AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026120 MtrunA17_Chr1g0181121 98.536 683 10 0 28 710 1 683 0.0 1404
Msa0026120 MtrunA17_Chr2g0326871 60.311 708 264 5 7 708 7 703 0.0 898
Msa0026120 MtrunA17_Chr4g0028861 65.773 634 195 4 1 629 66 682 0.0 862
Msa0026120 MtrunA17_Chr2g0305771 54.505 666 284 6 58 710 30 689 0.0 741
Msa0026120 MtrunA17_Chr3g0139071 53.433 670 291 7 58 709 60 726 0.0 721
Msa0026120 MtrunA17_Chr4g0073941 51.802 666 300 10 51 709 78 729 0.0 692
Msa0026120 MtrunA17_Chr7g0228181 49.273 688 312 7 46 708 5 680 0.0 692
Msa0026120 MtrunA17_Chr1g0158861 50.143 700 313 10 18 709 44 715 0.0 686
Msa0026120 MtrunA17_Chr3g0126541 51.271 669 300 10 48 709 63 712 0.0 681
Msa0026120 MtrunA17_Chr3g0125651 50.153 652 309 4 71 706 36 687 0.0 676
Msa0026120 MtrunA17_Chr4g0001481 49.569 696 322 14 31 710 59 741 0.0 642
Msa0026120 MtrunA17_Chr7g0275581 49.163 657 300 11 7 638 7 654 0.0 632
Msa0026120 MtrunA17_Chr8g0347121 45.735 680 309 11 1 637 1 663 0.0 598
Msa0026120 MtrunA17_Chr8g0360821 35.993 614 358 13 73 664 64 664 1.76e-117 367
Msa0026120 MtrunA17_Chr6g0480851 36.498 611 363 10 47 641 160 761 9.53e-111 352
Msa0026120 MtrunA17_Chr6g0480781 35.959 584 345 15 71 636 169 741 1.53e-110 352
Msa0026120 MtrunA17_Chr6g0481021 36.573 607 353 12 47 631 99 695 5.70e-109 346
Msa0026120 MtrunA17_Chr6g0480671 38.966 580 315 12 71 627 193 756 1.50e-108 347
Msa0026120 MtrunA17_Chr7g0218341 35.788 584 353 10 71 638 109 686 7.13e-105 335
Msa0026120 MtrunA17_Chr2g0318561 37.307 453 265 8 186 625 2 448 3.30e-93 298
Msa0026120 MtrunA17_Chr6g0480741 33.390 584 353 12 71 634 115 682 3.14e-89 293
Msa0026120 MtrunA17_Chr6g0480681 30.628 653 390 14 29 635 73 708 5.49e-81 273
Msa0026120 MtrunA17_Chr2g0326861 57.513 193 82 0 145 337 14 206 1.36e-77 248
Msa0026120 MtrunA17_Chr5g0395421 37.784 352 191 8 268 605 18 355 7.90e-55 192
Msa0026120 MtrunA17_Chr2g0326851 50.704 142 59 2 567 708 3 133 1.67e-41 147
Msa0026120 MtrunA17_Chr6g0480771 35.714 252 139 7 388 626 12 253 3.73e-34 132
Msa0026120 MtrunA17_Chr6g0480841 39.899 198 99 5 442 626 2 192 5.40e-32 124
Msa0026120 MtrunA17_Chr5g0395411 33.000 200 120 3 71 269 172 358 1.38e-31 127
Msa0026120 MtrunA17_Chr6g0480751 37.313 134 83 1 71 203 98 231 3.89e-23 99.0
Msa0026120 MtrunA17_Chr6g0480791 36.885 122 75 2 71 190 172 293 1.08e-19 90.5
Msa0026120 MtrunA17_Chr4g0063141 21.605 486 282 16 70 545 45 441 1.49e-18 90.5
Msa0026120 MtrunA17_Chr2g0277651 20.619 485 305 12 122 599 106 517 3.07e-16 83.2
Msa0026120 MtrunA17_Chr6g0480821 28.824 170 112 6 187 352 25 189 3.25e-16 78.2
Msa0026120 MtrunA17_Chr5g0434371 26.257 179 129 2 342 520 282 457 3.43e-15 79.7
Msa0026120 MtrunA17_Chr2g0318551 31.609 174 102 8 61 231 54 213 4.10e-15 75.1
Msa0026120 MtrunA17_Chr3g0138671 22.831 219 165 3 341 559 241 455 1.44e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026120 AT2G28260.1 59.886 703 252 2 6 708 6 678 0.0 874
Msa0026120 AT2G28260.2 62.405 657 220 1 52 708 9 638 0.0 866
Msa0026120 AT2G24610.1 50.826 726 326 10 8 709 8 726 0.0 715
Msa0026120 AT2G24610.2 50.691 724 326 9 10 709 25 741 0.0 712
Msa0026120 AT4G30360.1 52.154 650 300 5 71 710 71 719 0.0 705
Msa0026120 AT2G23980.9 49.566 692 334 8 29 709 59 746 0.0 696
Msa0026120 AT2G23980.10 49.566 692 334 8 29 709 59 746 0.0 696
Msa0026120 AT2G23980.1 49.566 692 334 8 29 709 59 746 0.0 696
Msa0026120 AT2G23980.4 49.566 692 334 8 29 709 59 746 0.0 696
Msa0026120 AT2G23980.5 49.566 692 334 8 29 709 59 746 0.0 696
Msa0026120 AT2G23980.6 49.566 692 334 8 29 709 32 719 0.0 696
Msa0026120 AT4G30560.1 51.347 668 298 7 51 709 82 731 0.0 688
Msa0026120 AT4G30560.4 51.347 668 298 7 51 709 82 731 0.0 688
Msa0026120 AT5G57940.1 51.111 675 289 9 51 708 67 717 0.0 688
Msa0026120 AT5G57940.2 51.111 675 289 9 51 708 67 717 0.0 688
Msa0026120 AT4G30560.5 51.347 668 298 7 51 709 56 705 0.0 687
Msa0026120 AT4G30560.2 51.347 668 298 7 51 709 56 705 0.0 687
Msa0026120 AT4G30560.3 51.347 668 298 7 51 709 56 705 0.0 687
Msa0026120 AT5G57940.3 51.111 675 289 9 51 708 60 710 0.0 687
Msa0026120 AT1G15990.1 49.211 697 327 10 34 708 47 738 0.0 685
Msa0026120 AT2G23980.3 48.112 715 333 9 29 709 59 769 0.0 683
Msa0026120 AT2G23980.2 48.112 715 333 9 29 709 59 769 0.0 683
Msa0026120 AT2G23980.8 48.112 715 333 9 29 709 59 769 0.0 683
Msa0026120 AT2G23980.7 48.112 715 333 9 29 709 59 769 0.0 683
Msa0026120 AT1G19780.1 51.111 675 308 10 55 710 80 751 0.0 682
Msa0026120 AT5G53130.1 51.553 644 296 7 71 709 84 716 0.0 671
Msa0026120 AT3G48010.1 53.833 600 261 6 47 636 26 619 0.0 667
Msa0026120 AT5G14870.1 47.839 671 313 7 71 710 40 704 0.0 661
Msa0026120 AT1G01340.1 50.156 642 309 6 71 706 63 699 0.0 658
Msa0026120 AT1G01340.2 50.156 642 309 6 71 706 68 704 0.0 658
Msa0026120 AT4G01010.1 50.000 672 315 9 40 706 37 692 0.0 651
Msa0026120 AT4G01010.2 50.000 672 315 9 40 706 37 692 0.0 651
Msa0026120 AT2G46430.1 48.382 649 310 10 71 709 72 705 0.0 609
Msa0026120 AT2G46430.2 48.382 649 310 10 71 709 72 705 0.0 609
Msa0026120 AT1G19780.2 51.845 542 241 8 186 710 2 540 0.0 548
Msa0026120 AT2G46440.1 45.250 579 300 8 82 653 40 608 3.26e-162 481
Msa0026120 AT2G46450.4 40.989 566 314 8 82 639 40 593 9.61e-149 448
Msa0026120 AT2G46450.1 40.989 566 314 8 82 639 40 593 9.61e-149 448
Msa0026120 AT2G46450.3 39.292 565 302 9 82 639 27 557 2.57e-136 414
Msa0026120 AT2G46450.2 39.292 565 302 9 82 639 40 570 3.53e-136 415
Msa0026120 AT2G46440.2 49.199 437 209 6 223 653 1 430 5.88e-129 390
Msa0026120 AT5G54250.2 35.131 612 374 10 71 664 79 685 2.44e-114 360
Msa0026120 AT5G54250.1 35.131 612 374 10 71 664 79 685 2.44e-114 360
Msa0026120 AT5G54250.4 35.131 612 374 10 71 664 79 685 2.44e-114 360
Msa0026120 AT3G17690.1 34.053 602 370 14 52 638 139 728 2.19e-111 353
Msa0026120 AT5G54250.3 34.477 612 373 11 71 664 79 680 9.34e-109 345
Msa0026120 AT3G17700.1 36.752 585 343 14 52 621 173 745 2.09e-108 347
Msa0026120 AT5G15410.2 35.714 574 343 11 67 621 110 676 2.48e-105 337
Msa0026120 AT5G15410.1 35.714 574 343 11 67 621 111 677 3.48e-105 337
Msa0026120 AT3G17690.2 33.992 506 317 9 52 552 139 632 6.81e-98 315
Msa0026120 AT3G17700.2 36.364 506 306 10 52 553 173 666 6.20e-97 314
Msa0026120 AT3G17690.3 32.115 383 250 7 52 429 139 516 9.52e-65 224
Msa0026120 AT3G02850.3 22.323 439 267 12 82 520 85 449 6.68e-18 88.2
Msa0026120 AT3G02850.2 22.779 439 265 12 82 520 85 449 1.65e-17 87.4
Msa0026120 AT3G02850.1 22.779 439 265 13 82 520 85 449 2.89e-17 86.7
Msa0026120 AT4G22200.1 19.484 426 273 8 121 545 107 463 4.52e-14 76.6
Msa0026120 AT4G22200.2 19.484 426 273 8 121 545 107 463 4.70e-14 76.3
Msa0026120 AT5G37500.4 25.683 183 133 2 342 524 257 436 8.18e-14 75.5
Msa0026120 AT5G37500.3 25.543 184 134 2 342 525 203 383 8.24e-14 75.5
Msa0026120 AT5G37500.2 25.683 183 133 2 342 524 257 436 1.33e-13 75.1
Msa0026120 AT5G37500.1 25.683 183 133 2 342 524 257 436 1.33e-13 75.1

