AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127030 MtrunA17_Chr1g0185991 91.422 1294 72 3 1 1255 1 1294 0.0 2391
Msa0127030 MtrunA17_Chr1g0185981 83.397 1301 154 7 1 1252 1 1288 0.0 2157
Msa0127030 MtrunA17_Chr1g0173231 28.500 1007 661 24 7 985 3 978 1.20e-87 309
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127030 AT2G34357.1 48.678 1286 570 23 16 1250 24 1270 0.0 1097
Msa0127030 AT4G23540.1 29.004 1024 642 27 5 985 10 991 6.05e-96 333

Find 254 sgRNAs with CRISPR-Local

Find 814 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAGCTTCCAAATTTAA+TGG 0.155327 1_3:+56250765 None:intergenic
ATCCCTTATACCATTAAATT+TGG 0.179078 1_3:-56250775 Msa0127030:CDS
CTTCCAAATTTAATGGTATA+AGG 0.189743 1_3:+56250772 None:intergenic
ACCTCATCAACTGAGATTTC+TGG 0.202537 1_3:-56253204 Msa0127030:CDS
CTGCTGTTCTTCTTCGCTTC+TGG 0.206041 1_3:+56243402 None:intergenic
TGAGGTTCTGCTTGGGCTTA+TGG 0.208576 1_3:-56248678 Msa0127030:CDS
CAGATCTTTCAACAAATTAT+TGG 0.220117 1_3:+56250222 None:intergenic
ATTTATCCGTCTCAAATAAA+TGG 0.226752 1_3:-56250743 Msa0127030:CDS
TCCTCTATGTTTCACAAATT+AGG 0.227959 1_3:-56252748 Msa0127030:intron
CATATTATTCCACGAATATT+AGG 0.238036 1_3:+56250397 None:intergenic
TTTCACATTTGTTGATTCAT+AGG 0.241660 1_3:-56254600 Msa0127030:CDS
GGCCAATCTTGGTTTATTAA+AGG 0.244569 1_3:-56247008 Msa0127030:CDS
TTCTCCCTGCAGGCCAATCT+TGG 0.277069 1_3:-56247019 Msa0127030:intron
ATTATACAAGACTTGTTCTT+TGG 0.291284 1_3:+56250294 None:intergenic
GTGTATTTATTTGATGATAA+AGG 0.295011 1_3:-56243059 Msa0127030:three_prime_UTR
CAATCCTTCTGCTTGTGATT+TGG 0.298079 1_3:+56246976 None:intergenic
TGCCTCTGTGGCTGCAAGTA+TGG 0.299117 1_3:+56252951 None:intergenic
TTGGAGAGTGGTGTTGTTCA+TGG 0.303206 1_3:-56254634 Msa0127030:CDS
AGTAATAAAGCCAGCATTGC+AGG 0.304957 1_3:-56249036 Msa0127030:intron
TCGCTTCTGGCCTTTAGTTC+CGG 0.307234 1_3:+56243415 None:intergenic
ACACACTTGTTTACTCTTTG+TGG 0.311562 1_3:-56250513 Msa0127030:CDS
TGATGAAAGTTTGATTAAAC+AGG 0.311799 1_3:-56252902 Msa0127030:CDS
ATTATCACTATGCTGCTTCT+TGG 0.316544 1_3:-56252792 Msa0127030:CDS
TGTTATGTTGCCATCGAGTT+TGG 0.322470 1_3:-56254653 Msa0127030:CDS
AAATCAGCAGTGTCTTCATT+TGG 0.329028 1_3:-56243965 Msa0127030:CDS
AGCTTGAACCTTATGCATAT+TGG 0.332365 1_3:-56243298 Msa0127030:CDS
TCCCTTGCTCGTTCAATCAT+AGG 0.348873 1_3:+56250654 None:intergenic
AACCTTTAATAAACCAAGAT+TGG 0.349531 1_3:+56247006 None:intergenic
GTTCCTGTGCGATGCGGTCC+AGG 0.354576 1_3:+56254797 None:intergenic
AAGGTTGCTCGCGGCCTTGT+TGG 0.356041 1_3:-56247267 Msa0127030:CDS
TAGACAAAACAAGAACATTC+AGG 0.356460 1_3:-56250353 Msa0127030:CDS
AATAAAGGCAATCAAGTCTA+TGG 0.356481 1_3:+56248621 None:intergenic
CTGTGGTAAATATGACAAAA+AGG 0.357847 1_3:-56243208 Msa0127030:CDS
TTCTGAATCGTCTACTTTGT+TGG 0.358506 1_3:+56249334 None:intergenic
AGGTTGCTCGCGGCCTTGTT+GGG 0.364178 1_3:-56247266 Msa0127030:CDS
TCCATCCACATTTGTCCTGC+TGG 0.368547 1_3:-56247151 Msa0127030:CDS
GAACAGGGCTTATGAAATTC+TGG 0.371930 1_3:-56247513 Msa0127030:CDS
CCGTTATGCGCCTTGTGACT+AGG 0.376054 1_3:+56253316 None:intergenic
GTGTTGGTGGTTTGCGGCGG+TGG 0.378305 1_3:+56254912 None:intergenic
TTCCAAATTTAATGGTATAA+GGG 0.379913 1_3:+56250773 None:intergenic
CAAGAATATACAAAACTTGT+TGG 0.382877 1_3:+56253430 None:intergenic
TTCTCCTTCAACACAGCAAC+GGG 0.387031 1_3:+56254709 None:intergenic
ATTCTAAAACAGTATATTGT+TGG 0.389703 1_3:-56250711 Msa0127030:CDS
AACACCTCAAGTAGTGCTTC+GGG 0.393913 1_3:+56253249 None:intergenic
GGGTCAGCTCTTGTTGCAAT+GGG 0.394671 1_3:-56250813 Msa0127030:CDS
CTTGCAGACAAATGACTATC+AGG 0.396859 1_3:+56243440 None:intergenic
AATCAGCAGTGTCTTCATTT+GGG 0.400201 1_3:-56243964 Msa0127030:intron
ATCATTTGCATTTGCTCCAC+CGG 0.400256 1_3:+56253506 None:intergenic
GAGTCGTCGGCCACAGCAAC+GGG 0.401771 1_3:-56243255 Msa0127030:CDS
CATTCAGGATTCAAATGATA+AGG 0.406494 1_3:-56250338 Msa0127030:CDS
TTTCCTCACTGAGATAATAC+TGG 0.407293 1_3:-56248398 Msa0127030:CDS
CGAAGCTTGAGGTTCTGCTT+GGG 0.409869 1_3:-56248685 Msa0127030:CDS
TTATCACTATGCTGCTTCTT+GGG 0.410599 1_3:-56252791 Msa0127030:CDS
CGTTATGCGCCTTGTGACTA+GGG 0.411687 1_3:+56253317 None:intergenic
AATTTCATAAGCCCTGTTCC+TGG 0.412637 1_3:+56247517 None:intergenic
CATGGACTATCAATAAATAA+AGG 0.414417 1_3:+56248606 None:intergenic
TGCAGCTTCATGCGTGCCTT+GGG 0.415736 1_3:-56250833 Msa0127030:intron
TTCGCAGCTTCATTGTTGCC+TGG 0.416944 1_3:-56249092 Msa0127030:CDS
AGTTCCCGTTGCTGTGTTGA+AGG 0.418162 1_3:-56254713 Msa0127030:CDS
TCGAAGCTTGAGGTTCTGCT+TGG 0.418257 1_3:-56248686 Msa0127030:CDS
AGATGATGGTGGTTGTTTGC+AGG 0.419096 1_3:-56250173 Msa0127030:intron
TTTGAAGTGGTTAAGAATGT+TGG 0.419659 1_3:+56253362 None:intergenic
ATCTCAGTGAGGAAAACTTC+TGG 0.421709 1_3:+56248406 None:intergenic
TGGGTCAGCTCTTGTTGCAA+TGG 0.423842 1_3:-56250814 Msa0127030:CDS
ACTGATTGAGACACGTCATT+TGG 0.425094 1_3:+56249290 None:intergenic
ATAGTGACCTGTTTCCTAAA+GGG 0.427478 1_3:+56251481 None:intergenic
CTTGTATAATTACTCGCAAC+AGG 0.428147 1_3:-56250281 Msa0127030:CDS
TAACACCTCAAGTAGTGCTT+CGG 0.429890 1_3:+56253248 None:intergenic
AGACACAGCTAAAAGTTTCA+AGG 0.430200 1_3:-56250458 Msa0127030:CDS
CTTAGACAAACCTGCAATGC+TGG 0.433016 1_3:+56249026 None:intergenic
CTTGAAGGCAAGAGTGTCTC+TGG 0.435014 1_3:-56243185 Msa0127030:CDS
CAGAGCCTGGTAGGGCTGGT+AGG 0.435386 1_3:-56243382 Msa0127030:CDS
GTGCAGCTTCATGCGTGCCT+TGG 0.435418 1_3:-56250834 Msa0127030:intron
TCGGCCACAGCAACGGGCTG+CGG 0.436473 1_3:-56243249 Msa0127030:CDS
GGCTGCGGCAAGAAAAGGTT+TGG 0.439493 1_3:-56243234 Msa0127030:CDS
AGAGCCTGGTAGGGCTGGTA+GGG 0.440903 1_3:-56243381 Msa0127030:CDS
CAACGGGCTGCGGCAAGAAA+AGG 0.445082 1_3:-56243239 Msa0127030:CDS
TGCTTGACCGGCAGAAAGTA+AGG 0.447864 1_3:-56243613 Msa0127030:CDS
GGATTATAGTAGGCAAGATA+TGG 0.448758 1_3:-56250317 Msa0127030:CDS
ATGAGGTGGATAGGTGGATT+AGG 0.450128 1_3:+56254775 None:intergenic
ACTGCTCGCTTGCTTGATGC+TGG 0.451373 1_3:-56253165 Msa0127030:CDS
GATTATTATTTGTAGGATGT+TGG 0.451539 1_3:-56248933 Msa0127030:intron
GAAAGGAAGGCATTCTTTCA+AGG 0.451620 1_3:+56253404 None:intergenic
ATGAGTCGATGGCGATGGCC+TGG 0.451976 1_3:-56248429 Msa0127030:CDS
TGAATTGCATATATCATCGT+TGG 0.452485 1_3:+56254957 None:intergenic
CTGCGCCACATGCTCATCCC+TGG 0.456440 1_3:-56254815 Msa0127030:CDS
ACAGAGGTGTTGGTGGTTTG+CGG 0.458316 1_3:+56254906 None:intergenic
GCAATCAAGTCTATGGCGTT+TGG 0.458967 1_3:+56248628 None:intergenic
TGAGATAATACTGGCTCTAA+AGG 0.459212 1_3:-56248389 Msa0127030:CDS
AAAGAAGAACCTAATATTCG+TGG 0.460647 1_3:-56250406 Msa0127030:CDS
AAGCTGGTGGAGATATTAAG+AGG 0.462330 1_3:-56243328 Msa0127030:CDS
AGTCAAAGGTTTAGCTCGCT+TGG 0.462774 1_3:-56247217 Msa0127030:CDS
TAGACTGGTTCTCTTCCAAC+AGG 0.465106 1_3:-56253646 Msa0127030:CDS
TTCACATTTGTTGATTCATA+GGG 0.466227 1_3:-56254599 Msa0127030:CDS
ACAGCAGAGCCTGGTAGGGC+TGG 0.471151 1_3:-56243386 Msa0127030:CDS
TTCATAGGGATAGTGTTCAT+TGG 0.476869 1_3:-56254585 Msa0127030:CDS
ACTGTTGCACTTATCATATG+TGG 0.478961 1_3:+56247237 None:intergenic
AGTATACCTCTCATAAAGTA+AGG 0.479237 1_3:+56251547 None:intergenic
AAGAATATACAAAACTTGTT+GGG 0.480754 1_3:+56253431 None:intergenic
CTTCATTTACAGGGTACAAT+CGG 0.483174 1_3:-56249443 Msa0127030:intron
ACGTGTCTCAATCAGTTCTC+AGG 0.484837 1_3:-56249283 Msa0127030:intron
GAGATTGCCTTCTTACCTGT+TGG 0.485411 1_3:+56253631 None:intergenic
GCAAAGTAGACGGAACCATA+TGG 0.487129 1_3:-56244086 Msa0127030:CDS
ACTTGAAAGGTTTCTACTGC+TGG 0.487430 1_3:-56253529 Msa0127030:CDS
AGCCACTTGATTTGCTTGAC+CGG 0.490414 1_3:-56243625 Msa0127030:CDS
TGGTTGAGTGTTTGTTTAAG+TGG 0.490627 1_3:-56246934 Msa0127030:CDS
GATAGTGACCTGTTTCCTAA+AGG 0.491830 1_3:+56251480 None:intergenic
TTGGATGAATCAAGGATGTC+AGG 0.493009 1_3:-56252862 Msa0127030:CDS
TTCTCTTCCAACAGGTAAGA+AGG 0.494757 1_3:-56253638 Msa0127030:CDS
CGTTTGATCATCCGTGAGGA+AGG 0.495561 1_3:-56243515 Msa0127030:CDS
TCGTTTGTTCCCCTTCCTCA+CGG 0.496835 1_3:+56243504 None:intergenic
GCAGTAGAAACCTTTCAAGT+AGG 0.497113 1_3:+56253532 None:intergenic
AGTCATTTGTCTGCAAGGTC+CGG 0.497944 1_3:-56243434 Msa0127030:CDS
AGGTTGCAACAGAAAATTTG+AGG 0.498991 1_3:-56250261 Msa0127030:CDS
AACAGAAAATTTGAGGGCAC+TGG 0.500332 1_3:-56250254 Msa0127030:CDS
AGCAAGGGAGAAGGCTCAAA+AGG 0.502078 1_3:-56250640 Msa0127030:intron
CGAAGAAGAACAGCAGAGCC+TGG 0.503610 1_3:-56243395 Msa0127030:CDS
AGTGAGGAAAACTTCTGGCC+AGG 0.505041 1_3:+56248411 None:intergenic
GCCTATGATTGAACGAGCAA+GGG 0.506421 1_3:-56250655 Msa0127030:CDS
CAACACCTCTGTGCCGTCAT+CGG 0.508265 1_3:-56254895 Msa0127030:CDS
GATCATGGAAGAAGTCGAAA+TGG 0.508740 1_3:-56255004 None:intergenic
GAAGAACAGCAGAGCCTGGT+AGG 0.508883 1_3:-56243391 Msa0127030:CDS
AAATGATGATGATGGAACTA+AGG 0.509116 1_3:-56253490 Msa0127030:CDS
AAACGATGGTGATGGAACTA+AGG 0.509658 1_3:-56253457 Msa0127030:CDS
CCTTTACTTATTAAAATCAA+AGG 0.510837 1_3:-56248552 Msa0127030:intron
ATGCATATTGGCCACTTGAT+CGG 0.511215 1_3:-56243286 Msa0127030:CDS
GGGAGTGGATCAGATAACTT+TGG 0.513350 1_3:-56252881 Msa0127030:CDS
ATCCCTGGACCGCATCGCAC+AGG 0.513406 1_3:-56254800 Msa0127030:CDS
CAAATGATAAGGATTATAGT+AGG 0.514770 1_3:-56250327 Msa0127030:CDS
GAAGGATAGTTACAAAATGA+AGG 0.516245 1_3:+56250481 None:intergenic
TGCCTATGATTGAACGAGCA+AGG 0.516549 1_3:-56250656 Msa0127030:CDS
TTAGATCTGAGAATCTCAAA+AGG 0.517424 1_3:-56243583 Msa0127030:CDS
TCTCCTCGTCTACAAGTGCA+TGG 0.518772 1_3:+56247480 None:intergenic
AAGTTTGATTAAACAGGGAG+TGG 0.520498 1_3:-56252896 Msa0127030:CDS
CTGAAATCTACAAAAGATGA+TGG 0.520706 1_3:-56250187 Msa0127030:CDS
TCTGCAAGGTCCGGAACTAA+AGG 0.523343 1_3:-56243425 Msa0127030:CDS
AAAGAACTCAAAAGAAAGGC+AGG 0.523354 1_3:-56243133 Msa0127030:CDS
TCAAGTGGCCAATATGCATA+AGG 0.523498 1_3:+56243290 None:intergenic
CTTGCCGCAGCCCGTTGCTG+TGG 0.524543 1_3:+56243245 None:intergenic
TGGTGGAGATATTAAGAGGA+AGG 0.524645 1_3:-56243324 Msa0127030:CDS
GAGCAGACCTTACTTTCTGC+CGG 0.528773 1_3:+56243606 None:intergenic
CGTCATCGGTGCAATGTCAC+AGG 0.529646 1_3:-56254881 Msa0127030:CDS
GATTCGTCAGATAAGTGCTC+AGG 0.531397 1_3:+56243656 None:intergenic
GCAAATGCAAATGATGATGA+TGG 0.531564 1_3:-56253498 Msa0127030:CDS
CTGTGACATTGCACCGATGA+CGG 0.533423 1_3:+56254882 None:intergenic
ATGATAAGTGCAACAGTCAA+AGG 0.535437 1_3:-56247231 Msa0127030:CDS
ACCTAATTTGTGAAACATAG+AGG 0.539487 1_3:+56252747 None:intergenic
ATATCTTTCGCATCTAATCC+AGG 0.541115 1_3:+56249074 None:intergenic
TAAACGAAAACAGGGAAAGC+CGG 0.542138 1_3:+56242950 None:intergenic
CAGGTATTCTGCATCACTAC+CGG 0.542320 1_3:+56244033 None:intergenic
TGTTGGTGTCATGCAGAAGA+AGG 0.543631 1_3:-56248916 Msa0127030:CDS
TTTGATCATCCGTGAGGAAG+GGG 0.546352 1_3:-56243513 Msa0127030:CDS
TTCCTGTGCGATGCGGTCCA+GGG 0.546885 1_3:+56254798 None:intergenic
GCATCATAGTCTGAATCAGC+TGG 0.547628 1_3:+56243473 None:intergenic
TATTAGCATCTGCAAGTGAA+GGG 0.550929 1_3:-56253563 Msa0127030:CDS
TGAGTCGTCGGCCACAGCAA+CGG 0.551417 1_3:-56243256 Msa0127030:CDS
AGATAACTTTGGATGAATCA+AGG 0.554149 1_3:-56252870 Msa0127030:CDS
GAATATGCTAGCAGAAAAGC+TGG 0.555725 1_3:-56243344 Msa0127030:CDS
TGACGGCACAGAGGTGTTGG+TGG 0.556509 1_3:+56254899 None:intergenic
TTTCAAAAGCAACTACATCC+AGG 0.559469 1_3:-56244572 Msa0127030:intron
CTGATAGTCATTTGTCTGCA+AGG 0.559535 1_3:-56243439 Msa0127030:CDS
CTATTAGCATCTGCAAGTGA+AGG 0.563306 1_3:-56253564 Msa0127030:CDS
