Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170450 | sp|Q940Y9|POLL2_ARATH | 64.569 | 731 | 228 | 8 | 129 | 836 | 95 | 817 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170450 | A0A072VLT4 | 92.649 | 857 | 40 | 5 | 1 | 836 | 1 | 855 | 0.0 | 1588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025090 | Msa0170450 | 0.802462 | 5.547033e-49 | -8.615850e-47 |
| Msa0026120 | Msa0170450 | 0.808587 | 2.878043e-50 | -8.615850e-47 |
| Msa0030320 | Msa0170450 | 0.891947 | 2.492267e-74 | -8.615850e-47 |
| Msa0060740 | Msa0170450 | 0.815612 | 8.456964e-52 | -8.615850e-47 |
| Msa0077920 | Msa0170450 | 0.937429 | 3.515875e-98 | -8.615850e-47 |
| Msa0086380 | Msa0170450 | 0.806185 | 9.300448e-50 | -8.615850e-47 |
| Msa0112800 | Msa0170450 | 0.809127 | 2.206154e-50 | -8.615850e-47 |
| Msa0125810 | Msa0170450 | 0.929512 | 6.249336e-93 | -8.615850e-47 |
| Msa0133190 | Msa0170450 | 0.807281 | 5.457442e-50 | -8.615850e-47 |
| Msa0151810 | Msa0170450 | 0.825715 | 4.029729e-54 | -8.615850e-47 |
| Msa0153290 | Msa0170450 | 0.802161 | 6.398199e-49 | -8.615850e-47 |
| Msa0153890 | Msa0170450 | 0.805006 | 1.643603e-49 | -8.615850e-47 |
| Msa0166580 | Msa0170450 | 0.816614 | 5.051078e-52 | -8.615850e-47 |
| Msa0170450 | Msa0241580 | 0.819873 | 9.238074e-53 | -8.615850e-47 |
| Msa0170450 | Msa0279490 | 0.818504 | 1.893450e-52 | -8.615850e-47 |
| Msa0170450 | Msa0357090 | 0.825192 | 5.359555e-54 | -8.615850e-47 |
| Msa0170450 | Msa0359230 | 0.800534 | 1.377821e-48 | -8.615850e-47 |
| Msa0170450 | Msa0452010 | 0.804161 | 2.467060e-49 | -8.615850e-47 |
| Msa0170450 | Msa0452680 | 0.829552 | 4.828160e-55 | -8.615850e-47 |
| Msa0170450 | Msa0597300 | 0.803439 | 3.484169e-49 | -8.615850e-47 |
| Msa0170450 | Msa0604130 | 0.841103 | 5.821883e-58 | -8.615850e-47 |
| Msa0170450 | Msa0636750 | 0.853211 | 2.776848e-61 | -8.615850e-47 |
| Msa0170450 | Msa0636760 | 0.858108 | 1.033069e-62 | -8.615850e-47 |
| Msa0170450 | Msa0639880 | 0.815943 | 7.132659e-52 | -8.615850e-47 |
| Msa0170450 | Msa0645460 | 0.825275 | 5.123003e-54 | -8.615850e-47 |
| Msa0170450 | Msa0684910 | 0.848513 | 5.844494e-60 | -8.615850e-47 |
| Msa0170450 | Msa0684920 | 0.853449 | 2.371630e-61 | -8.615850e-47 |
| Msa0170450 | Msa0752540 | 0.804659 | 1.942662e-49 | -8.615850e-47 |
| Msa0170450 | Msa0833080 | 0.817803 | 2.727980e-52 | -8.615850e-47 |
| Msa0170450 | Msa1018720 | 0.814139 | 1.793590e-51 | -8.615850e-47 |
| Msa0170450 | Msa1033670 | 0.807488 | 4.932937e-50 | -8.615850e-47 |
| Msa0170450 | Msa1147190 | 0.816219 | 6.190054e-52 | -8.615850e-47 |
| Msa0170450 | Msa1192790 | 0.816161 | 6.376597e-52 | -8.615850e-47 |
| Msa0170450 | Msa1244300 | 0.805492 | 1.300770e-49 | -8.615850e-47 |
| Msa0170450 | Msa1327400 | 0.815376 | 9.541844e-52 | -8.615850e-47 |
| Msa0170450 | Msa1327420 | 0.816712 | 4.800487e-52 | -8.615850e-47 |
| Msa0170450 | Msa1391600 | 0.807551 | 4.782595e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170450 | MtrunA17_Chr1g0188021 | 92.649 | 857 | 40 | 5 | 1 | 836 | 1 | 855 | 0.0 | 1588 |
| Msa0170450 | MtrunA17_Chr7g0276651 | 25.074 | 674 | 415 | 17 | 200 | 829 | 197 | 824 | 3.28e-52 | 196 |
| Msa0170450 | MtrunA17_Chr2g0277131 | 23.242 | 697 | 435 | 17 | 182 | 829 | 237 | 882 | 1.40e-47 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170450 | AT5G43745.1 | 64.569 | 731 | 228 | 8 | 129 | 836 | 95 | 817 | 0.0 | 946 |
| Msa0170450 | AT5G02940.1 | 60.875 | 754 | 251 | 10 | 106 | 836 | 81 | 813 | 0.0 | 892 |
| Msa0170450 | AT5G02940.2 | 59.202 | 777 | 250 | 11 | 106 | 836 | 81 | 836 | 0.0 | 879 |
| Msa0170450 | AT5G49960.1 | 23.946 | 664 | 408 | 16 | 210 | 826 | 208 | 821 | 6.90e-47 | 180 |
| Msa0170450 | AT5G49960.3 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 6.12e-36 | 145 |
| Msa0170450 | AT5G49960.2 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 1.08e-35 | 144 |
Find 182 sgRNAs with CRISPR-Local
Find 521 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAAATGGTTTCCTTTA+AGG | 0.073901 | 1_4:+54444144 | None:intergenic |
| CCAATGCAATAACCAAATTT+TGG | 0.106459 | 1_4:+54441943 | None:intergenic |
| TTTCTGAGAGAGCATATTTA+AGG | 0.151867 | 1_4:-54442225 | Msa0170450:CDS |
| GTACCATGACTGAACAATTT+AGG | 0.174550 | 1_4:-54447547 | Msa0170450:CDS |
| AGAAATTGTTGATTCAAAAT+TGG | 0.174597 | 1_4:-54443496 | Msa0170450:CDS |
| CATTAAATGACAGGATTATT+AGG | 0.177184 | 1_4:-54444335 | Msa0170450:CDS |
| CTAATAATCCTGTCATTTAA+TGG | 0.182682 | 1_4:+54444336 | None:intergenic |
| TCTGACAAAGATTGGCTTCT+TGG | 0.213550 | 1_4:-54444070 | Msa0170450:CDS |
| ACACGTATTGAGCGTGTTAT+TGG | 0.217615 | 1_4:-54447617 | Msa0170450:CDS |
| AATTATGCCGAGAATAATTT+AGG | 0.230970 | 1_4:-54441979 | Msa0170450:three_prime_UTR |
| TTCCTCTGTCCAAATGAAAT+TGG | 0.236075 | 1_4:+54449272 | None:intergenic |
| AGAGCATTGAACAAATAATT+TGG | 0.238735 | 1_4:+54445760 | None:intergenic |
| TTGGCTTTGTTCTTGCAATA+TGG | 0.244797 | 1_4:-54447598 | Msa0170450:CDS |
| TCTCTCCTTCTTTCATATAA+AGG | 0.245635 | 1_4:+54442266 | None:intergenic |
| CCTTCAACCAATTCCAGATA+TGG | 0.255524 | 1_4:-54445976 | Msa0170450:CDS |
| CATGGACTACGGCACCTTAA+AGG | 0.272237 | 1_4:-54444158 | Msa0170450:CDS |
| GAAATTGTTGATTCAAAATT+GGG | 0.277542 | 1_4:-54443495 | Msa0170450:CDS |
| TGCAGAATTTCATCATCATT+TGG | 0.285455 | 1_4:+54445153 | None:intergenic |
| TTCATTCAATTCACTATTCT+CGG | 0.286894 | 1_4:+54443195 | None:intergenic |
| CAAAATTTGGTTATTGCATT+GGG | 0.293948 | 1_4:-54441942 | Msa0170450:three_prime_UTR |
| ATAGTGAATTGAATGAAGTT+TGG | 0.306785 | 1_4:-54443189 | Msa0170450:CDS |
| CTGTTGTATGTGGTCTTTAC+CGG | 0.310048 | 1_4:-54445197 | Msa0170450:CDS |
| TGAAGTCTGAATATTCAAAA+TGG | 0.312714 | 1_4:+54444132 | None:intergenic |
| TACCATGACTGAACAATTTA+GGG | 0.322572 | 1_4:-54447546 | Msa0170450:intron |
| CCTCGTTAGGTATTGTTCAT+TGG | 0.325696 | 1_4:-54445035 | Msa0170450:intron |
| TGGCTTTGTTCTTGCAATAT+GGG | 0.327052 | 1_4:-54447597 | Msa0170450:CDS |
| AGGGGTTCTGACTTTGGAAT+TGG | 0.327626 | 1_4:+54442070 | None:intergenic |
| CTTGCATATCTGACAAAGAT+TGG | 0.330744 | 1_4:-54444078 | Msa0170450:CDS |
| GATATGCAAGCAATTGAAAA+AGG | 0.332048 | 1_4:+54444091 | None:intergenic |
| CTTCAACAAGTCACATGTTT+GGG | 0.332614 | 1_4:+54445826 | None:intergenic |
| AGTAAAAGAATGCATTCTTT+TGG | 0.333418 | 1_4:+54444727 | None:intergenic |
| GCAGAATTTCATCATCATTT+GGG | 0.346170 | 1_4:+54445154 | None:intergenic |
| ATTAAATGACAGGATTATTA+GGG | 0.346750 | 1_4:-54444334 | Msa0170450:CDS |
| TGCAGCTTGCCTGATCTTGA+AGG | 0.354653 | 1_4:-54445347 | Msa0170450:CDS |
| CCAAAATTTGGTTATTGCAT+TGG | 0.355193 | 1_4:-54441943 | Msa0170450:three_prime_UTR |
| ATGTTCACTATGTTCTGAAT+TGG | 0.356478 | 1_4:+54449314 | None:intergenic |
| TTAAATGTAAAATATGTAAA+TGG | 0.362555 | 1_4:-54441812 | Msa0170450:three_prime_UTR |
| CCACAAGTTATAACCACAAA+TGG | 0.365342 | 1_4:-54444990 | Msa0170450:CDS |
| GGGGTTCTGACTTTGGAATT+GGG | 0.367709 | 1_4:+54442071 | None:intergenic |
| TCTCGGTCCTGGAAGTGTTT+TGG | 0.368444 | 1_4:-54444656 | Msa0170450:intron |
| ACTTCAACAAGTCACATGTT+TGG | 0.378442 | 1_4:+54445825 | None:intergenic |
| ATGTGAGCACCAATTTCATT+TGG | 0.382678 | 1_4:-54449281 | Msa0170450:CDS |
| AGAATGTTCGAGTTTCTCAT+AGG | 0.392413 | 1_4:-54444284 | Msa0170450:CDS |
| CTTTAAGGTGCCGTAGTCCA+TGG | 0.393693 | 1_4:+54444159 | None:intergenic |
| AGAGAGAGGGGTTCTGACTT+TGG | 0.394255 | 1_4:+54442064 | None:intergenic |
| GTGGAGACAGAACCCATATC+TGG | 0.395837 | 1_4:+54445963 | None:intergenic |
| CTGACACATACAAAGTTTGT+TGG | 0.400547 | 1_4:-54448968 | Msa0170450:CDS |
| AAACATACCAAAACACTTCC+AGG | 0.411264 | 1_4:+54444649 | None:intergenic |
| ATTGATATATGTAGGTTTCA+AGG | 0.414000 | 1_4:-54445850 | Msa0170450:intron |
| ATAATTATACTGCCAGCAAA+AGG | 0.414426 | 1_4:-54446778 | Msa0170450:CDS |
| TATGTGGTCTTTACCGGAAT+GGG | 0.416645 | 1_4:-54445191 | Msa0170450:CDS |
| ACCGATCATATCATTATTTG+TGG | 0.426209 | 1_4:-54447402 | Msa0170450:CDS |
| CCATTTGTGGTTATAACTTG+TGG | 0.429550 | 1_4:+54444990 | None:intergenic |
| AGTGTCTCACAATTATTATA+AGG | 0.430018 | 1_4:+54450228 | None:intergenic |
| TTCCAAGAAAACAGATTGAT+AGG | 0.432088 | 1_4:-54447176 | Msa0170450:CDS |
| TTGGAAGATCAGACATAAGA+AGG | 0.434726 | 1_4:+54447193 | None:intergenic |
| TTGGATGCAACATCTTCTAC+TGG | 0.434987 | 1_4:+54445779 | None:intergenic |
| TTGAATCATTTCTACAACAT+CGG | 0.436367 | 1_4:+54444693 | None:intergenic |
| GTTCTTCTTCACATAACCTA+TGG | 0.436383 | 1_4:+54442192 | None:intergenic |
| AAGTGGCTTAGGTGTATTCA+AGG | 0.445370 | 1_4:+54448856 | None:intergenic |
| ACAGAACCCATATCTGGAAT+TGG | 0.446217 | 1_4:+54445969 | None:intergenic |
| ACGTCTAATTTAAGTGGCTT+AGG | 0.446496 | 1_4:+54448845 | None:intergenic |
| TGAATCATTTCTACAACATC+GGG | 0.447283 | 1_4:+54444694 | None:intergenic |
| ACACCAACAACAAGAATTCC+AGG | 0.447705 | 1_4:-54450083 | Msa0170450:intron |