Find 137 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCATCTCGTGTTTC+TGG 0.112326 1_1:+49768386 Msa0026120:CDS
TTAATGATGATGATGATTAA+AGG 0.187181 1_1:+49771533 Msa0026120:CDS
ACATTATTCATATCTATATT+AGG 0.216780 1_1:+49768345 Msa0026120:CDS
GCTGTGATTGTTGCAATTCT+TGG 0.224686 1_1:+49769846 Msa0026120:CDS
CCAAGTATTATTATTGTCTT+TGG 0.233035 1_1:+49769659 Msa0026120:CDS
ATGATGATTAAAGGAAATTT+AGG 0.238886 1_1:+49771542 Msa0026120:exon
TTAAGCCAAGCATTCCTATT+TGG 0.253153 1_1:-49769532 None:intergenic
TCAAGTTATTCAATGTATTC+TGG 0.255289 1_1:+49771415 Msa0026120:CDS
CCTCAATAAGTACTGGAAAA+TGG 0.258411 1_1:-49768921 None:intergenic
ATGTCAAATGTGAAATATTA+TGG 0.260963 1_1:+49771343 Msa0026120:CDS
GAGGACCTAGAATAAATTTA+TGG 0.262159 1_1:+49768171 Msa0026120:CDS
TTACTTGTCTAACTAGATTA+AGG 0.272354 1_1:-49770392 None:intergenic
TTGTTCCATAAATTTATTCT+AGG 0.278851 1_1:-49768176 None:intergenic
TGATGAATTTGCAGCTCTTC+AGG 0.284395 1_1:+49769780 Msa0026120:intron
TTGATATGCTTGGTACATTA+AGG 0.286363 1_1:+49771491 Msa0026120:CDS
ATTGAATAACTTGATCCTTT+TGG 0.295632 1_1:-49771406 None:intergenic
AACAGTCACTTCTTTCAGTT+TGG 0.303420 1_1:+49769586 Msa0026120:CDS
TGCATCAAACTACATGAAAA+AGG 0.316525 1_1:+49768442 Msa0026120:CDS
CTTGTCTTTCAATTGATAAC+AGG 0.322976 1_1:-49769429 None:intergenic
AGCAGTCGGGCGAGGGTCTA+AGG 0.324635 1_1:-49771071 None:intergenic
GCTGTAATTCCAAATATAAA+AGG 0.326602 1_1:+49768857 Msa0026120:CDS
TCATTAAAATCTGGTTCAAT+AGG 0.330248 1_1:-49771517 None:intergenic
GACAATCAAGATAATGATAT+TGG 0.332462 1_1:-49769495 None:intergenic
TATAATGCTAGGTACTCATT+TGG 0.340611 1_1:+49768834 Msa0026120:intron
TTAGGAATGAATAGTTGTTA+TGG 0.342658 1_1:+49771560 Msa0026120:three_prime_UTR
ACCTTCAATCGACCACTATA+CGG 0.343757 1_1:+49770178 Msa0026120:CDS
GGTGGGGATTGAGGAATCTA+AGG 0.352167 1_1:+49769680 Msa0026120:CDS
GAAGCTTAAGTGATCCAAAT+AGG 0.355960 1_1:+49769518 Msa0026120:CDS
CTGCAACATGTGTACTTGTT+AGG 0.369323 1_1:-49769812 None:intergenic
GACAAATGAGGTTAAGGAAA+AGG 0.372638 1_1:+49771306 Msa0026120:CDS
GAAAACTAGTAGGTAGTCTA+AGG 0.374905 1_1:+49771437 Msa0026120:CDS
TGTGTATTAATTAGTATCAT+TGG 0.376461 1_1:+49771612 Msa0026120:three_prime_UTR
CTAGGGTCAAGGATGGAATT+AGG 0.378867 1_1:+49771717 Msa0026120:three_prime_UTR
GAAAGAGACAAATGAGGTTA+AGG 0.381363 1_1:+49771300 Msa0026120:CDS
TTGTTTGATTTCATTGTTTG+TGG 0.391370 1_1:+49768214 Msa0026120:CDS
TTATACAAGCAGCTTGGTTT+CGG 0.394586 1_1:+49771266 Msa0026120:CDS
TCATCATCATCATTAAAATC+TGG 0.395865 1_1:-49771526 None:intergenic
GACGCCATGACCAATTTAGA+TGG 0.405101 1_1:+49770286 Msa0026120:CDS
TCGCGAACTATGCAAGTTCC+TGG 0.405890 1_1:-49770908 None:intergenic
TCAGTTGTTTGCTATGTAAC+CGG 0.409128 1_1:-49771192 None:intergenic
CATCATTACTCCACTTGCCT+TGG 0.413407 1_1:-49768978 None:intergenic
ATGTCACGTCTTAGATCAAC+AGG 0.421675 1_1:-49770354 None:intergenic
GTATTATTATTGTCTTTGGT+GGG 0.441309 1_1:+49769663 Msa0026120:CDS
AAATTTATTCTAGGTCCTCT+AGG 0.441726 1_1:-49768167 None:intergenic
AGTCCTCTTCCATTTGATGA+TGG 0.444375 1_1:-49768092 None:intergenic
ATTGTCTTTGGTGGGGATTG+AGG 0.450681 1_1:+49769671 Msa0026120:CDS
ATATTTCTCTGCACCTCTGC+AGG 0.451022 1_1:+49771381 Msa0026120:CDS
TCTTAATAGCCATTGTCAAA+TGG 0.455145 1_1:-49771760 None:intergenic
ACGACCAACGGTGGTAGAAC+TGG 0.455245 1_1:+49770986 Msa0026120:CDS
GAGTAGCTACCCATCTAAAT+TGG 0.455345 1_1:-49770296 None:intergenic
AGAGGAAGAAGCATGAGATA+TGG 0.455456 1_1:+49771460 Msa0026120:CDS
CTTAAATCAAGCAATCTATC+AGG 0.455643 1_1:+49769550 Msa0026120:CDS
AGTATTATTATTGTCTTTGG+TGG 0.455701 1_1:+49769662 Msa0026120:CDS
GGAAACACAGCAGTCGGGCG+AGG 0.464302 1_1:-49771079 None:intergenic
TCATCTCGTGTTTCTGGTCG+AGG 0.464605 1_1:+49768392 Msa0026120:CDS
GATTGTTGCAATTCTTGGAT+TGG 0.464760 1_1:+49769851 Msa0026120:CDS
CTCACTGTGCGAGTTGATGA+AGG 0.471556 1_1:-49771100 None:intergenic
CAAGGCAAGTGGAGTAATGA+TGG 0.472612 1_1:+49768979 Msa0026120:CDS
ATGTATTCTGGAAAACTAGT+AGG 0.473124 1_1:+49771427 Msa0026120:CDS
GTGATCCAAATAGGAATGCT+TGG 0.473435 1_1:+49769527 Msa0026120:CDS
GTCGCCTGAGCTTATTCTGC+AGG 0.473910 1_1:-49771020 None:intergenic
ATAATGCTAGGTACTCATTT+GGG 0.476442 1_1:+49768835 Msa0026120:intron
GTAGTTTGATGCAATCTTTG+AGG 0.478756 1_1:-49768432 None:intergenic
ATGAATAGTTGTTATGGAGA+AGG 0.485081 1_1:+49771566 Msa0026120:three_prime_UTR
AAGTGTATTGATATGTCAAT+TGG 0.485639 1_1:+49768275 Msa0026120:CDS
AGAAGGTGAAGAAAGTCAAA+TGG 0.488166 1_1:+49768010 Msa0026120:CDS
ATAAACAAGCCATCATCAAA+TGG 0.489789 1_1:+49768083 Msa0026120:CDS
TTGAAAGACAAGATGAATGT+TGG 0.490493 1_1:+49769440 Msa0026120:CDS
ATGAAGAGCATTTCGTCGAC+AGG 0.493141 1_1:-49770938 None:intergenic
GATACAACCTCAATAAGTAC+TGG 0.495573 1_1:-49768928 None:intergenic
TGCTACAAACTTTAAATCCT+CGG 0.498284 1_1:-49771158 None:intergenic
GCCGTATAGTGGTCGATTGA+AGG 0.500147 1_1:-49770179 None:intergenic
CTGTAATTCCAAATATAAAA+GGG 0.501630 1_1:+49768858 Msa0026120:CDS
CCAAAGACAATAATAATACT+TGG 0.503297 1_1:-49769659 None:intergenic
GCACCTCTGCAGGTGCCAAA+AGG 0.504350 1_1:+49771391 Msa0026120:CDS
CAGGAATATACCTGAGGAAG+TGG 0.505032 1_1:-49768494 None:intergenic
TCAGGTAACGAGGGAGCTGC+CGG 0.505935 1_1:-49770251 None:intergenic
GAAATGCTCTTCATCGTTCG+AGG 0.508603 1_1:+49770947 Msa0026120:CDS
TCATCCATCTGATCAAATAG+TGG 0.519800 1_1:-49770836 None:intergenic
CAGAAAGATGGATGCATCAC+CGG 0.521281 1_1:+49770232 Msa0026120:CDS
TTAATTAGTATCATTGGTAG+CGG 0.523534 1_1:+49771618 Msa0026120:three_prime_UTR
ATCAAGGCATGTAGTTCGCC+TGG 0.524733 1_1:+49768895 Msa0026120:CDS
TTAGATTCTATTCACATCAG+TGG 0.525876 1_1:+49771224 Msa0026120:CDS
CCACTCTTCCAGCCGTATAG+TGG 0.529262 1_1:-49770190 None:intergenic
TGCAGCACTACCACTTCCTC+AGG 0.529548 1_1:+49768484 Msa0026120:CDS
ACTGGTAAGTAAAAGAAAAG+TGG 0.529988 1_1:-49768239 None:intergenic
TCAATCGACCACTATACGGC+TGG 0.530054 1_1:+49770182 Msa0026120:CDS
TATTATTATTGTCTTTGGTG+GGG 0.530464 1_1:+49769664 Msa0026120:CDS
ATTCACATCAGTGGAGGACA+TGG 0.530701 1_1:+49771233 Msa0026120:CDS
TTGGTTATCTTAGATGATAG+AGG 0.537065 1_1:-49768959 None:intergenic
GGTACCACTATTTGATCAGA+TGG 0.540996 1_1:+49770832 Msa0026120:intron
CTGTTATATCAAGAGTCGTA+AGG 0.542793 1_1:+49767701 Msa0026120:CDS
GTTCCTGGAGTGCATAGAGT+TGG 0.542992 1_1:-49770893 None:intergenic
ATGAAGGAAACACAGCAGTC+GGG 0.545943 1_1:-49771084 None:intergenic
AATTTATTCTAGGTCCTCTA+GGG 0.546116 1_1:-49768166 None:intergenic
CGACCAGAAACACGAGATGA+AGG 0.546693 1_1:-49768389 None:intergenic
CCACTATACGGCTGGAAGAG+TGG 0.546695 1_1:+49770190 Msa0026120:CDS
TATTTGATCAGATGGATGAC+AGG 0.547337 1_1:+49770840 Msa0026120:CDS
GATGAAGGAAACACAGCAGT+CGG 0.548177 1_1:-49771085 None:intergenic
TTAGATTCTTGCACGACCAA+CGG 0.554372 1_1:+49770974 Msa0026120:CDS
GAAGGACAGATACAGAAAGA+TGG 0.556176 1_1:+49770220 Msa0026120:CDS
GAGAATGAAAGAGACAAATG+AGG 0.556459 1_1:+49771294 Msa0026120:CDS
AAATGCTTCGACTTCTGTGA+TGG 0.558128 1_1:-49771125 None:intergenic
TGGAAGAGTGGCGAATAAGA+AGG 0.567637 1_1:+49770202 Msa0026120:CDS
GTCTAACTAGATTAAGGCAA+AGG 0.567848 1_1:-49770386 None:intergenic
AACACCTGCAGAATAAGCTC+AGG 0.570561 1_1:+49771016 Msa0026120:CDS
