGGTGTTGTTTCAGATTACGACCTGTTAGCTCTGGACTCCATTTCAGGTCAAGGGCAAACAGATAACAGCTTGTTTCCAGATGTTGACAGTACTTGGAAAACTTTCAATGAAGTTCAGAGATTGCTGAGTAAGACCAACGGGAAGGTGATCGGTGAATTGATGACCACTGCTCCTATGGTTGTTCGCGAGACCACCAATCTTGAGGATGCTGCTAGATTGTTGCTGGAAACAAAATTTCGACGCCTTCCAGTTGTAGATGCTGAGGGTAGATTGGTTGGGATTATCACTAGAGGAAATGTTGTAAGAGCTGCGCTTCAAATGAAACGAGACAGCCAAAAGAAAGCATGA

Protein sequence

>Msa0756670

MDSLTLPFPTLSSATPRPIFNPRAAVAFRCFHSSAHFSKLRGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFPVIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQRLLSKTNGKVIGELMTTAPMVVRETTNLEDAARLLLETKFRRLPVVDAEGRLVGIITRGNVVRAALQMKRDSQKKA*