AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464630 MtrunA17_Chr3g0115811 96.364 110 4 0 1 110 1 110 2.09e-75 218
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464630 AT1G34640.1 54.545 110 49 1 1 110 1 109 4.94e-34 114

Find 45 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTATTGTTGGAATTTC+TGG 0.095978 3_3:+64709418 Msa0464630:CDS
TTGATTCAATTTGTTTAATT+TGG 0.106463 3_3:+64710843 Msa0464630:three_prime_UTR
TTTAACTTAATTGTTGATTT+TGG 0.162503 3_3:-64709227 None:intergenic
ACTTTGATGGCATATGAAAA+TGG 0.232248 3_3:-64710954 None:intergenic
TTTCCTAAAGTCTATAATAT+TGG 0.275231 3_3:+64709259 Msa0464630:five_prime_UTR
ATTGTTTATACCGTGGTATA+TGG 0.321881 3_3:+64710717 Msa0464630:CDS
TTTATCAGGAAGAATCAAAT+TGG 0.325828 3_3:-64711028 None:intergenic
GAAAGTATAAAGAAAGAATA+TGG 0.333215 3_3:-64710808 None:intergenic
CAACTTGTGCTAGACTTTGA+TGG 0.337336 3_3:-64710967 None:intergenic
CAACCAATATTATAGACTTT+AGG 0.344691 3_3:-64709262 None:intergenic
GATCTTTCCTCAACAGTAAC+AGG 0.350655 3_3:-64709496 None:intergenic
CTTTGATGGCATATGAAAAT+GGG 0.380874 3_3:-64710953 None:intergenic
TTGGCTAGCAGCAGTTATAT+TGG 0.391625 3_3:+64709345 Msa0464630:CDS
AAATGGTGGAAGTATGTATC+TGG 0.404668 3_3:+64710753 Msa0464630:CDS
ACCTATGTGTTGGGTATTGT+TGG 0.449040 3_3:+64709409 Msa0464630:CDS
AGTGGCCATGCTTACAATTA+CGG 0.449497 3_3:-64709192 None:intergenic
TCCTCAACAGTAACAGGATA+AGG 0.457912 3_3:-64709490 None:intergenic
ATGTTCGTTACCTATGTGTT+GGG 0.458889 3_3:+64709400 Msa0464630:CDS
CTCTAAGAACCTCTATACTT+TGG 0.483285 3_3:+64709326 Msa0464630:CDS
CGGTTGAAATAATCCCAATC+AGG 0.486481 3_3:-64709451 None:intergenic
GCAGCAGTTATATTGGTAGT+TGG 0.490292 3_3:+64709352 Msa0464630:CDS
TCAGCAGCTTCTCTTTCTCA+TGG 0.490405 3_3:+64709517 Msa0464630:CDS
ATGGATATGCTATTTACAAA+TGG 0.496079 3_3:+64710736 Msa0464630:CDS
GCCTTATCCTGTTACTGTTG+AGG 0.496290 3_3:+64709489 Msa0464630:CDS
TGCTGCTAGCCAAAGTATAG+AGG 0.504355 3_3:-64709335 None:intergenic
CTAAAGTCTATAATATTGGT+TGG 0.508456 3_3:+64709263 Msa0464630:five_prime_UTR
GATGTTCGTTACCTATGTGT+TGG 0.512795 3_3:+64709399 Msa0464630:CDS
TAGAGCTGCATCATTTGCCA+TGG 0.517008 3_3:-64709308 None:intergenic
GTTTACATGTTCTCCTCTGA+GGG 0.520969 3_3:+64710692 Msa0464630:CDS
GGTTTACATGTTCTCCTCTG+AGG 0.536710 3_3:+64710691 Msa0464630:intron
CATGCTTACAATTACGGTAG+TGG 0.548361 3_3:-64709186 None:intergenic
CACTACCGTAATTGTAAGCA+TGG 0.564352 3_3:+64709187 Msa0464630:five_prime_UTR
GATATGCTATTTACAAATGG+TGG 0.584585 3_3:+64710739 Msa0464630:CDS