AAGCCATCATCAAATGGAAG+AGG 0.574296 1_1:+49768089 Msa0026120:CDS
GGTGCTGAACTTGATATGCT+TGG 0.578331 1_1:+49771481 Msa0026120:CDS
GAAACACAGCAGTCGGGCGA+GGG 0.579139 1_1:-49771078 None:intergenic
TTGTAGCAGCACAATTCCGC+CGG 0.583306 1_1:+49771173 Msa0026120:CDS
CTACCCATCTAAATTGGTCA+TGG 0.585160 1_1:-49770290 None:intergenic
ACGCCATGACCAATTTAGAT+GGG 0.585828 1_1:+49770287 Msa0026120:CDS
AAACCAACTCTATGCACTCC+AGG 0.588925 1_1:+49770890 Msa0026120:CDS
GATTCTATTCACATCAGTGG+AGG 0.595512 1_1:+49771227 Msa0026120:CDS
GGGCGAGGGTCTAAGGCCCA+TGG 0.598732 1_1:-49771064 None:intergenic
AGCTACTCGTGGAGTTGACG+AGG 0.602552 1_1:+49770311 Msa0026120:CDS
TGTTAGATGCAATATGTGAA+AGG 0.604722 1_1:+49770864 Msa0026120:CDS
AGCATTTGCACTCATTGCCG+AGG 0.611919 1_1:+49771141 Msa0026120:CDS
CTGATGTGAATAGAATCTAA+AGG 0.613822 1_1:-49771221 None:intergenic
TCTAAGATAACCAAGGCAAG+TGG 0.615553 1_1:+49768968 Msa0026120:CDS
ATGAGGAGTGAATACAAGCA+TGG 0.616963 1_1:+49768050 Msa0026120:CDS
CTAGTAGGTAGTCTAAGGAG+AGG 0.620088 1_1:+49771442 Msa0026120:CDS
GCAGCTCCCTCGTTACCTGA+AGG 0.626636 1_1:+49770254 Msa0026120:CDS
AGATAATGATATTGGCAATG+TGG 0.627476 1_1:-49769487 None:intergenic
TTTAGATGGGTAGCTACTCG+TGG 0.627869 1_1:+49770300 Msa0026120:CDS
GGTCAGAAATGATTGCATCA+AGG 0.631571 1_1:+49768879 Msa0026120:CDS
ATAAGCTCAGGCGACTTCTG+CGG 0.636175 1_1:+49771028 Msa0026120:CDS
TAACTAGATTAAGGCAAAGG+TGG 0.642852 1_1:-49770383 None:intergenic
GTTGTTTGCTATGTAACCGG+CGG 0.650163 1_1:-49771189 None:intergenic
AAAACCAGTTCTACCACCGT+TGG 0.651859 1_1:-49770990 None:intergenic
AGTACTGGAAAATGGACACC+AGG 0.653611 1_1:-49768913 None:intergenic
TTCACATCAGTGGAGGACAT+GGG 0.654472 1_1:+49771234 Msa0026120:CDS
TCTATCATCTAAGATAACCA+AGG 0.655489 1_1:+49768961 Msa0026120:CDS
TGAAGAGCATTTCGTCGACA+GGG 0.658976 1_1:-49770937 None:intergenic
GGAACTTGCATAGTTCGCGA+AGG 0.669380 1_1:+49770911 Msa0026120:CDS
AAATGAGTGCATATGAGATG+AGG 0.698871 1_1:+49768033 Msa0026120:CDS
GATTCTTGCACGACCAACGG+TGG 0.711618 1_1:+49770977 Msa0026120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATTACAATGTTAAA+GGG - chr1_1:49767740-49767759 None:intergenic 10.0%
!!! TTTTTTTACAAAAATATGTT+TGG + chr1_1:49767924-49767943 Msa0026120:intron 10.0%
!! ATATTAATTACAATGTTAAA+GGG - chr1_1:49767740-49767759 None:intergenic 10.0%
!!! TTTTTTTACAAAAATATGTT+TGG + chr1_1:49767924-49767943 Msa0026120:intron 10.0%
!! CATATTAATTACAATGTTAA+AGG - chr1_1:49767741-49767760 None:intergenic 15.0%
!! ACATTATTCATATCTATATT+AGG + chr1_1:49768345-49768364 Msa0026120:CDS 15.0%
!! GATAATTAAAAATGAATATC+AGG - chr1_1:49768516-49768535 None:intergenic 15.0%
!! AATAAGCTAAAAACAATTTA+TGG - chr1_1:49769228-49769247 None:intergenic 15.0%
!! TATGAAAATAAAACAACTTA+TGG + chr1_1:49770085-49770104 Msa0026120:intron 15.0%
!! CAATAAAAGAAATAATGTAA+CGG - chr1_1:49770150-49770169 None:intergenic 15.0%
!! CATATTAATTACAATGTTAA+AGG - chr1_1:49767741-49767760 None:intergenic 15.0%
!! ACATTATTCATATCTATATT+AGG + chr1_1:49768345-49768364 Msa0026120:CDS 15.0%
!! GATAATTAAAAATGAATATC+AGG - chr1_1:49768516-49768535 None:intergenic 15.0%
!! AATAAGCTAAAAACAATTTA+TGG - chr1_1:49769228-49769247 None:intergenic 15.0%
!! TATGAAAATAAAACAACTTA+TGG + chr1_1:49770085-49770104 Msa0026120:intron 15.0%
!! CAATAAAAGAAATAATGTAA+CGG - chr1_1:49770150-49770169 None:intergenic 15.0%
!! TTGTTCCATAAATTTATTCT+AGG - chr1_1:49768179-49768198 None:intergenic 20.0%
!!! AAAATATGAATTTTACCACA+TGG + chr1_1:49768790-49768809 Msa0026120:intron 20.0%
!! GATAATTCATATATAATGCT+AGG + chr1_1:49768823-49768842 Msa0026120:intron 20.0%
!! CTGTAATTCCAAATATAAAA+GGG + chr1_1:49768858-49768877 Msa0026120:CDS 20.0%
!!! GTATTACGAAAAACATTTTT+CGG - chr1_1:49769074-49769093 None:intergenic 20.0%
!!! ACCTTTTCTTTATTTCAAAA+AGG + chr1_1:49769387-49769406 Msa0026120:intron 20.0%
!!! ACCTTTTTGAAATAAAGAAA+AGG - chr1_1:49769391-49769410 None:intergenic 20.0%
!!! CTTTATTTCAAAAAGGTTTT+AGG + chr1_1:49769394-49769413 Msa0026120:intron 20.0%
!! AGAATTGGTTAGAATAAATA+TGG - chr1_1:49769759-49769778 None:intergenic 20.0%
!! ATTCACTAATTTAGATTAGA+CGG + chr1_1:49770493-49770512 Msa0026120:intron 20.0%
!! AAAAATTATGTGATTAAGAG+TGG - chr1_1:49770703-49770722 None:intergenic 20.0%
!!! ATTAAGAATGAAGTACTAAT+TGG + chr1_1:49770795-49770814 Msa0026120:intron 20.0%
!! ATGTCAAATGTGAAATATTA+TGG + chr1_1:49771343-49771362 Msa0026120:CDS 20.0%
!!! TTAATGATGATGATGATTAA+AGG + chr1_1:49771533-49771552 Msa0026120:CDS 20.0%
!! ATGATGATTAAAGGAAATTT+AGG + chr1_1:49771542-49771561 Msa0026120:exon 20.0%
!! TGTGTATTAATTAGTATCAT+TGG + chr1_1:49771612-49771631 Msa0026120:three_prime_UTR 20.0%
!!! GCATAACTTATATCAATTTT+AGG + chr1_1:49771694-49771713 Msa0026120:three_prime_UTR 20.0%
!! TTGTTCCATAAATTTATTCT+AGG - chr1_1:49768179-49768198 None:intergenic 20.0%
!!! AAAATATGAATTTTACCACA+TGG + chr1_1:49768790-49768809 Msa0026120:intron 20.0%
!! GATAATTCATATATAATGCT+AGG + chr1_1:49768823-49768842 Msa0026120:intron 20.0%
!! CTGTAATTCCAAATATAAAA+GGG + chr1_1:49768858-49768877 Msa0026120:CDS 20.0%
!!! GTATTACGAAAAACATTTTT+CGG - chr1_1:49769074-49769093 None:intergenic 20.0%
!!! ACCTTTTCTTTATTTCAAAA+AGG + chr1_1:49769387-49769406 Msa0026120:intron 20.0%
!!! ACCTTTTTGAAATAAAGAAA+AGG - chr1_1:49769391-49769410 None:intergenic 20.0%
!!! CTTTATTTCAAAAAGGTTTT+AGG + chr1_1:49769394-49769413 Msa0026120:intron 20.0%
!! AGAATTGGTTAGAATAAATA+TGG - chr1_1:49769759-49769778 None:intergenic 20.0%
!! ATTCACTAATTTAGATTAGA+CGG + chr1_1:49770493-49770512 Msa0026120:intron 20.0%
!! AAAAATTATGTGATTAAGAG+TGG - chr1_1:49770703-49770722 None:intergenic 20.0%
!!! ATTAAGAATGAAGTACTAAT+TGG + chr1_1:49770795-49770814 Msa0026120:intron 20.0%
!! ATGTCAAATGTGAAATATTA+TGG + chr1_1:49771343-49771362 Msa0026120:CDS 20.0%
!!! TTAATGATGATGATGATTAA+AGG + chr1_1:49771533-49771552 Msa0026120:CDS 20.0%
!! ATGATGATTAAAGGAAATTT+AGG + chr1_1:49771542-49771561 Msa0026120:exon 20.0%
!! TGTGTATTAATTAGTATCAT+TGG + chr1_1:49771612-49771631 Msa0026120:three_prime_UTR 20.0%
!!! GCATAACTTATATCAATTTT+AGG + chr1_1:49771694-49771713 Msa0026120:three_prime_UTR 20.0%
! GAAAAAGAGAAATTACAAGA+AGG + chr1_1:49767993-49768012 Msa0026120:CDS 25.0%
!! TTGTTTGATTTCATTGTTTG+TGG + chr1_1:49768214-49768233 Msa0026120:CDS 25.0%
!! AAGTGTATTGATATGTCAAT+TGG + chr1_1:49768275-49768294 Msa0026120:CDS 25.0%
!! ACTACATGAAAAAGGAATTT+TGG + chr1_1:49768450-49768469 Msa0026120:CDS 25.0%
! TATGTTTAAATGTTCTGTGT+TGG + chr1_1:49768711-49768730 Msa0026120:intron 25.0%
!!! TATTTTAATTACGCGAAGAA+CGG - chr1_1:49768776-49768795 None:intergenic 25.0%
! GCTGTAATTCCAAATATAAA+AGG + chr1_1:49768857-49768876 Msa0026120:CDS 25.0%
!! ATTTCTGACCCTTTTATATT+TGG - chr1_1:49768869-49768888 None:intergenic 25.0%
! GACAATCAAGATAATGATAT+TGG - chr1_1:49769498-49769517 None:intergenic 25.0%
! CCAAAGACAATAATAATACT+TGG - chr1_1:49769662-49769681 None:intergenic 25.0%
! CCAAGTATTATTATTGTCTT+TGG + chr1_1:49769659-49769678 Msa0026120:CDS 25.0%
! AGTATTATTATTGTCTTTGG+TGG + chr1_1:49769662-49769681 Msa0026120:CDS 25.0%