GGTTGCAACAGAAAATTTGA+GGG 0.564627 1_3:-56250260 Msa0127030:CDS
CGATGACGGCACAGAGGTGT+TGG 0.566754 1_3:+56254896 None:intergenic
GTCAGACGATGATGAGGTGG+AGG 0.568488 1_3:-56243552 Msa0127030:CDS
GTGCTAAATCTGAAGAAACT+AGG 0.569984 1_3:-56244602 Msa0127030:CDS
GAAAGGTTTCTACTGCTGGC+CGG 0.570102 1_3:-56253525 Msa0127030:CDS
CTTATTTAAGAAGAAAATGT+CGG 0.570985 1_3:-56249381 Msa0127030:CDS
TATGGCGTTTGGCAGAAGAA+TGG 0.572032 1_3:+56248639 None:intergenic
TTAAAAGTGCGTCGATGAGG+TGG 0.574607 1_3:+56254761 None:intergenic
AGAATCTCAAAAGGAAGTCA+AGG 0.575312 1_3:-56243574 Msa0127030:CDS
TTTGGCATCTGAACATGAAG+AGG 0.575489 1_3:-56252974 Msa0127030:CDS
TATCGTATATTATTTGCAGC+CGG 0.575621 1_3:-56242969 Msa0127030:three_prime_UTR
CTGATTCAGACTATGATGCT+AGG 0.575801 1_3:-56243469 Msa0127030:CDS
CCTAGTCACAAGGCGCATAA+CGG 0.576731 1_3:-56253316 Msa0127030:CDS
TCAACTGAGATTTCTGGAGA+TGG 0.578863 1_3:-56253198 Msa0127030:CDS
GTGGCGCAGAAGTATGCGAC+AGG 0.579576 1_3:+56254829 None:intergenic
CAGCATAGTGATAATCAAGT+AGG 0.580924 1_3:+56252800 None:intergenic
CACCTCAAGTAGTGCTTCGG+GGG 0.582090 1_3:+56253251 None:intergenic
AGATCAAGGAACGGAAAGAG+AGG 0.582196 1_3:-56244632 Msa0127030:CDS
TAAGCCCTACCAGCCCTACC+AGG 0.584920 1_3:+56243377 None:intergenic
AACTCTCCTTACTTTATGAG+AGG 0.585087 1_3:-56251553 Msa0127030:CDS
GCAAATGAAAACGATGGTGA+TGG 0.585140 1_3:-56253465 Msa0127030:CDS
CTTCTCCTTCAACACAGCAA+CGG 0.586763 1_3:+56254708 None:intergenic
GGAGAAGAGAGAGTTTCTAT+CGG 0.587647 1_3:-56254692 Msa0127030:CDS
GTAGCCAAATCACAAGCAGA+AGG 0.588275 1_3:-56246980 Msa0127030:CDS
ACAGGATGAGTCGATGGCGA+TGG 0.588672 1_3:-56248434 Msa0127030:intron
AAGAACAGCAGAGCCTGGTA+GGG 0.589719 1_3:-56243390 Msa0127030:CDS
AACGATGGTGATGGAACTAA+GGG 0.589905 1_3:-56253456 Msa0127030:CDS
CATGCTCTTGAGTGCCTCTG+TGG 0.592318 1_3:+56252939 None:intergenic
GTTTGATCATCCGTGAGGAA+GGG 0.592610 1_3:-56243514 Msa0127030:CDS
TCCAGCAGGACAAATGTGGA+TGG 0.593882 1_3:+56247150 None:intergenic
AGTGCGTCGATGAGGTGGAT+AGG 0.595819 1_3:+56254766 None:intergenic
GATTGAACGAGCAAGGGAGA+AGG 0.598453 1_3:-56250649 Msa0127030:CDS
TCCAGAAATCTCAGTTGATG+AGG 0.599100 1_3:+56253203 None:intergenic
CTTGTAGACGAGGAGAGAGG+TGG 0.601164 1_3:-56247473 Msa0127030:CDS
CTCCTCGTCTACAAGTGCAT+GGG 0.601413 1_3:+56247481 None:intergenic
AAGGATTGCAAATGCATCTG+AGG 0.602595 1_3:-56246961 Msa0127030:CDS
GTCACAAGGCGCATAACGGA+TGG 0.603827 1_3:-56253312 Msa0127030:CDS
GCGGTCCAGGGATGAGCATG+TGG 0.606307 1_3:+56254810 None:intergenic
ATCGGAAAATGATGAGTCGT+CGG 0.608141 1_3:-56243268 Msa0127030:CDS
ATGCGACAGGTGAAGAAGAG+AGG 0.610233 1_3:+56254842 None:intergenic
TTGTTAAAAGTGCGTCGATG+AGG 0.611791 1_3:+56254758 None:intergenic
TTGTAGACGAGGAGAGAGGT+GGG 0.612466 1_3:-56247472 Msa0127030:CDS
GATGAAAGTTTGATTAAACA+GGG 0.613341 1_3:-56252901 Msa0127030:CDS
CACTGCTGATTTGAGATGCG+TGG 0.613580 1_3:+56243976 None:intergenic
TGGTAGGGCTTACACTGGGA+AGG 0.613888 1_3:-56243366 Msa0127030:CDS
GAGGTGTTGGTGGTTTGCGG+CGG 0.616455 1_3:+56254909 None:intergenic
CTGCCGACAGGATGAGTCGA+TGG 0.616653 1_3:-56248440 Msa0127030:intron
AGGGCTGGTAGGGCTTACAC+TGG 0.618442 1_3:-56243371 Msa0127030:CDS
TGGGTCAACCCCTAGTCACA+AGG 0.620843 1_3:-56253326 Msa0127030:CDS
GTCAAGGTCAGACGATGATG+AGG 0.621447 1_3:-56243558 Msa0127030:CDS
GTAGCAGATTGATAGAGCCA+TGG 0.622425 1_3:-56243096 Msa0127030:exon
GTTATGCGCCTTGTGACTAG+GGG 0.624081 1_3:+56253318 None:intergenic
CATGGAAGAAGTCGAAATGG+AGG 0.624158 1_3:-56255001 Msa0127030:CDS
GCGTCGATGAGGTGGATAGG+TGG 0.624227 1_3:+56254769 None:intergenic
AGTGTCTTTAATGATCTCAA+AGG 0.624487 1_3:-56253090 Msa0127030:intron
AGGTTTCTACTGCTGGCCGG+TGG 0.625023 1_3:-56253522 Msa0127030:CDS
CACTAAATTACAGCAAACCA+TGG 0.627971 1_3:+56243079 None:intergenic
ACACCACTCTCCAAACTCGA+TGG 0.628441 1_3:+56254643 None:intergenic
AAGAAAAGGTTTGGCAACTG+TGG 0.633505 1_3:-56243225 Msa0127030:CDS
TTTCTTCAGATTTAGCACCT+CGG 0.638177 1_3:+56244607 None:intergenic
GAAAGTTTATCAAGACATTG+CGG 0.639694 1_3:+56253598 None:intergenic
GGGCTGGTAGGGCTTACACT+GGG 0.640050 1_3:-56243370 Msa0127030:CDS
AAGGTCAGACGATGATGAGG+TGG 0.640595 1_3:-56243555 Msa0127030:CDS
TCTCTGTCTTAACCCAACAT+CGG 0.642234 1_3:-56253280 Msa0127030:CDS
TGCCCATGCACTTGTAGACG+AGG 0.643766 1_3:-56247483 Msa0127030:CDS
AATGATGATGATGGAACTAA+GGG 0.647447 1_3:-56253489 Msa0127030:CDS
ATTAGCATCTGCAAGTGAAG+GGG 0.649135 1_3:-56253562 Msa0127030:CDS
GAGGTGGAGGTAGATTCTGA+AGG 0.649844 1_3:-56243539 Msa0127030:CDS
TGCCGGTCAAGCAAATCAAG+TGG 0.651293 1_3:+56243623 None:intergenic
TTGAGATCATTAAAGACACT+AGG 0.652067 1_3:+56253093 None:intergenic
ATGCCTCTGACTTCAAGACA+TGG 0.654569 1_3:+56248588 None:intergenic
TTGTAAAACAGATCAAGGAA+CGG 0.654616 1_3:-56244641 Msa0127030:intron
ACACCTCAAGTAGTGCTTCG+GGG 0.654699 1_3:+56253250 None:intergenic
GATAATACTGGCTCTAAAGG+AGG 0.656500 1_3:-56248386 Msa0127030:intron
TTGCAACAAGAGCTGACCCA+AGG 0.656828 1_3:+56250817 None:intergenic
GAACGGAAAGAGAGGAACCG+AGG 0.676661 1_3:-56244624 Msa0127030:CDS
GCACTTGTAGACGAGGAGAG+AGG 0.679073 1_3:-56247476 Msa0127030:CDS
GATTAGGTTCCTGTGCGATG+CGG 0.681268 1_3:+56254791 None:intergenic
TTGTGAGCTAAGGTTGCTCG+CGG 0.682338 1_3:-56247276 Msa0127030:intron
TATGCTAGCAGAAAAGCTGG+TGG 0.683312 1_3:-56243341 Msa0127030:CDS
AGTCCATGTCTTGAAGTCAG+AGG 0.684722 1_3:-56248591 Msa0127030:CDS
TTGCCATCGAGTTTGGAGAG+TGG 0.688858 1_3:-56254646 Msa0127030:CDS
GGCCATACTTGCAGCCACAG+AGG 0.690135 1_3:-56252953 Msa0127030:CDS
AAAGAACAAAGAGATTACCA+AGG 0.692817 1_3:-56247124 Msa0127030:intron
AGTGATGCAGAATACCTGAA+CGG 0.696328 1_3:-56244028 Msa0127030:CDS
AAATCTACAAAAGATGATGG+TGG 0.698268 1_3:-56250184 Msa0127030:CDS
AAGGGAGCAAATGAAAACGA+TGG 0.708803 1_3:-56253471 Msa0127030:CDS
GAGCCAGTATTATCTCAGTG+AGG 0.710886 1_3:+56248395 None:intergenic
GCAAATGCATCTGAGGAGCG+TGG 0.728048 1_3:-56246954 Msa0127030:CDS
CGTTTGGCAGAAGAATGGCA+AGG 0.732352 1_3:+56248644 None:intergenic
TTGCACCGATGACGGCACAG+AGG 0.748299 1_3:+56254890 None:intergenic
AGGACGTTTGATCATCCGTG+AGG 0.749026 1_3:-56243519 Msa0127030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATATAATTTGTTTGT+TGG - chr1_3:56245285-56245304 Msa0127030:intron 10.0%
!!! ATTTATATAATTTGTTTGTT+GGG - chr1_3:56245286-56245305 Msa0127030:intron 10.0%
!! ATAGAATTTATACTTATATA+TGG - chr1_3:56248328-56248347 Msa0127030:intron 10.0%
!! AATTTGTAAAAAAGTAATTT+AGG - chr1_3:56251905-56251924 Msa0127030:intron 10.0%
!! ATTTGTAAAAAAGTAATTTA+GGG - chr1_3:56251906-56251925 Msa0127030:intron 10.0%
!!! TTTTTTTTTTTTTTGCTTTT+TGG + chr1_3:56251982-56252001 None:intergenic 10.0%
!! TTAAAAAAAAATCTACAAAA+AGG + chr1_3:56252291-56252310 None:intergenic 10.0%
!!! TGTTAAATTTTTTAATTAAG+TGG - chr1_3:56254971-56254990 Msa0127030:CDS 10.0%
!!! TTCAAAACTCTTTTAAATAT+GGG - chr1_3:56244618-56244637 Msa0127030:CDS 15.0%
!!! GTTTCTATTATAGTTTTTAT+AGG + chr1_3:56246121-56246140 None:intergenic 15.0%
!! ATATATTTAAGAGAAAAAAC+AGG + chr1_3:56246300-56246319 None:intergenic 15.0%
!! TATTTGTGTAATGAAATTAT+AGG + chr1_3:56246334-56246353 None:intergenic 15.0%
!! TTAACATTAACTTATTTACT+AGG + chr1_3:56248111-56248130 None:intergenic 15.0%
!!! TTTTTTATTTTTTGTGAAGT+TGG - chr1_3:56248745-56248764 Msa0127030:intron 15.0%
!! TTATTGTGATTATTATTTGT+AGG - chr1_3:56249023-56249042 Msa0127030:intron 15.0%
!!! TTGTATTGGTTTTTATTTAT+TGG - chr1_3:56249158-56249177 Msa0127030:intron 15.0%
!!! TATTAAGTTTTTAATAGGAT+AGG - chr1_3:56250219-56250238 Msa0127030:CDS 15.0%
!!! TTTACATCTTCTATTTTATT+TGG - chr1_3:56250573-56250592 Msa0127030:intron 15.0%
!!! ATCATTTTGATAATTCTTTT+AGG - chr1_3:56251329-56251348 Msa0127030:intron 15.0%
!!! TTAGTTTTTTTGAAAATTCA+GGG + chr1_3:56251424-56251443 None:intergenic 15.0%
!! TTTGTAAAAAAGTAATTTAG+GGG - chr1_3:56251907-56251926 Msa0127030:intron 15.0%
!! TAAAAAAATTGAAACTTTCA+AGG - chr1_3:56253213-56253232 Msa0127030:CDS 15.0%
!! AAAAAAATTGAAACTTTCAA+GGG - chr1_3:56253214-56253233 Msa0127030:CDS 15.0%
!!! AAGATTTTAACACAAAAAAA+TGG + chr1_3:56253283-56253302 None:intergenic 15.0%
!!! AGAAAAAAATGACAATTTTT+GGG + chr1_3:56253687-56253706 None:intergenic 15.0%
!!! AAGAAAAAAATGACAATTTT+TGG + chr1_3:56253688-56253707 None:intergenic 15.0%
!! GTAATCATTGTTAATATAAA+TGG - chr1_3:56254078-56254097 Msa0127030:intron 15.0%
!! AATACCAAAAATAAAAAGAT+AGG + chr1_3:56254132-56254151 None:intergenic 15.0%
!!! TTTCAAATTTTCTATCTGAT+AGG - chr1_3:56243476-56243495 Msa0127030:CDS 20.0%
!!! TTCAAATTTTCTATCTGATA+GGG - chr1_3:56243477-56243496 Msa0127030:CDS 20.0%
!! AAACCTTTATAATAATCTGA+TGG - chr1_3:56243617-56243636 Msa0127030:CDS 20.0%
!! TAACCATCAGATTATTATAA+AGG + chr1_3:56243623-56243642 None:intergenic 20.0%
!! ATTGTTAATCAACAAATCAT+AGG - chr1_3:56243719-56243738 Msa0127030:intron 20.0%
!! ATTATTACTATTGTGAATTG+TGG - chr1_3:56244246-56244265 Msa0127030:intron 20.0%
!! TTATTACTATTGTGAATTGT+GGG - chr1_3:56244247-56244266 Msa0127030:intron 20.0%
!!! TTTTGATTAGTTTAATAGAC+TGG - chr1_3:56244302-56244321 Msa0127030:intron 20.0%
!!! AAGAATATACAAAACTTGTT+GGG + chr1_3:56244535-56244554 None:intergenic 20.0%
!!! TATTTAAAAGAGTTTTGAAG+TGG + chr1_3:56244617-56244636 None:intergenic 20.0%
!!! CTTCAAAACTCTTTTAAATA+TGG - chr1_3:56244617-56244636 Msa0127030:CDS 20.0%
!!! TTTTAAATGTGCAGATATTT+TGG - chr1_3:56244971-56244990 Msa0127030:intron 20.0%
!!! TACACAAATTTTCTCAATAA+TGG + chr1_3:56245132-56245151 None:intergenic 20.0%
!! TGACTAATAATGTATACAAA+AGG - chr1_3:56245337-56245356 Msa0127030:intron 20.0%
!! GACTAATAATGTATACAAAA+GGG - chr1_3:56245338-56245357 Msa0127030:intron 20.0%
!! AGAGTAAAATTTGAATCAAA+AGG - chr1_3:56245374-56245393 Msa0127030:intron 20.0%
!! GAGTAAAATTTGAATCAAAA+GGG - chr1_3:56245375-56245394 Msa0127030:intron 20.0%
!!! AGTTGAAGGAAAAATTTTAT+CGG - chr1_3:56245800-56245819 Msa0127030:intron 20.0%
!! TGGTTTATGATATAACATAA+TGG - chr1_3:56246182-56246201 Msa0127030:intron 20.0%
!! TAATCTCAAAAATAAGTAAC+AGG + chr1_3:56246367-56246386 None:intergenic 20.0%
!! TCTTATCATGTGTATAAAAT+TGG - chr1_3:56246759-56246778 Msa0127030:intron 20.0%
!! CTTATCATGTGTATAAAATT+GGG - chr1_3:56246760-56246779 Msa0127030:intron 20.0%
!! TATAAGGGATAAAAAAGTTT+CGG + chr1_3:56247178-56247197 None:intergenic 20.0%
!! TTCCAAATTTAATGGTATAA+GGG + chr1_3:56247193-56247212 None:intergenic 20.0%
!!! ACAATATACTGTTTTAGAAT+TGG + chr1_3:56247252-56247271 None:intergenic 20.0%
!!! ATTCTAAAACAGTATATTGT+TGG - chr1_3:56247252-56247271 Msa0127030:CDS 20.0%
!! ATTTCTATATTCACAATTGA+AGG + chr1_3:56248310-56248329 None:intergenic 20.0%
!! CAAATCAAATGTAACAAATA+AGG + chr1_3:56248473-56248492 None:intergenic 20.0%
!! CTTATTTAAGAAGAAAATGT+CGG - chr1_3:56248582-56248601 Msa0127030:CDS 20.0%
!! AGTTTCAAATTATCTTGTAT+TGG - chr1_3:56249144-56249163 Msa0127030:intron 20.0%
!!! CCTTTGATTTTAATAAGTAA+AGG + chr1_3:56249414-56249433 None:intergenic 20.0%
!! CCTTTACTTATTAAAATCAA+AGG - chr1_3:56249411-56249430 Msa0127030:CDS 20.0%
!!! TGTTAAATGTGGAAATTTTT+GGG - chr1_3:56249608-56249627 Msa0127030:intron 20.0%
!!! CTCTGTATTAAGTTTTTAAT+AGG - chr1_3:56250214-56250233 Msa0127030:CDS 20.0%
!!! TTAATCATGTACAATACTTT+TGG - chr1_3:56250351-56250370 Msa0127030:CDS 20.0%
!! AACAACACAAATTCAAATTA+CGG + chr1_3:56250667-56250686 None:intergenic 20.0%