TTACAATTACGGTAGTGGTA+AGG 0.588978 3_3:-64709181 None:intergenic
CTTGTCGATAATCACTGTTG+TGG 0.600841 3_3:-64710879 None:intergenic
TCAACCGTGATATTTCTCGT+TGG 0.602906 3_3:+64709467 Msa0464630:CDS
CACAACAGTGATTATCGACA+AGG 0.616326 3_3:+64710880 Msa0464630:three_prime_UTR
TGTGTGAGTGTTGTAAACTC+TGG 0.617860 3_3:+64711003 Msa0464630:three_prime_UTR
GAGGGTGATTGTTTATACCG+TGG 0.633740 3_3:+64710710 Msa0464630:CDS
TTTGATGGCATATGAAAATG+GGG 0.641442 3_3:-64710952 None:intergenic
TCCAACAATACCCAACACAT+AGG 0.663389 3_3:-64709410 None:intergenic
TATCAATCTCATCACAACCA+TGG 0.667626 3_3:+64709291 Msa0464630:exon
AAGGCCAACGAGAAATATCA+CGG 0.673257 3_3:-64709471 None:intergenic
GTATAAACAATCACCCTCAG+AGG 0.703555 3_3:-64710705 None:intergenic
AATAGCATATCCATATACCA+CGG 0.722953 3_3:-64710727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATATAAATGAATTAA+GGG - chr3_3:64709564-64709583 None:intergenic 10.0%
!! TAAAGAATATAAATGAATTA+AGG - chr3_3:64709565-64709584 None:intergenic 10.0%
!!! AAAATAATTTGTTAAAATGT+TGG + chr3_3:64710006-64710025 Msa0464630:intron 10.0%
!! AAAGAATATAAATGAATTAA+GGG - chr3_3:64709564-64709583 None:intergenic 10.0%
!! TAAAGAATATAAATGAATTA+AGG - chr3_3:64709565-64709584 None:intergenic 10.0%
!!! AAAATAATTTGTTAAAATGT+TGG + chr3_3:64710006-64710025 Msa0464630:intron 10.0%
!!! TTTAACTTAATTGTTGATTT+TGG - chr3_3:64709230-64709249 None:intergenic 15.0%
!!! ACTTATACTTTTTATATTTG+TGG + chr3_3:64710438-64710457 Msa0464630:intron 15.0%
!! GTGTTATAAAATAAAATTGA+TGG + chr3_3:64710634-64710653 Msa0464630:intron 15.0%
!!! TTGATTCAATTTGTTTAATT+TGG + chr3_3:64710843-64710862 Msa0464630:three_prime_UTR 15.0%
!!! TTTAACTTAATTGTTGATTT+TGG - chr3_3:64709230-64709249 None:intergenic 15.0%
!!! ACTTATACTTTTTATATTTG+TGG + chr3_3:64710438-64710457 Msa0464630:intron 15.0%
!! GTGTTATAAAATAAAATTGA+TGG + chr3_3:64710634-64710653 Msa0464630:intron 15.0%
!!! TTGATTCAATTTGTTTAATT+TGG + chr3_3:64710843-64710862 Msa0464630:three_prime_UTR 15.0%
!! TTTCCTAAAGTCTATAATAT+TGG + chr3_3:64709259-64709278 Msa0464630:five_prime_UTR 20.0%
!! TATACTTTGACAAAGAAAAA+TGG + chr3_3:64709855-64709874 Msa0464630:intron 20.0%
!! ATTATGAGATGAATATTAGA+AGG + chr3_3:64709964-64709983 Msa0464630:intron 20.0%
!!! CTAAGGAAACAAAATAATTT+TGG - chr3_3:64710167-64710186 None:intergenic 20.0%
!!! ATTTTGTTTCCTTAGTAATT+AGG + chr3_3:64710172-64710191 Msa0464630:intron 20.0%
!! AAAAGATTCATTTATAGTCA+AGG - chr3_3:64710263-64710282 None:intergenic 20.0%