| CTTCAACCAATTCCAGATAT+GGG | 0.456773 | 1_4:-54445975 | Msa0170450:CDS |
| CGAATACCACGCCTGTGTAA+TGG | 0.458509 | 1_4:+54449564 | None:intergenic |
| ACATGCACTCCTGTCTTCCA+TGG | 0.460579 | 1_4:-54450140 | Msa0170450:CDS |
| GGAAAATAATAGTAGCTCTC+AGG | 0.460845 | 1_4:-54449253 | Msa0170450:intron |
| TATTCAGACTTCATTGAAGA+AGG | 0.463327 | 1_4:-54444122 | Msa0170450:CDS |
| TTTAAGGTGCCGTAGTCCAT+GGG | 0.463795 | 1_4:+54444160 | None:intergenic |
| TTGTGCCCTGTCATATCAGC+TGG | 0.468222 | 1_4:-54449605 | Msa0170450:CDS |
| AGAGTAATATGCAAAGGCTC+AGG | 0.468992 | 1_4:-54447452 | Msa0170450:CDS |
| GACTTGTTGAAGTCAATCTC+GGG | 0.469582 | 1_4:-54445815 | Msa0170450:CDS |
| CCATATCTGGAATTGGTTGA+AGG | 0.469691 | 1_4:+54445976 | None:intergenic |
| TATGTCATTCCTTCAAGATC+AGG | 0.471383 | 1_4:+54445338 | None:intergenic |
| TTCTGTCTCCACAATAGTTG+AGG | 0.475729 | 1_4:-54445952 | Msa0170450:intron |
| TTATTTCAGGCTGTTGTATG+TGG | 0.479952 | 1_4:-54445207 | Msa0170450:intron |
| GTACCTGGAATTCTTGTTGT+TGG | 0.483183 | 1_4:+54450080 | None:intergenic |
| TCAGAAAGCTCGGAAAATGA+TGG | 0.485822 | 1_4:+54442241 | None:intergenic |
| ATTAGCCTTTATATGAAAGA+AGG | 0.487807 | 1_4:-54442271 | Msa0170450:CDS |
| GGCTTTGTTCTTGCAATATG+GGG | 0.488366 | 1_4:-54447596 | Msa0170450:CDS |
| AATGACCTTGAGCAGTTACA+AGG | 0.490244 | 1_4:+54443313 | None:intergenic |
| TATGAGAACTATCTCGGTCC+TGG | 0.491562 | 1_4:-54444667 | Msa0170450:CDS |
| CAGGAACAATAAACAATCAC+TGG | 0.493123 | 1_4:-54447814 | Msa0170450:CDS |
| GACTCTTGACGGAACAAGCT+TGG | 0.493689 | 1_4:-54448900 | Msa0170450:CDS |
| TTTAGCTGCTTTAATATGAA+AGG | 0.497921 | 1_4:+54447363 | None:intergenic |
| GTGGCTTATTAGTATTCTGA+AGG | 0.498207 | 1_4:+54445009 | None:intergenic |
| CAGAGACGCCATTAAATGAC+AGG | 0.499203 | 1_4:-54444344 | Msa0170450:CDS |
| GACAAAGATTGGCTTCTTGG+AGG | 0.500058 | 1_4:-54444067 | Msa0170450:CDS |
| CCTGTCATATCAGCTGGCTC+AGG | 0.500403 | 1_4:-54449599 | Msa0170450:CDS |
| TATTTCCTCCGCCGCAACAT+AGG | 0.501247 | 1_4:+54443341 | None:intergenic |
| ATTGATAGTCATATCTGAGC+TGG | 0.501789 | 1_4:-54442026 | Msa0170450:CDS |
| TCTGAATTGGAATTAAAAGC+TGG | 0.502397 | 1_4:+54449327 | None:intergenic |
| TATGTGCCTCAGACTCTTGA+CGG | 0.505688 | 1_4:-54448911 | Msa0170450:CDS |
| TAATTATACTGCCAGCAAAA+GGG | 0.507131 | 1_4:-54446777 | Msa0170450:CDS |
| AAGGACTTATAAAGATCTAC+AGG | 0.509152 | 1_4:-54445730 | Msa0170450:CDS |
| GTTTCTTGTTCTTCAAGCTA+AGG | 0.510347 | 1_4:-54448582 | Msa0170450:intron |
| CCTGAGCCAGCTGATATGAC+AGG | 0.511177 | 1_4:+54449599 | None:intergenic |
| TGACTTGTTGAAGTCAATCT+CGG | 0.511323 | 1_4:-54445816 | Msa0170450:CDS |
| CATCTAATATCATGAAAAGA+AGG | 0.511608 | 1_4:+54448815 | None:intergenic |
| CGGCATAATTACAAAATGAC+TGG | 0.513339 | 1_4:+54441992 | None:intergenic |
| CCTTGGAATCCATGGAAGAC+AGG | 0.513471 | 1_4:+54450131 | None:intergenic |
| AATTATTTGTTCAATGCTCT+CGG | 0.514496 | 1_4:-54445757 | Msa0170450:CDS |
| ATAACCACAAATGGGAAAGA+AGG | 0.514985 | 1_4:-54444981 | Msa0170450:CDS |
| GTAACGCGTCCTAACAGATC+TGG | 0.516914 | 1_4:-54444876 | Msa0170450:CDS |
| AAGGAGACGTCTAATTTAAG+TGG | 0.517014 | 1_4:+54448839 | None:intergenic |
| AGTGACCTATGTTGCGGCGG+AGG | 0.517374 | 1_4:-54443346 | Msa0170450:CDS |
| CACAAGTTATAACCACAAAT+GGG | 0.517797 | 1_4:-54444989 | Msa0170450:CDS |
| GCATGTGCTACAGGGTCGAC+AGG | 0.519355 | 1_4:-54449035 | Msa0170450:intron |
| GTTCAATGCTCTCGGCAGAA+AGG | 0.520032 | 1_4:-54445749 | Msa0170450:CDS |
| ATCTTGAAGGAATGACATAT+AGG | 0.524524 | 1_4:-54445334 | Msa0170450:CDS |
| GCACATATCGAACTATTGCT+TGG | 0.525302 | 1_4:+54448927 | None:intergenic |
| GTCAGTCAATTCAAGAGAGA+GGG | 0.525834 | 1_4:+54442051 | None:intergenic |
| TCTTACTTTACTCAATTCGA+TGG | 0.529133 | 1_4:+54444911 | None:intergenic |
| AATGGGAAAGAAGGAAAAGA+TGG | 0.536238 | 1_4:-54444972 | Msa0170450:CDS |
| AATTATACTGCCAGCAAAAG+GGG | 0.536630 | 1_4:-54446776 | Msa0170450:CDS |
| CAAGAGTATGAGAACTATCT+CGG | 0.537222 | 1_4:-54444673 | Msa0170450:CDS |
| TACCCTAAATTGTTCAGTCA+TGG | 0.537267 | 1_4:+54447544 | None:intergenic |
| CACGAGTTTGCTGTTCGCCT+AGG | 0.538803 | 1_4:-54447333 | Msa0170450:CDS |
| TTGAGCCTTGTAACTGCTCA+AGG | 0.539272 | 1_4:-54443318 | Msa0170450:intron |
| ATATGCTCTCTCAGAAAGCT+CGG | 0.542579 | 1_4:+54442231 | None:intergenic |
| ATCACCATTTAGGCAGCAGA+CGG | 0.544517 | 1_4:-54444760 | Msa0170450:intron |
| CCGATCATATCATTATTTGT+GGG | 0.545928 | 1_4:-54447401 | Msa0170450:CDS |
| GTGGAAGTGAGTGAGATTCA+TGG | 0.547458 | 1_4:+54450161 | None:intergenic |
| ATTATTAGGGAAAACATCGT+TGG | 0.550733 | 1_4:-54444321 | Msa0170450:CDS |
| CCTGTCTTCCATGGATTCCA+AGG | 0.554780 | 1_4:-54450131 | Msa0170450:CDS |
| TACTGCCAGCAAAAGGGGAT+CGG | 0.554950 | 1_4:-54446771 | Msa0170450:intron |
| ACCTTGGAACCAGATCTGTT+AGG | 0.555505 | 1_4:+54444867 | None:intergenic |
| ATGTAAACCCTGTAGGGAGA+TGG | 0.559911 | 1_4:-54449368 | Msa0170450:intron |
| CATATCTGGAATTGGTTGAA+GGG | 0.560971 | 1_4:+54445977 | None:intergenic |
| GTAACAAACCTCAACTATTG+TGG | 0.563433 | 1_4:+54445944 | None:intergenic |
| GTATGTGGTCTTTACCGGAA+TGG | 0.565150 | 1_4:-54445192 | Msa0170450:CDS |
| CACGAAATATTTGACTGACT+CGG | 0.565620 | 1_4:-54450253 | Msa0170450:five_prime_UTR |
| TATGTGTGCCTTGGAATCCA+TGG | 0.565777 | 1_4:+54450123 | None:intergenic |
| TTAAGGAGAGAAGTAGCCAT+AGG | 0.566286 | 1_4:-54442208 | Msa0170450:CDS |
| ATTGGAAACCCCATGGACTA+CGG | 0.567157 | 1_4:-54444169 | Msa0170450:CDS |
| GAATGTTCGAGTTTCTCATA+GGG | 0.567985 | 1_4:-54444283 | Msa0170450:intron |
| CACCAATTTCATTTGGACAG+AGG | 0.569663 | 1_4:-54449274 | Msa0170450:CDS |
| GGGAGCACAAATGCAAGTCA+TGG | 0.570238 | 1_4:-54447427 | Msa0170450:CDS |
| TAGGCAGCAGACGGGAATGT+AGG | 0.574180 | 1_4:-54444751 | Msa0170450:CDS |
| GATGAGCAGTATGTGTGCCT+TGG | 0.581395 | 1_4:+54450114 | None:intergenic |
| TCACCATTTAGGCAGCAGAC+GGG | 0.585510 | 1_4:-54444759 | Msa0170450:intron |
| CGCAACAGAGTAATATGCAA+AGG | 0.588880 | 1_4:-54447458 | Msa0170450:intron |
| AAATTGTTGATTCAAAATTG+GGG | 0.589912 | 1_4:-54443494 | Msa0170450:CDS |
| GAATTTCATCATCATTTGGG+TGG | 0.590474 | 1_4:+54445157 | None:intergenic |
| AATATCATGAAAAGAAGGCA+AGG | 0.592571 | 1_4:+54448820 | None:intergenic |
| TGCAACTCACCTTCAGTGTG+TGG | 0.593529 | 1_4:+54449540 | None:intergenic |
| TCCTAACAGATCTGGTTCCA+AGG | 0.594226 | 1_4:-54444868 | Msa0170450:intron |
| GAGTAATATGCAAAGGCTCA+GGG | 0.597688 | 1_4:-54447451 | Msa0170450:CDS |
| CCCACAAATAATGATATGAT+CGG | 0.599046 | 1_4:+54447401 | None:intergenic |
| AGTCAGTCAATTCAAGAGAG+AGG | 0.599157 | 1_4:+54442050 | None:intergenic |
| ACCTAGCTGAAGCAGTGCCT+AGG | 0.600093 | 1_4:+54447316 | None:intergenic |
| AAAATTTGGTTATTGCATTG+GGG | 0.600139 | 1_4:-54441941 | Msa0170450:three_prime_UTR |
| AGCGTCGATACCTCTTGCTA+AGG | 0.600603 | 1_4:+54447112 | None:intergenic |
| ATGGAAGACAGGAGTGCATG+TGG | 0.603280 | 1_4:+54450142 | None:intergenic |
| GCCGCAACATAGGTCACTGA+TGG | 0.603508 | 1_4:+54443351 | None:intergenic |
| CCACGCCTGTGTAATGGAGA+AGG | 0.603866 | 1_4:+54449570 | None:intergenic |
| GGGTGATGAAATATATGTGA+AGG | 0.604673 | 1_4:-54443146 | Msa0170450:intron |
| GCCATCAGTGACCTATGTTG+CGG | 0.607641 | 1_4:-54443352 | Msa0170450:CDS |
| TGGCTTATTAGTATTCTGAA+GGG | 0.612456 | 1_4:+54445010 | None:intergenic |
| TCTCACTCTGCTCCTAGTAG+TGG | 0.618226 | 1_4:+54450193 | None:intergenic |
| CTTGTTCCGTCAAGAGTCTG+AGG | 0.618450 | 1_4:+54448905 | None:intergenic |
| GAAAGACATACTAGATGCAG+AGG | 0.618766 | 1_4:-54443167 | Msa0170450:CDS |
| ATATTGATCTCCTTAGCAAG+AGG | 0.619450 | 1_4:-54447122 | Msa0170450:intron |
| ATCAGTGACCTATGTTGCGG+CGG | 0.620787 | 1_4:-54443349 | Msa0170450:CDS |
| AAACCCTGTAGGGAGATGGC+AGG | 0.622638 | 1_4:-54449364 | Msa0170450:intron |
| ACTATAGATTGGAAACCCCA+TGG | 0.633543 | 1_4:-54444176 | Msa0170450:intron |
| CCTTCTCCATTACACAGGCG+TGG | 0.637605 | 1_4:-54449570 | Msa0170450:CDS |
| TCAGTCAATTCAAGAGAGAG+GGG | 0.638151 | 1_4:+54442052 | None:intergenic |
| AAGTGAGTGAGATTCATGGC+TGG | 0.639373 | 1_4:+54450165 | None:intergenic |
| GGTATTCGACCACACACTGA+AGG | 0.641674 | 1_4:-54449549 | Msa0170450:intron |
| CTTCACCTTCTCCATTACAC+AGG | 0.646584 | 1_4:-54449575 | Msa0170450:CDS |
| CTGAGCCAGCTGATATGACA+GGG | 0.647653 | 1_4:+54449600 | None:intergenic |
| ATAGTCATATCTGAGCTGGA+AGG | 0.647720 | 1_4:-54442022 | Msa0170450:CDS |
| ATAACACGCTCAATACGTGT+TGG | 0.648660 | 1_4:+54447620 | None:intergenic |
| GCCTAGGCACTGCTTCAGCT+AGG | 0.650589 | 1_4:-54447317 | Msa0170450:intron |
| ATATTAGATGGAGCTTAGCG+CGG | 0.663174 | 1_4:-54448802 | Msa0170450:CDS |
| AATATGCAAAGGCTCAGGGA+GGG | 0.673017 | 1_4:-54447447 | Msa0170450:CDS |
| TAATATGCAAAGGCTCAGGG+AGG | 0.678347 | 1_4:-54447448 | Msa0170450:CDS |
| TTAAGGTGCCGTAGTCCATG+GGG | 0.678704 | 1_4:+54444161 | None:intergenic |
| ACTTGTTGAAGTCAATCTCG+GGG | 0.695230 | 1_4:-54445814 | Msa0170450:CDS |