!!! TGTTTCATTTTCTATTTTGT+TGG - chr1_3:56250864-56250883 Msa0127030:intron 20.0%
!!! CTTTGCTTTAAAATGATTTT+TGG + chr1_3:56251065-56251084 None:intergenic 20.0%
!!! CAAAAATCATTTTAAAGCAA+AGG - chr1_3:56251063-56251082 Msa0127030:intron 20.0%
!!! TAGTTTTTTTGAAAATTCAG+GGG + chr1_3:56251423-56251442 None:intergenic 20.0%
!!! CTTAGTTTTTTTGAAAATTC+AGG + chr1_3:56251425-56251444 None:intergenic 20.0%
!! CAAAATGTAGCAATAAATTT+GGG + chr1_3:56252184-56252203 None:intergenic 20.0%
!! ACAAAATGTAGCAATAAATT+TGG + chr1_3:56252185-56252204 None:intergenic 20.0%
!!! TTTTTTTTAATGCCAAATGT+TGG - chr1_3:56252301-56252320 Msa0127030:intron 20.0%
!! TAAAGAATGAATAAGATTCT+TGG - chr1_3:56253018-56253037 Msa0127030:intron 20.0%
!!! TAAATCAACTTTTTTTAGCA+AGG - chr1_3:56253239-56253258 Msa0127030:CDS 20.0%
!! TAAATATTCAAAACCTCAAA+GGG + chr1_3:56253476-56253495 None:intergenic 20.0%
!! ATAAATATTCAAAACCTCAA+AGG + chr1_3:56253477-56253496 None:intergenic 20.0%
!! TAGCATATATTTGAATTGAA+AGG + chr1_3:56253523-56253542 None:intergenic 20.0%
!!! GAAAAAAATGACAATTTTTG+GGG + chr1_3:56253686-56253705 None:intergenic 20.0%
!! AATCTGAAAAAATATCCATA+TGG + chr1_3:56253895-56253914 None:intergenic 20.0%
!!! ATTTTTGGTATTGCATAAAT+TGG - chr1_3:56254140-56254159 Msa0127030:intron 20.0%
!!! GTGTATTTATTTGATGATAA+AGG - chr1_3:56254904-56254923 Msa0127030:CDS 20.0%
!!! ATAAAGGAAAACAAGTTTTT+GGG - chr1_3:56254920-56254939 Msa0127030:CDS 20.0%
!!! TTTCACATTTGTTGATTCAT+AGG - chr1_3:56243363-56243382 Msa0127030:CDS 25.0%
!!! TTCACATTTGTTGATTCATA+GGG - chr1_3:56243364-56243383 Msa0127030:CDS 25.0%
! AAATCATAGGTAGATATTGT+AGG - chr1_3:56243732-56243751 Msa0127030:intron 25.0%
!! AATTGCCATTTAAAACGAAA+CGG - chr1_3:56244079-56244098 Msa0127030:CDS 25.0%
! CAGAATGTTAGAAATGAAAA+GGG + chr1_3:56244125-56244144 None:intergenic 25.0%
! TCAGAATGTTAGAAATGAAA+AGG + chr1_3:56244126-56244145 None:intergenic 25.0%
! ACAAGCTTGACAAATTAAAA+AGG + chr1_3:56244197-56244216 None:intergenic 25.0%
! TATTACTATTGTGAATTGTG+GGG - chr1_3:56244248-56244267 Msa0127030:intron 25.0%
! CAAGAATATACAAAACTTGT+TGG + chr1_3:56244536-56244555 None:intergenic 25.0%
!!! TTGTATTTTAGAGACAAGAA+AGG + chr1_3:56244579-56244598 None:intergenic 25.0%
!!! AGAAAGTTTTTTCTCTAAAC+AGG - chr1_3:56244826-56244845 Msa0127030:intron 25.0%
! TGATGAAAGTTTGATTAAAC+AGG - chr1_3:56245061-56245080 Msa0127030:intron 25.0%
! GATGAAAGTTTGATTAAACA+GGG - chr1_3:56245062-56245081 Msa0127030:intron 25.0%
!! CAAATTTTCTCAATAATGGT+TGG + chr1_3:56245128-56245147 None:intergenic 25.0%
! AAAGGGAATGATTTAAAGAT+TGG - chr1_3:56245392-56245411 Msa0127030:intron 25.0%
!!! AATGATTTAAAGATTGGTCT+AGG - chr1_3:56245398-56245417 Msa0127030:intron 25.0%
!! CTTATATTTTTCCCTAGTTT+CGG + chr1_3:56245434-56245453 None:intergenic 25.0%
! TAGAATGTAATTTCAGCAAA+AGG - chr1_3:56245608-56245627 Msa0127030:intron 25.0%
!!! CGGTAGAACTTTTTTTTTAA+TGG + chr1_3:56245657-56245676 None:intergenic 25.0%
! AACACTTATAGTAGAAAAGA+TGG - chr1_3:56245985-56246004 Msa0127030:intron 25.0%
! GTTATATCATAAACCATGTT+TGG + chr1_3:56246178-56246197 None:intergenic 25.0%
! AGTTTCATATTTGTGTAGTT+TGG + chr1_3:56246537-56246556 None:intergenic 25.0%
! ATGAGAAACTGTTCAAAATT+GGG + chr1_3:56246613-56246632 None:intergenic 25.0%
! TATGAGAAACTGTTCAAAAT+TGG + chr1_3:56246614-56246633 None:intergenic 25.0%
!! ATTTTGAACAGTTTCTCATA+TGG - chr1_3:56246614-56246633 Msa0127030:intron 25.0%
!! TTTTGAACAGTTTCTCATAT+GGG - chr1_3:56246615-56246634 Msa0127030:intron 25.0%
! TTGTCACAGAATAAATAACA+AGG + chr1_3:56246728-56246747 None:intergenic 25.0%
! TTGATTCATACAAATTTGAG+TGG - chr1_3:56246974-56246993 Msa0127030:CDS 25.0%
!! AATCGACTTAATTATGATAC+TGG + chr1_3:56247019-56247038 None:intergenic 25.0%
!!! ATTAAGTCGATTTTTGTTAG+AGG - chr1_3:56247027-56247046 Msa0127030:intron 25.0%
! ATAAGGGATAAAAAAGTTTC+GGG + chr1_3:56247177-56247196 None:intergenic 25.0%
! ATCCCTTATACCATTAAATT+TGG - chr1_3:56247188-56247207 Msa0127030:CDS 25.0%
! CTTCCAAATTTAATGGTATA+AGG + chr1_3:56247194-56247213 None:intergenic 25.0%
! ATTTATCCGTCTCAAATAAA+TGG - chr1_3:56247220-56247239 Msa0127030:CDS 25.0%
! AAAAAGCCATTTATTTGAGA+CGG + chr1_3:56247229-56247248 None:intergenic 25.0%
! CATATTATTCCACGAATATT+AGG + chr1_3:56247569-56247588 None:intergenic 25.0%
! CAAATGATAAGGATTATAGT+AGG - chr1_3:56247636-56247655 Msa0127030:intron 25.0%
!! ATTATACAAGACTTGTTCTT+TGG + chr1_3:56247672-56247691 None:intergenic 25.0%
! CAGATCTTTCAACAAATTAT+TGG + chr1_3:56247744-56247763 None:intergenic 25.0%
! AAACTCGAATAATGATTATG+TGG - chr1_3:56248196-56248215 Msa0127030:intron 25.0%
! AACTCGAATAATGATTATGT+GGG - chr1_3:56248197-56248216 Msa0127030:intron 25.0%
! AGATCTTCATTATTCTGATA+AGG - chr1_3:56248372-56248391 Msa0127030:intron 25.0%
!!! GTACTAGTCTATTTTTTTCT+TGG - chr1_3:56248411-56248430 Msa0127030:CDS 25.0%
!! ATGATTTTGCTTCATTTACA+GGG - chr1_3:56248511-56248530 Msa0127030:intron 25.0%
! AATTTAAGTAAAATGCAGAC+TGG + chr1_3:56248785-56248804 None:intergenic 25.0%
! TACTTAAATTATGTGCTTGT+TGG - chr1_3:56248795-56248814 Msa0127030:intron 25.0%
! ACTTAAATTATGTGCTTGTT+GGG - chr1_3:56248796-56248815 Msa0127030:intron 25.0%
! TTCAAATAGAAATGCTAAGA+TGG - chr1_3:56249000-56249019 Msa0127030:intron 25.0%
! GATTATTATTTGTAGGATGT+TGG - chr1_3:56249030-56249049 Msa0127030:intron 25.0%
!! CATGGACTATCAATAAATAA+AGG + chr1_3:56249360-56249379 None:intergenic 25.0%
!! GTGTTAAATGTGGAAATTTT+TGG - chr1_3:56249607-56249626 Msa0127030:intron 25.0%
!!! TATTTTAAGAAATGCGACAT+TGG + chr1_3:56249657-56249676 None:intergenic 25.0%
!! CTGAATCAGTATATTTCTTT+TGG - chr1_3:56249678-56249697 Msa0127030:intron 25.0%
! ATTCAAAATGGTGGTATTTA+GGG - chr1_3:56249982-56250001 Msa0127030:intron 25.0%
! ATTTAGGGAGTAAATAAACT+CGG - chr1_3:56249997-56250016 Msa0127030:intron 25.0%
!! AAGTTTTTAATAGGATAGGA+TGG - chr1_3:56250223-56250242 Msa0127030:CDS 25.0%
!!! TTGTGATTTTAGTCATTATG+TGG - chr1_3:56250298-56250317 Msa0127030:CDS 25.0%
!!! AATTTTGAGGTTATCTTTAC+AGG - chr1_3:56250411-56250430 Msa0127030:CDS 25.0%
! TAATAAAAAAACCAGGAACA+GGG - chr1_3:56250435-56250454 Msa0127030:CDS 25.0%
! CCATGATAAAAAATTGATAG+AGG + chr1_3:56250528-56250547 None:intergenic 25.0%
!!! CCTCTATCAATTTTTTATCA+TGG - chr1_3:56250525-56250544 Msa0127030:CDS 25.0%
! ATATCATCTTGTACTCTTAT+TGG - chr1_3:56250605-56250624 Msa0127030:intron 25.0%
! ATAGAAAATGAAACAAACCT+TGG + chr1_3:56250859-56250878 None:intergenic 25.0%
! GAAGACAGGTATTTAATTAA+GGG + chr1_3:56250927-56250946 None:intergenic 25.0%
! AGAAGACAGGTATTTAATTA+AGG + chr1_3:56250928-56250947 None:intergenic 25.0%
! AACCTTTAATAAACCAAGAT+TGG + chr1_3:56250960-56250979 None:intergenic 25.0%
!!! TTTCATTGATTTGTTGAGTA+TGG - chr1_3:56251135-56251154 Msa0127030:intron 25.0%
!!! TTTTCAGGTTAAACTTCTTT+TGG - chr1_3:56251209-56251228 Msa0127030:intron 25.0%
!!! TTTCAGGTTAAACTTCTTTT+GGG - chr1_3:56251210-56251229 Msa0127030:intron 25.0%
! TTTAGGCTAAAATATGCATT+TGG - chr1_3:56251346-56251365 Msa0127030:intron 25.0%
! ATTTAGATCTGGAAATTTGT+GGG + chr1_3:56251663-56251682 None:intergenic 25.0%
! AATTAATCAAAATCCAGATC+TGG - chr1_3:56251790-56251809 Msa0127030:intron 25.0%
! ATTAATCAAAATCCAGATCT+GGG - chr1_3:56251791-56251810 Msa0127030:intron 25.0%
! TTGAAAGAGAACAAATTCTA+TGG - chr1_3:56251817-56251836 Msa0127030:intron 25.0%
! TGAAAGAGAACAAATTCTAT+GGG - chr1_3:56251818-56251837 Msa0127030:intron 25.0%
! TTGTATTAAAGAAGCTGATT+GGG + chr1_3:56251864-56251883 None:intergenic 25.0%
! TTTGTATTAAAGAAGCTGAT+TGG + chr1_3:56251865-56251884 None:intergenic 25.0%
!! TTTTTATATCAGACCTATGT+TGG - chr1_3:56252147-56252166 Msa0127030:intron 25.0%
! AACAACTAATTACCAACATT+TGG + chr1_3:56252316-56252335 None:intergenic 25.0%
! TCTAGATCTAGATCTTAAAA+AGG + chr1_3:56252433-56252452 None:intergenic 25.0%
! CTCATCATAGAAAATAATAG+TGG - chr1_3:56252903-56252922 Msa0127030:CDS 25.0%
! TTAATCAAAAAATGCTGATG+TGG + chr1_3:56253168-56253187 None:intergenic 25.0%
! TGATTAAAAAGAACACATCA+AGG - chr1_3:56253181-56253200 Msa0127030:CDS 25.0%
! AAATGGCTAAAATATGCATT+TGG + chr1_3:56253266-56253285 None:intergenic 25.0%
! ATAAATACAAGATCATTACC+TGG + chr1_3:56253412-56253431 None:intergenic 25.0%
! AATAAATAGCTATGCCAAAA+TGG - chr1_3:56253589-56253608 Msa0127030:CDS 25.0%
!! CCAAACTTAAAAAACCATTT+TGG + chr1_3:56253606-56253625 None:intergenic 25.0%
!!! CCAAAATGGTTTTTTAAGTT+TGG - chr1_3:56253603-56253622 Msa0127030:CDS 25.0%
!!! TTCTAAATTTTGAAAGTGAC+AGG - chr1_3:56253706-56253725 Msa0127030:intron 25.0%
!! AACAATGTGATATCTTTTTC+AGG - chr1_3:56253855-56253874 Msa0127030:intron 25.0%
!!! GCTTCCTATCTTTTTATTTT+TGG - chr1_3:56254125-56254144 Msa0127030:intron 25.0%
! TCTACACTTTATTCTATAGT+AGG + chr1_3:56254215-56254234 None:intergenic 25.0%
!!! ATTGTTTTTTAGTCTCATCT+TGG + chr1_3:56254284-56254303 None:intergenic 25.0%
! CTAAAAAGAACTCAAAAGAA+AGG - chr1_3:56254826-56254845 Msa0127030:CDS 25.0%
!! GATAAAGGAAAACAAGTTTT+TGG - chr1_3:56254919-56254938 Msa0127030:CDS 25.0%
TGAATTGCATATATCATCGT+TGG + chr1_3:56243009-56243028 None:intergenic 30.0%
AATTCACGAATTGTTACCTT+CGG + chr1_3:56243458-56243477 None:intergenic 30.0%
AGCTATACAAATGTGAAACT+AGG - chr1_3:56243654-56243673 Msa0127030:CDS 30.0%
GCTATACAAATGTGAAACTA+GGG - chr1_3:56243655-56243674 Msa0127030:CDS 30.0%
CAAAATTGCATCTCAATTTC+AGG + chr1_3:56243843-56243862 None:intergenic 30.0%
TAACAATGTCCTATAGACTA+TGG + chr1_3:56243887-56243906 None:intergenic 30.0%
TGTAGAACTTGTATTAGGAT+AGG + chr1_3:56243953-56243972 None:intergenic 30.0%
TTGAAGATTGTATACTAGAC+CGG + chr1_3:56243997-56244016 None:intergenic 30.0%
GTTCGTGTATTATTGTATTG+TGG - chr1_3:56244219-56244238 Msa0127030:intron 30.0%
ATTACTATTGTGAATTGTGG+GGG - chr1_3:56244249-56244268 Msa0127030:intron 30.0%
GAAAGTTTATCAAGACATTG+CGG + chr1_3:56244368-56244387 None:intergenic 30.0%
!! AAATGATGATGATGGAACTA+AGG - chr1_3:56244473-56244492 Msa0127030:intron 30.0%
!! AATGATGATGATGGAACTAA+GGG - chr1_3:56244474-56244493 Msa0127030:intron 30.0%
!! ATTTTAGAGACAAGAAAGGA+AGG + chr1_3:56244575-56244594 None:intergenic 30.0%
! TTTGAAGTGGTTAAGAATGT+TGG + chr1_3:56244604-56244623 None:intergenic 30.0%
TTGAGATCATTAAAGACACT+AGG + chr1_3:56244873-56244892 None:intergenic 30.0%
AGTGTCTTTAATGATCTCAA+AGG - chr1_3:56244873-56244892 Msa0127030:intron 30.0%
!!! GTTACTTGTTTTGACAACTA+TGG - chr1_3:56244932-56244951 Msa0127030:intron 30.0%
AGATAACTTTGGATGAATCA+AGG - chr1_3:56245093-56245112 Msa0127030:intron 30.0%
TCCTCTATGTTTCACAAATT+AGG - chr1_3:56245215-56245234 Msa0127030:intron 30.0%
! ACCTAATTTGTGAAACATAG+AGG + chr1_3:56245219-56245238 None:intergenic 30.0%
!!! TTTTTTTTAATGGCACTCTG+AGG + chr1_3:56245647-56245666 None:intergenic 30.0%
GTAAATCATCGTATTCAATC+TGG - chr1_3:56245711-56245730 Msa0127030:intron 30.0%
TATCGCATAAAAAACACTTG+AGG + chr1_3:56245765-56245784 None:intergenic 30.0%
! AATTTTTCCTTCAACTTGAG+CGG + chr1_3:56245796-56245815 None:intergenic 30.0%
TGCTATGCTTTACTTTATTC+TGG + chr1_3:56245885-56245904 None:intergenic 30.0%
ACTTATAGTAGAAAAGATGG+TGG - chr1_3:56245988-56246007 Msa0127030:intron 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG - chr1_3:56245996-56246015 Msa0127030:intron 30.0%