!! AAGACATTCGAATAATTAAA+AGG + chr3_3:64710304-64710323 Msa0464630:intron 20.0%
!! AGACATTCGAATAATTAAAA+GGG + chr3_3:64710305-64710324 Msa0464630:intron 20.0%
!! TAGATCTTCAATAAGATTTA+GGG + chr3_3:64710563-64710582 Msa0464630:intron 20.0%
!!! GAAAGTATAAAGAAAGAATA+TGG - chr3_3:64710811-64710830 None:intergenic 20.0%
!!! AAAATGAGGATATTTTTATC+AGG - chr3_3:64711045-64711064 None:intergenic 20.0%
!! TTTCCTAAAGTCTATAATAT+TGG + chr3_3:64709259-64709278 Msa0464630:five_prime_UTR 20.0%
!! TATACTTTGACAAAGAAAAA+TGG + chr3_3:64709855-64709874 Msa0464630:intron 20.0%
!! ATTATGAGATGAATATTAGA+AGG + chr3_3:64709964-64709983 Msa0464630:intron 20.0%
!!! CTAAGGAAACAAAATAATTT+TGG - chr3_3:64710167-64710186 None:intergenic 20.0%
!!! ATTTTGTTTCCTTAGTAATT+AGG + chr3_3:64710172-64710191 Msa0464630:intron 20.0%
!! AAAAGATTCATTTATAGTCA+AGG - chr3_3:64710263-64710282 None:intergenic 20.0%
!! AAGACATTCGAATAATTAAA+AGG + chr3_3:64710304-64710323 Msa0464630:intron 20.0%
!! AGACATTCGAATAATTAAAA+GGG + chr3_3:64710305-64710324 Msa0464630:intron 20.0%
!! TAGATCTTCAATAAGATTTA+GGG + chr3_3:64710563-64710582 Msa0464630:intron 20.0%
!!! GAAAGTATAAAGAAAGAATA+TGG - chr3_3:64710811-64710830 None:intergenic 20.0%
!!! AAAATGAGGATATTTTTATC+AGG - chr3_3:64711045-64711064 None:intergenic 20.0%
! CAACCAATATTATAGACTTT+AGG - chr3_3:64709265-64709284 None:intergenic 25.0%
! CTAAAGTCTATAATATTGGT+TGG + chr3_3:64709263-64709282 Msa0464630:five_prime_UTR 25.0%
! GATGAATCAATTTAAATCGA+CGG + chr3_3:64709610-64709629 Msa0464630:intron 25.0%
! CACAATGAATAATCATGATT+TGG + chr3_3:64709648-64709667 Msa0464630:intron 25.0%
!! ATGATTTTGTTGAAGTTTCA+AGG - chr3_3:64709685-64709704 None:intergenic 25.0%
! TTGAAACTTCAACAAAATCA+TGG + chr3_3:64709684-64709703 Msa0464630:intron 25.0%
!!! TTCCATCTAGAGTTTTTTAA+AGG - chr3_3:64709739-64709758 None:intergenic 25.0%
! TTTAAAAAACTCTAGATGGA+AGG + chr3_3:64709738-64709757 Msa0464630:intron 25.0%
! CTATCTAAACCTAATTACTA+AGG - chr3_3:64710184-64710203 None:intergenic 25.0%
! GTAGATCTTCAATAAGATTT+AGG + chr3_3:64710562-64710581 Msa0464630:intron 25.0%
!! ATGGATATGCTATTTACAAA+TGG + chr3_3:64710736-64710755 Msa0464630:CDS 25.0%
!! TAATTGTTGAACATGTTTTG+TGG + chr3_3:64710777-64710796 Msa0464630:exon 25.0%
!!! CTTTTGAGTAGAAAATCAAA+AGG + chr3_3:64710910-64710929 Msa0464630:three_prime_UTR 25.0%
! TTTATCAGGAAGAATCAAAT+TGG - chr3_3:64711031-64711050 None:intergenic 25.0%
! CTGTTACATATGTAAAAATG+AGG - chr3_3:64711059-64711078 None:intergenic 25.0%