! GTATTATTATTGTCTTTGGT+GGG + chr1_1:49769663-49769682 Msa0026120:CDS 25.0%
! TATTATTATTGTCTTTGGTG+GGG + chr1_1:49769664-49769683 Msa0026120:CDS 25.0%
! TTACTTGTCTAACTAGATTA+AGG - chr1_1:49770395-49770414 None:intergenic 25.0%
!! GCTTTTTATTACACAGATTA+TGG + chr1_1:49770449-49770468 Msa0026120:intron 25.0%
! TTCTAAATCAGTAACAATTG+TGG + chr1_1:49770568-49770587 Msa0026120:intron 25.0%
! ATATTCCAGAAATTCATTCA+TGG + chr1_1:49770603-49770622 Msa0026120:intron 25.0%
!! ATTGAATAACTTGATCCTTT+TGG - chr1_1:49771409-49771428 None:intergenic 25.0%
! TCAAGTTATTCAATGTATTC+TGG + chr1_1:49771415-49771434 Msa0026120:CDS 25.0%
!! TCATTAAAATCTGGTTCAAT+AGG - chr1_1:49771520-49771539 None:intergenic 25.0%
! TCATCATCATCATTAAAATC+TGG - chr1_1:49771529-49771548 None:intergenic 25.0%
! TTAGGAATGAATAGTTGTTA+TGG + chr1_1:49771560-49771579 Msa0026120:three_prime_UTR 25.0%
! TTAATTAGTATCATTGGTAG+CGG + chr1_1:49771618-49771637 Msa0026120:three_prime_UTR 25.0%
!! ACTTATATCAATTTTAGGCT+AGG + chr1_1:49771699-49771718 Msa0026120:three_prime_UTR 25.0%
!! CTTATATCAATTTTAGGCTA+GGG + chr1_1:49771700-49771719 Msa0026120:three_prime_UTR 25.0%
! GAAAAAGAGAAATTACAAGA+AGG + chr1_1:49767993-49768012 Msa0026120:CDS 25.0%
!! TTGTTTGATTTCATTGTTTG+TGG + chr1_1:49768214-49768233 Msa0026120:CDS 25.0%
!! AAGTGTATTGATATGTCAAT+TGG + chr1_1:49768275-49768294 Msa0026120:CDS 25.0%
!! ACTACATGAAAAAGGAATTT+TGG + chr1_1:49768450-49768469 Msa0026120:CDS 25.0%
! TATGTTTAAATGTTCTGTGT+TGG + chr1_1:49768711-49768730 Msa0026120:intron 25.0%
!!! TATTTTAATTACGCGAAGAA+CGG - chr1_1:49768776-49768795 None:intergenic 25.0%
! GCTGTAATTCCAAATATAAA+AGG + chr1_1:49768857-49768876 Msa0026120:CDS 25.0%
!! ATTTCTGACCCTTTTATATT+TGG - chr1_1:49768869-49768888 None:intergenic 25.0%
! GACAATCAAGATAATGATAT+TGG - chr1_1:49769498-49769517 None:intergenic 25.0%
! CCAAAGACAATAATAATACT+TGG - chr1_1:49769662-49769681 None:intergenic 25.0%
! CCAAGTATTATTATTGTCTT+TGG + chr1_1:49769659-49769678 Msa0026120:CDS 25.0%
! AGTATTATTATTGTCTTTGG+TGG + chr1_1:49769662-49769681 Msa0026120:CDS 25.0%
! GTATTATTATTGTCTTTGGT+GGG + chr1_1:49769663-49769682 Msa0026120:CDS 25.0%
! TATTATTATTGTCTTTGGTG+GGG + chr1_1:49769664-49769683 Msa0026120:CDS 25.0%
! TTACTTGTCTAACTAGATTA+AGG - chr1_1:49770395-49770414 None:intergenic 25.0%
!! GCTTTTTATTACACAGATTA+TGG + chr1_1:49770449-49770468 Msa0026120:intron 25.0%
! TTCTAAATCAGTAACAATTG+TGG + chr1_1:49770568-49770587 Msa0026120:intron 25.0%
! ATATTCCAGAAATTCATTCA+TGG + chr1_1:49770603-49770622 Msa0026120:intron 25.0%
!! ATTGAATAACTTGATCCTTT+TGG - chr1_1:49771409-49771428 None:intergenic 25.0%
! TCAAGTTATTCAATGTATTC+TGG + chr1_1:49771415-49771434 Msa0026120:CDS 25.0%
!! TCATTAAAATCTGGTTCAAT+AGG - chr1_1:49771520-49771539 None:intergenic 25.0%
! TCATCATCATCATTAAAATC+TGG - chr1_1:49771529-49771548 None:intergenic 25.0%
! TTAGGAATGAATAGTTGTTA+TGG + chr1_1:49771560-49771579 Msa0026120:three_prime_UTR 25.0%
! TTAATTAGTATCATTGGTAG+CGG + chr1_1:49771618-49771637 Msa0026120:three_prime_UTR 25.0%
!! ACTTATATCAATTTTAGGCT+AGG + chr1_1:49771699-49771718 Msa0026120:three_prime_UTR 25.0%
!! CTTATATCAATTTTAGGCTA+GGG + chr1_1:49771700-49771719 Msa0026120:three_prime_UTR 25.0%
CTTGAGCTATACAACAAAAA+TGG + chr1_1:49767675-49767694 Msa0026120:exon 30.0%
ATAAACAAGCCATCATCAAA+TGG + chr1_1:49768083-49768102 Msa0026120:CDS 30.0%
AATTTATTCTAGGTCCTCTA+GGG - chr1_1:49768169-49768188 None:intergenic 30.0%
AAATTTATTCTAGGTCCTCT+AGG - chr1_1:49768170-49768189 None:intergenic 30.0%
GAGGACCTAGAATAAATTTA+TGG + chr1_1:49768171-49768190 Msa0026120:CDS 30.0%
ACTGGTAAGTAAAAGAAAAG+TGG - chr1_1:49768242-49768261 None:intergenic 30.0%
TGCATCAAACTACATGAAAA+AGG + chr1_1:49768442-49768461 Msa0026120:CDS 30.0%
TTATCAAATTGTTAGCCATG+TGG - chr1_1:49768808-49768827 None:intergenic 30.0%
TATAATGCTAGGTACTCATT+TGG + chr1_1:49768834-49768853 Msa0026120:intron 30.0%
ATAATGCTAGGTACTCATTT+GGG + chr1_1:49768835-49768854 Msa0026120:intron 30.0%
TTGGTTATCTTAGATGATAG+AGG - chr1_1:49768962-49768981 None:intergenic 30.0%
! TCTATCATCTAAGATAACCA+AGG + chr1_1:49768961-49768980 Msa0026120:CDS 30.0%
! AGTAATGATGGAAAAAGCTT+GGG + chr1_1:49768991-49769010 Msa0026120:CDS 30.0%
CTTATTTCCGTAAGTTCTAT+AGG + chr1_1:49769242-49769261 Msa0026120:intron 30.0%
AAGCTATCCTATAGAACTTA+CGG - chr1_1:49769252-49769271 None:intergenic 30.0%
TAAGAAATGAATCAGAAGCA+AGG - chr1_1:49769367-49769386 None:intergenic 30.0%
!!! AAAAGGTTTTAGGATCAACT+TGG + chr1_1:49769404-49769423 Msa0026120:intron 30.0%
! CTTGTCTTTCAATTGATAAC+AGG - chr1_1:49769432-49769451 None:intergenic 30.0%
TTGAAAGACAAGATGAATGT+TGG + chr1_1:49769440-49769459 Msa0026120:CDS 30.0%
AGATAATGATATTGGCAATG+TGG - chr1_1:49769490-49769509 None:intergenic 30.0%
CTTAAATCAAGCAATCTATC+AGG + chr1_1:49769550-49769569 Msa0026120:CDS 30.0%
! TTTTTATGATGCTGTGACTT+TGG + chr1_1:49769612-49769631 Msa0026120:CDS 30.0%
CTGCAAATTCATCATAGAAT+TGG - chr1_1:49769774-49769793 None:intergenic 30.0%
!! AAAAAAAAGTGTCACACACA+TGG - chr1_1:49770735-49770754 None:intergenic 30.0%
TGTTAGATGCAATATGTGAA+AGG + chr1_1:49770864-49770883 Msa0026120:CDS 30.0%
TGCTACAAACTTTAAATCCT+CGG - chr1_1:49771161-49771180 None:intergenic 30.0%
CTGATGTGAATAGAATCTAA+AGG - chr1_1:49771224-49771243 None:intergenic 30.0%
TTAGATTCTATTCACATCAG+TGG + chr1_1:49771224-49771243 Msa0026120:CDS 30.0%
! ATGTATTCTGGAAAACTAGT+AGG + chr1_1:49771427-49771446 Msa0026120:CDS 30.0%
TTGATATGCTTGGTACATTA+AGG + chr1_1:49771491-49771510 Msa0026120:CDS 30.0%
ATGAATAGTTGTTATGGAGA+AGG + chr1_1:49771566-49771585 Msa0026120:three_prime_UTR 30.0%
CTTGAGCTATACAACAAAAA+TGG + chr1_1:49767675-49767694 Msa0026120:exon 30.0%
ATAAACAAGCCATCATCAAA+TGG + chr1_1:49768083-49768102 Msa0026120:CDS 30.0%
AATTTATTCTAGGTCCTCTA+GGG - chr1_1:49768169-49768188 None:intergenic 30.0%
AAATTTATTCTAGGTCCTCT+AGG - chr1_1:49768170-49768189 None:intergenic 30.0%
GAGGACCTAGAATAAATTTA+TGG + chr1_1:49768171-49768190 Msa0026120:CDS 30.0%
ACTGGTAAGTAAAAGAAAAG+TGG - chr1_1:49768242-49768261 None:intergenic 30.0%
TGCATCAAACTACATGAAAA+AGG + chr1_1:49768442-49768461 Msa0026120:CDS 30.0%
TTATCAAATTGTTAGCCATG+TGG - chr1_1:49768808-49768827 None:intergenic 30.0%
TATAATGCTAGGTACTCATT+TGG + chr1_1:49768834-49768853 Msa0026120:intron 30.0%
ATAATGCTAGGTACTCATTT+GGG + chr1_1:49768835-49768854 Msa0026120:intron 30.0%
TTGGTTATCTTAGATGATAG+AGG - chr1_1:49768962-49768981 None:intergenic 30.0%
! TCTATCATCTAAGATAACCA+AGG + chr1_1:49768961-49768980 Msa0026120:CDS 30.0%
! AGTAATGATGGAAAAAGCTT+GGG + chr1_1:49768991-49769010 Msa0026120:CDS 30.0%
CTTATTTCCGTAAGTTCTAT+AGG + chr1_1:49769242-49769261 Msa0026120:intron 30.0%
AAGCTATCCTATAGAACTTA+CGG - chr1_1:49769252-49769271 None:intergenic 30.0%
TAAGAAATGAATCAGAAGCA+AGG - chr1_1:49769367-49769386 None:intergenic 30.0%
!!! AAAAGGTTTTAGGATCAACT+TGG + chr1_1:49769404-49769423 Msa0026120:intron 30.0%
! CTTGTCTTTCAATTGATAAC+AGG - chr1_1:49769432-49769451 None:intergenic 30.0%
TTGAAAGACAAGATGAATGT+TGG + chr1_1:49769440-49769459 Msa0026120:CDS 30.0%