CTCTTTACTATCAAATCTAC+AGG + chr1_3:56246052-56246071 None:intergenic 30.0%
! TAATGAGTTGAATCCAAACA+TGG - chr1_3:56246162-56246181 Msa0127030:intron 30.0%
ATTACTGCTATAATCAATGC+AGG - chr1_3:56246383-56246402 Msa0127030:intron 30.0%
AGTATACCTCTCATAAAGTA+AGG + chr1_3:56246419-56246438 None:intergenic 30.0%
! CTAAAGGGAAAATTTTCATC+AGG + chr1_3:56246470-56246489 None:intergenic 30.0%
! CTGATGAAAATTTTCCCTTT+AGG - chr1_3:56246468-56246487 Msa0127030:intron 30.0%
!! AAATTTTCCCTTTAGGAAAC+AGG - chr1_3:56246475-56246494 Msa0127030:intron 30.0%
TGAGAAACTGTTCAAAATTG+GGG + chr1_3:56246612-56246631 None:intergenic 30.0%
AATACATTCAACTCTGTTAC+AGG + chr1_3:56246645-56246664 None:intergenic 30.0%
TATTTATTCTGTGACAAGTC+TGG - chr1_3:56246731-56246750 Msa0127030:intron 30.0%
ATTTATTCTGTGACAAGTCT+GGG - chr1_3:56246732-56246751 Msa0127030:intron 30.0%
TACAAATTTGAGTGGTTTCT+TGG - chr1_3:56246982-56247001 Msa0127030:CDS 30.0%
TCTTCAGCTTCCAAATTTAA+TGG + chr1_3:56247201-56247220 None:intergenic 30.0%
!! GCGTCTAAAATATTTTACAG+AGG - chr1_3:56247278-56247297 Msa0127030:intron 30.0%
!!! TGCACTGTTATTTTTCTTCA+TGG - chr1_3:56247369-56247388 Msa0127030:intron 30.0%
GAAGGATAGTTACAAAATGA+AGG + chr1_3:56247485-56247504 None:intergenic 30.0%
AAAGAAGAACCTAATATTCG+TGG - chr1_3:56247557-56247576 Msa0127030:intron 30.0%
TAGACAAAACAAGAACATTC+AGG - chr1_3:56247610-56247629 Msa0127030:intron 30.0%
CATTCAGGATTCAAATGATA+AGG - chr1_3:56247625-56247644 Msa0127030:intron 30.0%
! CATCATCTTTTGTAGATTTC+AGG + chr1_3:56247778-56247797 None:intergenic 30.0%
CTGAAATCTACAAAAGATGA+TGG - chr1_3:56247776-56247795 Msa0127030:intron 30.0%
! AAATCTACAAAAGATGATGG+TGG - chr1_3:56247779-56247798 Msa0127030:intron 30.0%
GAAGACGCAATTCATATATT+TGG + chr1_3:56247852-56247871 None:intergenic 30.0%
! TCGATATTTCTTTAGAGAGA+GGG + chr1_3:56248164-56248183 None:intergenic 30.0%
! ATCGATATTTCTTTAGAGAG+AGG + chr1_3:56248165-56248184 None:intergenic 30.0%
TCAGAATAATGAAGATCTGT+CGG + chr1_3:56248370-56248389 None:intergenic 30.0%
! GATGATTTTGCTTCATTTAC+AGG - chr1_3:56248510-56248529 Msa0127030:intron 30.0%
! ATGAATTTCTTTTCATCCCA+GGG - chr1_3:56248834-56248853 Msa0127030:intron 30.0%
! GCAGAAATGTTTTTCTAACA+TGG + chr1_3:56249204-56249223 None:intergenic 30.0%
AATAAAGGCAATCAAGTCTA+TGG + chr1_3:56249345-56249364 None:intergenic 30.0%
!! AAATCAAAGGTATCCAAAGT+TGG - chr1_3:56249424-56249443 Msa0127030:CDS 30.0%
!! AATCAAAGGTATCCAAAGTT+GGG - chr1_3:56249425-56249444 Msa0127030:CDS 30.0%
CAACTATAAATGGACATATC+AGG + chr1_3:56249820-56249839 None:intergenic 30.0%
CCATTGCTTACAACTATAAA+TGG + chr1_3:56249830-56249849 None:intergenic 30.0%
CCATTTATAGTTGTAAGCAA+TGG - chr1_3:56249827-56249846 Msa0127030:intron 30.0%
CATTCAAAATGGTGGTATTT+AGG - chr1_3:56249981-56250000 Msa0127030:intron 30.0%
TTTAGGGAGTAAATAAACTC+GGG - chr1_3:56249998-56250017 Msa0127030:intron 30.0%
AATCAAAAGTGATATGTGCT+TGG + chr1_3:56250109-56250128 None:intergenic 30.0%
TGTGGATATAATGTTCAGAA+AGG - chr1_3:56250316-56250335 Msa0127030:CDS 30.0%
TACAGGCTAATAAAAAAACC+AGG - chr1_3:56250428-56250447 Msa0127030:CDS 30.0%
CTAATAAAAAAACCAGGAAC+AGG - chr1_3:56250434-56250453 Msa0127030:CDS 30.0%
! ATTCAAATTACGGTTGGTAT+GGG + chr1_3:56250657-56250676 None:intergenic 30.0%
! AATTCAAATTACGGTTGGTA+TGG + chr1_3:56250658-56250677 None:intergenic 30.0%
ACACAAATTCAAATTACGGT+TGG + chr1_3:56250663-56250682 None:intergenic 30.0%
AAAGAACAAAGAGATTACCA+AGG - chr1_3:56250839-56250858 Msa0127030:intron 30.0%
! ACCAGAATCAAATTCTTTTC+AGG - chr1_3:56251194-56251213 Msa0127030:intron 30.0%
ACCTGAAAAGAATTTGATTC+TGG + chr1_3:56251198-56251217 None:intergenic 30.0%
AAAAACTAAGCAAGTCCTTA+AGG - chr1_3:56251435-56251454 Msa0127030:intron 30.0%
TCAGCTAAAATTTCACCTTA+AGG + chr1_3:56251453-56251472 None:intergenic 30.0%
!!! AGGTGAAATTTTAGCTGATT+TGG - chr1_3:56251455-56251474 Msa0127030:intron 30.0%
TTGGCCAATTTAAACTTATG+CGG - chr1_3:56251474-56251493 Msa0127030:intron 30.0%
TTTAGATCTGGAAATTTGTG+GGG + chr1_3:56251662-56251681 None:intergenic 30.0%
GATTTAGATCTGGAAATTTG+TGG + chr1_3:56251664-56251683 None:intergenic 30.0%
TTGACTAATTCGATTGACAA+AGG + chr1_3:56251691-56251710 None:intergenic 30.0%
AACAATGTTCATGAAGATTC+GGG + chr1_3:56251948-56251967 None:intergenic 30.0%
CAACAATGTTCATGAAGATT+CGG + chr1_3:56251949-56251968 None:intergenic 30.0%
AAATAAGTTCACCAATGAGT+TGG + chr1_3:56252129-56252148 None:intergenic 30.0%
ATGTATGGATGAAGAAGAAT+GGG + chr1_3:56252228-56252247 None:intergenic 30.0%
AATGTATGGATGAAGAAGAA+TGG + chr1_3:56252229-56252248 None:intergenic 30.0%
!! CTCTCATTTATTCGTTTTTG+GGG + chr1_3:56252268-56252287 None:intergenic 30.0%
!! GCTCTCATTTATTCGTTTTT+GGG + chr1_3:56252269-56252288 None:intergenic 30.0%
TCTAGATCTTAAAAAGGCTT+GGG + chr1_3:56252427-56252446 None:intergenic 30.0%
ATCTAGATCTTAAAAAGGCT+TGG + chr1_3:56252428-56252447 None:intergenic 30.0%
!! GTGATGTTTTTACTGAAATC+AGG - chr1_3:56252726-56252745 Msa0127030:intron 30.0%
!! TGTTTTTACTGAAATCAGGA+AGG - chr1_3:56252730-56252749 Msa0127030:intron 30.0%
TAAAGTTTGCAGAAAATGCA+TGG + chr1_3:56252834-56252853 None:intergenic 30.0%
TGAAAACTATGAATCAGAAG+AGG + chr1_3:56252862-56252881 None:intergenic 30.0%
AGATGACAACAAGAATTCAT+TGG + chr1_3:56252885-56252904 None:intergenic 30.0%
ATTACAATCTCAGAGATAGA+TGG - chr1_3:56252972-56252991 Msa0127030:CDS 30.0%
TCCATTTGTAAAACAGATCA+AGG - chr1_3:56253317-56253336 Msa0127030:CDS 30.0%
! TCCTTGATCTGTTTTACAAA+TGG + chr1_3:56253321-56253340 None:intergenic 30.0%
TTGTAAAACAGATCAAGGAA+CGG - chr1_3:56253322-56253341 Msa0127030:CDS 30.0%
! TAAAAGTACAAGACTAACCA+TGG + chr1_3:56253745-56253764 None:intergenic 30.0%
AGTTGTATCTTGAATTGCAT+TGG - chr1_3:56253832-56253851 Msa0127030:intron 30.0%
! ATTCATCGCATGAATTTTGT+TGG - chr1_3:56254048-56254067 Msa0127030:intron 30.0%
TATAAATGGAGTCGTTATTC+TGG - chr1_3:56254092-56254111 Msa0127030:intron 30.0%
CTTTATTCTATAGTAGGTTC+TGG + chr1_3:56254209-56254228 None:intergenic 30.0%
TTAGATCTGAGAATCTCAAA+AGG - chr1_3:56254380-56254399 Msa0127030:intron 30.0%
CTGTGGTAAATATGACAAAA+AGG - chr1_3:56254755-56254774 Msa0127030:CDS 30.0%
AATATGACAAAAAGGCTTGA+AGG - chr1_3:56254763-56254782 Msa0127030:CDS 30.0%
TATCGTATATTATTTGCAGC+CGG - chr1_3:56254994-56255013 Msa0127030:CDS 30.0%
TTCATAGGGATAGTGTTCAT+TGG - chr1_3:56243378-56243397 Msa0127030:CDS 35.0%
AATCTGATGGTTACTGTTAC+TGG - chr1_3:56243630-56243649 Msa0127030:CDS 35.0%
ATCTGATGGTTACTGTTACT+GGG - chr1_3:56243631-56243650 Msa0127030:CDS 35.0%
TTACACTTTACTCGCTTTAG+AGG - chr1_3:56243809-56243828 Msa0127030:intron 35.0%
TGCATCTCAATTTCAGGATT+TGG + chr1_3:56243837-56243856 None:intergenic 35.0%
GTGCATATACCATAGTCTAT+AGG - chr1_3:56243875-56243894 Msa0127030:intron 35.0%
AGCAGTGTAGAACTTGTATT+AGG + chr1_3:56243958-56243977 None:intergenic 35.0%
!! GTTCTACACTGCTTTTGTTT+TGG - chr1_3:56243965-56243984 Msa0127030:CDS 35.0%
!!! ACACTGCTTTTGTTTTGGTT+TGG - chr1_3:56243970-56243989 Msa0127030:CDS 35.0%
TCTTCAACTTCCATCATCAT+TGG - chr1_3:56244010-56244029 Msa0127030:CDS 35.0%
!! CTAGACCGTTTCGTTTTAAA+TGG + chr1_3:56244087-56244106 None:intergenic 35.0%
! CATTTAAAACGAAACGGTCT+AGG - chr1_3:56244085-56244104 Msa0127030:CDS 35.0%
TATTAGCATCTGCAAGTGAA+GGG - chr1_3:56244400-56244419 Msa0127030:intron 35.0%
! GCAAATGCAAATGATGATGA+TGG - chr1_3:56244465-56244484 Msa0127030:intron 35.0%
AAGTTTGATTAAACAGGGAG+TGG - chr1_3:56245067-56245086 Msa0127030:intron 35.0%
CAGCATAGTGATAATCAAGT+AGG + chr1_3:56245166-56245185 None:intergenic 35.0%
! ATTATCACTATGCTGCTTCT+TGG - chr1_3:56245171-56245190 Msa0127030:intron 35.0%
! TTATCACTATGCTGCTTCTT+GGG - chr1_3:56245172-56245191 Msa0127030:intron 35.0%
GTGTAAAAATGCCGAAACTA+GGG - chr1_3:56245420-56245439 Msa0127030:intron 35.0%
CTATCTTGCTTCTACTTAGA+TGG + chr1_3:56245582-56245601 None:intergenic 35.0%
TACAACTTGAGTGGTAACTT+GGG + chr1_3:56245694-56245713 None:intergenic 35.0%
TTACAACTTGAGTGGTAACT+TGG + chr1_3:56245695-56245714 None:intergenic 35.0%
ACGATGATTTACAACTTGAG+TGG + chr1_3:56245703-56245722 None:intergenic 35.0%
GCTTTACTTTATTCTGGTGT+TGG + chr1_3:56245879-56245898 None:intergenic 35.0%
ACAACATTAGAGAGTGAGTT+GGG - chr1_3:56245960-56245979 Msa0127030:intron 35.0%
AAAATAGGCTTAGGTGGTTT+GGG - chr1_3:56246011-56246030 Msa0127030:intron 35.0%
AGTAAAGAGAGTAGATCAGA+TGG - chr1_3:56246063-56246082 Msa0127030:intron 35.0%
GAGGATAATCATATCACAAG+AGG - chr1_3:56246085-56246104 Msa0127030:intron 35.0%
AATCATATCACAAGAGGTAG+AGG - chr1_3:56246091-56246110 Msa0127030:intron 35.0%
AACTCTCCTTACTTTATGAG+AGG - chr1_3:56246410-56246429 Msa0127030:intron 35.0%
! GAGAGGTATACTCAAAAACA+TGG - chr1_3:56246427-56246446 Msa0127030:intron 35.0%
ATAGTGACCTGTTTCCTAAA+GGG + chr1_3:56246485-56246504 None:intergenic 35.0%
ACATGATTTCAAAAGCCGAT+AGG - chr1_3:56246689-56246708 Msa0127030:intron 35.0%
! TCGATTTTTGTTAGAGGATC+TGG - chr1_3:56247033-56247052 Msa0127030:intron 35.0%
AGCTGCAAAATGTACAAAGT+AGG + chr1_3:56247404-56247423 None:intergenic 35.0%
ACACACTTGTTTACTCTTTG+TGG - chr1_3:56247450-56247469 Msa0127030:CDS 35.0%
!! AAACTTTTAGCTGTGTCTGA+AGG + chr1_3:56247503-56247522 None:intergenic 35.0%
AGACACAGCTAAAAGTTTCA+AGG - chr1_3:56247505-56247524 Msa0127030:CDS 35.0%
GGATTATAGTAGGCAAGATA+TGG - chr1_3:56247646-56247665 Msa0127030:intron 35.0%
CTTGTATAATTACTCGCAAC+AGG - chr1_3:56247682-56247701 Msa0127030:intron 35.0%
AGGTTGCAACAGAAAATTTG+AGG - chr1_3:56247702-56247721 Msa0127030:intron 35.0%
GGTTGCAACAGAAAATTTGA+GGG - chr1_3:56247703-56247722 Msa0127030:intron 35.0%
AATGCAGTATGCACTATAGT+TGG - chr1_3:56247825-56247844 Msa0127030:intron 35.0%
ATGCAGTATGCACTATAGTT+GGG - chr1_3:56247826-56247845 Msa0127030:intron 35.0%
! GATATTTCTTTAGAGAGAGG+GGG + chr1_3:56248162-56248181 None:intergenic 35.0%
! CGATATTTCTTTAGAGAGAG+GGG + chr1_3:56248163-56248182 None:intergenic 35.0%
CATCTACTCATGGATAACTA+AGG + chr1_3:56248251-56248270 None:intergenic 35.0%
ATATTCACAATTGAAGGACC+TGG + chr1_3:56248304-56248323 None:intergenic 35.0%
CTTCATTTACAGGGTACAAT+CGG - chr1_3:56248520-56248539 Msa0127030:intron 35.0%
TTCTGAATCGTCTACTTTGT+TGG + chr1_3:56248632-56248651 None:intergenic 35.0%
! CATGAATTTCTTTTCATCCC+AGG - chr1_3:56248833-56248852 Msa0127030:intron 35.0%
ATATCTTTCGCATCTAATCC+AGG + chr1_3:56248892-56248911 None:intergenic 35.0%
AGTTTCCAAAATTCCTTGCA+AGG + chr1_3:56248975-56248994 None:intergenic 35.0%
! AGTTCTTTTGATCATGCTCA+AGG - chr1_3:56249077-56249096 Msa0127030:CDS 35.0%
!! TTTTGTTTCATCGAAGCTTG+AGG - chr1_3:56249267-56249286 Msa0127030:intron 35.0%
TTTCCTCACTGAGATAATAC+TGG - chr1_3:56249565-56249584 Msa0127030:intron 35.0%
!! TGAGATAATACTGGCTCTAA+AGG - chr1_3:56249574-56249593 Msa0127030:intron 35.0%
AGGTAATGCAGTGTTAAATG+TGG - chr1_3:56249597-56249616 Msa0127030:intron 35.0%
AAGAAATGCGACATTGGAAA+GGG + chr1_3:56249651-56249670 None:intergenic 35.0%
TAAGAAATGCGACATTGGAA+AGG + chr1_3:56249652-56249671 None:intergenic 35.0%
!!! ATATTTCTTTTGGCTCTGCT+CGG - chr1_3:56249688-56249707 Msa0127030:intron 35.0%
CCTAAAAAATGCGTGGAAAT+TGG + chr1_3:56249746-56249765 None:intergenic 35.0%
!!! CCAATTTCCACGCATTTTTT+AGG - chr1_3:56249743-56249762 Msa0127030:intron 35.0%