| AAAGACATACTAGATGCAGA+GGG | 0.713150 | 1_4:-54443166 | Msa0170450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGATATAAATAATTTCT+TGG | + | chr1_4:54443966-54443985 | None:intergenic | 10.0% |
| !! | CATATGATTAATTTAATTAA+TGG | + | chr1_4:54445055-54445074 | None:intergenic | 10.0% |
| !!! | ATAAATTATTCATTCAATTT+TGG | - | chr1_4:54446454-54446473 | Msa0170450:intron | 10.0% |
| !! | CATTAATGTAAAATTATAAA+TGG | + | chr1_4:54446757-54446776 | None:intergenic | 10.0% |
| !!! | ATATTTTTATTATTGTTTTG+CGG | + | chr1_4:54447463-54447482 | None:intergenic | 10.0% |
| !!! | TAATATTTTTTTGTTATGAT+AGG | - | chr1_4:54448094-54448113 | Msa0170450:intron | 10.0% |
| !!! | TTTATTTTTTCTTATTATAC+AGG | - | chr1_4:54449705-54449724 | Msa0170450:intron | 10.0% |
| !!! | GTTTTATTTTGAATAATAAT+TGG | - | chr1_4:54449862-54449881 | Msa0170450:intron | 10.0% |
| !! | TTAAATGTAAAATATGTAAA+TGG | - | chr1_4:54450189-54450208 | Msa0170450:five_prime_UTR | 10.0% |
| !! | TCATTATCTGTTAAAAAATT+TGG | + | chr1_4:54442166-54442185 | None:intergenic | 15.0% |
| !!! | TTTTGAACATAAAACATTAA+AGG | + | chr1_4:54442871-54442890 | None:intergenic | 15.0% |
| !!! | TGTTCAAAATTCAAATATTT+TGG | - | chr1_4:54442882-54442901 | Msa0170450:intron | 15.0% |
| !! | ATTATTAAAATTGAATCTAG+TGG | - | chr1_4:54443990-54444009 | Msa0170450:intron | 15.0% |
| !!! | TTATATATGTTTGTTAATCT+GGG | - | chr1_4:54444148-54444167 | Msa0170450:CDS | 15.0% |
| !!! | TATATTTTTTTACTTTGCTT+AGG | - | chr1_4:54444963-54444982 | Msa0170450:CDS | 15.0% |
| !! | ATGTATATTTGAATAGAATA+AGG | - | chr1_4:54445004-54445023 | Msa0170450:CDS | 15.0% |
| !! | TGTATATTTGAATAGAATAA+GGG | - | chr1_4:54445005-54445024 | Msa0170450:CDS | 15.0% |
| !!! | AAATGATTTTGTTAAACTAA+GGG | + | chr1_4:54445173-54445192 | None:intergenic | 15.0% |
| !! | CAATTAAGAAAATTTCAAAT+AGG | + | chr1_4:54446135-54446154 | None:intergenic | 15.0% |
| !!! | TTTTCTTAATTGATATATGT+AGG | - | chr1_4:54446143-54446162 | Msa0170450:intron | 15.0% |
| !! | GTAAAAAAAATATTAAACAC+CGG | + | chr1_4:54446605-54446624 | None:intergenic | 15.0% |
| !! | CTATATATTGATATTATTTC+AGG | - | chr1_4:54446781-54446800 | Msa0170450:CDS | 15.0% |
| !! | CATTCCAAAAAATTTATATA+TGG | - | chr1_4:54449375-54449394 | Msa0170450:intron | 15.0% |
| !!! | CAAACCATATATAAATTTTT+TGG | + | chr1_4:54449382-54449401 | None:intergenic | 15.0% |
| !! | ATAAATCATGTTCAAATTTA+TGG | + | chr1_4:54449552-54449571 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTCAGAATAAAT+TGG | - | chr1_4:54450153-54450172 | Msa0170450:CDS | 15.0% |
| !! | ATCATTTCCATAATTTAGTT+GGG | + | chr1_4:54442019-54442038 | None:intergenic | 20.0% |
| !! | TATCATTTCCATAATTTAGT+TGG | + | chr1_4:54442020-54442039 | None:intergenic | 20.0% |
| !!! | AAGTTTATTGTTGTTTTCAA+TGG | - | chr1_4:54442225-54442244 | Msa0170450:CDS | 20.0% |
| !!! | AAAATGTACAAAAGTATTGA+TGG | - | chr1_4:54442797-54442816 | Msa0170450:intron | 20.0% |
| !! | AGAAAATTCCATTTACAATA+AGG | + | chr1_4:54443501-54443520 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCCTTTTTGTCA+AGG | + | chr1_4:54443538-54443557 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAGACAAATATCT+TGG | + | chr1_4:54443647-54443666 | None:intergenic | 20.0% |
| !! | AAATAATTTCTTGGAAACAT+GGG | + | chr1_4:54443957-54443976 | None:intergenic | 20.0% |
| !! | TAAATAATTTCTTGGAAACA+TGG | + | chr1_4:54443958-54443977 | None:intergenic | 20.0% |
| !!! | CTTATATATGTTTGTTAATC+TGG | - | chr1_4:54444147-54444166 | Msa0170450:CDS | 20.0% |
| !!! | TACTCATTTAAAAGTATGTT+CGG | - | chr1_4:54444253-54444272 | Msa0170450:intron | 20.0% |
| !!! | TTATTTTGGATTTCATAATC+TGG | - | chr1_4:54444277-54444296 | Msa0170450:intron | 20.0% |
| !! | CTAGGTAAATATTTCATAAA+AGG | - | chr1_4:54444702-54444721 | Msa0170450:CDS | 20.0% |
| !!! | AATAGTATTTTTACAAAAGC+CGG | + | chr1_4:54444939-54444958 | None:intergenic | 20.0% |
| !!! | CAAATGATTTTGTTAAACTA+AGG | + | chr1_4:54445174-54445193 | None:intergenic | 20.0% |
| !! | ATTAAATTAAATCGTACTCT+TGG | + | chr1_4:54445602-54445621 | None:intergenic | 20.0% |
| !! | TTTCATACCTAACAATATAA+AGG | + | chr1_4:54445974-54445993 | None:intergenic | 20.0% |
| !! | TAATAGAAAATCTAGGAAAT+AGG | + | chr1_4:54446362-54446381 | None:intergenic | 20.0% |
| !!! | ATTTCCTAGATTTTCTATTA+TGG | - | chr1_4:54446362-54446381 | Msa0170450:intron | 20.0% |
| !! | AATACCATAATAGAAAATCT+AGG | + | chr1_4:54446369-54446388 | None:intergenic | 20.0% |
| !!! | AAATCAATACAAGTTTTAAC+TGG | + | chr1_4:54446554-54446573 | None:intergenic | 20.0% |
| !! | TTTAGAAAATCCAAGATAAA+AGG | + | chr1_4:54446937-54446956 | None:intergenic | 20.0% |
| !! | TTGGAGATTATGTAATAATA+TGG | - | chr1_4:54447601-54447620 | Msa0170450:CDS | 20.0% |
| !! | ATTAAATGACAGGATTATTA+GGG | - | chr1_4:54447667-54447686 | Msa0170450:intron | 20.0% |
| !! | CAAAAAATTGTAACTGAAAA+TGG | - | chr1_4:54447967-54447986 | Msa0170450:intron | 20.0% |
| !! | AAGTTAGTAATATTTCCAAA+AGG | + | chr1_4:54448127-54448146 | None:intergenic | 20.0% |
| !! | TACTAACTTCTCTAAATATA+TGG | - | chr1_4:54448138-54448157 | Msa0170450:intron | 20.0% |
| !! | ATGTAGTTGAAATTTGAAAA+GGG | + | chr1_4:54448201-54448220 | None:intergenic | 20.0% |
| !! | AATGTAGTTGAAATTTGAAA+AGG | + | chr1_4:54448202-54448221 | None:intergenic | 20.0% |
| !! | GAAAAATATGTGACATAATT+AGG | + | chr1_4:54448248-54448267 | None:intergenic | 20.0% |
| !! | TCTATCATAGTATTTACTAT+AGG | + | chr1_4:54448276-54448295 | None:intergenic | 20.0% |
| !!! | AGAAATTGTTGATTCAAAAT+TGG | - | chr1_4:54448505-54448524 | Msa0170450:intron | 20.0% |
| !!! | GAAATTGTTGATTCAAAATT+GGG | - | chr1_4:54448506-54448525 | Msa0170450:intron | 20.0% |
| !!! | AAATTGTTGATTCAAAATTG+GGG | - | chr1_4:54448507-54448526 | Msa0170450:intron | 20.0% |
| !! | AGTCTCTTTGATAAATTATA+TGG | + | chr1_4:54449064-54449083 | None:intergenic | 20.0% |
| !!! | GAATTTTCCTAAATTATTCT+CGG | + | chr1_4:54450032-54450051 | None:intergenic | 20.0% |
| !!! | GTTGTTAACATTTTATTTTG+CGG | - | chr1_4:54450264-54450283 | Msa0170450:five_prime_UTR | 20.0% |
| ! | AGTGTCTCACAATTATTATA+AGG | + | chr1_4:54441776-54441795 | None:intergenic | 25.0% |
| ! | ATATTCACCCAACTAAATTA+TGG | - | chr1_4:54442009-54442028 | Msa0170450:CDS | 25.0% |
| !! | AGTCATGGTTCAAATTTTAT+AGG | - | chr1_4:54442084-54442103 | Msa0170450:intron | 25.0% |
| !! | GGTTCAAATTTTATAGGAAA+TGG | - | chr1_4:54442090-54442109 | Msa0170450:intron | 25.0% |
| ! | TTAATTAATGTAAACCCTGT+AGG | - | chr1_4:54442626-54442645 | Msa0170450:intron | 25.0% |
| ! | TAATTAATGTAAACCCTGTA+GGG | - | chr1_4:54442627-54442646 | Msa0170450:intron | 25.0% |
| !!! | ATTCAAATATTTTGGAGCAA+TGG | - | chr1_4:54442890-54442909 | Msa0170450:intron | 25.0% |
| ! | CATCTAATATCATGAAAAGA+AGG | + | chr1_4:54443189-54443208 | None:intergenic | 25.0% |
| !! | CTTCTTTTCATGATATTAGA+TGG | - | chr1_4:54443187-54443206 | Msa0170450:CDS | 25.0% |
| ! | TAATCACTTCATTGCTTATT+TGG | - | chr1_4:54443272-54443291 | Msa0170450:intron | 25.0% |
| ! | ATTAGAACTTATCTATCTAC+TGG | - | chr1_4:54443295-54443314 | Msa0170450:intron | 25.0% |
| !!! | GTTAACCTATTCTTATTTTG+TGG | - | chr1_4:54443472-54443491 | Msa0170450:intron | 25.0% |
| ! | TTGATATCATATACAACTTG+TGG | - | chr1_4:54443862-54443881 | Msa0170450:intron | 25.0% |
| ! | GTCTATATAAAACAACATCT+TGG | + | chr1_4:54443930-54443949 | None:intergenic | 25.0% |
| ! | CAGAAAAGAAAATAAAGAAG+GGG | + | chr1_4:54444023-54444042 | None:intergenic | 25.0% |
| ! | GCAGAAAAGAAAATAAAGAA+GGG | + | chr1_4:54444024-54444043 | None:intergenic | 25.0% |
| ! | AGCAGAAAAGAAAATAAAGA+AGG | + | chr1_4:54444025-54444044 | None:intergenic | 25.0% |
| !!! | CTTTATTTTCTTTTCTGCTT+TGG | - | chr1_4:54444026-54444045 | Msa0170450:intron | 25.0% |
| ! | GTTCCTGGATAATTTAATAA+TGG | + | chr1_4:54444174-54444193 | None:intergenic | 25.0% |
| !! | AAAGTATGTTCGGTTTATTT+TGG | - | chr1_4:54444263-54444282 | Msa0170450:intron | 25.0% |
| ! | GTGTTTATAAGCAATTTGAA+AGG | + | chr1_4:54444317-54444336 | None:intergenic | 25.0% |
| ! | GCACAGAAATATATTGTTTA+AGG | + | chr1_4:54444504-54444523 | None:intergenic | 25.0% |
| !! | TTTAGCTGCTTTAATATGAA+AGG | + | chr1_4:54444641-54444660 | None:intergenic | 25.0% |
| ! | AAGCAGAAATTTCAATTATG+AGG | + | chr1_4:54445140-54445159 | None:intergenic | 25.0% |
| ! | TGATCTACTTAAATTGCTAA+TGG | - | chr1_4:54445260-54445279 | Msa0170450:intron | 25.0% |
| ! | ACTTAAATTGCTAATGGTAT+AGG | - | chr1_4:54445266-54445285 | Msa0170450:intron | 25.0% |
| !! | TTTATTATTGAAAGTGTGTG+AGG | - | chr1_4:54445337-54445356 | Msa0170450:CDS | 25.0% |
| !! | TTATTATTGAAAGTGTGTGA+GGG | - | chr1_4:54445338-54445357 | Msa0170450:CDS | 25.0% |
| !!! | TTGTTATGGAGATTTTAGAA+TGG | - | chr1_4:54445461-54445480 | Msa0170450:intron | 25.0% |
| !!! | TGTTATGGAGATTTTAGAAT+GGG | - | chr1_4:54445462-54445481 | Msa0170450:intron | 25.0% |
| ! | GAATTACTAATCTGAATGAT+TGG | - | chr1_4:54445518-54445537 | Msa0170450:intron | 25.0% |