!!! CTCATTTTTACATATGTAAC+AGG + chr3_3:64711057-64711076 Msa0464630:three_prime_UTR 25.0%
! CAACCAATATTATAGACTTT+AGG - chr3_3:64709265-64709284 None:intergenic 25.0%
! CTAAAGTCTATAATATTGGT+TGG + chr3_3:64709263-64709282 Msa0464630:five_prime_UTR 25.0%
! GATGAATCAATTTAAATCGA+CGG + chr3_3:64709610-64709629 Msa0464630:intron 25.0%
! CACAATGAATAATCATGATT+TGG + chr3_3:64709648-64709667 Msa0464630:intron 25.0%
!! ATGATTTTGTTGAAGTTTCA+AGG - chr3_3:64709685-64709704 None:intergenic 25.0%
! TTGAAACTTCAACAAAATCA+TGG + chr3_3:64709684-64709703 Msa0464630:intron 25.0%
!!! TTCCATCTAGAGTTTTTTAA+AGG - chr3_3:64709739-64709758 None:intergenic 25.0%
! TTTAAAAAACTCTAGATGGA+AGG + chr3_3:64709738-64709757 Msa0464630:intron 25.0%
! CTATCTAAACCTAATTACTA+AGG - chr3_3:64710184-64710203 None:intergenic 25.0%
! GTAGATCTTCAATAAGATTT+AGG + chr3_3:64710562-64710581 Msa0464630:intron 25.0%
!! ATGGATATGCTATTTACAAA+TGG + chr3_3:64710736-64710755 Msa0464630:CDS 25.0%
!! TAATTGTTGAACATGTTTTG+TGG + chr3_3:64710777-64710796 Msa0464630:exon 25.0%
!!! CTTTTGAGTAGAAAATCAAA+AGG + chr3_3:64710910-64710929 Msa0464630:three_prime_UTR 25.0%
! TTTATCAGGAAGAATCAAAT+TGG - chr3_3:64711031-64711050 None:intergenic 25.0%
! CTGTTACATATGTAAAAATG+AGG - chr3_3:64711059-64711078 None:intergenic 25.0%
!!! CTCATTTTTACATATGTAAC+AGG + chr3_3:64711057-64711076 Msa0464630:three_prime_UTR 25.0%
!!! TTTTGGTTACTTGTTATGAG+TGG - chr3_3:64709213-64709232 None:intergenic 30.0%
! GTCCTTTAAAAAACTCTAGA+TGG + chr3_3:64709734-64709753 Msa0464630:intron 30.0%
! CCAAAGTCGATATTTTCAAA+AGG - chr3_3:64709789-64709808 None:intergenic 30.0%
!!! CCTTTTGAAAATATCGACTT+TGG + chr3_3:64709786-64709805 Msa0464630:intron 30.0%
GAGAACTAATTGGACTTTAT+CGG - chr3_3:64709895-64709914 None:intergenic 30.0%
CATTACTAGTGAGAACTAAT+TGG - chr3_3:64709905-64709924 None:intergenic 30.0%
!!! AACCCAAGACATCATTTTTT+AGG + chr3_3:64710137-64710156 Msa0464630:intron 30.0%
!!! ACCCAAGACATCATTTTTTA+GGG + chr3_3:64710138-64710157 Msa0464630:intron 30.0%
!! ACATCTTTATTGATTCGTTC+AGG + chr3_3:64710329-64710348 Msa0464630:intron 30.0%
GACACCAAAAATCTTAAGAT+CGG + chr3_3:64710351-64710370 Msa0464630:intron 30.0%
TTATATTTGTGGCCATGAAA+TGG + chr3_3:64710449-64710468 Msa0464630:intron 30.0%
!! TCTTTTGGTAATCCATTTCA+TGG - chr3_3:64710464-64710483 None:intergenic 30.0%
!!! GCTCTTTTAGAATATCATCA+AGG - chr3_3:64710526-64710545 None:intergenic 30.0%
! AGAATTTTCTTCTATGATCC+AGG + chr3_3:64710670-64710689 Msa0464630:intron 30.0%