ATATCAGGAAATTCCCAGTT+AGG + chr1_3:56249805-56249824 None:intergenic 35.0%
CTTAGTGTCTTACATATGGT+GGG + chr1_3:56249928-56249947 None:intergenic 35.0%
TCTTAGTGTCTTACATATGG+TGG + chr1_3:56249929-56249948 None:intergenic 35.0%
GCATCTTAGTGTCTTACATA+TGG + chr1_3:56249932-56249951 None:intergenic 35.0%
GATGGTCACTATGAAATCAT+GGG + chr1_3:56250026-56250045 None:intergenic 35.0%
TGATGGTCACTATGAAATCA+TGG + chr1_3:56250027-56250046 None:intergenic 35.0%
ATTTCATAGTGACCATCAAG+CGG - chr1_3:56250029-56250048 Msa0127030:intron 35.0%
GTTCTCTACATAGTCTTCTA+AGG - chr1_3:56250054-56250073 Msa0127030:intron 35.0%
! GCTTGTGAAGTTAATTTGGA+TGG + chr1_3:56250377-56250396 None:intergenic 35.0%
GGAAGCTTGTGAAGTTAATT+TGG + chr1_3:56250381-56250400 None:intergenic 35.0%
GAGTACAAGATGATATCAAG+TGG + chr1_3:56250601-56250620 None:intergenic 35.0%
!!! TTGTGTTGTTTTGTGAGCTA+AGG - chr1_3:56250677-56250696 Msa0127030:CDS 35.0%
ACTGTTGCACTTATCATATG+TGG + chr1_3:56250729-56250748 None:intergenic 35.0%
ATGATAAGTGCAACAGTCAA+AGG - chr1_3:56250732-56250751 Msa0127030:CDS 35.0%
!!! CTTTGTTCTTTTTTTCCAGC+AGG + chr1_3:56250830-56250849 None:intergenic 35.0%
GGTATTTAATTAAGGGCTCA+AGG + chr1_3:56250920-56250939 None:intergenic 35.0%
GGCCAATCTTGGTTTATTAA+AGG - chr1_3:56250955-56250974 Msa0127030:intron 35.0%
TGGTTGAGTGTTTGTTTAAG+TGG - chr1_3:56251029-56251048 Msa0127030:intron 35.0%
AGAAGTTTCATATGCTCTTC+AGG + chr1_3:56251282-56251301 None:intergenic 35.0%
TCAACAAACCTTGTGTATGT+TGG + chr1_3:56251307-56251326 None:intergenic 35.0%
CAAAACTCGCTATATTTGCA+AGG + chr1_3:56251373-56251392 None:intergenic 35.0%
! CTTGCAAATATAGCGAGTTT+TGG - chr1_3:56251371-56251390 Msa0127030:intron 35.0%
TGTGCCGCATAAGTTTAAAT+TGG + chr1_3:56251481-56251500 None:intergenic 35.0%
GGGTTAAAGATGAAGATTGA+TGG + chr1_3:56251620-56251639 None:intergenic 35.0%
TTAGATCTGGAAATTTGTGG+GGG + chr1_3:56251661-56251680 None:intergenic 35.0%
TTAAAGAAGCTGATTGGGAA+TGG + chr1_3:56251859-56251878 None:intergenic 35.0%
! ATAGTCTGAAACCAACTCAT+TGG - chr1_3:56252115-56252134 Msa0127030:intron 35.0%
GGTTATTGCAAAACCAACAT+AGG + chr1_3:56252163-56252182 None:intergenic 35.0%
!!! TTATTCGTTTTTGGGGTTCT+GGG + chr1_3:56252261-56252280 None:intergenic 35.0%
!!! TTTATTCGTTTTTGGGGTTC+TGG + chr1_3:56252262-56252281 None:intergenic 35.0%
! GGCTCTCATTTATTCGTTTT+TGG + chr1_3:56252270-56252289 None:intergenic 35.0%
!!! ATTAGTTTTTCTCCTTCGTC+TGG - chr1_3:56252338-56252357 Msa0127030:intron 35.0%
!! TTAGTTTTTCTCCTTCGTCT+GGG - chr1_3:56252339-56252358 Msa0127030:intron 35.0%
TAGATCTTAAAAAGGCTTGG+GGG + chr1_3:56252425-56252444 None:intergenic 35.0%
CTAGATCTTAAAAAGGCTTG+GGG + chr1_3:56252426-56252445 None:intergenic 35.0%
!!! CGACATTTTTTTGAAGAAGC+TGG + chr1_3:56252460-56252479 None:intergenic 35.0%
TCTAATGGCAAGGTAAATGA+AGG - chr1_3:56252937-56252956 Msa0127030:CDS 35.0%
TTTCTTCAGATTTAGCACCT+CGG + chr1_3:56253359-56253378 None:intergenic 35.0%
GTGCTAAATCTGAAGAAACT+AGG - chr1_3:56253361-56253380 Msa0127030:CDS 35.0%
TTTCAAAAGCAACTACATCC+AGG - chr1_3:56253391-56253410 Msa0127030:CDS 35.0%
TTCAATCACATAACCCTTTG+AGG - chr1_3:56253460-56253479 Msa0127030:CDS 35.0%
TGTCTTACAACAAAGCTTAG+TGG + chr1_3:56253633-56253652 None:intergenic 35.0%
TCAAGTATGTCACTCTAACA+TGG + chr1_3:56253663-56253682 None:intergenic 35.0%
!! ATGAAAGCTTTAGAAGTGCA+TGG + chr1_3:56253771-56253790 None:intergenic 35.0%
!!! TCTTTTTCAGGCAAAGTAGA+CGG - chr1_3:56253867-56253886 Msa0127030:intron 35.0%
TAAAAATTGTCTTGCCGTTC+AGG + chr1_3:56253952-56253971 None:intergenic 35.0%
!! AACGGCAAGACAATTTTTAG+CGG - chr1_3:56253953-56253972 Msa0127030:intron 35.0%
AAATCAGCAGTGTCTTCATT+TGG - chr1_3:56253998-56254017 Msa0127030:intron 35.0%
AATCAGCAGTGTCTTCATTT+GGG - chr1_3:56253999-56254018 Msa0127030:intron 35.0%
CTTCATTTGGGTAAAGCTTT+AGG - chr1_3:56254011-56254030 Msa0127030:intron 35.0%
!! GGATGGATTATTACTCATCA+AGG + chr1_3:56254173-56254192 None:intergenic 35.0%
AGAATCTCAAAAGGAAGTCA+AGG - chr1_3:56254389-56254408 Msa0127030:intron 35.0%
AGCTTGAACCTTATGCATAT+TGG - chr1_3:56254665-56254684 Msa0127030:CDS 35.0%
AAAGAACTCAAAAGAAAGGC+AGG - chr1_3:56254830-56254849 Msa0127030:CDS 35.0%
CACTAAATTACAGCAAACCA+TGG + chr1_3:56254887-56254906 None:intergenic 35.0%
! TTGTTAAAAGTGCGTCGATG+AGG + chr1_3:56243208-56243227 None:intergenic 40.0%
GGAGAAGAGAGAGTTTCTAT+CGG - chr1_3:56243271-56243290 Msa0127030:CDS 40.0%
TGTTATGTTGCCATCGAGTT+TGG - chr1_3:56243310-56243329 Msa0127030:CDS 40.0%
!! TCTTACTGATTCAAGACCGA+AGG - chr1_3:56243439-56243458 Msa0127030:CDS 40.0%
CAAATGTGAAACTAGGGATC+AGG - chr1_3:56243661-56243680 Msa0127030:CDS 40.0%
!!! GCTTTTGTTTTGGTTTGGTC+CGG - chr1_3:56243975-56243994 Msa0127030:CDS 40.0%
CAACTTCCATCATCATTGGT+CGG - chr1_3:56244014-56244033 Msa0127030:CDS 40.0%
CAAGACAGGCTGTAATAGTT+GGG - chr1_3:56244155-56244174 Msa0127030:intron 40.0%
AGGCTGTAATAGTTGGGAAT+GGG - chr1_3:56244161-56244180 Msa0127030:intron 40.0%
TTCTCTTCCAACAGGTAAGA+AGG - chr1_3:56244325-56244344 Msa0127030:intron 40.0%
CTATTAGCATCTGCAAGTGA+AGG - chr1_3:56244399-56244418 Msa0127030:intron 40.0%
ATTAGCATCTGCAAGTGAAG+GGG - chr1_3:56244401-56244420 Msa0127030:intron 40.0%
GGGTCAAAAACCTACTTGAA+AGG - chr1_3:56244421-56244440 Msa0127030:intron 40.0%
! GCAGTAGAAACCTTTCAAGT+AGG + chr1_3:56244434-56244453 None:intergenic 40.0%
ACTTGAAAGGTTTCTACTGC+TGG - chr1_3:56244434-56244453 Msa0127030:intron 40.0%
ATCATTTGCATTTGCTCCAC+CGG + chr1_3:56244460-56244479 None:intergenic 40.0%
AAGGGAGCAAATGAAAACGA+TGG - chr1_3:56244492-56244511 Msa0127030:intron 40.0%
GCAAATGAAAACGATGGTGA+TGG - chr1_3:56244498-56244517 Msa0127030:intron 40.0%
!! AAACGATGGTGATGGAACTA+AGG - chr1_3:56244506-56244525 Msa0127030:intron 40.0%
!! AACGATGGTGATGGAACTAA+GGG - chr1_3:56244507-56244526 Msa0127030:intron 40.0%
!! GAAAGGAAGGCATTCTTTCA+AGG + chr1_3:56244562-56244581 None:intergenic 40.0%
TCTCTGTCTTAACCCAACAT+CGG - chr1_3:56244683-56244702 Msa0127030:intron 40.0%
TAACACCTCAAGTAGTGCTT+CGG + chr1_3:56244718-56244737 None:intergenic 40.0%
ACCTCATCAACTGAGATTTC+TGG - chr1_3:56244759-56244778 Msa0127030:intron 40.0%
! TCCAGAAATCTCAGTTGATG+AGG + chr1_3:56244763-56244782 None:intergenic 40.0%
! TCAACTGAGATTTCTGGAGA+TGG - chr1_3:56244765-56244784 Msa0127030:intron 40.0%
TTTGGCATCTGAACATGAAG+AGG - chr1_3:56244989-56245008 Msa0127030:intron 40.0%
TTGGATGAATCAAGGATGTC+AGG - chr1_3:56245101-56245120 Msa0127030:intron 40.0%
GGTGTAAAAATGCCGAAACT+AGG - chr1_3:56245419-56245438 Msa0127030:intron 40.0%
AATCTGCAACGTCTCTTTCT+CGG + chr1_3:56245461-56245480 None:intergenic 40.0%
GCAGATTATGTAGTCATGCA+TGG - chr1_3:56245490-56245509 Msa0127030:intron 40.0%
AGTCAAAGGGGGAATTGAAT+GGG - chr1_3:56245515-56245534 Msa0127030:intron 40.0%
CTTGGGGTATGATATGATCT+CGG + chr1_3:56245677-56245696 None:intergenic 40.0%
ACAACTTGAGTGGTAACTTG+GGG + chr1_3:56245693-56245712 None:intergenic 40.0%
TGTTGTATGGAACAGAGTGT+TGG - chr1_3:56245842-56245861 Msa0127030:intron 40.0%
! GTTGTATGGAACAGAGTGTT+GGG - chr1_3:56245843-56245862 Msa0127030:intron 40.0%
AGTAAAGCATAGCAGAGATG+AGG - chr1_3:56245891-56245910 Msa0127030:intron 40.0%
GACAACATTAGAGAGTGAGT+TGG - chr1_3:56245959-56245978 Msa0127030:intron 40.0%
CAACATTAGAGAGTGAGTTG+GGG - chr1_3:56245961-56245980 Msa0127030:intron 40.0%
!! AGATGGTGGAAAATAGGCTT+AGG - chr1_3:56246002-56246021 Msa0127030:intron 40.0%
GAAAATAGGCTTAGGTGGTT+TGG - chr1_3:56246010-56246029 Msa0127030:intron 40.0%
AAAGAGAGTAGATCAGATGG+AGG - chr1_3:56246066-56246085 Msa0127030:intron 40.0%
GATAGTGACCTGTTTCCTAA+AGG + chr1_3:56246486-56246505 None:intergenic 40.0%
TTGATATGTTCTTTCCCAGC+AGG - chr1_3:56246578-56246597 Msa0127030:intron 40.0%
CTGTTCAAAATTGGGGCATA+TGG + chr1_3:56246605-56246624 None:intergenic 40.0%
! AACAGAAAATTTGAGGGCAC+TGG - chr1_3:56247709-56247728 Msa0127030:intron 40.0%
TAACTCCAAAGCCAAAATGC+TGG + chr1_3:56248043-56248062 None:intergenic 40.0%
TACTAGGAGTGAAGTGAGAT+CGG + chr1_3:56248095-56248114 None:intergenic 40.0%
TTGCTCAAGACATCTACTCA+TGG + chr1_3:56248261-56248280 None:intergenic 40.0%
!! AGCTTTAGAAGTGTTCAACC+AGG - chr1_3:56248283-56248302 Msa0127030:intron 40.0%
ACTGATTGAGACACGTCATT+TGG + chr1_3:56248676-56248695 None:intergenic 40.0%
! ATTATGTGCTTGTTGGGTGT+CGG - chr1_3:56248802-56248821 Msa0127030:intron 40.0%
AGTAATAAAGCCAGCATTGC+AGG - chr1_3:56248927-56248946 Msa0127030:intron 40.0%
TAACATGGAACTAGCTCAGA+AGG + chr1_3:56249189-56249208 None:intergenic 40.0%
! TCTGCTTACTGTTTTCTCGT+TGG - chr1_3:56249219-56249238 Msa0127030:intron 40.0%
TGGATGCAATAACCCAACTT+TGG + chr1_3:56249440-56249459 None:intergenic 40.0%
! CACAACAAAAGTGTGCATCA+AGG + chr1_3:56249472-56249491 None:intergenic 40.0%
! CTTGATGCACACTTTTGTTG+TGG - chr1_3:56249470-56249489 Msa0127030:intron 40.0%
ATCTCAGTGAGGAAAACTTC+TGG + chr1_3:56249560-56249579 None:intergenic 40.0%
!! GATAATACTGGCTCTAAAGG+AGG - chr1_3:56249577-56249596 Msa0127030:intron 40.0%
!!! TTCCACGCATTTTTTAGGTG+TGG - chr1_3:56249748-56249767 Msa0127030:intron 40.0%
!!! TCCACGCATTTTTTAGGTGT+GGG - chr1_3:56249749-56249768 Msa0127030:intron 40.0%
TTGCACATACAATAGCACAC+TGG - chr1_3:56249853-56249872 Msa0127030:intron 40.0%
TGCACATACAATAGCACACT+GGG - chr1_3:56249854-56249873 Msa0127030:intron 40.0%
ATACAATAGCACACTGGGTA+AGG - chr1_3:56249859-56249878 Msa0127030:intron 40.0%
!! CATATGGTGGGTACAAAAAC+AGG + chr1_3:56249916-56249935 None:intergenic 40.0%
TTTCATAGTGACCATCAAGC+GGG - chr1_3:56250030-56250049 Msa0127030:intron 40.0%
TGTCAATCATATGTGCATGC+TGG + chr1_3:56250082-56250101 None:intergenic 40.0%
! TCCAGACGTGCTAAATTTTG+AGG - chr1_3:56250398-56250417 Msa0127030:CDS 40.0%
ACCTCAAAATTTAGCACGTC+TGG + chr1_3:56250402-56250421 None:intergenic 40.0%
AATTTCATAAGCCCTGTTCC+TGG + chr1_3:56250449-56250468 None:intergenic 40.0%
GAACAGGGCTTATGAAATTC+TGG - chr1_3:56250450-56250469 Msa0127030:CDS 40.0%
! TATGTGGAGTTTTCCCAACA+AGG + chr1_3:56250713-56250732 None:intergenic 40.0%
! TTTTTCCAGCAGGACAAATG+TGG + chr1_3:56250820-56250839 None:intergenic 40.0%
CAATCCTTCTGCTTGTGATT+TGG + chr1_3:56250990-56251009 None:intergenic 40.0%
AAGGATTGCAAATGCATCTG+AGG - chr1_3:56251002-56251021 Msa0127030:intron 40.0%
!! GTTGAGTATGGCTGTTGTTT+TGG - chr1_3:56251147-56251166 Msa0127030:intron 40.0%
! TTCAGGTAGGACAGCTTTAA+CGG + chr1_3:56251265-56251284 None:intergenic 40.0%
GTTTCATATGCTCTTCAGGT+AGG + chr1_3:56251278-56251297 None:intergenic 40.0%
ACTTCTGTCCAACATACACA+AGG - chr1_3:56251296-56251315 Msa0127030:intron 40.0%
GAAATTTGTGGGGGTGAATA+AGG + chr1_3:56251652-56251671 None:intergenic 40.0%
CAAAGGCAGTGATTTAGATC+TGG + chr1_3:56251674-56251693 None:intergenic 40.0%
!! ACCATCGTCAAAGCATTGAA+AGG - chr1_3:56251751-56251770 Msa0127030:intron 40.0%
!! CCATCGTCAAAGCATTGAAA+GGG - chr1_3:56251752-56251771 Msa0127030:intron 40.0%
TGTTAGTGAGATGTTGAGGA+GGG + chr1_3:56252090-56252109 None:intergenic 40.0%
ATGTTAGTGAGATGTTGAGG+AGG + chr1_3:56252091-56252110 None:intergenic 40.0%
CGAATGTTAGTGAGATGTTG+AGG + chr1_3:56252094-56252113 None:intergenic 40.0%
! AAGAAGAATGGGTCAGGTTT+TGG + chr1_3:56252217-56252236 None:intergenic 40.0%
CTGGGAGATCAAAGAATGTA+TGG + chr1_3:56252243-56252262 None:intergenic 40.0%