| ! | TACATATTAACTCATACTCA+TGG | + | chr1_4:54445547-54445566 | None:intergenic | 25.0% |
| ! | ATGAGTATGAGTTAATATGT+AGG | - | chr1_4:54445546-54445565 | Msa0170450:intron | 25.0% |
| ! | AGATCATTAGTCCTAATTAT+TGG | - | chr1_4:54445635-54445654 | Msa0170450:intron | 25.0% |
| ! | GATCATTAGTCCTAATTATT+GGG | - | chr1_4:54445636-54445655 | Msa0170450:intron | 25.0% |
| ! | CTAAAAAGTAATAGAAGCTA+CGG | + | chr1_4:54445703-54445722 | None:intergenic | 25.0% |
| ! | ATTCTGAATTCACTTTGATA+AGG | - | chr1_4:54445932-54445951 | Msa0170450:intron | 25.0% |
| ! | TTCAGATCCTTTATATTGTT+AGG | - | chr1_4:54445964-54445983 | Msa0170450:CDS | 25.0% |
| ! | ATTGATATATGTAGGTTTCA+AGG | - | chr1_4:54446151-54446170 | Msa0170450:intron | 25.0% |
| !!! | AGAGCATTGAACAAATAATT+TGG | + | chr1_4:54446244-54446263 | None:intergenic | 25.0% |
| ! | AATTATTTGTTCAATGCTCT+CGG | - | chr1_4:54446244-54446263 | Msa0170450:intron | 25.0% |
| !!! | TATTCATTCAATTTTGGTAC+CGG | - | chr1_4:54446460-54446479 | Msa0170450:intron | 25.0% |
| !!! | TAAATTCATTTTTCCTCGTT+AGG | - | chr1_4:54446953-54446972 | Msa0170450:intron | 25.0% |
| ! | TAAATGGTGATAAGTGATAA+AGG | + | chr1_4:54447232-54447251 | None:intergenic | 25.0% |
| ! | TTTATCACTTATCACCATTT+AGG | - | chr1_4:54447231-54447250 | Msa0170450:intron | 25.0% |
| !! | AGTAAAAGAATGCATTCTTT+TGG | + | chr1_4:54447277-54447296 | None:intergenic | 25.0% |
| !! | AAAGAATGCATTCTTTTACT+TGG | - | chr1_4:54447277-54447296 | Msa0170450:intron | 25.0% |
| !! | AAGAATGCATTCTTTTACTT+GGG | - | chr1_4:54447278-54447297 | Msa0170450:intron | 25.0% |
| ! | TTGAATCATTTCTACAACAT+CGG | + | chr1_4:54447311-54447330 | None:intergenic | 25.0% |
| !! | TTTGGTATGTTTATGTGTTT+TGG | - | chr1_4:54447363-54447382 | Msa0170450:CDS | 25.0% |
| ! | AAACTTCCTGCATATTATTA+TGG | + | chr1_4:54447634-54447653 | None:intergenic | 25.0% |
| !! | CTAATAATCCTGTCATTTAA+TGG | + | chr1_4:54447668-54447687 | None:intergenic | 25.0% |
| ! | CATTAAATGACAGGATTATT+AGG | - | chr1_4:54447666-54447685 | Msa0170450:intron | 25.0% |
| !! | TTCTTTTGGATACTATAGAT+TGG | - | chr1_4:54447814-54447833 | Msa0170450:CDS | 25.0% |
| ! | ATTCAAAATGGTTTCCTTTA+AGG | + | chr1_4:54447860-54447879 | None:intergenic | 25.0% |
| ! | TGAAGTCTGAATATTCAAAA+TGG | + | chr1_4:54447872-54447891 | None:intergenic | 25.0% |
| !!! | ATGATAGGATTTTTTCCTTT+TGG | - | chr1_4:54448109-54448128 | Msa0170450:intron | 25.0% |
| !!! | AAGTAAGTCTTTTGTTGTTT+TGG | - | chr1_4:54448534-54448553 | Msa0170450:intron | 25.0% |
| !!! | AGTAAGTCTTTTGTTGTTTT+GGG | - | chr1_4:54448535-54448554 | Msa0170450:intron | 25.0% |
| !!! | ATTGTAGAATGTTTTGATGA+TGG | - | chr1_4:54448582-54448601 | Msa0170450:intron | 25.0% |
| ! | TTCATTCAATTCACTATTCT+CGG | + | chr1_4:54448809-54448828 | None:intergenic | 25.0% |
| ! | ATAGTGAATTGAATGAAGTT+TGG | - | chr1_4:54448812-54448831 | Msa0170450:CDS | 25.0% |
| ! | CATGAATTTGATAAACCTTA+CGG | - | chr1_4:54449002-54449021 | Msa0170450:CDS | 25.0% |
| ! | TATCATTTATTCATTCCGTA+AGG | + | chr1_4:54449020-54449039 | None:intergenic | 25.0% |
| !! | AAATGAGTCTTGACTATTTT+GGG | + | chr1_4:54449091-54449110 | None:intergenic | 25.0% |
| !!! | ATTAGCCTTTATATGAAAGA+AGG | - | chr1_4:54449730-54449749 | Msa0170450:intron | 25.0% |
| ! | AATTATGCCGAGAATAATTT+AGG | - | chr1_4:54450022-54450041 | Msa0170450:intron | 25.0% |
| !! | AATGCAATAACCAAATTTTG+GGG | + | chr1_4:54450059-54450078 | None:intergenic | 25.0% |
| !! | CAATGCAATAACCAAATTTT+GGG | + | chr1_4:54450060-54450079 | None:intergenic | 25.0% |
| ! | CAAAATTTGGTTATTGCATT+GGG | - | chr1_4:54450059-54450078 | Msa0170450:intron | 25.0% |
| ! | AAAATTTGGTTATTGCATTG+GGG | - | chr1_4:54450060-54450079 | Msa0170450:intron | 25.0% |
| !!! | TTTTGTTTTTGTCCACTACT+AGG | - | chr1_4:54441796-54441815 | Msa0170450:three_prime_UTR | 30.0% |
| CTCAGCAATAGTTGAATAAT+GGG | + | chr1_4:54442291-54442310 | None:intergenic | 30.0% | |
| TGAATCAAGAGAAAAGACTA+CGG | - | chr1_4:54442484-54442503 | Msa0170450:intron | 30.0% | |
| ATATGTCATAGGAAACGATA+AGG | + | chr1_4:54442534-54442553 | None:intergenic | 30.0% | |
| GTACGAATGAACAATCAAAT+CGG | + | chr1_4:54442592-54442611 | None:intergenic | 30.0% | |
| TCTGAATTGGAATTAAAAGC+TGG | + | chr1_4:54442677-54442696 | None:intergenic | 30.0% | |
| ! | ATGTTCACTATGTTCTGAAT+TGG | + | chr1_4:54442690-54442709 | None:intergenic | 30.0% |
| GCACTGAATACAAAGAAAAT+AGG | + | chr1_4:54442836-54442855 | None:intergenic | 30.0% | |
| AATATCATGAAAAGAAGGCA+AGG | + | chr1_4:54443184-54443203 | None:intergenic | 30.0% | |
| AATGAAGTGATTAACTTACG+TGG | + | chr1_4:54443265-54443284 | None:intergenic | 30.0% | |
| ! | GAAATCTTCCAGATTCTTTT+TGG | - | chr1_4:54443357-54443376 | Msa0170450:CDS | 30.0% |
| GGAAACCACAAAATAAGAAT+AGG | + | chr1_4:54443480-54443499 | None:intergenic | 30.0% | |
| TGTGGTTTCCTTATTGTAAA+TGG | - | chr1_4:54443490-54443509 | Msa0170450:CDS | 30.0% | |
| !!! | TCTTGGATTTTTTGCTCAAT+GGG | + | chr1_4:54443913-54443932 | None:intergenic | 30.0% |
| !!! | ATCTTGGATTTTTTGCTCAA+TGG | + | chr1_4:54443914-54443933 | None:intergenic | 30.0% |
| ! | AATCACTGGAAGAATGTTTT+TGG | - | chr1_4:54444201-54444220 | Msa0170450:intron | 30.0% |
| ! | ATCACTGGAAGAATGTTTTT+GGG | - | chr1_4:54444202-54444221 | Msa0170450:intron | 30.0% |
| TACCATGACTGAACAATTTA+GGG | - | chr1_4:54444455-54444474 | Msa0170450:intron | 30.0% | |
| ACCGATCATATCATTATTTG+TGG | - | chr1_4:54444599-54444618 | Msa0170450:intron | 30.0% | |
| CCCACAAATAATGATATGAT+CGG | + | chr1_4:54444603-54444622 | None:intergenic | 30.0% | |
| CCGATCATATCATTATTTGT+GGG | - | chr1_4:54444600-54444619 | Msa0170450:intron | 30.0% | |
| AAACACAAGATGAAGGAAAT+TGG | + | chr1_4:54444734-54444753 | None:intergenic | 30.0% | |
| TTCCAAGAAAACAGATTGAT+AGG | - | chr1_4:54444825-54444844 | Msa0170450:intron | 30.0% | |
| ! | ATCCTATCAATCTGTTTTCT+TGG | + | chr1_4:54444830-54444849 | None:intergenic | 30.0% |
| ! | ATTTCCTTCTTTTGTCAAAC+CGG | - | chr1_4:54444917-54444936 | Msa0170450:CDS | 30.0% |
| ATAATTATACTGCCAGCAAA+AGG | - | chr1_4:54445223-54445242 | Msa0170450:intron | 30.0% | |
| TAATTATACTGCCAGCAAAA+GGG | - | chr1_4:54445224-54445243 | Msa0170450:intron | 30.0% | |
| TCAAGTGATTTCAGTTCAAA+CGG | + | chr1_4:54445303-54445322 | None:intergenic | 30.0% | |
| TCACTAACATCTAAGTCATA+GGG | - | chr1_4:54445399-54445418 | Msa0170450:intron | 30.0% | |
| !!! | GTTATGGAGATTTTAGAATG+GGG | - | chr1_4:54445463-54445482 | Msa0170450:intron | 30.0% |
| !!! | TTATGGAGATTTTAGAATGG+GGG | - | chr1_4:54445464-54445483 | Msa0170450:intron | 30.0% |
| AGTTAATATGTAGGAGAATC+TGG | - | chr1_4:54445555-54445574 | Msa0170450:intron | 30.0% | |
| TAAATCCTGTCCCAATAATT+AGG | + | chr1_4:54445649-54445668 | None:intergenic | 30.0% | |
| AAGGACTTATAAAGATCTAC+AGG | - | chr1_4:54446271-54446290 | Msa0170450:intron | 30.0% | |
| ! | CTGAAGTAGATTGAGATTTT+TGG | - | chr1_4:54446513-54446532 | Msa0170450:intron | 30.0% |
| ATCTTGAAGGAATGACATAT+AGG | - | chr1_4:54446667-54446686 | Msa0170450:intron | 30.0% | |
| GCAGAATTTCATCATCATTT+GGG | + | chr1_4:54446850-54446869 | None:intergenic | 30.0% | |
| TGCAGAATTTCATCATCATT+TGG | + | chr1_4:54446851-54446870 | None:intergenic | 30.0% | |
| TGGCTTATTAGTATTCTGAA+GGG | + | chr1_4:54446994-54447013 | None:intergenic | 30.0% | |
| CACAAGTTATAACCACAAAT+GGG | - | chr1_4:54447012-54447031 | Msa0170450:intron | 30.0% | |
| TCTTACTTTACTCAATTCGA+TGG | + | chr1_4:54447093-54447112 | None:intergenic | 30.0% | |
| TGAATCATTTCTACAACATC+GGG | + | chr1_4:54447310-54447329 | None:intergenic | 30.0% | |
| TATACACTCACAAAAATGTG+TGG | + | chr1_4:54447402-54447421 | None:intergenic | 30.0% | |
| ! | GAAGACTGATTAAGGTTTTA+TGG | + | chr1_4:54447432-54447451 | None:intergenic | 30.0% |
| AACATAAGTATCTAAGTGGT+AGG | + | chr1_4:54447533-54447552 | None:intergenic | 30.0% | |
| CAGTAACATAAGTATCTAAG+TGG | + | chr1_4:54447537-54447556 | None:intergenic | 30.0% | |
| CACTTAGATACTTATGTTAC+TGG | - | chr1_4:54447535-54447554 | Msa0170450:intron | 30.0% | |
| GATACTTATGTTACTGGTAT+AGG | - | chr1_4:54447541-54447560 | Msa0170450:intron | 30.0% | |
| TTCTGACCATAATAATATGC+AGG | - | chr1_4:54447625-54447644 | Msa0170450:CDS | 30.0% | |
| ATTATTAGGGAAAACATCGT+TGG | - | chr1_4:54447680-54447699 | Msa0170450:intron | 30.0% | |
| ! | ATATGATCTTGTGCTTCTTT+TGG | - | chr1_4:54447800-54447819 | Msa0170450:CDS | 30.0% |
| TATTCAGACTTCATTGAAGA+AGG | - | chr1_4:54447879-54447898 | Msa0170450:intron | 30.0% | |
| GATATGCAAGCAATTGAAAA+AGG | + | chr1_4:54447913-54447932 | None:intergenic | 30.0% | |
| GACAAGAAAAAATCTCAAGA+GGG | + | chr1_4:54448164-54448183 | None:intergenic | 30.0% | |
| ! | GAAAAGGGTCTTATAAAAAG+AGG | + | chr1_4:54448186-54448205 | None:intergenic | 30.0% |
| ! | TGACATAATTAGGAGTATGT+TGG | + | chr1_4:54448238-54448257 | None:intergenic | 30.0% |
| TACTCTTCATGAGAGAAAAT+TGG | + | chr1_4:54448309-54448328 | None:intergenic | 30.0% | |