ATTGTTTATACCGTGGTATA+TGG + chr3_3:64710717-64710736 Msa0464630:CDS 30.0%
AATAGCATATCCATATACCA+CGG - chr3_3:64710730-64710749 None:intergenic 30.0%
! GATATGCTATTTACAAATGG+TGG + chr3_3:64710739-64710758 Msa0464630:CDS 30.0%
! ATAATCACTGTTGTGGTTTT+TGG - chr3_3:64710875-64710894 None:intergenic 30.0%
! TTTGATGGCATATGAAAATG+GGG - chr3_3:64710955-64710974 None:intergenic 30.0%
! CTTTGATGGCATATGAAAAT+GGG - chr3_3:64710956-64710975 None:intergenic 30.0%
! ACTTTGATGGCATATGAAAA+TGG - chr3_3:64710957-64710976 None:intergenic 30.0%
!! TATGAGCTTTAAATGCAAAC+GGG - chr3_3:64709144-64709163 None:intergenic 30.0%
!! GTATGAGCTTTAAATGCAAA+CGG - chr3_3:64709145-64709164 None:intergenic 30.0%
!!! TTTTGGTTACTTGTTATGAG+TGG - chr3_3:64709213-64709232 None:intergenic 30.0%
! GTCCTTTAAAAAACTCTAGA+TGG + chr3_3:64709734-64709753 Msa0464630:intron 30.0%
! CCAAAGTCGATATTTTCAAA+AGG - chr3_3:64709789-64709808 None:intergenic 30.0%
!!! CCTTTTGAAAATATCGACTT+TGG + chr3_3:64709786-64709805 Msa0464630:intron 30.0%
GAGAACTAATTGGACTTTAT+CGG - chr3_3:64709895-64709914 None:intergenic 30.0%
CATTACTAGTGAGAACTAAT+TGG - chr3_3:64709905-64709924 None:intergenic 30.0%
!!! AACCCAAGACATCATTTTTT+AGG + chr3_3:64710137-64710156 Msa0464630:intron 30.0%
!!! ACCCAAGACATCATTTTTTA+GGG + chr3_3:64710138-64710157 Msa0464630:intron 30.0%
!! ACATCTTTATTGATTCGTTC+AGG + chr3_3:64710329-64710348 Msa0464630:intron 30.0%
GACACCAAAAATCTTAAGAT+CGG + chr3_3:64710351-64710370 Msa0464630:intron 30.0%
TTATATTTGTGGCCATGAAA+TGG + chr3_3:64710449-64710468 Msa0464630:intron 30.0%
!! TCTTTTGGTAATCCATTTCA+TGG - chr3_3:64710464-64710483 None:intergenic 30.0%
!!! GCTCTTTTAGAATATCATCA+AGG - chr3_3:64710526-64710545 None:intergenic 30.0%
! AGAATTTTCTTCTATGATCC+AGG + chr3_3:64710670-64710689 Msa0464630:intron 30.0%
ATTGTTTATACCGTGGTATA+TGG + chr3_3:64710717-64710736 Msa0464630:CDS 30.0%
AATAGCATATCCATATACCA+CGG - chr3_3:64710730-64710749 None:intergenic 30.0%
! GATATGCTATTTACAAATGG+TGG + chr3_3:64710739-64710758 Msa0464630:CDS 30.0%
! ATAATCACTGTTGTGGTTTT+TGG - chr3_3:64710875-64710894 None:intergenic 30.0%
! TTTGATGGCATATGAAAATG+GGG - chr3_3:64710955-64710974 None:intergenic 30.0%
! CTTTGATGGCATATGAAAAT+GGG - chr3_3:64710956-64710975 None:intergenic 30.0%
! ACTTTGATGGCATATGAAAA+TGG - chr3_3:64710957-64710976 None:intergenic 30.0%
! TTACAATTACGGTAGTGGTA+AGG - chr3_3:64709184-64709203 None:intergenic 35.0%
TATCAATCTCATCACAACCA+TGG + chr3_3:64709291-64709310 Msa0464630:exon 35.0%