AGATAATGATATTGGCAATG+TGG - chr1_1:49769490-49769509 None:intergenic 30.0%
CTTAAATCAAGCAATCTATC+AGG + chr1_1:49769550-49769569 Msa0026120:CDS 30.0%
! TTTTTATGATGCTGTGACTT+TGG + chr1_1:49769612-49769631 Msa0026120:CDS 30.0%
CTGCAAATTCATCATAGAAT+TGG - chr1_1:49769774-49769793 None:intergenic 30.0%
!! AAAAAAAAGTGTCACACACA+TGG - chr1_1:49770735-49770754 None:intergenic 30.0%
TGTTAGATGCAATATGTGAA+AGG + chr1_1:49770864-49770883 Msa0026120:CDS 30.0%
TGCTACAAACTTTAAATCCT+CGG - chr1_1:49771161-49771180 None:intergenic 30.0%
CTGATGTGAATAGAATCTAA+AGG - chr1_1:49771224-49771243 None:intergenic 30.0%
TTAGATTCTATTCACATCAG+TGG + chr1_1:49771224-49771243 Msa0026120:CDS 30.0%
! ATGTATTCTGGAAAACTAGT+AGG + chr1_1:49771427-49771446 Msa0026120:CDS 30.0%
TTGATATGCTTGGTACATTA+AGG + chr1_1:49771491-49771510 Msa0026120:CDS 30.0%
ATGAATAGTTGTTATGGAGA+AGG + chr1_1:49771566-49771585 Msa0026120:three_prime_UTR 30.0%
CTGTTATATCAAGAGTCGTA+AGG + chr1_1:49767701-49767720 Msa0026120:CDS 35.0%
ATGTATCAACTCATACCACT+AGG - chr1_1:49767850-49767869 None:intergenic 35.0%
TCGAATGAGTTCTATCTAGT+AGG + chr1_1:49767869-49767888 Msa0026120:intron 35.0%
AGTTCTATCTAGTAGGTCTA+GGG + chr1_1:49767876-49767895 Msa0026120:intron 35.0%
! TTCAGTGTTATTGTGAACTC+AGG + chr1_1:49767955-49767974 Msa0026120:intron 35.0%
AGAAGGTGAAGAAAGTCAAA+TGG + chr1_1:49768010-49768029 Msa0026120:CDS 35.0%
AAATGAGTGCATATGAGATG+AGG + chr1_1:49768033-49768052 Msa0026120:CDS 35.0%
!! TTTTCTGAAGATTATGACGC+AGG + chr1_1:49768125-49768144 Msa0026120:CDS 35.0%
!! ATTTTAGTATTCGACCCTAG+AGG + chr1_1:49768152-49768171 Msa0026120:CDS 35.0%
! CACTTTTCTTTCTTAGCAAC+TGG - chr1_1:49768260-49768279 None:intergenic 35.0%
GTAGTTTGATGCAATCTTTG+AGG - chr1_1:49768435-49768454 None:intergenic 35.0%
GAATATCAGGAATATACCTG+AGG - chr1_1:49768503-49768522 None:intergenic 35.0%
ATAAATCACTTCATCCTCCA+AGG + chr1_1:49768539-49768558 Msa0026120:intron 35.0%
TAAATCACTTCATCCTCCAA+GGG + chr1_1:49768540-49768559 Msa0026120:intron 35.0%
CAATGAATTGTTAGCCATGT+AGG - chr1_1:49768638-49768657 None:intergenic 35.0%
!! AATGTTCTGTGTTGGTTTGT+AGG + chr1_1:49768719-49768738 Msa0026120:intron 35.0%
!! ATGTTCTGTGTTGGTTTGTA+GGG + chr1_1:49768720-49768739 Msa0026120:intron 35.0%
AACGGCTAATACATTCTTTC+AGG - chr1_1:49768758-49768777 None:intergenic 35.0%
!! CCTCAATAAGTACTGGAAAA+TGG - chr1_1:49768924-49768943 None:intergenic 35.0%
! CCATTTTCCAGTACTTATTG+AGG + chr1_1:49768921-49768940 Msa0026120:CDS 35.0%
GATACAACCTCAATAAGTAC+TGG - chr1_1:49768931-49768950 None:intergenic 35.0%
! GAGTAATGATGGAAAAAGCT+TGG + chr1_1:49768990-49769009 Msa0026120:CDS 35.0%
CGTAATACTTGCGATCAAAA+TGG + chr1_1:49769086-49769105 Msa0026120:intron 35.0%
AGCATTTGTGATACTGTTTG+AGG + chr1_1:49769136-49769155 Msa0026120:intron 35.0%
GAAGCTTAAGTGATCCAAAT+AGG + chr1_1:49769518-49769537 Msa0026120:CDS 35.0%
TTAAGCCAAGCATTCCTATT+TGG - chr1_1:49769535-49769554 None:intergenic 35.0%
AACAGTCACTTCTTTCAGTT+TGG + chr1_1:49769586-49769605 Msa0026120:CDS 35.0%
GATTGTTGCAATTCTTGGAT+TGG + chr1_1:49769851-49769870 Msa0026120:CDS 35.0%
AGCAGGACATACATATATCA+CGG - chr1_1:49769954-49769973 None:intergenic 35.0%
GTATGTCCTGCTTAGATAAA+CGG + chr1_1:49769962-49769981 Msa0026120:intron 35.0%
AGTAAACCGTTTATCTAAGC+AGG - chr1_1:49769971-49769990 None:intergenic 35.0%
AATAATGTAACGGCGTGTTT+GGG - chr1_1:49770140-49770159 None:intergenic 35.0%
AAATAATGTAACGGCGTGTT+TGG - chr1_1:49770141-49770160 None:intergenic 35.0%
TAACTAGATTAAGGCAAAGG+TGG - chr1_1:49770386-49770405 None:intergenic 35.0%
GTCTAACTAGATTAAGGCAA+AGG - chr1_1:49770389-49770408 None:intergenic 35.0%
TATTTGCACGTAAAGTAGAG+CGG - chr1_1:49770538-49770557 None:intergenic 35.0%
CTTGACCATGAATGAATTTC+TGG - chr1_1:49770611-49770630 None:intergenic 35.0%
TAATTGGACACTAATTGCAC+AGG + chr1_1:49770811-49770830 Msa0026120:intron 35.0%
TCATCCATCTGATCAAATAG+TGG - chr1_1:49770839-49770858 None:intergenic 35.0%
TATTTGATCAGATGGATGAC+AGG + chr1_1:49770840-49770859 Msa0026120:CDS 35.0%
!! TCAGTTGTTTGCTATGTAAC+CGG - chr1_1:49771195-49771214 None:intergenic 35.0%
! CATGTTTTATACAAGCAGCT+TGG + chr1_1:49771260-49771279 Msa0026120:CDS 35.0%
TTATACAAGCAGCTTGGTTT+CGG + chr1_1:49771266-49771285 Msa0026120:CDS 35.0%
GAGAATGAAAGAGACAAATG+AGG + chr1_1:49771294-49771313 Msa0026120:CDS 35.0%
GAAAGAGACAAATGAGGTTA+AGG + chr1_1:49771300-49771319 Msa0026120:CDS 35.0%
GACAAATGAGGTTAAGGAAA+AGG + chr1_1:49771306-49771325 Msa0026120:CDS 35.0%
GAAAACTAGTAGGTAGTCTA+AGG + chr1_1:49771437-49771456 Msa0026120:CDS 35.0%
CTGTTATATCAAGAGTCGTA+AGG + chr1_1:49767701-49767720 Msa0026120:CDS 35.0%
ATGTATCAACTCATACCACT+AGG - chr1_1:49767850-49767869 None:intergenic 35.0%
TCGAATGAGTTCTATCTAGT+AGG + chr1_1:49767869-49767888 Msa0026120:intron 35.0%
AGTTCTATCTAGTAGGTCTA+GGG + chr1_1:49767876-49767895 Msa0026120:intron 35.0%
! TTCAGTGTTATTGTGAACTC+AGG + chr1_1:49767955-49767974 Msa0026120:intron 35.0%
AGAAGGTGAAGAAAGTCAAA+TGG + chr1_1:49768010-49768029 Msa0026120:CDS 35.0%
AAATGAGTGCATATGAGATG+AGG + chr1_1:49768033-49768052 Msa0026120:CDS 35.0%
!! TTTTCTGAAGATTATGACGC+AGG + chr1_1:49768125-49768144 Msa0026120:CDS 35.0%
!! ATTTTAGTATTCGACCCTAG+AGG + chr1_1:49768152-49768171 Msa0026120:CDS 35.0%
! CACTTTTCTTTCTTAGCAAC+TGG - chr1_1:49768260-49768279 None:intergenic 35.0%
GTAGTTTGATGCAATCTTTG+AGG - chr1_1:49768435-49768454 None:intergenic 35.0%
GAATATCAGGAATATACCTG+AGG - chr1_1:49768503-49768522 None:intergenic 35.0%
ATAAATCACTTCATCCTCCA+AGG + chr1_1:49768539-49768558 Msa0026120:intron 35.0%
TAAATCACTTCATCCTCCAA+GGG + chr1_1:49768540-49768559 Msa0026120:intron 35.0%
CAATGAATTGTTAGCCATGT+AGG - chr1_1:49768638-49768657 None:intergenic 35.0%
!! AATGTTCTGTGTTGGTTTGT+AGG + chr1_1:49768719-49768738 Msa0026120:intron 35.0%
!! ATGTTCTGTGTTGGTTTGTA+GGG + chr1_1:49768720-49768739 Msa0026120:intron 35.0%
AACGGCTAATACATTCTTTC+AGG - chr1_1:49768758-49768777 None:intergenic 35.0%
!! CCTCAATAAGTACTGGAAAA+TGG - chr1_1:49768924-49768943 None:intergenic 35.0%
! CCATTTTCCAGTACTTATTG+AGG + chr1_1:49768921-49768940 Msa0026120:CDS 35.0%
GATACAACCTCAATAAGTAC+TGG - chr1_1:49768931-49768950 None:intergenic 35.0%
! GAGTAATGATGGAAAAAGCT+TGG + chr1_1:49768990-49769009 Msa0026120:CDS 35.0%
CGTAATACTTGCGATCAAAA+TGG + chr1_1:49769086-49769105 Msa0026120:intron 35.0%
AGCATTTGTGATACTGTTTG+AGG + chr1_1:49769136-49769155 Msa0026120:intron 35.0%
GAAGCTTAAGTGATCCAAAT+AGG + chr1_1:49769518-49769537 Msa0026120:CDS 35.0%
TTAAGCCAAGCATTCCTATT+TGG - chr1_1:49769535-49769554 None:intergenic 35.0%
AACAGTCACTTCTTTCAGTT+TGG + chr1_1:49769586-49769605 Msa0026120:CDS 35.0%
GATTGTTGCAATTCTTGGAT+TGG + chr1_1:49769851-49769870 Msa0026120:CDS 35.0%
AGCAGGACATACATATATCA+CGG - chr1_1:49769954-49769973 None:intergenic 35.0%
GTATGTCCTGCTTAGATAAA+CGG + chr1_1:49769962-49769981 Msa0026120:intron 35.0%
AGTAAACCGTTTATCTAAGC+AGG - chr1_1:49769971-49769990 None:intergenic 35.0%
AATAATGTAACGGCGTGTTT+GGG - chr1_1:49770140-49770159 None:intergenic 35.0%