| TCAACATTGTCCTATACTTA+AGG | - | chr1_4:54448397-54448416 | Msa0170450:intron | 30.0% | |
| !!! | GTAGAAGTTTTTAGTATGAC+TGG | - | chr1_4:54448425-54448444 | Msa0170450:intron | 30.0% |
| TAATCATCGTTGGATTGAAT+TGG | - | chr1_4:54448454-54448473 | Msa0170450:intron | 30.0% | |
| ! | TTAATCTTTTGTCCTCTTCT+CGG | - | chr1_4:54448709-54448728 | Msa0170450:intron | 30.0% |
| !!! | GCTTTAGCTTTTAATTGTTG+TGG | - | chr1_4:54448736-54448755 | Msa0170450:intron | 30.0% |
| TCAAATAAAGCAACATTCCA+CGG | + | chr1_4:54448939-54448958 | None:intergenic | 30.0% | |
| TGATAAACGACAAATTAGTG+AGG | - | chr1_4:54449035-54449054 | Msa0170450:intron | 30.0% | |
| GATAAACGACAAATTAGTGA+GGG | - | chr1_4:54449036-54449055 | Msa0170450:intron | 30.0% | |
| ! | AATGAGTCTTGACTATTTTG+GGG | + | chr1_4:54449090-54449109 | None:intergenic | 30.0% |
| ! | GAAATGAGTCTTGACTATTT+TGG | + | chr1_4:54449092-54449111 | None:intergenic | 30.0% |
| TCTCTCCTTCTTTCATATAA+AGG | + | chr1_4:54449738-54449757 | None:intergenic | 30.0% | |
| ! | TTTCTGAGAGAGCATATTTA+AGG | - | chr1_4:54449776-54449795 | Msa0170450:intron | 30.0% |
| ! | ATGCAATAACCAAATTTTGG+GGG | + | chr1_4:54450058-54450077 | None:intergenic | 30.0% |
| ! | CCAATGCAATAACCAAATTT+TGG | + | chr1_4:54450061-54450080 | None:intergenic | 30.0% |
| CCAAAATTTGGTTATTGCAT+TGG | - | chr1_4:54450058-54450077 | Msa0170450:intron | 30.0% | |
| AGACATGAAAAATGAGAGAT+AGG | + | chr1_4:54450117-54450136 | None:intergenic | 30.0% | |
| CACGAAATATTTGACTGACT+CGG | - | chr1_4:54441748-54441767 | Msa0170450:three_prime_UTR | 35.0% | |
| ACTTGTTCATCTTCAGTGTT+AGG | - | chr1_4:54441942-54441961 | Msa0170450:three_prime_UTR | 35.0% | |
| GATAGTACATAACATGTCAC+TGG | - | chr1_4:54442036-54442055 | Msa0170450:CDS | 35.0% | |
| CCTCAGCAATAGTTGAATAA+TGG | + | chr1_4:54442292-54442311 | None:intergenic | 35.0% | |
| CCATTATTCAACTATTGCTG+AGG | - | chr1_4:54442289-54442308 | Msa0170450:intron | 35.0% | |
| ACTATTGCTGAGGATGAATT+AGG | - | chr1_4:54442299-54442318 | Msa0170450:intron | 35.0% | |
| CGATAAGGACAGCAAAAAAA+AGG | + | chr1_4:54442519-54442538 | None:intergenic | 35.0% | |
| ! | CAATGAAGAGCATATGTCAT+AGG | + | chr1_4:54442545-54442564 | None:intergenic | 35.0% |
| !! | AAATTGGTGCTCACATTTTC+TGG | + | chr1_4:54442716-54442735 | None:intergenic | 35.0% |
| ATGTGAGCACCAATTTCATT+TGG | - | chr1_4:54442720-54442739 | Msa0170450:intron | 35.0% | |
| TTCCTCTGTCCAAATGAAAT+TGG | + | chr1_4:54442732-54442751 | None:intergenic | 35.0% | |
| GGAAAATAATAGTAGCTCTC+AGG | - | chr1_4:54442748-54442767 | Msa0170450:intron | 35.0% | |
| AAGAAATGCGTGGAAAAGTT+TGG | - | chr1_4:54442772-54442791 | Msa0170450:intron | 35.0% | |
| CTGACACATACAAAGTTTGT+TGG | - | chr1_4:54443033-54443052 | Msa0170450:intron | 35.0% | |
| ACGTCTAATTTAAGTGGCTT+AGG | + | chr1_4:54443159-54443178 | None:intergenic | 35.0% | |
| AAGGAGACGTCTAATTTAAG+TGG | + | chr1_4:54443165-54443184 | None:intergenic | 35.0% | |
| !! | AAGAAGCACCAAAAAGAATC+TGG | + | chr1_4:54443368-54443387 | None:intergenic | 35.0% |
| !! | TGCATCTCGTTTGTTTTCAT+TGG | - | chr1_4:54443394-54443413 | Msa0170450:intron | 35.0% |
| !! | ATCTCGTTTGTTTTCATTGG+AGG | - | chr1_4:54443397-54443416 | Msa0170450:intron | 35.0% |
| GTTTCTTGTTCTTCAAGCTA+AGG | - | chr1_4:54443419-54443438 | Msa0170450:intron | 35.0% | |
| AAAGTATGTGTGAATCTGTG+TGG | - | chr1_4:54443596-54443615 | Msa0170450:intron | 35.0% | |
| ACCATACAACTAAATCGAGA+TGG | - | chr1_4:54443753-54443772 | Msa0170450:intron | 35.0% | |
| TCCATCTCGATTTAGTTGTA+TGG | + | chr1_4:54443757-54443776 | None:intergenic | 35.0% | |
| CAACTAAATCGAGATGGAAA+CGG | - | chr1_4:54443759-54443778 | Msa0170450:intron | 35.0% | |
| AATCTGCCAAAACATGTCTT+AGG | - | chr1_4:54443832-54443851 | Msa0170450:intron | 35.0% | |
| ! | CAATCTCCTAAGACATGTTT+TGG | + | chr1_4:54443841-54443860 | None:intergenic | 35.0% |
| !!! | AGTTTTCAGGACTAGTTTAC+CGG | + | chr1_4:54443890-54443909 | None:intergenic | 35.0% |
| ATTTCTTGGAAACATGGGTT+GGG | + | chr1_4:54443952-54443971 | None:intergenic | 35.0% | |
| AATTTCTTGGAAACATGGGT+TGG | + | chr1_4:54443953-54443972 | None:intergenic | 35.0% | |
| ! | AATCAAATTTTAAGCTGCCG+AGG | + | chr1_4:54444113-54444132 | None:intergenic | 35.0% |
| GGGCCATTATTAAATTATCC+AGG | - | chr1_4:54444168-54444187 | Msa0170450:CDS | 35.0% | |
| CAGTGATTGTTTATTGTTCC+TGG | + | chr1_4:54444189-54444208 | None:intergenic | 35.0% | |
| CAGGAACAATAAACAATCAC+TGG | - | chr1_4:54444187-54444206 | Msa0170450:intron | 35.0% | |
| ! | CCAACAAAATGTGTGTCATT+TGG | + | chr1_4:54444351-54444370 | None:intergenic | 35.0% |
| ! | CCAAATGACACACATTTTGT+TGG | - | chr1_4:54444348-54444367 | Msa0170450:CDS | 35.0% |
| !! | TTGGCTTTGTTCTTGCAATA+TGG | - | chr1_4:54444403-54444422 | Msa0170450:intron | 35.0% |
| !! | TGGCTTTGTTCTTGCAATAT+GGG | - | chr1_4:54444404-54444423 | Msa0170450:intron | 35.0% |
| GTACCATGACTGAACAATTT+AGG | - | chr1_4:54444454-54444473 | Msa0170450:intron | 35.0% | |
| TACCCTAAATTGTTCAGTCA+TGG | + | chr1_4:54444460-54444479 | None:intergenic | 35.0% | |
| GCAATCAAAACACAAGATGA+AGG | + | chr1_4:54444741-54444760 | None:intergenic | 35.0% | |
| !!! | TCATCTTGTGTTTTGATTGC+TGG | - | chr1_4:54444741-54444760 | Msa0170450:CDS | 35.0% |
| ! | ATGTCGTTTCATTTCTATGC+AGG | - | chr1_4:54444774-54444793 | Msa0170450:intron | 35.0% |
| TTGGAAGATCAGACATAAGA+AGG | + | chr1_4:54444811-54444830 | None:intergenic | 35.0% | |
| ATATTGATCTCCTTAGCAAG+AGG | - | chr1_4:54444879-54444898 | Msa0170450:CDS | 35.0% | |
| AATTATACTGCCAGCAAAAG+GGG | - | chr1_4:54445225-54445244 | Msa0170450:intron | 35.0% | |
| GTCACTAACATCTAAGTCAT+AGG | - | chr1_4:54445398-54445417 | Msa0170450:intron | 35.0% | |
| CACTAACATCTAAGTCATAG+GGG | - | chr1_4:54445400-54445419 | Msa0170450:intron | 35.0% | |
| ! | AGTGTCTGCTTAAGTTGTTA+TGG | - | chr1_4:54445447-54445466 | Msa0170450:intron | 35.0% |
| !!! | TATGGAGATTTTAGAATGGG+GGG | - | chr1_4:54445465-54445484 | Msa0170450:intron | 35.0% |
| TTAGTCCTAATTATTGGGAC+AGG | - | chr1_4:54445641-54445660 | Msa0170450:intron | 35.0% | |
| ATATTAGCAGTGAAGTCACT+AGG | + | chr1_4:54445781-54445800 | None:intergenic | 35.0% | |
| AAAACAACTCGAGCTATCTA+TGG | + | chr1_4:54445884-54445903 | None:intergenic | 35.0% | |
| ! | CATATCTGGAATTGGTTGAA+GGG | + | chr1_4:54446027-54446046 | None:intergenic | 35.0% |
| CTTCAACCAATTCCAGATAT+GGG | - | chr1_4:54446026-54446045 | Msa0170450:intron | 35.0% | |
| GTAACAAACCTCAACTATTG+TGG | + | chr1_4:54446060-54446079 | None:intergenic | 35.0% | |
| CTTCAACAAGTCACATGTTT+GGG | + | chr1_4:54446178-54446197 | None:intergenic | 35.0% | |
| ACTTCAACAAGTCACATGTT+TGG | + | chr1_4:54446179-54446198 | None:intergenic | 35.0% | |
| !! | TGACTTGTTGAAGTCAATCT+CGG | - | chr1_4:54446185-54446204 | Msa0170450:intron | 35.0% |
| ! | TGTGTCGTGTTTCTAAAGAT+TGG | - | chr1_4:54446329-54446348 | Msa0170450:intron | 35.0% |
| TATGTCATTCCTTCAAGATC+AGG | + | chr1_4:54446666-54446685 | None:intergenic | 35.0% | |
| TTATTTCAGGCTGTTGTATG+TGG | - | chr1_4:54446794-54446813 | Msa0170450:CDS | 35.0% | |
| !! | GGAAGTATATTTTCCCATTC+CGG | + | chr1_4:54446826-54446845 | None:intergenic | 35.0% |
| GAATTTCATCATCATTTGGG+TGG | + | chr1_4:54446847-54446866 | None:intergenic | 35.0% | |
| GTGGCTTATTAGTATTCTGA+AGG | + | chr1_4:54446995-54447014 | None:intergenic | 35.0% | |
| CCATTTGTGGTTATAACTTG+TGG | + | chr1_4:54447014-54447033 | None:intergenic | 35.0% | |
| CCACAAGTTATAACCACAAA+TGG | - | chr1_4:54447011-54447030 | Msa0170450:intron | 35.0% | |
| ATAACCACAAATGGGAAAGA+AGG | - | chr1_4:54447020-54447039 | Msa0170450:intron | 35.0% | |
| ! | TTTTCCTTCTTTCCCATTTG+TGG | + | chr1_4:54447027-54447046 | None:intergenic | 35.0% |
| AATGGGAAAGAAGGAAAAGA+TGG | - | chr1_4:54447029-54447048 | Msa0170450:intron | 35.0% | |
| ! | AATGCATTCTTTTACTTGGG+TGG | - | chr1_4:54447281-54447300 | Msa0170450:intron | 35.0% |
| ! | CAAGAGTATGAGAACTATCT+CGG | - | chr1_4:54447328-54447347 | Msa0170450:CDS | 35.0% |
| AAACATACCAAAACACTTCC+AGG | + | chr1_4:54447355-54447374 | None:intergenic | 35.0% | |
| ! | GTGGTAGGATATTGCATTTT+CGG | + | chr1_4:54447518-54447537 | None:intergenic | 35.0% |
| CAATGTCATGTATCTTCTGA+TGG | + | chr1_4:54447584-54447603 | None:intergenic | 35.0% | |
| CATCAGAAGATACATGACAT+TGG | - | chr1_4:54447582-54447601 | Msa0170450:CDS | 35.0% | |
| ! | AGAATGTTCGAGTTTCTCAT+AGG | - | chr1_4:54447717-54447736 | Msa0170450:intron | 35.0% |
| ! | GAATGTTCGAGTTTCTCATA+GGG | - | chr1_4:54447718-54447737 | Msa0170450:intron | 35.0% |
| CTTGCATATCTGACAAAGAT+TGG | - | chr1_4:54447923-54447942 | Msa0170450:intron | 35.0% | |
| TCTGCAAAAACAAAAGTCAG+TGG | + | chr1_4:54447997-54448016 | None:intergenic | 35.0% | |
| GAAAATATCTGCGACAAACT+TGG | - | chr1_4:54448063-54448082 | Msa0170450:intron | 35.0% | |
| GGACAAGAAAAAATCTCAAG+AGG | + | chr1_4:54448165-54448184 | None:intergenic | 35.0% | |