! CTCTAAGAACCTCTATACTT+TGG + chr3_3:64709326-64709345 Msa0464630:CDS 35.0%
ATGTTCGTTACCTATGTGTT+GGG + chr3_3:64709400-64709419 Msa0464630:CDS 35.0%
! TTGGGTATTGTTGGAATTTC+TGG + chr3_3:64709418-64709437 Msa0464630:CDS 35.0%
TTAACCCGAAGTTATTACAG+TGG - chr3_3:64709712-64709731 None:intergenic 35.0%
! CTGTAATAACTTCGGGTTAA+AGG + chr3_3:64709712-64709731 Msa0464630:intron 35.0%
TACATCCAATAGAGCTAAAG+AGG + chr3_3:64710063-64710082 Msa0464630:intron 35.0%
TAAAGAGGTGAAGTGACATA+AGG + chr3_3:64710078-64710097 Msa0464630:intron 35.0%
TGAAGTGACATAAGGTACAT+GGG + chr3_3:64710086-64710105 Msa0464630:intron 35.0%
CCCCTAAAAAATGATGTCTT+GGG - chr3_3:64710142-64710161 None:intergenic 35.0%
!!! CCCAAGACATCATTTTTTAG+GGG + chr3_3:64710139-64710158 Msa0464630:intron 35.0%
ACCCCTAAAAAATGATGTCT+TGG - chr3_3:64710143-64710162 None:intergenic 35.0%
!! AAGAGCATAGAGTGTTTTCT+AGG + chr3_3:64710540-64710559 Msa0464630:intron 35.0%
! AAATGGTGGAAGTATGTATC+TGG + chr3_3:64710753-64710772 Msa0464630:CDS 35.0%
! TTACAATTACGGTAGTGGTA+AGG - chr3_3:64709184-64709203 None:intergenic 35.0%
TATCAATCTCATCACAACCA+TGG + chr3_3:64709291-64709310 Msa0464630:exon 35.0%
! CTCTAAGAACCTCTATACTT+TGG + chr3_3:64709326-64709345 Msa0464630:CDS 35.0%
ATGTTCGTTACCTATGTGTT+GGG + chr3_3:64709400-64709419 Msa0464630:CDS 35.0%
! TTGGGTATTGTTGGAATTTC+TGG + chr3_3:64709418-64709437 Msa0464630:CDS 35.0%
TTAACCCGAAGTTATTACAG+TGG - chr3_3:64709712-64709731 None:intergenic 35.0%
! CTGTAATAACTTCGGGTTAA+AGG + chr3_3:64709712-64709731 Msa0464630:intron 35.0%
TACATCCAATAGAGCTAAAG+AGG + chr3_3:64710063-64710082 Msa0464630:intron 35.0%
TAAAGAGGTGAAGTGACATA+AGG + chr3_3:64710078-64710097 Msa0464630:intron 35.0%
TGAAGTGACATAAGGTACAT+GGG + chr3_3:64710086-64710105 Msa0464630:intron 35.0%
CCCCTAAAAAATGATGTCTT+GGG - chr3_3:64710142-64710161 None:intergenic 35.0%
!!! CCCAAGACATCATTTTTTAG+GGG + chr3_3:64710139-64710158 Msa0464630:intron 35.0%
ACCCCTAAAAAATGATGTCT+TGG - chr3_3:64710143-64710162 None:intergenic 35.0%
!! AAGAGCATAGAGTGTTTTCT+AGG + chr3_3:64710540-64710559 Msa0464630:intron 35.0%
! AAATGGTGGAAGTATGTATC+TGG + chr3_3:64710753-64710772 Msa0464630:CDS 35.0%
CATGCTTACAATTACGGTAG+TGG - chr3_3:64709189-64709208 None:intergenic 40.0%
CACTACCGTAATTGTAAGCA+TGG + chr3_3:64709187-64709206 Msa0464630:five_prime_UTR 40.0%
AGTGGCCATGCTTACAATTA+CGG - chr3_3:64709195-64709214 None:intergenic 40.0%
TTGGCTAGCAGCAGTTATAT+TGG + chr3_3:64709345-64709364 Msa0464630:CDS 40.0%