AAATAATGTAACGGCGTGTT+TGG - chr1_1:49770141-49770160 None:intergenic 35.0%
TAACTAGATTAAGGCAAAGG+TGG - chr1_1:49770386-49770405 None:intergenic 35.0%
GTCTAACTAGATTAAGGCAA+AGG - chr1_1:49770389-49770408 None:intergenic 35.0%
TATTTGCACGTAAAGTAGAG+CGG - chr1_1:49770538-49770557 None:intergenic 35.0%
CTTGACCATGAATGAATTTC+TGG - chr1_1:49770611-49770630 None:intergenic 35.0%
TAATTGGACACTAATTGCAC+AGG + chr1_1:49770811-49770830 Msa0026120:intron 35.0%
TCATCCATCTGATCAAATAG+TGG - chr1_1:49770839-49770858 None:intergenic 35.0%
TATTTGATCAGATGGATGAC+AGG + chr1_1:49770840-49770859 Msa0026120:CDS 35.0%
!! TCAGTTGTTTGCTATGTAAC+CGG - chr1_1:49771195-49771214 None:intergenic 35.0%
! CATGTTTTATACAAGCAGCT+TGG + chr1_1:49771260-49771279 Msa0026120:CDS 35.0%
TTATACAAGCAGCTTGGTTT+CGG + chr1_1:49771266-49771285 Msa0026120:CDS 35.0%
GAGAATGAAAGAGACAAATG+AGG + chr1_1:49771294-49771313 Msa0026120:CDS 35.0%
GAAAGAGACAAATGAGGTTA+AGG + chr1_1:49771300-49771319 Msa0026120:CDS 35.0%
GACAAATGAGGTTAAGGAAA+AGG + chr1_1:49771306-49771325 Msa0026120:CDS 35.0%
GAAAACTAGTAGGTAGTCTA+AGG + chr1_1:49771437-49771456 Msa0026120:CDS 35.0%
ATACCACTAGGCTACTTCTT+CGG - chr1_1:49767838-49767857 None:intergenic 40.0%
GAGTTCTATCTAGTAGGTCT+AGG + chr1_1:49767875-49767894 Msa0026120:intron 40.0%
ATGAGGAGTGAATACAAGCA+TGG + chr1_1:49768050-49768069 Msa0026120:CDS 40.0%
AAGCCATCATCAAATGGAAG+AGG + chr1_1:49768089-49768108 Msa0026120:CDS 40.0%
AGTCCTCTTCCATTTGATGA+TGG - chr1_1:49768095-49768114 None:intergenic 40.0%
TTATTGCGACATTCTTTGGC+TGG - chr1_1:49768613-49768632 None:intergenic 40.0%
GGCATTATTGCGACATTCTT+TGG - chr1_1:49768617-49768636 None:intergenic 40.0%
ATGTCGCAATAATGCCTACA+TGG + chr1_1:49768621-49768640 Msa0026120:intron 40.0%
TTGTACTCGCTCACACTTTA+CGG - chr1_1:49768689-49768708 None:intergenic 40.0%
GGTCAGAAATGATTGCATCA+AGG + chr1_1:49768879-49768898 Msa0026120:CDS 40.0%
! TCTAAGATAACCAAGGCAAG+TGG + chr1_1:49768968-49768987 Msa0026120:CDS 40.0%
GTGATCCAAATAGGAATGCT+TGG + chr1_1:49769527-49769546 Msa0026120:CDS 40.0%
TGATGAATTTGCAGCTCTTC+AGG + chr1_1:49769780-49769799 Msa0026120:intron 40.0%
CTGCAACATGTGTACTTGTT+AGG - chr1_1:49769815-49769834 None:intergenic 40.0%
GCTGTGATTGTTGCAATTCT+TGG + chr1_1:49769846-49769865 Msa0026120:CDS 40.0%
CAGCTTAAGCTATACTAGAG+AGG + chr1_1:49770061-49770080 Msa0026120:intron 40.0%
ACCTTCAATCGACCACTATA+CGG + chr1_1:49770178-49770197 Msa0026120:CDS 40.0%
GAAGGACAGATACAGAAAGA+TGG + chr1_1:49770220-49770239 Msa0026120:CDS 40.0%
! CATTTTCCTTCAGGTAACGA+GGG - chr1_1:49770263-49770282 None:intergenic 40.0%
! ACATTTTCCTTCAGGTAACG+AGG - chr1_1:49770264-49770283 None:intergenic 40.0%
ACGCCATGACCAATTTAGAT+GGG + chr1_1:49770287-49770306 Msa0026120:CDS 40.0%
CTACCCATCTAAATTGGTCA+TGG - chr1_1:49770293-49770312 None:intergenic 40.0%
GAGTAGCTACCCATCTAAAT+TGG - chr1_1:49770299-49770318 None:intergenic 40.0%
ATGTCACGTCTTAGATCAAC+AGG - chr1_1:49770357-49770376 None:intergenic 40.0%
TTTAGATTAGACGGATCTGC+TGG + chr1_1:49770502-49770521 Msa0026120:intron 40.0%
TTAGATTAGACGGATCTGCT+GGG + chr1_1:49770503-49770522 Msa0026120:intron 40.0%
! GACCAATGCGATCTCAATTT+TGG + chr1_1:49770634-49770653 Msa0026120:intron 40.0%
GACCAAAATTGAGATCGCAT+TGG - chr1_1:49770639-49770658 None:intergenic 40.0%
GGTACCACTATTTGATCAGA+TGG + chr1_1:49770832-49770851 Msa0026120:intron 40.0%
TTAGATTCTTGCACGACCAA+CGG + chr1_1:49770974-49770993 Msa0026120:CDS 40.0%
AAATGCTTCGACTTCTGTGA+TGG - chr1_1:49771128-49771147 None:intergenic 40.0%
GATTCTATTCACATCAGTGG+AGG + chr1_1:49771227-49771246 Msa0026120:CDS 40.0%
! AGAGGAAGAAGCATGAGATA+TGG + chr1_1:49771460-49771479 Msa0026120:CDS 40.0%
! TCAATTTTAGGCTAGGGTCA+AGG + chr1_1:49771706-49771725 Msa0026120:three_prime_UTR 40.0%
ATACCACTAGGCTACTTCTT+CGG - chr1_1:49767838-49767857 None:intergenic 40.0%
GAGTTCTATCTAGTAGGTCT+AGG + chr1_1:49767875-49767894 Msa0026120:intron 40.0%
ATGAGGAGTGAATACAAGCA+TGG + chr1_1:49768050-49768069 Msa0026120:CDS 40.0%
AAGCCATCATCAAATGGAAG+AGG + chr1_1:49768089-49768108 Msa0026120:CDS 40.0%
AGTCCTCTTCCATTTGATGA+TGG - chr1_1:49768095-49768114 None:intergenic 40.0%
TTATTGCGACATTCTTTGGC+TGG - chr1_1:49768613-49768632 None:intergenic 40.0%
GGCATTATTGCGACATTCTT+TGG - chr1_1:49768617-49768636 None:intergenic 40.0%
ATGTCGCAATAATGCCTACA+TGG + chr1_1:49768621-49768640 Msa0026120:intron 40.0%
TTGTACTCGCTCACACTTTA+CGG - chr1_1:49768689-49768708 None:intergenic 40.0%
GGTCAGAAATGATTGCATCA+AGG + chr1_1:49768879-49768898 Msa0026120:CDS 40.0%
! TCTAAGATAACCAAGGCAAG+TGG + chr1_1:49768968-49768987 Msa0026120:CDS 40.0%
GTGATCCAAATAGGAATGCT+TGG + chr1_1:49769527-49769546 Msa0026120:CDS 40.0%
TGATGAATTTGCAGCTCTTC+AGG + chr1_1:49769780-49769799 Msa0026120:intron 40.0%
CTGCAACATGTGTACTTGTT+AGG - chr1_1:49769815-49769834 None:intergenic 40.0%
GCTGTGATTGTTGCAATTCT+TGG + chr1_1:49769846-49769865 Msa0026120:CDS 40.0%
CAGCTTAAGCTATACTAGAG+AGG + chr1_1:49770061-49770080 Msa0026120:intron 40.0%
ACCTTCAATCGACCACTATA+CGG + chr1_1:49770178-49770197 Msa0026120:CDS 40.0%
GAAGGACAGATACAGAAAGA+TGG + chr1_1:49770220-49770239 Msa0026120:CDS 40.0%
! CATTTTCCTTCAGGTAACGA+GGG - chr1_1:49770263-49770282 None:intergenic 40.0%
! ACATTTTCCTTCAGGTAACG+AGG - chr1_1:49770264-49770283 None:intergenic 40.0%
ACGCCATGACCAATTTAGAT+GGG + chr1_1:49770287-49770306 Msa0026120:CDS 40.0%
CTACCCATCTAAATTGGTCA+TGG - chr1_1:49770293-49770312 None:intergenic 40.0%
GAGTAGCTACCCATCTAAAT+TGG - chr1_1:49770299-49770318 None:intergenic 40.0%
ATGTCACGTCTTAGATCAAC+AGG - chr1_1:49770357-49770376 None:intergenic 40.0%
TTTAGATTAGACGGATCTGC+TGG + chr1_1:49770502-49770521 Msa0026120:intron 40.0%
TTAGATTAGACGGATCTGCT+GGG + chr1_1:49770503-49770522 Msa0026120:intron 40.0%
! GACCAATGCGATCTCAATTT+TGG + chr1_1:49770634-49770653 Msa0026120:intron 40.0%
GACCAAAATTGAGATCGCAT+TGG - chr1_1:49770639-49770658 None:intergenic 40.0%
GGTACCACTATTTGATCAGA+TGG + chr1_1:49770832-49770851 Msa0026120:intron 40.0%
TTAGATTCTTGCACGACCAA+CGG + chr1_1:49770974-49770993 Msa0026120:CDS 40.0%
AAATGCTTCGACTTCTGTGA+TGG - chr1_1:49771128-49771147 None:intergenic 40.0%
GATTCTATTCACATCAGTGG+AGG + chr1_1:49771227-49771246 Msa0026120:CDS 40.0%
! AGAGGAAGAAGCATGAGATA+TGG + chr1_1:49771460-49771479 Msa0026120:CDS 40.0%
! TCAATTTTAGGCTAGGGTCA+AGG + chr1_1:49771706-49771725 Msa0026120:three_prime_UTR 40.0%
TACCACTAGGCTACTTCTTC+GGG - chr1_1:49767837-49767856 None:intergenic 45.0%
CAGGAATATACCTGAGGAAG+TGG - chr1_1:49768497-49768516 None:intergenic 45.0%
TGTACTCGCTCACACTTTAC+GGG - chr1_1:49768688-49768707 None:intergenic 45.0%
! AGTACTGGAAAATGGACACC+AGG - chr1_1:49768916-49768935 None:intergenic 45.0%
CATCATTACTCCACTTGCCT+TGG - chr1_1:49768981-49769000 None:intergenic 45.0%
CAAGGCAAGTGGAGTAATGA+TGG + chr1_1:49768979-49768998 Msa0026120:CDS 45.0%
! ATGATGGAAAAAGCTTGGGC+TGG + chr1_1:49768995-49769014 Msa0026120:CDS 45.0%
ACTTATGTGAGCGTACGTAC+TGG + chr1_1:49769109-49769128 Msa0026120:intron 45.0%
ATTGTCTTTGGTGGGGATTG+AGG + chr1_1:49769671-49769690 Msa0026120:CDS 45.0%