| ! | GACAATGTTGACTAAATCAG+AGG | + | chr1_4:54448388-54448407 | None:intergenic | 35.0% |
| CATTGTCCTATACTTAAGGA+CGG | - | chr1_4:54448401-54448420 | Msa0170450:intron | 35.0% | |
| !!! | AGTTTTTAGTATGACTGGAG+AGG | - | chr1_4:54448430-54448449 | Msa0170450:intron | 35.0% |
| GATTGAATTGGCTGTTATGT+AGG | - | chr1_4:54448466-54448485 | Msa0170450:intron | 35.0% | |
| AAAGACATACTAGATGCAGA+GGG | - | chr1_4:54448835-54448854 | Msa0170450:CDS | 35.0% | |
| GGGTGATGAAATATATGTGA+AGG | - | chr1_4:54448855-54448874 | Msa0170450:CDS | 35.0% | |
| ATCTACTCATGTTGTGATTG+TGG | - | chr1_4:54448882-54448901 | Msa0170450:CDS | 35.0% | |
| GCTAGGAAACATTCAAATAG+AGG | + | chr1_4:54448969-54448988 | None:intergenic | 35.0% | |
| TCAACTAGCAAGTGTATGTT+TGG | - | chr1_4:54449116-54449135 | Msa0170450:intron | 35.0% | |
| ! | TGTATGTTTGGAACTTACTG+TGG | - | chr1_4:54449128-54449147 | Msa0170450:intron | 35.0% |
| ! | TACTGTGGCGAACATAATTT+TGG | - | chr1_4:54449143-54449162 | Msa0170450:intron | 35.0% |
| ! | ACTGTGGCGAACATAATTTT+GGG | - | chr1_4:54449144-54449163 | Msa0170450:intron | 35.0% |
| ! | GTTTGAAGCAAAGCTGTAAA+AGG | + | chr1_4:54449213-54449232 | None:intergenic | 35.0% |
| ACTAGAACATGATTCAGTTG+AGG | - | chr1_4:54449422-54449441 | Msa0170450:intron | 35.0% | |
| ATCATAACAAACGACCAACT+GGG | - | chr1_4:54449635-54449654 | Msa0170450:intron | 35.0% | |
| GTTCTTCTTCACATAACCTA+TGG | + | chr1_4:54449812-54449831 | None:intergenic | 35.0% | |
| ! | TAATAGCCTTTCCCATTTTC+AGG | - | chr1_4:54449900-54449919 | Msa0170450:intron | 35.0% |
| TGATTACCTGAAAATGGGAA+AGG | + | chr1_4:54449909-54449928 | None:intergenic | 35.0% | |
| !! | TGGGTTGATTACCTGAAAAT+GGG | + | chr1_4:54449914-54449933 | None:intergenic | 35.0% |
| !! | TTGGGTTGATTACCTGAAAA+TGG | + | chr1_4:54449915-54449934 | None:intergenic | 35.0% |
| ! | ATTGATAGTCATATCTGAGC+TGG | - | chr1_4:54449975-54449994 | Msa0170450:intron | 35.0% |
| CGGCATAATTACAAAATGAC+TGG | + | chr1_4:54450012-54450031 | None:intergenic | 35.0% | |
| AAATTCTGACCCCCAAAATT+TGG | - | chr1_4:54450046-54450065 | Msa0170450:intron | 35.0% | |
| ACACCAACAACAAGAATTCC+AGG | - | chr1_4:54441918-54441937 | Msa0170450:three_prime_UTR | 40.0% | |
| ! | GTACCTGGAATTCTTGTTGT+TGG | + | chr1_4:54441924-54441943 | None:intergenic | 40.0% |
| ACTGAAGATGAACAAGTACC+TGG | + | chr1_4:54441939-54441958 | None:intergenic | 40.0% | |
| CCATGACTCGTGAAATTACA+AGG | + | chr1_4:54442072-54442091 | None:intergenic | 40.0% | |
| CCTTGTAATTTCACGAGTCA+TGG | - | chr1_4:54442069-54442088 | Msa0170450:CDS | 40.0% | |
| !!! | GATGGCAGGTTGATTTTCAA+AGG | - | chr1_4:54442651-54442670 | Msa0170450:intron | 40.0% |
| CACCAATTTCATTTGGACAG+AGG | - | chr1_4:54442727-54442746 | Msa0170450:intron | 40.0% | |
| GCACATATCGAACTATTGCT+TGG | + | chr1_4:54443077-54443096 | None:intergenic | 40.0% | |
| AAGTGGCTTAGGTGTATTCA+AGG | + | chr1_4:54443148-54443167 | None:intergenic | 40.0% | |
| ATATTAGATGGAGCTTAGCG+CGG | - | chr1_4:54443199-54443218 | Msa0170450:CDS | 40.0% | |
| ! | TCCTTTTTGTCAAGGCTTCT+GGG | + | chr1_4:54443530-54443549 | None:intergenic | 40.0% |
| ! | TTCCTTTTTGTCAAGGCTTC+TGG | + | chr1_4:54443531-54443550 | None:intergenic | 40.0% |
| GTAACAAGTAATGATCACCG+TGG | + | chr1_4:54443698-54443717 | None:intergenic | 40.0% | |
| AGTTGTATGGTGCGTTTACT+TGG | + | chr1_4:54443744-54443763 | None:intergenic | 40.0% | |
| AAATCGAGATGGAAACGGAA+TGG | - | chr1_4:54443764-54443783 | Msa0170450:intron | 40.0% | |
| CTCTGAGTCATACCAAATTG+CGG | - | chr1_4:54443796-54443815 | Msa0170450:intron | 40.0% | |
| AGCATTGTGATTCCGCAATT+TGG | + | chr1_4:54443811-54443830 | None:intergenic | 40.0% | |
| TCATATACAACTTGTGGAGC+CGG | - | chr1_4:54443868-54443887 | Msa0170450:intron | 40.0% | |
| ! | TTTGCTCAATGGGAGTTTTC+AGG | + | chr1_4:54443903-54443922 | None:intergenic | 40.0% |
| ! | GTTTGTTACCACAGAGTCAT+GGG | - | chr1_4:54444048-54444067 | Msa0170450:CDS | 40.0% |
| AAAATGATCCCATGACTCTG+TGG | + | chr1_4:54444059-54444078 | None:intergenic | 40.0% | |
| !!! | ACTGGAAGAATGTTTTTGGG+AGG | - | chr1_4:54444205-54444224 | Msa0170450:intron | 40.0% |
| !!! | AAGAATGTTTTTGGGAGGCA+TGG | - | chr1_4:54444210-54444229 | Msa0170450:intron | 40.0% |
| !!! | AGAATGTTTTTGGGAGGCAT+GGG | - | chr1_4:54444211-54444230 | Msa0170450:intron | 40.0% |
| ATAACACGCTCAATACGTGT+TGG | + | chr1_4:54444384-54444403 | None:intergenic | 40.0% | |
| ACACGTATTGAGCGTGTTAT+TGG | - | chr1_4:54444384-54444403 | Msa0170450:intron | 40.0% | |
| !! | GGCTTTGTTCTTGCAATATG+GGG | - | chr1_4:54444405-54444424 | Msa0170450:intron | 40.0% |
| CGCAACAGAGTAATATGCAA+AGG | - | chr1_4:54444543-54444562 | Msa0170450:intron | 40.0% | |
| AGAGTAATATGCAAAGGCTC+AGG | - | chr1_4:54444549-54444568 | Msa0170450:intron | 40.0% | |
| GAGTAATATGCAAAGGCTCA+GGG | - | chr1_4:54444550-54444569 | Msa0170450:intron | 40.0% | |
| !! | AAAGCCGGTTTGACAAAAGA+AGG | + | chr1_4:54444924-54444943 | None:intergenic | 40.0% |
| TTAGGATTGCTCAGTGCATT+GGG | - | chr1_4:54444981-54445000 | Msa0170450:CDS | 40.0% | |
| !!! | ATGGAGATTTTAGAATGGGG+GGG | - | chr1_4:54445466-54445485 | Msa0170450:intron | 40.0% |
| AGTAATAGAAGCTACGGTCT+AGG | + | chr1_4:54445697-54445716 | None:intergenic | 40.0% | |
| !! | AGCTCTAGGTTATTCGATCT+AGG | - | chr1_4:54445741-54445760 | Msa0170450:CDS | 40.0% |
| ! | GCTCTAGGTTATTCGATCTA+GGG | - | chr1_4:54445742-54445761 | Msa0170450:CDS | 40.0% |
| TTTACTTGCCTCGTAGTGTT+CGG | - | chr1_4:54445852-54445871 | Msa0170450:intron | 40.0% | |
| ! | CCATATCTGGAATTGGTTGA+AGG | + | chr1_4:54446028-54446047 | None:intergenic | 40.0% |
| CCTTCAACCAATTCCAGATA+TGG | - | chr1_4:54446025-54446044 | Msa0170450:intron | 40.0% | |
| ! | ACAGAACCCATATCTGGAAT+TGG | + | chr1_4:54446035-54446054 | None:intergenic | 40.0% |
| TTCTGTCTCCACAATAGTTG+AGG | - | chr1_4:54446049-54446068 | Msa0170450:intron | 40.0% | |
| !! | GACTTGTTGAAGTCAATCTC+GGG | - | chr1_4:54446186-54446205 | Msa0170450:intron | 40.0% |
| ! | ACTTGTTGAAGTCAATCTCG+GGG | - | chr1_4:54446187-54446206 | Msa0170450:intron | 40.0% |
| TTGGATGCAACATCTTCTAC+TGG | + | chr1_4:54446225-54446244 | None:intergenic | 40.0% | |
| TTTCGATTTCTCGGATGAGT+TGG | - | chr1_4:54446483-54446502 | Msa0170450:intron | 40.0% | |
| TGCCCTACACATATCTATTC+CGG | - | chr1_4:54446583-54446602 | Msa0170450:intron | 40.0% | |
| CACCGGAATAGATATGTGTA+GGG | + | chr1_4:54446588-54446607 | None:intergenic | 40.0% | |
| ACACCGGAATAGATATGTGT+AGG | + | chr1_4:54446589-54446608 | None:intergenic | 40.0% | |
| CTGTTGTATGTGGTCTTTAC+CGG | - | chr1_4:54446804-54446823 | Msa0170450:CDS | 40.0% | |
| TATGTGGTCTTTACCGGAAT+GGG | - | chr1_4:54446810-54446829 | Msa0170450:CDS | 40.0% | |
| ! | GTCGTGTCTACCTTTTATCT+TGG | - | chr1_4:54446924-54446943 | Msa0170450:intron | 40.0% |
| CCAATGAACAATACCTAACG+AGG | + | chr1_4:54446969-54446988 | None:intergenic | 40.0% | |
| ! | CCTCGTTAGGTATTGTTCAT+TGG | - | chr1_4:54446966-54446985 | Msa0170450:intron | 40.0% |
| ACCTTAATCAGTCTTCCTCT+TGG | - | chr1_4:54447436-54447455 | Msa0170450:CDS | 40.0% | |
| ACCAAGAGGAAGACTGATTA+AGG | + | chr1_4:54447440-54447459 | None:intergenic | 40.0% | |
| !! | TTATTGTTTTGCGGACCAAG+AGG | + | chr1_4:54447454-54447473 | None:intergenic | 40.0% |
| ACTATAGATTGGAAACCCCA+TGG | - | chr1_4:54447825-54447844 | Msa0170450:intron | 40.0% | |
| !! | TCTGACAAAGATTGGCTTCT+TGG | - | chr1_4:54447931-54447950 | Msa0170450:intron | 40.0% |
| AGCAGATAGCTTATCTGTCT+TGG | + | chr1_4:54448025-54448044 | None:intergenic | 40.0% | |
| ! | CGCAGATATTTTCTGCAAGT+AGG | + | chr1_4:54448056-54448075 | None:intergenic | 40.0% |
| TCTACTCCGTCCTTAAGTAT+AGG | + | chr1_4:54448410-54448429 | None:intergenic | 40.0% | |
| AATGACCTTGAGCAGTTACA+AGG | + | chr1_4:54448691-54448710 | None:intergenic | 40.0% | |
| GAAAGACATACTAGATGCAG+AGG | - | chr1_4:54448834-54448853 | Msa0170450:CDS | 40.0% | |
| GTATGTAATCATTACGACCG+TGG | - | chr1_4:54448919-54448938 | Msa0170450:CDS | 40.0% | |
| CATGCACGAAATTTCATGCT+AGG | + | chr1_4:54448986-54449005 | None:intergenic | 40.0% | |
| GGATCACCATTATTCCTTCT+AGG | + | chr1_4:54449192-54449211 | None:intergenic | 40.0% | |
| AAACGTTCACTTGCTTCACA+TGG | - | chr1_4:54449233-54449252 | Msa0170450:intron | 40.0% | |
| TTCACATGGTTTACCAAACG+TGG | - | chr1_4:54449247-54449266 | Msa0170450:intron | 40.0% | |
| TTGCTCGTGCTACACTAATT+TGG | - | chr1_4:54449323-54449342 | Msa0170450:CDS | 40.0% | |
| TACACTAATTTGGCAGGCAT+GGG | - | chr1_4:54449333-54449352 | Msa0170450:CDS | 40.0% | |
| TTGTAACCCTCTGATTTCCA+GGG | + | chr1_4:54449529-54449548 | None:intergenic | 40.0% | |
| !! | CAGTTGGTCGTTTGTTATGA+TGG | + | chr1_4:54449636-54449655 | None:intergenic | 40.0% |
| CATCATAACAAACGACCAAC+TGG | - | chr1_4:54449634-54449653 | Msa0170450:intron | 40.0% | |
| TCATAACAAACGACCAACTG+GGG | - | chr1_4:54449636-54449655 | Msa0170450:intron | 40.0% | |