! GCAGCAGTTATATTGGTAGT+TGG + chr3_3:64709352-64709371 Msa0464630:CDS 40.0%
GATGTTCGTTACCTATGTGT+TGG + chr3_3:64709399-64709418 Msa0464630:CDS 40.0%
! ACCTATGTGTTGGGTATTGT+TGG + chr3_3:64709409-64709428 Msa0464630:CDS 40.0%
TCCAACAATACCCAACACAT+AGG - chr3_3:64709413-64709432 None:intergenic 40.0%
! TGGTGTTCTTTTGCCTGATT+GGG + chr3_3:64709438-64709457 Msa0464630:CDS 40.0%
CGGTTGAAATAATCCCAATC+AGG - chr3_3:64709454-64709473 None:intergenic 40.0%
TCAACCGTGATATTTCTCGT+TGG + chr3_3:64709467-64709486 Msa0464630:CDS 40.0%
AAGGCCAACGAGAAATATCA+CGG - chr3_3:64709474-64709493 None:intergenic 40.0%
TCCTCAACAGTAACAGGATA+AGG - chr3_3:64709493-64709512 None:intergenic 40.0%
GATCTTTCCTCAACAGTAAC+AGG - chr3_3:64709499-64709518 None:intergenic 40.0%
!! TGGTGCCACTGTAATAACTT+CGG + chr3_3:64709704-64709723 Msa0464630:intron 40.0%
!! CTTCACCTCTTTAGCTCTAT+TGG - chr3_3:64710071-64710090 None:intergenic 40.0%
GTGAAGTGACATAAGGTACA+TGG + chr3_3:64710085-64710104 Msa0464630:intron 40.0%
! AGGGCCGATCTTAAGATTTT+TGG - chr3_3:64710358-64710377 None:intergenic 40.0%
! ATGATAGTGTTGCCTTGTCA+GGG - chr3_3:64710377-64710396 None:intergenic 40.0%
! AATGATAGTGTTGCCTTGTC+AGG - chr3_3:64710378-64710397 None:intergenic 40.0%
GTTTACATGTTCTCCTCTGA+GGG + chr3_3:64710692-64710711 Msa0464630:CDS 40.0%
GTATAAACAATCACCCTCAG+AGG - chr3_3:64710708-64710727 None:intergenic 40.0%
CTTGTCGATAATCACTGTTG+TGG - chr3_3:64710882-64710901 None:intergenic 40.0%
CACAACAGTGATTATCGACA+AGG + chr3_3:64710880-64710899 Msa0464630:three_prime_UTR 40.0%
CAACTTGTGCTAGACTTTGA+TGG - chr3_3:64710970-64710989 None:intergenic 40.0%
! TGTGTGAGTGTTGTAAACTC+TGG + chr3_3:64711003-64711022 Msa0464630:three_prime_UTR 40.0%
CATGCTTACAATTACGGTAG+TGG - chr3_3:64709189-64709208 None:intergenic 40.0%
CACTACCGTAATTGTAAGCA+TGG + chr3_3:64709187-64709206 Msa0464630:five_prime_UTR 40.0%
AGTGGCCATGCTTACAATTA+CGG - chr3_3:64709195-64709214 None:intergenic 40.0%
TTGGCTAGCAGCAGTTATAT+TGG + chr3_3:64709345-64709364 Msa0464630:CDS 40.0%
! GCAGCAGTTATATTGGTAGT+TGG + chr3_3:64709352-64709371 Msa0464630:CDS 40.0%
GATGTTCGTTACCTATGTGT+TGG + chr3_3:64709399-64709418 Msa0464630:CDS 40.0%
! ACCTATGTGTTGGGTATTGT+TGG + chr3_3:64709409-64709428 Msa0464630:CDS 40.0%
TCCAACAATACCCAACACAT+AGG - chr3_3:64709413-64709432 None:intergenic 40.0%
! TGGTGTTCTTTTGCCTGATT+GGG + chr3_3:64709438-64709457 Msa0464630:CDS 40.0%
CGGTTGAAATAATCCCAATC+AGG - chr3_3:64709454-64709473 None:intergenic 40.0%