!! GTGCTTTTTGCACTGCTCAT+AGG + chr1_1:49769873-49769892 Msa0026120:CDS 45.0%
TGGAAGAGTGGCGAATAAGA+AGG + chr1_1:49770202-49770221 Msa0026120:CDS 45.0%
CAGAAAGATGGATGCATCAC+CGG + chr1_1:49770232-49770251 Msa0026120:CDS 45.0%
GACGCCATGACCAATTTAGA+TGG + chr1_1:49770286-49770305 Msa0026120:CDS 45.0%
TTTAGATGGGTAGCTACTCG+TGG + chr1_1:49770300-49770319 Msa0026120:CDS 45.0%
AAACCAACTCTATGCACTCC+AGG + chr1_1:49770890-49770909 Msa0026120:CDS 45.0%
!! TGAAGAGCATTTCGTCGACA+GGG - chr1_1:49770940-49770959 None:intergenic 45.0%
!! ATGAAGAGCATTTCGTCGAC+AGG - chr1_1:49770941-49770960 None:intergenic 45.0%
GAAATGCTCTTCATCGTTCG+AGG + chr1_1:49770947-49770966 Msa0026120:CDS 45.0%
AAAACCAGTTCTACCACCGT+TGG - chr1_1:49770993-49771012 None:intergenic 45.0%
AACACCTGCAGAATAAGCTC+AGG + chr1_1:49771016-49771035 Msa0026120:CDS 45.0%
! CGGTGAAGAGCTTTTACCAT+GGG + chr1_1:49771048-49771067 Msa0026120:CDS 45.0%
ATGAAGGAAACACAGCAGTC+GGG - chr1_1:49771087-49771106 None:intergenic 45.0%
GATGAAGGAAACACAGCAGT+CGG - chr1_1:49771088-49771107 None:intergenic 45.0%
!! GTTGTTTGCTATGTAACCGG+CGG - chr1_1:49771192-49771211 None:intergenic 45.0%
ATTCACATCAGTGGAGGACA+TGG + chr1_1:49771233-49771252 Msa0026120:CDS 45.0%
TTCACATCAGTGGAGGACAT+GGG + chr1_1:49771234-49771253 Msa0026120:CDS 45.0%
ATATTTCTCTGCACCTCTGC+AGG + chr1_1:49771381-49771400 Msa0026120:CDS 45.0%
CTAGTAGGTAGTCTAAGGAG+AGG + chr1_1:49771442-49771461 Msa0026120:CDS 45.0%
! GGTGCTGAACTTGATATGCT+TGG + chr1_1:49771481-49771500 Msa0026120:CDS 45.0%
! TTTTAGGCTAGGGTCAAGGA+TGG + chr1_1:49771710-49771729 Msa0026120:three_prime_UTR 45.0%
CTAGGGTCAAGGATGGAATT+AGG + chr1_1:49771717-49771736 Msa0026120:three_prime_UTR 45.0%
TACCACTAGGCTACTTCTTC+GGG - chr1_1:49767837-49767856 None:intergenic 45.0%
CAGGAATATACCTGAGGAAG+TGG - chr1_1:49768497-49768516 None:intergenic 45.0%
TGTACTCGCTCACACTTTAC+GGG - chr1_1:49768688-49768707 None:intergenic 45.0%
! AGTACTGGAAAATGGACACC+AGG - chr1_1:49768916-49768935 None:intergenic 45.0%
CATCATTACTCCACTTGCCT+TGG - chr1_1:49768981-49769000 None:intergenic 45.0%
CAAGGCAAGTGGAGTAATGA+TGG + chr1_1:49768979-49768998 Msa0026120:CDS 45.0%
! ATGATGGAAAAAGCTTGGGC+TGG + chr1_1:49768995-49769014 Msa0026120:CDS 45.0%
ACTTATGTGAGCGTACGTAC+TGG + chr1_1:49769109-49769128 Msa0026120:intron 45.0%
ATTGTCTTTGGTGGGGATTG+AGG + chr1_1:49769671-49769690 Msa0026120:CDS 45.0%
!! GTGCTTTTTGCACTGCTCAT+AGG + chr1_1:49769873-49769892 Msa0026120:CDS 45.0%
TGGAAGAGTGGCGAATAAGA+AGG + chr1_1:49770202-49770221 Msa0026120:CDS 45.0%
CAGAAAGATGGATGCATCAC+CGG + chr1_1:49770232-49770251 Msa0026120:CDS 45.0%
GACGCCATGACCAATTTAGA+TGG + chr1_1:49770286-49770305 Msa0026120:CDS 45.0%
TTTAGATGGGTAGCTACTCG+TGG + chr1_1:49770300-49770319 Msa0026120:CDS 45.0%
AAACCAACTCTATGCACTCC+AGG + chr1_1:49770890-49770909 Msa0026120:CDS 45.0%
!! TGAAGAGCATTTCGTCGACA+GGG - chr1_1:49770940-49770959 None:intergenic 45.0%
!! ATGAAGAGCATTTCGTCGAC+AGG - chr1_1:49770941-49770960 None:intergenic 45.0%
GAAATGCTCTTCATCGTTCG+AGG + chr1_1:49770947-49770966 Msa0026120:CDS 45.0%
AAAACCAGTTCTACCACCGT+TGG - chr1_1:49770993-49771012 None:intergenic 45.0%
AACACCTGCAGAATAAGCTC+AGG + chr1_1:49771016-49771035 Msa0026120:CDS 45.0%
! CGGTGAAGAGCTTTTACCAT+GGG + chr1_1:49771048-49771067 Msa0026120:CDS 45.0%
ATGAAGGAAACACAGCAGTC+GGG - chr1_1:49771087-49771106 None:intergenic 45.0%
GATGAAGGAAACACAGCAGT+CGG - chr1_1:49771088-49771107 None:intergenic 45.0%
!! GTTGTTTGCTATGTAACCGG+CGG - chr1_1:49771192-49771211 None:intergenic 45.0%
ATTCACATCAGTGGAGGACA+TGG + chr1_1:49771233-49771252 Msa0026120:CDS 45.0%
TTCACATCAGTGGAGGACAT+GGG + chr1_1:49771234-49771253 Msa0026120:CDS 45.0%
ATATTTCTCTGCACCTCTGC+AGG + chr1_1:49771381-49771400 Msa0026120:CDS 45.0%
CTAGTAGGTAGTCTAAGGAG+AGG + chr1_1:49771442-49771461 Msa0026120:CDS 45.0%
! GGTGCTGAACTTGATATGCT+TGG + chr1_1:49771481-49771500 Msa0026120:CDS 45.0%
! TTTTAGGCTAGGGTCAAGGA+TGG + chr1_1:49771710-49771729 Msa0026120:three_prime_UTR 45.0%
CTAGGGTCAAGGATGGAATT+AGG + chr1_1:49771717-49771736 Msa0026120:three_prime_UTR 45.0%
ATCCCGAAGAAGTAGCCTAG+TGG + chr1_1:49767832-49767851 Msa0026120:intron 50.0%
GCTCCTTCATCTCGTGTTTC+TGG + chr1_1:49768386-49768405 Msa0026120:CDS 50.0%
CGACCAGAAACACGAGATGA+AGG - chr1_1:49768392-49768411 None:intergenic 50.0%
!! TCATCTCGTGTTTCTGGTCG+AGG + chr1_1:49768392-49768411 Msa0026120:CDS 50.0%
ACATGTGATGAAGCCCTTGG+AGG - chr1_1:49768556-49768575 None:intergenic 50.0%
TCCAAGGGCTTCATCACATG+TGG + chr1_1:49768555-49768574 Msa0026120:intron 50.0%
ACCACATGTGATGAAGCCCT+TGG - chr1_1:49768559-49768578 None:intergenic 50.0%
ATCAAGGCATGTAGTTCGCC+TGG + chr1_1:49768895-49768914 Msa0026120:CDS 50.0%
GGTGGGGATTGAGGAATCTA+AGG + chr1_1:49769680-49769699 Msa0026120:CDS 50.0%
GCCGTATAGTGGTCGATTGA+AGG - chr1_1:49770182-49770201 None:intergenic 50.0%
TCAATCGACCACTATACGGC+TGG + chr1_1:49770182-49770201 Msa0026120:CDS 50.0%
!! GGCGTCGAACATTTTCCTTC+AGG - chr1_1:49770272-49770291 None:intergenic 50.0%
GTTCCTGGAGTGCATAGAGT+TGG - chr1_1:49770896-49770915 None:intergenic 50.0%
TCGCGAACTATGCAAGTTCC+TGG - chr1_1:49770911-49770930 None:intergenic 50.0%
GGAACTTGCATAGTTCGCGA+AGG + chr1_1:49770911-49770930 Msa0026120:CDS 50.0%
ATAAGCTCAGGCGACTTCTG+CGG + chr1_1:49771028-49771047 Msa0026120:CDS 50.0%
! GCGGTGAAGAGCTTTTACCA+TGG + chr1_1:49771047-49771066 Msa0026120:CDS 50.0%
!! CTCACTGTGCGAGTTGATGA+AGG - chr1_1:49771103-49771122 None:intergenic 50.0%
AGCATTTGCACTCATTGCCG+AGG + chr1_1:49771141-49771160 Msa0026120:CDS 50.0%
TTGTAGCAGCACAATTCCGC+CGG + chr1_1:49771173-49771192 Msa0026120:CDS 50.0%
ATCCCGAAGAAGTAGCCTAG+TGG + chr1_1:49767832-49767851 Msa0026120:intron 50.0%
GCTCCTTCATCTCGTGTTTC+TGG + chr1_1:49768386-49768405 Msa0026120:CDS 50.0%
CGACCAGAAACACGAGATGA+AGG - chr1_1:49768392-49768411 None:intergenic 50.0%
!! TCATCTCGTGTTTCTGGTCG+AGG + chr1_1:49768392-49768411 Msa0026120:CDS 50.0%
ACATGTGATGAAGCCCTTGG+AGG - chr1_1:49768556-49768575 None:intergenic 50.0%
TCCAAGGGCTTCATCACATG+TGG + chr1_1:49768555-49768574 Msa0026120:intron 50.0%
ACCACATGTGATGAAGCCCT+TGG - chr1_1:49768559-49768578 None:intergenic 50.0%
ATCAAGGCATGTAGTTCGCC+TGG + chr1_1:49768895-49768914 Msa0026120:CDS 50.0%
GGTGGGGATTGAGGAATCTA+AGG + chr1_1:49769680-49769699 Msa0026120:CDS 50.0%
GCCGTATAGTGGTCGATTGA+AGG - chr1_1:49770182-49770201 None:intergenic 50.0%
TCAATCGACCACTATACGGC+TGG + chr1_1:49770182-49770201 Msa0026120:CDS 50.0%
!! GGCGTCGAACATTTTCCTTC+AGG - chr1_1:49770272-49770291 None:intergenic 50.0%
GTTCCTGGAGTGCATAGAGT+TGG - chr1_1:49770896-49770915 None:intergenic 50.0%
TCGCGAACTATGCAAGTTCC+TGG - chr1_1:49770911-49770930 None:intergenic 50.0%
GGAACTTGCATAGTTCGCGA+AGG + chr1_1:49770911-49770930 Msa0026120:CDS 50.0%
ATAAGCTCAGGCGACTTCTG+CGG + chr1_1:49771028-49771047 Msa0026120:CDS 50.0%
! GCGGTGAAGAGCTTTTACCA+TGG + chr1_1:49771047-49771066 Msa0026120:CDS 50.0%
!! CTCACTGTGCGAGTTGATGA+AGG - chr1_1:49771103-49771122 None:intergenic 50.0%