| ATGCATACTTAATCCCCAGT+TGG | + | chr1_4:54449652-54449671 | None:intergenic | 40.0% | |
| TCAGAAAGCTCGGAAAATGA+TGG | + | chr1_4:54449763-54449782 | None:intergenic | 40.0% | |
| ATATGCTCTCTCAGAAAGCT+CGG | + | chr1_4:54449773-54449792 | None:intergenic | 40.0% | |
| TTAAGGAGAGAAGTAGCCAT+AGG | - | chr1_4:54449793-54449812 | Msa0170450:intron | 40.0% | |
| TCAGTCAATTCAAGAGAGAG+GGG | + | chr1_4:54449952-54449971 | None:intergenic | 40.0% | |
| GTCAGTCAATTCAAGAGAGA+GGG | + | chr1_4:54449953-54449972 | None:intergenic | 40.0% | |
| AGTCAGTCAATTCAAGAGAG+AGG | + | chr1_4:54449954-54449973 | None:intergenic | 40.0% | |
| ATAGTCATATCTGAGCTGGA+AGG | - | chr1_4:54449979-54449998 | Msa0170450:intron | 40.0% | |
| AAGTGAGTGAGATTCATGGC+TGG | + | chr1_4:54441839-54441858 | None:intergenic | 45.0% | |
| GTGGAAGTGAGTGAGATTCA+TGG | + | chr1_4:54441843-54441862 | None:intergenic | 45.0% | |
| TATGTGTGCCTTGGAATCCA+TGG | + | chr1_4:54441881-54441900 | None:intergenic | 45.0% | |
| GATTGCTTGTGATGCTTCAC+AGG | - | chr1_4:54442369-54442388 | Msa0170450:intron | 45.0% | |
| CTTCACCTTCTCCATTACAC+AGG | - | chr1_4:54442426-54442445 | Msa0170450:intron | 45.0% | |
| ATGTAAACCCTGTAGGGAGA+TGG | - | chr1_4:54442633-54442652 | Msa0170450:intron | 45.0% | |
| TATGTGCCTCAGACTCTTGA+CGG | - | chr1_4:54443090-54443109 | Msa0170450:intron | 45.0% | |
| ! | CCTTTTTGTCAAGGCTTCTG+GGG | + | chr1_4:54443529-54443548 | None:intergenic | 45.0% |
| !! | GGTTTGTTACCACAGAGTCA+TGG | - | chr1_4:54444047-54444066 | Msa0170450:intron | 45.0% |
| CTAACGACCCAATTAGACCT+CGG | - | chr1_4:54444093-54444112 | Msa0170450:CDS | 45.0% | |
| TAAGCTGCCGAGGTCTAATT+GGG | + | chr1_4:54444103-54444122 | None:intergenic | 45.0% | |
| TTAAGCTGCCGAGGTCTAAT+TGG | + | chr1_4:54444104-54444123 | None:intergenic | 45.0% | |
| TAATATGCAAAGGCTCAGGG+AGG | - | chr1_4:54444553-54444572 | Msa0170450:intron | 45.0% | |
| AATATGCAAAGGCTCAGGGA+GGG | - | chr1_4:54444554-54444573 | Msa0170450:intron | 45.0% | |
| CTTAGGATTGCTCAGTGCAT+TGG | - | chr1_4:54444980-54444999 | Msa0170450:CDS | 45.0% | |
| !!! | TGGAGATTTTAGAATGGGGG+GGG | - | chr1_4:54445467-54445486 | Msa0170450:intron | 45.0% |
| GGAGAGAGAGAGCTGAAAAT+TGG | - | chr1_4:54445496-54445515 | Msa0170450:intron | 45.0% | |
| TATATCGTGTCAGCAGCTCT+AGG | - | chr1_4:54445727-54445746 | Msa0170450:CDS | 45.0% | |
| GCAAGTAAACAGTCGATGGA+TGG | + | chr1_4:54445841-54445860 | None:intergenic | 45.0% | |
| GGAATTAACCGAACACTACG+AGG | + | chr1_4:54445863-54445882 | None:intergenic | 45.0% | |
| !! | TGGTACCGGTTTCGATTTCT+CGG | - | chr1_4:54446474-54446493 | Msa0170450:intron | 45.0% |
| CTCATCCGAGAAATCGAAAC+CGG | + | chr1_4:54446482-54446501 | None:intergenic | 45.0% | |
| GTATGTGGTCTTTACCGGAA+TGG | - | chr1_4:54446809-54446828 | Msa0170450:CDS | 45.0% | |
| ! | TCCTAACAGATCTGGTTCCA+AGG | - | chr1_4:54447133-54447152 | Msa0170450:CDS | 45.0% |
| ACCTTGGAACCAGATCTGTT+AGG | + | chr1_4:54447137-54447156 | None:intergenic | 45.0% | |
| CAGAACAGCAAGTCATACCT+TGG | + | chr1_4:54447153-54447172 | None:intergenic | 45.0% | |
| ! | TTTCGACGAGTGCTATTCTG+CGG | - | chr1_4:54447187-54447206 | Msa0170450:CDS | 45.0% |
| ATCACCATTTAGGCAGCAGA+CGG | - | chr1_4:54447241-54447260 | Msa0170450:intron | 45.0% | |
| TATGAGAACTATCTCGGTCC+TGG | - | chr1_4:54447334-54447353 | Msa0170450:CDS | 45.0% | |
| CAGAGACGCCATTAAATGAC+AGG | - | chr1_4:54447657-54447676 | Msa0170450:intron | 45.0% | |
| ! | ATTGGAAACCCCATGGACTA+CGG | - | chr1_4:54447832-54447851 | Msa0170450:intron | 45.0% |
| !! | TTTAAGGTGCCGTAGTCCAT+GGG | + | chr1_4:54447844-54447863 | None:intergenic | 45.0% |
| !! | GACAAAGATTGGCTTCTTGG+AGG | - | chr1_4:54447934-54447953 | Msa0170450:intron | 45.0% |
| CTGGAGAGGATAATCATCGT+TGG | - | chr1_4:54448444-54448463 | Msa0170450:intron | 45.0% | |
| ! | TTGAGCCTTGTAACTGCTCA+AGG | - | chr1_4:54448683-54448702 | Msa0170450:intron | 45.0% |
| GAAAACACTTGCAAAGCTGC+AGG | - | chr1_4:54449166-54449185 | Msa0170450:intron | 45.0% | |
| TGCAGGCCTAGAAGGAATAA+TGG | - | chr1_4:54449183-54449202 | Msa0170450:intron | 45.0% | |
| ! | GGTTTACCAAACGTGGACTA+AGG | - | chr1_4:54449254-54449273 | Msa0170450:CDS | 45.0% |
| AGCACGAGCAAAGCTAACAA+TGG | + | chr1_4:54449314-54449333 | None:intergenic | 45.0% | |
| TCGTGCTACACTAATTTGGC+AGG | - | chr1_4:54449327-54449346 | Msa0170450:CDS | 45.0% | |
| CTACACTAATTTGGCAGGCA+TGG | - | chr1_4:54449332-54449351 | Msa0170450:CDS | 45.0% | |
| TGGTAATCCGGAGTTCAACT+GGG | + | chr1_4:54449495-54449514 | None:intergenic | 45.0% | |
| ! | GGAAATGGACTCTGGTAATC+CGG | + | chr1_4:54449507-54449526 | None:intergenic | 45.0% |
| CATTTCCCCTGGAAATCAGA+GGG | - | chr1_4:54449520-54449539 | Msa0170450:intron | 45.0% | |
| TGTAACCCTCTGATTTCCAG+GGG | + | chr1_4:54449528-54449547 | None:intergenic | 45.0% | |
| GTTGTAACCCTCTGATTTCC+AGG | + | chr1_4:54449530-54449549 | None:intergenic | 45.0% | |
| GCAGCATTGCAGTTAACTCA+AGG | - | chr1_4:54449682-54449701 | Msa0170450:intron | 45.0% | |
| !! | GGGGTTCTGACTTTGGAATT+GGG | + | chr1_4:54449933-54449952 | None:intergenic | 45.0% |
| !! | AGGGGTTCTGACTTTGGAAT+TGG | + | chr1_4:54449934-54449953 | None:intergenic | 45.0% |
| TCTCACTCTGCTCCTAGTAG+TGG | + | chr1_4:54441811-54441830 | None:intergenic | 50.0% | |
| ! | ATGGAAGACAGGAGTGCATG+TGG | + | chr1_4:54441862-54441881 | None:intergenic | 50.0% |
| ACATGCACTCCTGTCTTCCA+TGG | - | chr1_4:54441861-54441880 | Msa0170450:three_prime_UTR | 50.0% | |
| CCTTGGAATCCATGGAAGAC+AGG | + | chr1_4:54441873-54441892 | None:intergenic | 50.0% | |
| CCTGTCTTCCATGGATTCCA+AGG | - | chr1_4:54441870-54441889 | Msa0170450:three_prime_UTR | 50.0% | |
| GATGAGCAGTATGTGTGCCT+TGG | + | chr1_4:54441890-54441909 | None:intergenic | 50.0% | |
| TGCTTGTGATGCTTCACAGG+AGG | - | chr1_4:54442372-54442391 | Msa0170450:intron | 50.0% | |
| GCTTGTGATGCTTCACAGGA+GGG | - | chr1_4:54442373-54442392 | Msa0170450:intron | 50.0% | |
| TTGTGCCCTGTCATATCAGC+TGG | - | chr1_4:54442396-54442415 | Msa0170450:intron | 50.0% | |
| CTGAGCCAGCTGATATGACA+GGG | + | chr1_4:54442404-54442423 | None:intergenic | 50.0% | |
| CGAATACCACGCCTGTGTAA+TGG | + | chr1_4:54442440-54442459 | None:intergenic | 50.0% | |
| GGTATTCGACCACACACTGA+AGG | - | chr1_4:54442452-54442471 | Msa0170450:intron | 50.0% | |
| TGCAACTCACCTTCAGTGTG+TGG | + | chr1_4:54442464-54442483 | None:intergenic | 50.0% | |
| GCTCTCAGGTAAGAAATGCG+TGG | - | chr1_4:54442762-54442781 | Msa0170450:intron | 50.0% | |
| GAAATGCCGCATGTGCTACA+GGG | - | chr1_4:54442958-54442977 | Msa0170450:intron | 50.0% | |
| CTTGTTCCGTCAAGAGTCTG+AGG | + | chr1_4:54443099-54443118 | None:intergenic | 50.0% | |
| GACTCTTGACGGAACAAGCT+TGG | - | chr1_4:54443101-54443120 | Msa0170450:intron | 50.0% | |
| CCCCAGAAGCCTTGACAAAA+AGG | - | chr1_4:54443526-54443545 | Msa0170450:intron | 50.0% | |
| GCTTTACATGTGTGCTGCCA+CGG | - | chr1_4:54443678-54443697 | Msa0170450:intron | 50.0% | |
| !! | CAATACGTGTTGGTTGCTGC+AGG | + | chr1_4:54444374-54444393 | None:intergenic | 50.0% |
| ! | GGGAGCACAAATGCAAGTCA+TGG | - | chr1_4:54444574-54444593 | Msa0170450:intron | 50.0% |
| !! | AGCGTCGATACCTCTTGCTA+AGG | + | chr1_4:54444892-54444911 | None:intergenic | 50.0% |
| !! | TTAGCAAGAGGTATCGACGC+TGG | - | chr1_4:54444891-54444910 | Msa0170450:CDS | 50.0% |
| !! | TAGCAAGAGGTATCGACGCT+GGG | - | chr1_4:54444892-54444911 | Msa0170450:CDS | 50.0% |
| TACTGCCAGCAAAAGGGGAT+CGG | - | chr1_4:54445230-54445249 | Msa0170450:intron | 50.0% | |
| ! | ACTTACCGATCCCCTTTTGC+TGG | + | chr1_4:54445238-54445257 | None:intergenic | 50.0% |
| !!! | GGAGATTTTAGAATGGGGGG+GGG | - | chr1_4:54445468-54445487 | Msa0170450:intron | 50.0% |
| !!! | GAGATTTTAGAATGGGGGGG+GGG | - | chr1_4:54445469-54445488 | Msa0170450:intron | 50.0% |
| !!! | AGATTTTAGAATGGGGGGGG+GGG | - | chr1_4:54445470-54445489 | Msa0170450:intron | 50.0% |
| GCAGTGAAGTCACTAGGAGA+GGG | + | chr1_4:54445775-54445794 | None:intergenic | 50.0% | |
| AGCAGTGAAGTCACTAGGAG+AGG | + | chr1_4:54445776-54445795 | None:intergenic | 50.0% | |
| CGAGGCAAGTAAACAGTCGA+TGG | + | chr1_4:54445845-54445864 | None:intergenic | 50.0% | |
| GTGGAGACAGAACCCATATC+TGG | + | chr1_4:54446041-54446060 | None:intergenic | 50.0% | |
| GTTCAATGCTCTCGGCAGAA+AGG | - | chr1_4:54446252-54446271 | Msa0170450:intron | 50.0% | |
| TGCAGCTTGCCTGATCTTGA+AGG | - | chr1_4:54446654-54446673 | Msa0170450:intron | 50.0% | |
| GTAACGCGTCCTAACAGATC+TGG | - | chr1_4:54447125-54447144 | Msa0170450:CDS | 50.0% | |
| ! | TTCGACGAGTGCTATTCTGC+GGG | - | chr1_4:54447188-54447207 | Msa0170450:CDS | 50.0% |
| TCACCATTTAGGCAGCAGAC+GGG | - | chr1_4:54447242-54447261 | Msa0170450:intron | 50.0% | |
| ATTCCCGTCTGCTGCCTAAA+TGG | + | chr1_4:54447248-54447267 | None:intergenic | 50.0% | |
| !!! | TCTCGGTCCTGGAAGTGTTT+TGG | - | chr1_4:54447345-54447364 | Msa0170450:CDS | 50.0% |