ATGAGAAATTGGAGGTCCTA+GGG + chr1_3:56252371-56252390 None:intergenic 40.0%
TGAGCTAAGGGATGAGAAAT+TGG + chr1_3:56252382-56252401 None:intergenic 40.0%
AGATCTTAAAAAGGCTTGGG+GGG + chr1_3:56252424-56252443 None:intergenic 40.0%
ACTACTAGCTGTTGTGATGA+GGG - chr1_3:56252534-56252553 Msa0127030:intron 40.0%
GTTGTGTGAAGTTCTGTTGA+GGG - chr1_3:56252579-56252598 Msa0127030:intron 40.0%
TTGTGTGAAGTTCTGTTGAG+GGG - chr1_3:56252580-56252599 Msa0127030:intron 40.0%
TAGCGAGGATAACACAATGT+AGG - chr1_3:56252658-56252677 Msa0127030:intron 40.0%
AGGAATTAACAAGACGGAAG+TGG - chr1_3:56252699-56252718 Msa0127030:intron 40.0%
GGAATTAACAAGACGGAAGT+GGG - chr1_3:56252700-56252719 Msa0127030:intron 40.0%
TTGACCAATTTGTGCAGATG+TGG + chr1_3:56253114-56253133 None:intergenic 40.0%
TCTGCACAAATTGGTCAACT+CGG - chr1_3:56253116-56253135 Msa0127030:CDS 40.0%
CAGGACATATACTAGTTCCA+TGG - chr1_3:56253725-56253744 Msa0127030:intron 40.0%
AGTGATGCAGAATACCTGAA+CGG - chr1_3:56253935-56253954 Msa0127030:intron 40.0%
!!! ACGGCAAGACAATTTTTAGC+GGG - chr1_3:56253954-56253973 Msa0127030:intron 40.0%
GGTATTGCATAAATTGGCAG+TGG - chr1_3:56254146-56254165 Msa0127030:intron 40.0%
TGTCATTGCTTGTTCCATCT+AGG - chr1_3:56254257-56254276 Msa0127030:intron 40.0%
CTGATTCAGACTATGATGCT+AGG - chr1_3:56254494-56254513 Msa0127030:intron 40.0%
CTTGCAGACAAATGACTATC+AGG + chr1_3:56254526-56254545 None:intergenic 40.0%
CTGATAGTCATTTGTCTGCA+AGG - chr1_3:56254524-56254543 Msa0127030:intron 40.0%
GAATATGCTAGCAGAAAAGC+TGG - chr1_3:56254619-56254638 Msa0127030:CDS 40.0%
AAGCTGGTGGAGATATTAAG+AGG - chr1_3:56254635-56254654 Msa0127030:CDS 40.0%
TGGTGGAGATATTAAGAGGA+AGG - chr1_3:56254639-56254658 Msa0127030:CDS 40.0%
TCAAGTGGCCAATATGCATA+AGG + chr1_3:56254676-56254695 None:intergenic 40.0%
ATGCATATTGGCCACTTGAT+CGG - chr1_3:56254677-56254696 Msa0127030:CDS 40.0%
! CTCATCATTTTCCGATCAAG+TGG + chr1_3:56254691-56254710 None:intergenic 40.0%
ATCGGAAAATGATGAGTCGT+CGG - chr1_3:56254695-56254714 Msa0127030:CDS 40.0%
AAGAAAAGGTTTGGCAACTG+TGG - chr1_3:56254738-56254757 Msa0127030:CDS 40.0%
! ATGAGGTGGATAGGTGGATT+AGG + chr1_3:56243191-56243210 None:intergenic 45.0%
! TTAAAAGTGCGTCGATGAGG+TGG + chr1_3:56243205-56243224 None:intergenic 45.0%
TTCTCCTTCAACACAGCAAC+GGG + chr1_3:56243257-56243276 None:intergenic 45.0%
CTTCTCCTTCAACACAGCAA+CGG + chr1_3:56243258-56243277 None:intergenic 45.0%
!! TTGGAGAGTGGTGTTGTTCA+TGG - chr1_3:56243329-56243348 Msa0127030:CDS 45.0%
TTCCATCATCATTGGTCGGT+TGG - chr1_3:56244018-56244037 Msa0127030:CDS 45.0%
GCAAGACAGGCTGTAATAGT+TGG - chr1_3:56244154-56244173 Msa0127030:intron 45.0%
CAGGCTGTAATAGTTGGGAA+TGG - chr1_3:56244160-56244179 Msa0127030:intron 45.0%
TATTGTGAATTGTGGGGGCA+AGG - chr1_3:56244254-56244273 Msa0127030:intron 45.0%
ATTGTGAATTGTGGGGGCAA+GGG - chr1_3:56244255-56244274 Msa0127030:intron 45.0%
! TAGACTGGTTCTCTTCCAAC+AGG - chr1_3:56244317-56244336 Msa0127030:intron 45.0%
GAGATTGCCTTCTTACCTGT+TGG + chr1_3:56244335-56244354 None:intergenic 45.0%
AACACCTCAAGTAGTGCTTC+GGG + chr1_3:56244717-56244736 None:intergenic 45.0%
GGGAGTGGATCAGATAACTT+TGG - chr1_3:56245082-56245101 Msa0127030:intron 45.0%
AGTCATGCATGGAGAGTCAA+AGG - chr1_3:56245501-56245520 Msa0127030:intron 45.0%
GTCATGCATGGAGAGTCAAA+GGG - chr1_3:56245502-56245521 Msa0127030:intron 45.0%
TCATGCATGGAGAGTCAAAG+GGG - chr1_3:56245503-56245522 Msa0127030:intron 45.0%
GAGTCAAAGGGGGAATTGAA+TGG - chr1_3:56245514-56245533 Msa0127030:intron 45.0%
GTCAAAGGGGGAATTGAATG+GGG - chr1_3:56245516-56245535 Msa0127030:intron 45.0%
GAGACTTGGAGACAAGTCTT+GGG - chr1_3:56245544-56245563 Msa0127030:intron 45.0%
TCGTATTCAATCTGGCCATC+TGG - chr1_3:56245719-56245738 Msa0127030:intron 45.0%
CGTATTCAATCTGGCCATCT+GGG - chr1_3:56245720-56245739 Msa0127030:intron 45.0%
CTCCATTTGAATCACCCAGA+TGG + chr1_3:56245737-56245756 None:intergenic 45.0%
!! GAAAGTACCGCTCAAGTTGA+AGG - chr1_3:56245786-56245805 Msa0127030:intron 45.0%
GTCAGATCAGCGATGTTGTA+TGG - chr1_3:56245829-56245848 Msa0127030:intron 45.0%
AGGATGTTGCGTTTGATGTG+TGG - chr1_3:56245911-56245930 Msa0127030:intron 45.0%
TGGTGGAAAATAGGCTTAGG+TGG - chr1_3:56246005-56246024 Msa0127030:intron 45.0%
!! ACTAAGTGGGATTGGCTACA+TGG + chr1_3:56246219-56246238 None:intergenic 45.0%
ATGTAGCCAATCCCACTTAG+TGG - chr1_3:56246218-56246237 Msa0127030:intron 45.0%
TGTAGCCAATCCCACTTAGT+GGG - chr1_3:56246219-56246238 Msa0127030:intron 45.0%
CTTATCCCACTAAGTGGGAT+TGG + chr1_3:56246227-56246246 None:intergenic 45.0%
CAATCCCACTTAGTGGGATA+AGG - chr1_3:56246225-56246244 Msa0127030:intron 45.0%
GGTTGTTACAGAACGCCTAT+CGG + chr1_3:56246707-56246726 None:intergenic 45.0%
TGCCTATGATTGAACGAGCA+AGG - chr1_3:56247307-56247326 Msa0127030:intron 45.0%
GCCTATGATTGAACGAGCAA+GGG - chr1_3:56247308-56247327 Msa0127030:intron 45.0%
TCCCTTGCTCGTTCAATCAT+AGG + chr1_3:56247312-56247331 None:intergenic 45.0%
! GGAGAAGGCTCAAAAGGTAT+TGG - chr1_3:56247329-56247348 Msa0127030:intron 45.0%
!! AGATGATGGTGGTTGTTTGC+AGG - chr1_3:56247790-56247809 Msa0127030:intron 45.0%
AAAGCCAAAATGCTGGCAAC+TGG + chr1_3:56248036-56248055 None:intergenic 45.0%
!!! AGTTGCCAGCATTTTGGCTT+TGG - chr1_3:56248035-56248054 Msa0127030:intron 45.0%
ACGTGTCTCAATCAGTTCTC+AGG - chr1_3:56248680-56248699 Msa0127030:CDS 45.0%
CTTAGACAAACCTGCAATGC+TGG + chr1_3:56248940-56248959 None:intergenic 45.0%
!! TGTTGGTGTCATGCAGAAGA+AGG - chr1_3:56249047-56249066 Msa0127030:CDS 45.0%
TATGGCGTTTGGCAGAAGAA+TGG + chr1_3:56249327-56249346 None:intergenic 45.0%
GCAATCAAGTCTATGGCGTT+TGG + chr1_3:56249338-56249357 None:intergenic 45.0%
AGTCCATGTCTTGAAGTCAG+AGG - chr1_3:56249372-56249391 Msa0127030:CDS 45.0%
ATGCCTCTGACTTCAAGACA+TGG + chr1_3:56249378-56249397 None:intergenic 45.0%
GTGCATCAAGGTGACAAACA+TGG + chr1_3:56249460-56249479 None:intergenic 45.0%
TGTCGGCAGTACATAAGTTC+AGG + chr1_3:56249512-56249531 None:intergenic 45.0%
TGAACTTATGTACTGCCGAC+AGG - chr1_3:56249511-56249530 Msa0127030:intron 45.0%
GAGCCAGTATTATCTCAGTG+AGG + chr1_3:56249571-56249590 None:intergenic 45.0%
TCTGGCGTCAGTACATTTCT+TGG - chr1_3:56249716-56249735 Msa0127030:intron 45.0%
CTGGCGTCAGTACATTTCTT+GGG - chr1_3:56249717-56249736 Msa0127030:intron 45.0%
!!! CCACGCATTTTTTAGGTGTG+GGG - chr1_3:56249750-56249769 Msa0127030:intron 45.0%
!!! CACGCATTTTTTAGGTGTGG+GGG - chr1_3:56249751-56249770 Msa0127030:intron 45.0%
!!! CATTTTTTAGGTGTGGGGGT+GGG - chr1_3:56249755-56249774 Msa0127030:intron 45.0%
TCAACCTTCCTGATCCTAAC+TGG - chr1_3:56249788-56249807 Msa0127030:intron 45.0%
CAACCTTCCTGATCCTAACT+GGG - chr1_3:56249789-56249808 Msa0127030:intron 45.0%
ATTCCCAGTTAGGATCAGGA+AGG + chr1_3:56249795-56249814 None:intergenic 45.0%
GGAAATTCCCAGTTAGGATC+AGG + chr1_3:56249799-56249818 None:intergenic 45.0%
ACATTACTGTTGCATGCTGC+TGG - chr1_3:56249955-56249974 Msa0127030:intron 45.0%
GCTGCTGGCAACATTCAAAA+TGG - chr1_3:56249970-56249989 Msa0127030:intron 45.0%
GCTGGCAACATTCAAAATGG+TGG - chr1_3:56249973-56249992 Msa0127030:intron 45.0%
TGCCAGAGCAAACACAATAG+TGG + chr1_3:56250249-56250268 None:intergenic 45.0%
! AGTCAAAGGTTTAGCTCGCT+TGG - chr1_3:56250746-56250765 Msa0127030:CDS 45.0%
!! TAAACCAAGATTGGCCTGCA+GGG + chr1_3:56250951-56250970 None:intergenic 45.0%
!! ATAAACCAAGATTGGCCTGC+AGG + chr1_3:56250952-56250971 None:intergenic 45.0%
GTAGCCAAATCACAAGCAGA+AGG - chr1_3:56250983-56251002 Msa0127030:intron 45.0%
GGAATGCTTATCACGAAGTG+TGG - chr1_3:56251231-56251250 Msa0127030:intron 45.0%
GCTTATCACGAAGTGTGGAT+TGG - chr1_3:56251236-56251255 Msa0127030:intron 45.0%
! ACTGTGTGAGTATTGCTGAC+TGG - chr1_3:56251506-56251525 Msa0127030:CDS 45.0%
! CTGTGTGAGTATTGCTGACT+GGG - chr1_3:56251507-56251526 Msa0127030:CDS 45.0%
GGTGAATAAGGAGACACTTG+GGG + chr1_3:56251640-56251659 None:intergenic 45.0%
GGGTGAATAAGGAGACACTT+GGG + chr1_3:56251641-56251660 None:intergenic 45.0%
GACGATGGTATGTGATAGCA+AGG + chr1_3:56251740-56251759 None:intergenic 45.0%
CCCTTTCAATGCTTTGACGA+TGG + chr1_3:56251755-56251774 None:intergenic 45.0%
TTTCTGGGTCTAGCTGAAGA+AGG + chr1_3:56252012-56252031 None:intergenic 45.0%
AGAAGGTTGTGCAGGTTTCT+GGG + chr1_3:56252027-56252046 None:intergenic 45.0%
TAGAAGGTTGTGCAGGTTTC+TGG + chr1_3:56252028-56252047 None:intergenic 45.0%
ATGTGGATAGAAGGTTGTGC+AGG + chr1_3:56252035-56252054 None:intergenic 45.0%
!! CTGTTGGTGATGTGGATAGA+AGG + chr1_3:56252044-56252063 None:intergenic 45.0%
AGGGGTTGGAGGAGAATTTA+GGG + chr1_3:56252071-56252090 None:intergenic 45.0%
GTTAGTGAGATGTTGAGGAG+GGG + chr1_3:56252089-56252108 None:intergenic 45.0%
TGGATGAAGAAGAATGGGTC+AGG + chr1_3:56252223-56252242 None:intergenic 45.0%
GATGAGAAATTGGAGGTCCT+AGG + chr1_3:56252372-56252391 None:intergenic 45.0%
GCTAAGGGATGAGAAATTGG+AGG + chr1_3:56252379-56252398 None:intergenic 45.0%
!! GCTCAACTGGTTTGAGCTAA+GGG + chr1_3:56252394-56252413 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+AGG + chr1_3:56252395-56252414 None:intergenic 45.0%
CATGTCAGAATCTCTGTCCT+CGG - chr1_3:56252497-56252516 Msa0127030:intron 45.0%
CATCACAACAGCTAGTAGTC+AGG + chr1_3:56252533-56252552 None:intergenic 45.0%
GACTACTAGCTGTTGTGATG+AGG - chr1_3:56252533-56252552 Msa0127030:intron 45.0%
CGTTGTGTGAAGTTCTGTTG+AGG - chr1_3:56252578-56252597 Msa0127030:intron 45.0%
TGTGTGAAGTTCTGTTGAGG+GGG - chr1_3:56252581-56252600 Msa0127030:intron 45.0%
TGGGGGAGGAATTAACAAGA+CGG - chr1_3:56252693-56252712 Msa0127030:intron 45.0%
ATTAACAAGACGGAAGTGGG+TGG - chr1_3:56252703-56252722 Msa0127030:intron 45.0%
TTAACAAGACGGAAGTGGGT+GGG - chr1_3:56252704-56252723 Msa0127030:intron 45.0%
TCGAGACACCACAAACTTGA+GGG + chr1_3:56252758-56252777 None:intergenic 45.0%
AGTTTGTGGTGTCTCGAGTT+TGG - chr1_3:56252761-56252780 Msa0127030:CDS 45.0%
!! AGTTTGGCTCTCATCAAGTG+TGG - chr1_3:56252777-56252796 Msa0127030:CDS 45.0%
TGGAACAGCAAGAGAGAAGA+AGG + chr1_3:56252814-56252833 None:intergenic 45.0%
GTGGAGTGATGTGTGTCTAA+TGG - chr1_3:56252922-56252941 Msa0127030:CDS 45.0%
GTGATGTGTGTCTAATGGCA+AGG - chr1_3:56252927-56252946 Msa0127030:CDS 45.0%
AGTGCCACATCTGCACAAAT+TGG - chr1_3:56253107-56253126 Msa0127030:CDS 45.0%
AGATCAAGGAACGGAAAGAG+AGG - chr1_3:56253331-56253350 Msa0127030:CDS 45.0%
GCAAAGTAGACGGAACCATA+TGG - chr1_3:56253877-56253896 Msa0127030:intron 45.0%
!! GATTTTGATAGAGACAGCGC+CGG - chr1_3:56253911-56253930 Msa0127030:intron 45.0%
CAGGTATTCTGCATCACTAC+CGG + chr1_3:56253933-56253952 None:intergenic 45.0%
!!! CGGCAAGACAATTTTTAGCG+GGG - chr1_3:56253955-56253974 Msa0127030:intron 45.0%
!!! GGCAAGACAATTTTTAGCGG+GGG - chr1_3:56253956-56253975 Msa0127030:intron 45.0%
AGTCTCATCTTGGACCTAGA+TGG + chr1_3:56254274-56254293 None:intergenic 45.0%
GATTCGTCAGATAAGTGCTC+AGG + chr1_3:56254310-56254329 None:intergenic 45.0%
!! AGCCACTTGATTTGCTTGAC+CGG - chr1_3:56254338-56254357 Msa0127030:intron 45.0%
GTTTGATCATCCGTGAGGAA+GGG - chr1_3:56254449-56254468 Msa0127030:intron 45.0%
TTTGATCATCCGTGAGGAAG+GGG - chr1_3:56254450-56254469 Msa0127030:intron 45.0%
GCATCATAGTCTGAATCAGC+TGG + chr1_3:56254493-56254512 None:intergenic 45.0%
AGTCATTTGTCTGCAAGGTC+CGG - chr1_3:56254529-56254548 Msa0127030:intron 45.0%
TATGCTAGCAGAAAAGCTGG+TGG - chr1_3:56254622-56254641 Msa0127030:CDS 45.0%
GTAGCAGATTGATAGAGCCA+TGG - chr1_3:56254867-56254886 Msa0127030:CDS 45.0%