AGCATTTGCACTCATTGCCG+AGG + chr1_1:49771141-49771160 Msa0026120:CDS 50.0%
TTGTAGCAGCACAATTCCGC+CGG + chr1_1:49771173-49771192 Msa0026120:CDS 50.0%
TGCAGCACTACCACTTCCTC+AGG + chr1_1:49768484-49768503 Msa0026120:CDS 55.0%
CCACTCTTCCAGCCGTATAG+TGG - chr1_1:49770193-49770212 None:intergenic 55.0%
CCACTATACGGCTGGAAGAG+TGG + chr1_1:49770190-49770209 Msa0026120:CDS 55.0%
AGCTACTCGTGGAGTTGACG+AGG + chr1_1:49770311-49770330 Msa0026120:CDS 55.0%
GATTCTTGCACGACCAACGG+TGG + chr1_1:49770977-49770996 Msa0026120:CDS 55.0%
ACGACCAACGGTGGTAGAAC+TGG + chr1_1:49770986-49771005 Msa0026120:CDS 55.0%
GTCGCCTGAGCTTATTCTGC+AGG - chr1_1:49771023-49771042 None:intergenic 55.0%
! GATCCTTTTGGCACCTGCAG+AGG - chr1_1:49771397-49771416 None:intergenic 55.0%
TGCAGCACTACCACTTCCTC+AGG + chr1_1:49768484-49768503 Msa0026120:CDS 55.0%
CCACTCTTCCAGCCGTATAG+TGG - chr1_1:49770193-49770212 None:intergenic 55.0%
CCACTATACGGCTGGAAGAG+TGG + chr1_1:49770190-49770209 Msa0026120:CDS 55.0%
AGCTACTCGTGGAGTTGACG+AGG + chr1_1:49770311-49770330 Msa0026120:CDS 55.0%
GATTCTTGCACGACCAACGG+TGG + chr1_1:49770977-49770996 Msa0026120:CDS 55.0%
ACGACCAACGGTGGTAGAAC+TGG + chr1_1:49770986-49771005 Msa0026120:CDS 55.0%
GTCGCCTGAGCTTATTCTGC+AGG - chr1_1:49771023-49771042 None:intergenic 55.0%
! GATCCTTTTGGCACCTGCAG+AGG - chr1_1:49771397-49771416 None:intergenic 55.0%
TCAGGTAACGAGGGAGCTGC+CGG - chr1_1:49770254-49770273 None:intergenic 60.0%
GCAGCTCCCTCGTTACCTGA+AGG + chr1_1:49770254-49770273 Msa0026120:CDS 60.0%
GAAACACAGCAGTCGGGCGA+GGG - chr1_1:49771081-49771100 None:intergenic 60.0%
GCACCTCTGCAGGTGCCAAA+AGG + chr1_1:49771391-49771410 Msa0026120:CDS 60.0%
TCAGGTAACGAGGGAGCTGC+CGG - chr1_1:49770254-49770273 None:intergenic 60.0%
GCAGCTCCCTCGTTACCTGA+AGG + chr1_1:49770254-49770273 Msa0026120:CDS 60.0%
GAAACACAGCAGTCGGGCGA+GGG - chr1_1:49771081-49771100 None:intergenic 60.0%
GCACCTCTGCAGGTGCCAAA+AGG + chr1_1:49771391-49771410 Msa0026120:CDS 60.0%
AGCAGTCGGGCGAGGGTCTA+AGG - chr1_1:49771074-49771093 None:intergenic 65.0%
GGAAACACAGCAGTCGGGCG+AGG - chr1_1:49771082-49771101 None:intergenic 65.0%
AGCAGTCGGGCGAGGGTCTA+AGG - chr1_1:49771074-49771093 None:intergenic 65.0%
GGAAACACAGCAGTCGGGCG+AGG - chr1_1:49771082-49771101 None:intergenic 65.0%
! GGGCGAGGGTCTAAGGCCCA+TGG - chr1_1:49771067-49771086 None:intergenic 70.0%
! GGGCGAGGGTCTAAGGCCCA+TGG - chr1_1:49771067-49771086 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49767664 49771768 49767664 ID=Msa0026120;Name=Msa0026120
chr1_1 mRNA 49767664 49771768 49767664 ID=Msa0026120-mRNA-1;Parent=Msa0026120;Name=Msa0026120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|1|1|7|216|710
chr1_1 exon 49767664 49767722 49767664 ID=Msa0026120-mRNA-1:exon:14355;Parent=Msa0026120-mRNA-1
chr1_1 exon 49767977 49768505 49767977 ID=Msa0026120-mRNA-1:exon:14356;Parent=Msa0026120-mRNA-1
chr1_1 exon 49768845 49769057 49768845 ID=Msa0026120-mRNA-1:exon:14357;Parent=Msa0026120-mRNA-1
chr1_1 exon 49769409 49769701 49769409 ID=Msa0026120-mRNA-1:exon:14358;Parent=Msa0026120-mRNA-1
chr1_1 exon 49769794 49769905 49769794 ID=Msa0026120-mRNA-1:exon:14359;Parent=Msa0026120-mRNA-1
chr1_1 exon 49770174 49770410 49770174 ID=Msa0026120-mRNA-1:exon:14360;Parent=Msa0026120-mRNA-1
chr1_1 exon 49770833 49771768 49770833 ID=Msa0026120-mRNA-1:exon:14361;Parent=Msa0026120-mRNA-1
chr1_1 five_prime_UTR 49767664 49767693 49767664 ID=Msa0026120-mRNA-1:five_prime_utr;Parent=Msa0026120-mRNA-1
chr1_1 CDS 49767694 49767722 49767694 ID=Msa0026120-mRNA-1:cds;Parent=Msa0026120-mRNA-1
chr1_1 CDS 49767977 49768505 49767977 ID=Msa0026120-mRNA-1:cds;Parent=Msa0026120-mRNA-1
chr1_1 CDS 49768845 49769057 49768845 ID=Msa0026120-mRNA-1:cds;Parent=Msa0026120-mRNA-1
chr1_1 CDS 49769409 49769701 49769409 ID=Msa0026120-mRNA-1:cds;Parent=Msa0026120-mRNA-1
chr1_1 CDS 49769794 49769905 49769794 ID=Msa0026120-mRNA-1:cds;Parent=Msa0026120-mRNA-1
chr1_1 CDS 49770174 49770410 49770174 ID=Msa0026120-mRNA-1:cds;Parent=Msa0026120-mRNA-1
chr1_1 CDS 49770833 49771552 49770833 ID=Msa0026120-mRNA-1:cds;Parent=Msa0026120-mRNA-1
chr1_1 three_prime_UTR 49771553 49771768 49771553 ID=Msa0026120-mRNA-1:three_prime_utr;Parent=Msa0026120-mRNA-1
Gene Sequence

>Msa0026120

ATGGCTTCTGTTATATCAAGAGTCGTAAGGTTTCATGATGATCTTGAAAAAGAGAAATTACAAGAAGGTGAAGAAAGTCAAATGGAAATGAGTGCATATGAGATGAGGAGTGAATACAAGCATGGAAAAGATGCAATAAACAAGCCATCATCAAATGGAAGAGGACTTTCAAGAGTTTTTTCTGAAGATTATGACGCAGGAGAGATTTTAGTATTCGACCCTAGAGGACCTAGAATAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCACTTTTCTTTTACTTACCAGTTGCTAAGAAAGAAAAGTGTATTGATATGTCAATTGGTCTTGAAGTTTCACTTACTATAATTAGAACATTTGTTGATGCATTTTACATTATTCATATCTATATTAGGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTCGAGGAGAACTCATTATTGATTCCTCAAAGATTGCATCAAACTACATGAAAAAGGAATTTTGGTCTGATCTTGTTGCAGCACTACCACTTCCTCAGGTACTCATTTGGGCTGTAATTCCAAATATAAAAGGGTCAGAAATGATTGCATCAAGGCATGTAGTTCGCCTGGTGTCCATTTTCCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTAAGATAACCAAGGCAAGTGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATTATTTAACACTCTATATGCTTGCAAGTCATGTTTTAGGATCAACTTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCATGTACACTTCAATATCCACATTGCCAATATCATTATCTTGATTGTCGAAGCTTAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGTCTATGTGATCAGAACAGTCACTTCTTTCAGTTTGGAATTTTTTATGATGCTGTGACTTTGGAAATAACTAGCTCAAACTTCTTAACCAAGTATTATTATTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTTCAGGAGAGAATCTCCTAACAAGTACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTCATAGGAAATATGCAAACGTACCTTCAATCGACCACTATACGGCTGGAAGAGTGGCGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACCGGCAGCTCCCTCGTTACCTGAAGGAAAATGTTCGACGCCATGACCAATTTAGATGGGTAGCTACTCGTGGAGTTGACGAGGAAGCAATTCTTAGAGATCTTCCTGTTGATCTAAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAGATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTAAAACCAACTCTATGCACTCCAGGAACTTGCATAGTTCGCGAAGGCGACCCTGTCGACGAAATGCTCTTCATCGTTCGAGGACGTTTAGATTCTTGCACGACCAACGGTGGTAGAACTGGTTTTTTCAACACCTGCAGAATAAGCTCAGGCGACTTCTGCGGTGAAGAGCTTTTACCATGGGCCTTAGACCCTCGCCCGACTGCTGTGTTTCCTTCATCAACTCGCACAGTGAGAGCCATCACAGAAGTCGAAGCATTTGCACTCATTGCCGAGGATTTAAAGTTTGTAGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCATGTTTTATACAAGCAGCTTGGTTTCGGTATAAGAGAATGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGTCAAATGTGAAATATTATGGAAATGATGATTCTCAATATTTCTCTGCACCTCTGCAGGTGCCAAAAGGATCAAGTTATTCAATGTATTCTGGAAAACTAGTAGGTAGTCTAAGGAGAGGAAGAAGCATGAGATATGGTGCTGAACTTGATATGCTTGGTACATTAAGGAAGCCTATTGAACCAGATTTTAATGATGATGATGATTAA
Protein sequence

>Msa0026120

MASVISRVVRFHDDLEKEKLQEGEESQMEMSAYEMRSEYKHGKDAINKPSSNGRGLSRVFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTAYIAPSSRVSGRGELIIDSSKIASNYMKKEFWSDLVAALPLPQVLIWAVIPNIKGSEMIASRHVVRLVSIFQYLLRLYLIYPLSSKITKASGVMMEKAWAGAAYYLTLYMLASHVLGSTWYLLSIERQDECWKKACTLQYPHCQYHYLDCRSLSDPNRNAWLKSSNLSGLCDQNSHFFQFGIFYDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRISSGDFCGEELLPWALDPRPTAVFPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGAELDMLGTLRKPIEPDFNDDDD*