| !! | TTAAGGTGCCGTAGTCCATG+GGG | + | chr1_4:54447843-54447862 | None:intergenic | 50.0% |
| !! | CTTTAAGGTGCCGTAGTCCA+TGG | + | chr1_4:54447845-54447864 | None:intergenic | 50.0% |
| ! | CATGGACTACGGCACCTTAA+AGG | - | chr1_4:54447843-54447862 | Msa0170450:intron | 50.0% |
| CTGCGACAAACTTGGAGTCA+AGG | - | chr1_4:54448071-54448090 | Msa0170450:intron | 50.0% | |
| GCCATCAGTGACCTATGTTG+CGG | - | chr1_4:54448649-54448668 | Msa0170450:intron | 50.0% | |
| ATCAGTGACCTATGTTGCGG+CGG | - | chr1_4:54448652-54448671 | Msa0170450:intron | 50.0% | |
| TATTTCCTCCGCCGCAACAT+AGG | + | chr1_4:54448663-54448682 | None:intergenic | 50.0% | |
| GCTAAAGCTCAACCGAGAAG+AGG | + | chr1_4:54448724-54448743 | None:intergenic | 50.0% | |
| CACACTCCTTAGTCCACGTT+TGG | + | chr1_4:54449263-54449282 | None:intergenic | 50.0% | |
| CTTACCTCCCAGTTGAACTC+CGG | - | chr1_4:54449485-54449504 | Msa0170450:intron | 50.0% | |
| TAATCCGGAGTTCAACTGGG+AGG | + | chr1_4:54449492-54449511 | None:intergenic | 50.0% | |
| CTGGTAATCCGGAGTTCAAC+TGG | + | chr1_4:54449496-54449515 | None:intergenic | 50.0% | |
| TTACCAGAGTCCATTTCCCC+TGG | - | chr1_4:54449509-54449528 | Msa0170450:intron | 50.0% | |
| ! | TTTCCAGGGGAAATGGACTC+TGG | + | chr1_4:54449515-54449534 | None:intergenic | 50.0% |
| CCTCTGATTTCCAGGGGAAA+TGG | + | chr1_4:54449522-54449541 | None:intergenic | 50.0% | |
| CCATTTCCCCTGGAAATCAG+AGG | - | chr1_4:54449519-54449538 | Msa0170450:intron | 50.0% | |
| ! | AGAGAGAGGGGTTCTGACTT+TGG | + | chr1_4:54449940-54449959 | None:intergenic | 50.0% |
| CCTGAGCCAGCTGATATGAC+AGG | + | chr1_4:54442405-54442424 | None:intergenic | 55.0% | |
| ! | CCTGTCATATCAGCTGGCTC+AGG | - | chr1_4:54442402-54442421 | Msa0170450:intron | 55.0% |
| ! | CCACGCCTGTGTAATGGAGA+AGG | + | chr1_4:54442434-54442453 | None:intergenic | 55.0% |
| CCTTCTCCATTACACAGGCG+TGG | - | chr1_4:54442431-54442450 | Msa0170450:intron | 55.0% | |
| AAACCCTGTAGGGAGATGGC+AGG | - | chr1_4:54442637-54442656 | Msa0170450:intron | 55.0% | |
| CAACCTGCCATCTCCCTACA+GGG | + | chr1_4:54442643-54442662 | None:intergenic | 55.0% | |
| TCAACCTGCCATCTCCCTAC+AGG | + | chr1_4:54442644-54442663 | None:intergenic | 55.0% | |
| CGAAATGCCGCATGTGCTAC+AGG | - | chr1_4:54442957-54442976 | Msa0170450:intron | 55.0% | |
| TGTCGACCCTGTAGCACATG+CGG | + | chr1_4:54442967-54442986 | None:intergenic | 55.0% | |
| !! | CACGAGTTTGCTGTTCGCCT+AGG | - | chr1_4:54444668-54444687 | Msa0170450:CDS | 55.0% |
| ACCTAGCTGAAGCAGTGCCT+AGG | + | chr1_4:54444688-54444707 | None:intergenic | 55.0% | |
| !!! | GATTTTAGAATGGGGGGGGG+GGG | - | chr1_4:54445471-54445490 | Msa0170450:intron | 55.0% |
| !!! | ATTTTAGAATGGGGGGGGGG+GGG | - | chr1_4:54445472-54445491 | Msa0170450:intron | 55.0% |
| TAGGCAGCAGACGGGAATGT+AGG | - | chr1_4:54447250-54447269 | Msa0170450:intron | 55.0% | |
| GCCGCAACATAGGTCACTGA+TGG | + | chr1_4:54448653-54448672 | None:intergenic | 55.0% | |
| TGCAAAGCTGCAGGCCTAGA+AGG | - | chr1_4:54449175-54449194 | Msa0170450:intron | 55.0% | |
| GCATGTGCTACAGGGTCGAC+AGG | - | chr1_4:54442966-54442985 | Msa0170450:intron | 60.0% | |
| ! | GCCTAGGCACTGCTTCAGCT+AGG | - | chr1_4:54444684-54444703 | Msa0170450:CDS | 60.0% |
| !!! | TTTTAGAATGGGGGGGGGGG+GGG | - | chr1_4:54445473-54445492 | Msa0170450:intron | 60.0% |
| AGTGACCTATGTTGCGGCGG+AGG | - | chr1_4:54448655-54448674 | Msa0170450:intron | 60.0% | |
| ! | TTTAGAATGGGGGGGGGGGG+GGG | - | chr1_4:54445474-54445493 | Msa0170450:intron | 65.0% |
| TTAGAATGGGGGGGGGGGGG+GGG | - | chr1_4:54445475-54445494 | Msa0170450:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 54441736 | 54450287 | 54441736 | ID=Msa0170450;Name=Msa0170450 |
| chr1_4 | mRNA | 54441736 | 54450287 | 54441736 | ID=Msa0170450-mRNA-1;Parent=Msa0170450;Name=Msa0170450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=106|0.95|0.95|1|1|1|23|264|836 |
| chr1_4 | exon | 54441736 | 54442101 | 54441736 | ID=Msa0170450-mRNA-1:exon:16293;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54442186 | 54442296 | 54442186 | ID=Msa0170450-mRNA-1:exon:16292;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54443147 | 54443220 | 54443147 | ID=Msa0170450-mRNA-1:exon:16291;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54443319 | 54443388 | 54443319 | ID=Msa0170450-mRNA-1:exon:16290;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54443488 | 54443535 | 54443488 | ID=Msa0170450-mRNA-1:exon:16289;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54444048 | 54444191 | 54444048 | ID=Msa0170450-mRNA-1:exon:16288;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54444284 | 54444376 | 54444284 | ID=Msa0170450-mRNA-1:exon:16287;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54444657 | 54444770 | 54444657 | ID=Msa0170450-mRNA-1:exon:16286;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54444869 | 54445048 | 54444869 | ID=Msa0170450-mRNA-1:exon:16285;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54445140 | 54445220 | 54445140 | ID=Msa0170450-mRNA-1:exon:16284;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54445310 | 54445386 | 54445310 | ID=Msa0170450-mRNA-1:exon:16283;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54445711 | 54445858 | 54445711 | ID=Msa0170450-mRNA-1:exon:16282;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54445953 | 54446037 | 54445953 | ID=Msa0170450-mRNA-1:exon:16281;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54446772 | 54446858 | 54446772 | ID=Msa0170450-mRNA-1:exon:16280;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54447123 | 54447227 | 54447123 | ID=Msa0170450-mRNA-1:exon:16279;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54447318 | 54447472 | 54447318 | ID=Msa0170450-mRNA-1:exon:16278;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54447547 | 54447645 | 54447547 | ID=Msa0170450-mRNA-1:exon:16277;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54447758 | 54447833 | 54447758 | ID=Msa0170450-mRNA-1:exon:16276;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54448583 | 54448654 | 54448583 | ID=Msa0170450-mRNA-1:exon:16275;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54448758 | 54449044 | 54448758 | ID=Msa0170450-mRNA-1:exon:16274;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54449254 | 54449375 | 54449254 | ID=Msa0170450-mRNA-1:exon:16273;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54449550 | 54449632 | 54449550 | ID=Msa0170450-mRNA-1:exon:16272;Parent=Msa0170450-mRNA-1 |
| chr1_4 | exon | 54450084 | 54450287 | 54450084 | ID=Msa0170450-mRNA-1:exon:16271;Parent=Msa0170450-mRNA-1 |
| chr1_4 | five_prime_UTR | 54450182 | 54450287 | 54450182 | ID=Msa0170450-mRNA-1:five_prime_utr;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54450084 | 54450181 | 54450084 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54449550 | 54449632 | 54449550 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54449254 | 54449375 | 54449254 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54448758 | 54449044 | 54448758 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54448583 | 54448654 | 54448583 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54447758 | 54447833 | 54447758 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54447547 | 54447645 | 54447547 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54447318 | 54447472 | 54447318 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54447123 | 54447227 | 54447123 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54446772 | 54446858 | 54446772 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54445953 | 54446037 | 54445953 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54445711 | 54445858 | 54445711 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54445310 | 54445386 | 54445310 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54445140 | 54445220 | 54445140 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54444869 | 54445048 | 54444869 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54444657 | 54444770 | 54444657 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54444284 | 54444376 | 54444284 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54444048 | 54444191 | 54444048 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54443488 | 54443535 | 54443488 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54443319 | 54443388 | 54443319 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54443147 | 54443220 | 54443147 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54442186 | 54442296 | 54442186 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | CDS | 54442000 | 54442101 | 54442000 | ID=Msa0170450-mRNA-1:cds;Parent=Msa0170450-mRNA-1 |
| chr1_4 | three_prime_UTR | 54441736 | 54441999 | 54441736 | ID=Msa0170450-mRNA-1:three_prime_utr;Parent=Msa0170450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