!!! TTTTGAATTATATTATATTA+TGG - chr1_3:56246663-56246682 Msa0127030:intron 5.0%
!! TATTATTATTATTATTTGTA+TGG - chr1_3:56246915-56246934 Msa0127030:CDS 5.0%
!!! TATTTTAAAAGAATAATTAA+AGG + chr1_3:56251560-56251579 None:intergenic 5.0%
!! ACAGAGGTGTTGGTGGTTTG+CGG + chr1_3:56243060-56243079 None:intergenic 50.0%
! CTGTGACATTGCACCGATGA+CGG + chr1_3:56243084-56243103 None:intergenic 50.0%
ATGCGACAGGTGAAGAAGAG+AGG + chr1_3:56243124-56243143 None:intergenic 50.0%
GATTAGGTTCCTGTGCGATG+CGG + chr1_3:56243175-56243194 None:intergenic 50.0%
AGTTCCCGTTGCTGTGTTGA+AGG - chr1_3:56243250-56243269 Msa0127030:CDS 50.0%
TTGCCATCGAGTTTGGAGAG+TGG - chr1_3:56243317-56243336 Msa0127030:CDS 50.0%
ACACCACTCTCCAAACTCGA+TGG + chr1_3:56243323-56243342 None:intergenic 50.0%
GACCAACCGACCAATGATGA+TGG + chr1_3:56244023-56244042 None:intergenic 50.0%
TCTGAGTTAGAGCGCAAGAC+AGG - chr1_3:56244141-56244160 Msa0127030:intron 50.0%
GAAAGGTTTCTACTGCTGGC+CGG - chr1_3:56244438-56244457 Msa0127030:intron 50.0%
GTTATGCGCCTTGTGACTAG+GGG + chr1_3:56244648-56244667 None:intergenic 50.0%
CGTTATGCGCCTTGTGACTA+GGG + chr1_3:56244649-56244668 None:intergenic 50.0%
CCTAGTCACAAGGCGCATAA+CGG - chr1_3:56244647-56244666 Msa0127030:intron 50.0%
ACACCTCAAGTAGTGCTTCG+GGG + chr1_3:56244716-56244735 None:intergenic 50.0%
CATGCATGGAGAGTCAAAGG+GGG - chr1_3:56245504-56245523 Msa0127030:intron 50.0%
GGAGACTTGGAGACAAGTCT+TGG - chr1_3:56245543-56245562 Msa0127030:intron 50.0%
GGCCATCTGGGTGATTCAAA+TGG - chr1_3:56245732-56245751 Msa0127030:intron 50.0%
!! GTATGGAACAGAGTGTTGGG+CGG - chr1_3:56245846-56245865 Msa0127030:intron 50.0%
! CCAGCCTTATCCCACTAAGT+GGG + chr1_3:56246232-56246251 None:intergenic 50.0%
! ACCAGCCTTATCCCACTAAG+TGG + chr1_3:56246233-56246252 None:intergenic 50.0%
TTGCAACAAGAGCTGACCCA+AGG + chr1_3:56247149-56247168 None:intergenic 50.0%
TGGGTCAGCTCTTGTTGCAA+TGG - chr1_3:56247149-56247168 Msa0127030:CDS 50.0%
GGGTCAGCTCTTGTTGCAAT+GGG - chr1_3:56247150-56247169 Msa0127030:CDS 50.0%
GATTGAACGAGCAAGGGAGA+AGG - chr1_3:56247314-56247333 Msa0127030:intron 50.0%
AGCAAGGGAGAAGGCTCAAA+AGG - chr1_3:56247323-56247342 Msa0127030:intron 50.0%
GAAAGCTGAAACGTGCACAC+TGG + chr1_3:56247983-56248002 None:intergenic 50.0%
! CTCACCAGTTGCCAGCATTT+TGG - chr1_3:56248029-56248048 Msa0127030:intron 50.0%
TGTGGGCTTGCAGAGCTTAT+TGG - chr1_3:56248214-56248233 Msa0127030:intron 50.0%
! TTTCTTTTCATCCCAGGGCG+CGG - chr1_3:56248839-56248858 Msa0127030:intron 50.0%
TTCGCAGCTTCATTGTTGCC+TGG - chr1_3:56248871-56248890 Msa0127030:intron 50.0%
GATATGTAGCGCTCCTTGCA+AGG - chr1_3:56248959-56248978 Msa0127030:intron 50.0%
! GCGCTCCTTGCAAGGAATTT+TGG - chr1_3:56248967-56248986 Msa0127030:intron 50.0%
TCGAAGCTTGAGGTTCTGCT+TGG - chr1_3:56249277-56249296 Msa0127030:intron 50.0%
CGAAGCTTGAGGTTCTGCTT+GGG - chr1_3:56249278-56249297 Msa0127030:intron 50.0%
TGAGGTTCTGCTTGGGCTTA+TGG - chr1_3:56249285-56249304 Msa0127030:CDS 50.0%
CGTTTGGCAGAAGAATGGCA+AGG + chr1_3:56249322-56249341 None:intergenic 50.0%
AGTGAGGAAAACTTCTGGCC+AGG + chr1_3:56249555-56249574 None:intergenic 50.0%
!! TGGCTCTGCTCGGTTTTATC+TGG - chr1_3:56249698-56249717 Msa0127030:intron 50.0%
CCCCACACCTAAAAAATGCG+TGG + chr1_3:56249753-56249772 None:intergenic 50.0%
!!! GCATTTTTTAGGTGTGGGGG+TGG - chr1_3:56249754-56249773 Msa0127030:intron 50.0%
GCACACTGGGTAAGGCAATT+AGG - chr1_3:56249867-56249886 Msa0127030:intron 50.0%
AGGTTCACAGCGTGTGAACA+TGG + chr1_3:56249896-56249915 None:intergenic 50.0%
TGTAGAGAACACCCGCTTGA+TGG + chr1_3:56250044-56250063 None:intergenic 50.0%
GGCCACTATTGTGTTTGCTC+TGG - chr1_3:56250244-56250263 Msa0127030:CDS 50.0%
CTCCTCGTCTACAAGTGCAT+GGG + chr1_3:56250485-56250504 None:intergenic 50.0%
TCTCCTCGTCTACAAGTGCA+TGG + chr1_3:56250486-56250505 None:intergenic 50.0%
TTGTAGACGAGGAGAGAGGT+GGG - chr1_3:56250491-56250510 Msa0127030:CDS 50.0%
TTGTGAGCTAAGGTTGCTCG+CGG - chr1_3:56250687-56250706 Msa0127030:CDS 50.0%
TCCATCCACATTTGTCCTGC+TGG - chr1_3:56250812-56250831 Msa0127030:CDS 50.0%
TCCAGCAGGACAAATGTGGA+TGG + chr1_3:56250816-56250835 None:intergenic 50.0%
AATACCTGTCTTCTCCCTGC+AGG - chr1_3:56250934-56250953 Msa0127030:intron 50.0%
GGGGTGAATAAGGAGACACT+TGG + chr1_3:56251642-56251661 None:intergenic 50.0%
! CTCTTTCAAGTGCCCAGATC+TGG + chr1_3:56251806-56251825 None:intergenic 50.0%
GAGAATTTAGGGGCTGCTGT+TGG + chr1_3:56252060-56252079 None:intergenic 50.0%
GGGGTTGGAGGAGAATTTAG+GGG + chr1_3:56252070-56252089 None:intergenic 50.0%
GAGGGGTTGGAGGAGAATTT+AGG + chr1_3:56252072-56252091 None:intergenic 50.0%
TAGGGTTCAAACCCAGACGA+AGG + chr1_3:56252353-56252372 None:intergenic 50.0%
TTCGTCTGGGTTTGAACCCT+AGG - chr1_3:56252352-56252371 Msa0127030:intron 50.0%
CTTAAAAAGGCTTGGGGGGT+TGG + chr1_3:56252420-56252439 None:intergenic 50.0%
AGTCAGGAACTGTGATTCCG+AGG + chr1_3:56252517-56252536 None:intergenic 50.0%
TTGTGATGAGGGCGAAGATC+AGG - chr1_3:56252545-56252564 Msa0127030:intron 50.0%
GTGTGAAGTTCTGTTGAGGG+GGG - chr1_3:56252582-56252601 Msa0127030:intron 50.0%
TGTGAAGTTCTGTTGAGGGG+GGG - chr1_3:56252583-56252602 Msa0127030:intron 50.0%
! GGTTAAGGAGCGTGAAGCAA+TGG - chr1_3:56252610-56252629 Msa0127030:intron 50.0%
GAGCGTGAAGCAATGGAGAT+GGG - chr1_3:56252617-56252636 Msa0127030:intron 50.0%
AGCGTGAAGCAATGGAGATG+GGG - chr1_3:56252618-56252637 Msa0127030:intron 50.0%
!! GGAAGGTACCCTCAAGTTTG+TGG - chr1_3:56252747-56252766 Msa0127030:intron 50.0%
CTCGAGACACCACAAACTTG+AGG + chr1_3:56252759-56252778 None:intergenic 50.0%
GTGGTCAATCTTTGCTGACG+TGG + chr1_3:56253149-56253168 None:intergenic 50.0%
CGTCTTGCACTTAGATGCAG+TGG - chr1_3:56253497-56253516 Msa0127030:CDS 50.0%
!! CACTGCTGATTTGAGATGCG+TGG + chr1_3:56253990-56254009 None:intergenic 50.0%
CTGGATGACTCATCACAGGA+TGG + chr1_3:56254190-56254209 None:intergenic 50.0%
!! GGTTCTGGATGACTCATCAC+AGG + chr1_3:56254194-56254213 None:intergenic 50.0%
TGCCGGTCAAGCAAATCAAG+TGG + chr1_3:56254343-56254362 None:intergenic 50.0%
TGCTTGACCGGCAGAAAGTA+AGG - chr1_3:56254350-56254369 Msa0127030:intron 50.0%
GAGCAGACCTTACTTTCTGC+CGG + chr1_3:56254360-56254379 None:intergenic 50.0%
GTCAAGGTCAGACGATGATG+AGG - chr1_3:56254405-56254424 Msa0127030:intron 50.0%
AAGGTCAGACGATGATGAGG+TGG - chr1_3:56254408-56254427 Msa0127030:intron 50.0%
GAGGTGGAGGTAGATTCTGA+AGG - chr1_3:56254424-56254443 Msa0127030:intron 50.0%
AGGACGTTTGATCATCCGTG+AGG - chr1_3:56254444-56254463 Msa0127030:intron 50.0%
CGTTTGATCATCCGTGAGGA+AGG - chr1_3:56254448-56254467 Msa0127030:intron 50.0%
TCGTTTGTTCCCCTTCCTCA+CGG + chr1_3:56254462-56254481 None:intergenic 50.0%
TCTGCAAGGTCCGGAACTAA+AGG - chr1_3:56254538-56254557 Msa0127030:intron 50.0%
! TCGCTTCTGGCCTTTAGTTC+CGG + chr1_3:56254551-56254570 None:intergenic 50.0%
CTGCTGTTCTTCTTCGCTTC+TGG + chr1_3:56254564-56254583 None:intergenic 50.0%
AAGAACAGCAGAGCCTGGTA+GGG - chr1_3:56254573-56254592 Msa0127030:CDS 50.0%
!! CTTGAAGGCAAGAGTGTCTC+TGG - chr1_3:56254778-56254797 Msa0127030:CDS 50.0%
CAACACCTCTGTGCCGTCAT+CGG - chr1_3:56243068-56243087 Msa0127030:three_prime_UTR 55.0%
CGTCATCGGTGCAATGTCAC+AGG - chr1_3:56243082-56243101 Msa0127030:three_prime_UTR 55.0%
! AGTGCGTCGATGAGGTGGAT+AGG + chr1_3:56243200-56243219 None:intergenic 55.0%
TGAATTGTGGGGGCAAGGGA+CGG - chr1_3:56244259-56244278 Msa0127030:intron 55.0%
TGGGTCAACCCCTAGTCACA+AGG - chr1_3:56244637-56244656 Msa0127030:intron 55.0%
CCGTTATGCGCCTTGTGACT+AGG + chr1_3:56244650-56244669 None:intergenic 55.0%
! GTCACAAGGCGCATAACGGA+TGG - chr1_3:56244651-56244670 Msa0127030:intron 55.0%
CGGGGGAAACTTCCGATGTT+GGG + chr1_3:56244698-56244717 None:intergenic 55.0%
TCGGGGGAAACTTCCGATGT+TGG + chr1_3:56244699-56244718 None:intergenic 55.0%
! TTCCCCCGAAGCACTACTTG+AGG - chr1_3:56244710-56244729 Msa0127030:intron 55.0%
CACCTCAAGTAGTGCTTCGG+GGG + chr1_3:56244715-56244734 None:intergenic 55.0%
ACTGCTCGCTTGCTTGATGC+TGG - chr1_3:56244798-56244817 Msa0127030:intron 55.0%
TGCCTCTGTGGCTGCAAGTA+TGG + chr1_3:56245015-56245034 None:intergenic 55.0%
CATGCTCTTGAGTGCCTCTG+TGG + chr1_3:56245027-56245046 None:intergenic 55.0%
!! TGAATGGGGCGTTGGAGACT+TGG - chr1_3:56245530-56245549 Msa0127030:intron 55.0%
! GCTTAGGTGGTTTGGGCATG+TGG - chr1_3:56246018-56246037 Msa0127030:intron 55.0%
CCCACTTAGTGGGATAAGGC+TGG - chr1_3:56246229-56246248 Msa0127030:intron 55.0%
TTGGGGCATATGGTCCTGCT+GGG + chr1_3:56246595-56246614 None:intergenic 55.0%
ATTGGGGCATATGGTCCTGC+TGG + chr1_3:56246596-56246615 None:intergenic 55.0%
TGCAGCTTCATGCGTGCCTT+GGG - chr1_3:56247130-56247149 Msa0127030:CDS 55.0%
AAATCAAGAAGCCGCGCCCT+GGG + chr1_3:56248853-56248872 None:intergenic 55.0%
!! TCGCCATCGACTCATCCTGT+CGG + chr1_3:56249529-56249548 None:intergenic 55.0%
ACAGGATGAGTCGATGGCGA+TGG - chr1_3:56249529-56249548 Msa0127030:intron 55.0%
TGCCCATGCACTTGTAGACG+AGG - chr1_3:56250480-56250499 Msa0127030:CDS 55.0%
GCACTTGTAGACGAGGAGAG+AGG - chr1_3:56250487-56250506 Msa0127030:CDS 55.0%
CTTGTAGACGAGGAGAGAGG+TGG - chr1_3:56250490-56250509 Msa0127030:CDS 55.0%
TTCTCCCTGCAGGCCAATCT+TGG - chr1_3:56250944-56250963 Msa0127030:intron 55.0%
GCAAATGCATCTGAGGAGCG+TGG - chr1_3:56251009-56251028 Msa0127030:intron 55.0%
AGATGTTGAGGAGGGGTTGG+AGG + chr1_3:56252082-56252101 None:intergenic 55.0%
GTGAGATGTTGAGGAGGGGT+TGG + chr1_3:56252085-56252104 None:intergenic 55.0%
TTGAGGGGGGGTGAAGGTTA+AGG - chr1_3:56252595-56252614 Msa0127030:intron 55.0%
GGAGCGTGAAGCAATGGAGA+TGG - chr1_3:56252616-56252635 Msa0127030:intron 55.0%
AATGTAGGCTGCGATGCGTG+TGG - chr1_3:56252673-56252692 Msa0127030:intron 55.0%
ATGTAGGCTGCGATGCGTGT+GGG - chr1_3:56252674-56252693 Msa0127030:intron 55.0%
!! TCATCAAGTGTGGTGCTGCC+TGG - chr1_3:56252787-56252806 Msa0127030:CDS 55.0%
!! CATCAAGTGTGGTGCTGCCT+GGG - chr1_3:56252788-56252807 Msa0127030:CDS 55.0%
AGCAAGAGAGAAGAAGGCCC+AGG + chr1_3:56252808-56252827 None:intergenic 55.0%
GAACGGAAAGAGAGGAACCG+AGG - chr1_3:56253339-56253358 Msa0127030:CDS 55.0%
GTCAGACGATGATGAGGTGG+AGG - chr1_3:56254411-56254430 Msa0127030:intron 55.0%
CGAAGAAGAACAGCAGAGCC+TGG - chr1_3:56254568-56254587 Msa0127030:CDS 55.0%
GAAGAACAGCAGAGCCTGGT+AGG - chr1_3:56254572-56254591 Msa0127030:CDS 55.0%
TGGTAGGGCTTACACTGGGA+AGG - chr1_3:56254597-56254616 Msa0127030:CDS 55.0%
GGCTGCGGCAAGAAAAGGTT+TGG - chr1_3:56254729-56254748 Msa0127030:CDS 55.0%
!! GAGGTGTTGGTGGTTTGCGG+CGG + chr1_3:56243057-56243076 None:intergenic 60.0%
!! TGACGGCACAGAGGTGTTGG+TGG + chr1_3:56243067-56243086 None:intergenic 60.0%
! CGATGACGGCACAGAGGTGT+TGG + chr1_3:56243070-56243089 None:intergenic 60.0%
! TTGCACCGATGACGGCACAG+AGG + chr1_3:56243076-56243095 None:intergenic 60.0%
! GTGGCGCAGAAGTATGCGAC+AGG + chr1_3:56243137-56243156 None:intergenic 60.0%
TTCCTGTGCGATGCGGTCCA+GGG + chr1_3:56243168-56243187 None:intergenic 60.0%
! GCGTCGATGAGGTGGATAGG+TGG + chr1_3:56243197-56243216 None:intergenic 60.0%
AGGTTTCTACTGCTGGCCGG+TGG - chr1_3:56244441-56244460 Msa0127030:intron 60.0%
GGCCATACTTGCAGCCACAG+AGG - chr1_3:56245010-56245029 Msa0127030:intron 60.0%
GGGGGAATTGAATGGGGCGT+TGG - chr1_3:56245522-56245541 Msa0127030:intron 60.0%
GTGCAGCTTCATGCGTGCCT+TGG - chr1_3:56247129-56247148 Msa0127030:CDS 60.0%
GAAATCAAGAAGCCGCGCCC+TGG + chr1_3:56248854-56248873 None:intergenic 60.0%
CTGCCGACAGGATGAGTCGA+TGG - chr1_3:56249523-56249542 Msa0127030:intron 60.0%
ATGAGTCGATGGCGATGGCC+TGG - chr1_3:56249534-56249553 Msa0127030:intron 60.0%
! AAGGTTGCTCGCGGCCTTGT+TGG - chr1_3:56250696-56250715 Msa0127030:CDS 60.0%
!! AGGTTGCTCGCGGCCTTGTT+GGG - chr1_3:56250697-56250716 Msa0127030:CDS 60.0%
TTGGCCTGCAGGGAGAAGAC+AGG + chr1_3:56250941-56250960 None:intergenic 60.0%
!! AGGGGCTGCTGTTGGTGATG+TGG + chr1_3:56252052-56252071 None:intergenic 60.0%
GGGGGGTTGGATAGCTCAAC+TGG + chr1_3:56252407-56252426 None:intergenic 60.0%
GATGAGGGCGAAGATCAGGC+TGG - chr1_3:56252549-56252568 Msa0127030:intron 60.0%
GTTCTGTTGAGGGGGGGTGA+AGG - chr1_3:56252589-56252608 Msa0127030:intron 60.0%
TGCGCACACGCATCATAGCG+AGG - chr1_3:56252643-56252662 Msa0127030:intron 60.0%
TGTAGGCTGCGATGCGTGTG+GGG - chr1_3:56252675-56252694 Msa0127030:intron 60.0%
! AGAGCCTGGTAGGGCTGGTA+GGG - chr1_3:56254582-56254601 Msa0127030:CDS 60.0%
TAAGCCCTACCAGCCCTACC+AGG + chr1_3:56254589-56254608 None:intergenic 60.0%
! AGGGCTGGTAGGGCTTACAC+TGG - chr1_3:56254592-56254611 Msa0127030:CDS 60.0%
! GGGCTGGTAGGGCTTACACT+GGG - chr1_3:56254593-56254612 Msa0127030:CDS 60.0%
TGAGTCGTCGGCCACAGCAA+CGG - chr1_3:56254707-56254726 Msa0127030:CDS 60.0%
!! CAACGGGCTGCGGCAAGAAA+AGG - chr1_3:56254724-56254743 Msa0127030:CDS 60.0%
!! GTGTTGGTGGTTTGCGGCGG+TGG + chr1_3:56243054-56243073 None:intergenic 65.0%
CTGCGCCACATGCTCATCCC+TGG - chr1_3:56243148-56243167 Msa0127030:CDS 65.0%
GCGGTCCAGGGATGAGCATG+TGG + chr1_3:56243156-56243175 None:intergenic 65.0%
ATCCCTGGACCGCATCGCAC+AGG - chr1_3:56243163-56243182 Msa0127030:CDS 65.0%
GTTCCTGTGCGATGCGGTCC+AGG + chr1_3:56243169-56243188 None:intergenic 65.0%
GGCAAGGGACGGCTGTAGCA+AGG - chr1_3:56244270-56244289 Msa0127030:intron 65.0%
GGCGAAGATCAGGCTGGCGA+TGG - chr1_3:56252555-56252574 Msa0127030:intron 65.0%
GTAGGCTGCGATGCGTGTGG+GGG - chr1_3:56252676-56252695 Msa0127030:intron 65.0%
ACAGCAGAGCCTGGTAGGGC+TGG - chr1_3:56254577-56254596 Msa0127030:CDS 65.0%
! CAGAGCCTGGTAGGGCTGGT+AGG - chr1_3:56254581-56254600 Msa0127030:CDS 65.0%
GAGTCGTCGGCCACAGCAAC+GGG - chr1_3:56254708-56254727 Msa0127030:CDS 65.0%
!! TCGGCCACAGCAACGGGCTG+CGG - chr1_3:56254714-56254733 Msa0127030:CDS 70.0%
CTTGCCGCAGCCCGTTGCTG+TGG + chr1_3:56254721-56254740 None:intergenic 70.0%
GGCTGCGATGCGTGTGGGGG+AGG - chr1_3:56252679-56252698 Msa0127030:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56242963 56255022 56242963 ID=Msa0127030;Name=Msa0127030
chr1_3 mRNA 56242963 56255022 56242963 ID=Msa0127030-mRNA-1;Parent=Msa0127030;Name=Msa0127030-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.87|0.88|1|1|1|17|152|1255
chr1_3 exon 56242963 56243706 56242963 ID=Msa0127030-mRNA-1:exon:17707;Parent=Msa0127030-mRNA-1
chr1_3 exon 56243965 56244108 56243965 ID=Msa0127030-mRNA-1:exon:17706;Parent=Msa0127030-mRNA-1
chr1_3 exon 56244573 56244652 56244573 ID=Msa0127030-mRNA-1:exon:17705;Parent=Msa0127030-mRNA-1
chr1_3 exon 56246901 56247029 56246901 ID=Msa0127030-mRNA-1:exon:17704;Parent=Msa0127030-mRNA-1
chr1_3 exon 56247125 56247286 56247125 ID=Msa0127030-mRNA-1:exon:17703;Parent=Msa0127030-mRNA-1
chr1_3 exon 56247439 56247552 56247439 ID=Msa0127030-mRNA-1:exon:17702;Parent=Msa0127030-mRNA-1
chr1_3 exon 56248387 56248452 56248387 ID=Msa0127030-mRNA-1:exon:17701;Parent=Msa0127030-mRNA-1
chr1_3 exon 56248553 56248729 56248553 ID=Msa0127030-mRNA-1:exon:17700;Parent=Msa0127030-mRNA-1
chr1_3 exon 56248887 56248940 56248887 ID=Msa0127030-mRNA-1:exon:17699;Parent=Msa0127030-mRNA-1
chr1_3 exon 56249037 56249130 56249037 ID=Msa0127030-mRNA-1:exon:17698;Parent=Msa0127030-mRNA-1
chr1_3 exon 56249284 56249453 56249284 ID=Msa0127030-mRNA-1:exon:17697;Parent=Msa0127030-mRNA-1
chr1_3 exon 56250174 56250563 56250174 ID=Msa0127030-mRNA-1:exon:17696;Parent=Msa0127030-mRNA-1
chr1_3 exon 56250641 56250850 56250641 ID=Msa0127030-mRNA-1:exon:17695;Parent=Msa0127030-mRNA-1
chr1_3 exon 56251489 56251580 56251489 ID=Msa0127030-mRNA-1:exon:17694;Parent=Msa0127030-mRNA-1
chr1_3 exon 56252749 56253000 56252749 ID=Msa0127030-mRNA-1:exon:17693;Parent=Msa0127030-mRNA-1
chr1_3 exon 56253091 56253665 56253091 ID=Msa0127030-mRNA-1:exon:17692;Parent=Msa0127030-mRNA-1
chr1_3 exon 56254556 56255022 56254556 ID=Msa0127030-mRNA-1:exon:17691;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56254556 56255022 56254556 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56253091 56253665 56253091 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56252749 56253000 56252749 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56251489 56251580 56251489 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56250641 56250850 56250641 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56250174 56250563 56250174 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56249284 56249453 56249284 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56249037 56249130 56249037 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56248887 56248940 56248887 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56248553 56248729 56248553 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56248387 56248452 56248387 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56247439 56247552 56247439 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56247125 56247286 56247125 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56246901 56247029 56246901 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56244573 56244652 56244573 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56243965 56244108 56243965 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 CDS 56243115 56243706 56243115 ID=Msa0127030-mRNA-1:cds;Parent=Msa0127030-mRNA-1
chr1_3 three_prime_UTR 56242963 56243114 56242963 ID=Msa0127030-mRNA-1:three_prime_utr;Parent=Msa0127030-mRNA-1
Gene Sequence

>Msa0127030

ATGGAAGAAGTCGAAATGGAGGAATCAACATTCAGCAACGAATCCAACGATGATATATGCAATTCAATTCTCTCTCGTTTCTCAAACTCCACCGCCGCAAACCACCAACACCTCTGTGCCGTCATCGGTGCAATGTCACAGGAACTCAAAGATCACAGCCTCTCTTCTTCACCTGTCGCATACTTCTGCGCCACATGCTCATCCCTGGACCGCATCGCACAGGAACCTAATCCACCTATCCACCTCATCGACGCACTTTTAACAATTCTCTCGATTGTTATCGTTAAAGTTCCCGTTGCTGTGTTGAAGGAGAAGAGAGAGTTTCTATCGGAGCTTGTTGCGAAAGTTGTTATGTTGCCATCGAGTTTGGAGAGTGGTGTTGTTCATGGATTGAAATGTGTTTCACATTTGTTGATTCATAGGGATAGTGTTCATTGGTCTGATGTATCGACATTGTTCAATTTCTTACTGGTTCTCTTCCAACAGGTAAGAAGGCAATCTCATTTGTGTCTCCGCAATGTCTTGATAAACTTTCAAAATTCTTCGCTATTAGCATCTGCAAGTGAAGGGGTCAAAAACCTACTTGAAAGGTTTCTACTGCTGGCCGGTGGAGCAAATGCAAATGATGATGATGGAACTAAGGGAGCAAATGAAAACGATGGTGATGGAACTAAGGGAGCCCAACAAGTTTTGTATATTCTTGATGCCTTGAAAGAATGCCTTCCTTTCTTGTCTCTAAAATACAAGACCAACATTCTTAACCACTTCAAAACTCTTTTAAATATGGGTCAACCCCTAGTCACAAGGCGCATAACGGATGGTTTAAATTTTCTCTGTCTTAACCCAACATCGGAAGTTTCCCCCGAAGCACTACTTGAGGTGTTATGCACATTATCATATCTTTCTACCTCATCAACTGAGATTTCTGGAGATGGTATGACATTTACTGCTCGCTTGCTTGATGCTGGAATGAAGAAAGTTTTTTCTCTAAACAGGCAAATGTGTGTAATTAAGCTTCCTAGTGTCTTTAATGATCTCAAAGATATTTTGGCATCTGAACATGAAGAGGCCATACTTGCAGCCACAGAGGCACTCAAGAGCATGATCAACTATTGCATTGATGAAAGTTTGATTAAACAGGGAGTGGATCAGATAACTTTGGATGAATCAAGGATGTCAGGACCAACCATTATTGAGAAAATTTGTGTAACTCTTGAGAGCCTACTTGATTATCACTATGCTGCTTCTTGGGATAGAGTATTTGAAGTTGTTTCCTCTATGTTTCACAAATTAGGAAGTAACTCTCCTTACTTTATGAGAGGTATACTCAAAAACATGGAAGATATGCAGCAGCTGCCTGATGAAAATTTTCCCTTTAGGAAACAGCTTCATGCGTGCCTTGGGTCAGCTCTTGTTGCAATGGGACCCGAAACTTTTTTATCCCTTATACCATTAAATTTGGAAGCTGAAGATTTATCCGTCTCAAATAAATGGCTTTTTCCAATTCTAAAACAGTATATTGTTGGTGTGCGTCTAAAATATTTTACAGAGGAAATTTTGCCTATGATTGAACGAGCAAGGGAGAAGGCTCAAAAGCTTGAGAAGCAAGAACTGATGAAAGCAGACACACTTGTTTACTCTTTGTGGTCTTTGCTGCCTTCATTTTGTAACTATCCTTCAGACACAGCTAAAAGTTTCAAGGATCTTGAAAAACATTTACGTAGTAAACTAAAAGAAGAACCTAATATTCGTGGAATAATATGCACTAGTTTGCAGCTTCTGATTAGACAAAACAAGAACATTCAGGATTCAAATGATAAGGATTATAGTAGGCAAGATATGGCCAAAGAACAAGTCTTGTATAATTACTCGCAACAGGTTGCAACAGAAAATTTGAGGGCACTGGAGATATCTGCCAATAATTTGTTGAAAGATCTGTCAGACGTGTTCCTGAAATCTACAAAAGATGATGGTGGTTGTTTGCAGGGTACAATCGGTGATATTGCTTCTATAGCAGACAAAAAAGTTGTGCAAAACTTATTTAAGAAGAAAATGTCGGATCTCTTAAAATGCACTCAAAATGCCAACAAAGTAGACGATTCAGAAAGCTCTATGCAGATTGATACACCAAATGACGTGTCTCAATCAGTTCTCAGGGCGCGGCTTCTTGATTTCGCAGCTTCATTGTTGCCTGGATTAGATGCGAAAGATATTGATTTATTATTTCAAGTAATAAAGCCAGCATTGCAGGATGTTGGTGTCATGCAGAAGAAGGCATACAAAGTTCTTTTGATCATGCTCAAGAGCTCAGACAGTTTTGTTTCATCGAAGCTTGAGGTTCTGCTTGGGCTTATGGTTGAAATTCTTCCTTGCCATTCTTCTGCCAAACGCCATAGACTTGATTGCCTTTATTTATTGATAGTCCATGTCTTGAAGTCAGAGGCATTCAAAGACGAGTTCCTTTACTTATTAAAATCAAAGGATGAGTCGATGGCGATGGCCTGGCCAGAAGTTTTCCTCACTGAGATAATACTGGCTCTAAAGGAGGCTAATAAAAAAACCAGGAACAGGGCTTATGAAATTCTGGTCGAAATTGCCCATGCACTTGTAGACGAGGAGAGAGGTGGGAACAGAAATAACCTCTATCAATTTTTTATCATGGTTGCTCGCGGCCTTGTTGGGAAAACTCCACATATGATAAGTGCAACAGTCAAAGGTTTAGCTCGCTTGGCTTATGAGTTCTCTGATCTTGTTTTAACTGCTTTTGATTTGCTTCCATCCACATTTGTCCTGCTGGAAAAAAAGAACAAAGAGATTACCAAGGCCAATCTTGGTTTATTAAAGGTTTTAGTAGCCAAATCACAAGCAGAAGGATTGCAAATGCATCTGAGGAGCGTGGTTGAGTGTTTGTTTAAGTGGCAAGATGATGCCAAAAATCATTTTAAAGCAAAGATCAAGGAACGGAAAGAGAGGAACCGAGGTGCTAAATCTGAAGAAACTAGGTCTCATGTTTCAAAAGCAACTACATCCAGGCAAAGTAGACGGAACCATATGGATATTTTTTCAGATTTTGATAGAGACAGCGCCGGTAGTGATGCAGAATACCTGAACGGCAAGACAATTTTTAGCGGGGGCAAATCTTCCACGCATCTCAAATCAGCAGTGTCTTCATTTGGGTCCAAGATGAGACTAAAAAACAATATTCCTGAGCACTTATCTGACGAATCAGATGACGAGCCACTTGATTTGCTTGACCGGCAGAAAGTAAGGTCTGCTCTTAGATCTGAGAATCTCAAAAGGAAGTCAAGGTCAGACGATGATGAGGTGGAGGTAGATTCTGAAGGACGTTTGATCATCCGTGAGGAAGGGGAACAAACGAAGAAAAAACCAGCTGATTCAGACTATGATGCTAGGAGTGAGCCTGATAGTCATTTGTCTGCAAGGTCCGGAACTAAAGGCCAGAAGCGAAGAAGAACAGCAGAGCCTGGTAGGGCTGGTAGGGCTTACACTGGGAAGGAATATGCTAGCAGAAAAGCTGGTGGAGATATTAAGAGGAAGGATAAGCTTGAACCTTATGCATATTGGCCACTTGATCGGAAAATGATGAGTCGTCGGCCACAGCAACGGGCTGCGGCAAGAAAAGGTTTGGCAACTGTGGTAAATATGACAAAAAGGCTTGAAGGCAAGAGTGTCTCTGGCATGCTTTCTATGAAGAGTATGAAACTAAAAAGAACTCAAAAGAAAGGCAGGAAGCAAAAGAAAATGTAG
Protein sequence

>Msa0127030

MEEVEMEESTFSNESNDDICNSILSRFSNSTAANHQHLCAVIGAMSQELKDHSLSSSPVAYFCATCSSLDRIAQEPNPPIHLIDALLTILSIVIVKVPVAVLKEKREFLSELVAKVVMLPSSLESGVVHGLKCVSHLLIHRDSVHWSDVSTLFNFLLVLFQQVRRQSHLCLRNVLINFQNSSLLASASEGVKNLLERFLLLAGGANANDDDGTKGANENDGDGTKGAQQVLYILDALKECLPFLSLKYKTNILNHFKTLLNMGQPLVTRRITDGLNFLCLNPTSEVSPEALLEVLCTLSYLSTSSTEISGDGMTFTARLLDAGMKKVFSLNRQMCVIKLPSVFNDLKDILASEHEEAILAATEALKSMINYCIDESLIKQGVDQITLDESRMSGPTIIEKICVTLESLLDYHYAASWDRVFEVVSSMFHKLGSNSPYFMRGILKNMEDMQQLPDENFPFRKQLHACLGSALVAMGPETFLSLIPLNLEAEDLSVSNKWLFPILKQYIVGVRLKYFTEEILPMIERAREKAQKLEKQELMKADTLVYSLWSLLPSFCNYPSDTAKSFKDLEKHLRSKLKEEPNIRGIICTSLQLLIRQNKNIQDSNDKDYSRQDMAKEQVLYNYSQQVATENLRALEISANNLLKDLSDVFLKSTKDDGGCLQGTIGDIASIADKKVVQNLFKKKMSDLLKCTQNANKVDDSESSMQIDTPNDVSQSVLRARLLDFAASLLPGLDAKDIDLLFQVIKPALQDVGVMQKKAYKVLLIMLKSSDSFVSSKLEVLLGLMVEILPCHSSAKRHRLDCLYLLIVHVLKSEAFKDEFLYLLKSKDESMAMAWPEVFLTEIILALKEANKKTRNRAYEILVEIAHALVDEERGGNRNNLYQFFIMVARGLVGKTPHMISATVKGLARLAYEFSDLVLTAFDLLPSTFVLLEKKNKEITKANLGLLKVLVAKSQAEGLQMHLRSVVECLFKWQDDAKNHFKAKIKERKERNRGAKSEETRSHVSKATTSRQSRRNHMDIFSDFDRDSAGSDAEYLNGKTIFSGGKSSTHLKSAVSSFGSKMRLKNNIPEHLSDESDDEPLDLLDRQKVRSALRSENLKRKSRSDDDEVEVDSEGRLIIREEGEQTKKKPADSDYDARSEPDSHLSARSGTKGQKRRRTAEPGRAGRAYTGKEYASRKAGGDIKRKDKLEPYAYWPLDRKMMSRRPQQRAAARKGLATVVNMTKRLEGKSVSGMLSMKSMKLKRTQKKGRKQKKM*