TCAACCGTGATATTTCTCGT+TGG + chr3_3:64709467-64709486 Msa0464630:CDS 40.0%
AAGGCCAACGAGAAATATCA+CGG - chr3_3:64709474-64709493 None:intergenic 40.0%
TCCTCAACAGTAACAGGATA+AGG - chr3_3:64709493-64709512 None:intergenic 40.0%
GATCTTTCCTCAACAGTAAC+AGG - chr3_3:64709499-64709518 None:intergenic 40.0%
!! TGGTGCCACTGTAATAACTT+CGG + chr3_3:64709704-64709723 Msa0464630:intron 40.0%
!! CTTCACCTCTTTAGCTCTAT+TGG - chr3_3:64710071-64710090 None:intergenic 40.0%
GTGAAGTGACATAAGGTACA+TGG + chr3_3:64710085-64710104 Msa0464630:intron 40.0%
! AGGGCCGATCTTAAGATTTT+TGG - chr3_3:64710358-64710377 None:intergenic 40.0%
! ATGATAGTGTTGCCTTGTCA+GGG - chr3_3:64710377-64710396 None:intergenic 40.0%
! AATGATAGTGTTGCCTTGTC+AGG - chr3_3:64710378-64710397 None:intergenic 40.0%
GTTTACATGTTCTCCTCTGA+GGG + chr3_3:64710692-64710711 Msa0464630:CDS 40.0%
GTATAAACAATCACCCTCAG+AGG - chr3_3:64710708-64710727 None:intergenic 40.0%
CTTGTCGATAATCACTGTTG+TGG - chr3_3:64710882-64710901 None:intergenic 40.0%
CACAACAGTGATTATCGACA+AGG + chr3_3:64710880-64710899 Msa0464630:three_prime_UTR 40.0%
CAACTTGTGCTAGACTTTGA+TGG - chr3_3:64710970-64710989 None:intergenic 40.0%
! TGTGTGAGTGTTGTAAACTC+TGG + chr3_3:64711003-64711022 Msa0464630:three_prime_UTR 40.0%
TAGAGCTGCATCATTTGCCA+TGG - chr3_3:64709311-64709330 None:intergenic 45.0%
TGCTGCTAGCCAAAGTATAG+AGG - chr3_3:64709338-64709357 None:intergenic 45.0%
! CTGGTGTTCTTTTGCCTGAT+TGG + chr3_3:64709437-64709456 Msa0464630:CDS 45.0%
GCCTTATCCTGTTACTGTTG+AGG + chr3_3:64709489-64709508 Msa0464630:CDS 45.0%
TCAGCAGCTTCTCTTTCTCA+TGG + chr3_3:64709517-64709536 Msa0464630:CDS 45.0%
!! GGTGCCACTGTAATAACTTC+GGG + chr3_3:64709705-64709724 Msa0464630:intron 45.0%
AGTGACATAAGGTACATGGG+TGG + chr3_3:64710089-64710108 Msa0464630:intron 45.0%
! CAGCTGAGTCTATGCTCTTT+TGG - chr3_3:64710479-64710498 None:intergenic 45.0%
AGAGCATAGACTCAGCTGTT+AGG + chr3_3:64710481-64710500 Msa0464630:intron 45.0%
CAGAGGAGAACATGTAAACC+TGG - chr3_3:64710691-64710710 None:intergenic 45.0%
GGTTTACATGTTCTCCTCTG+AGG + chr3_3:64710691-64710710 Msa0464630:intron 45.0%
GAGGGTGATTGTTTATACCG+TGG + chr3_3:64710710-64710729 Msa0464630:CDS 45.0%
TAGAGCTGCATCATTTGCCA+TGG - chr3_3:64709311-64709330 None:intergenic 45.0%
TGCTGCTAGCCAAAGTATAG+AGG - chr3_3:64709338-64709357 None:intergenic 45.0%
! CTGGTGTTCTTTTGCCTGAT+TGG + chr3_3:64709437-64709456 Msa0464630:CDS 45.0%
GCCTTATCCTGTTACTGTTG+AGG + chr3_3:64709489-64709508 Msa0464630:CDS 45.0%
TCAGCAGCTTCTCTTTCTCA+TGG + chr3_3:64709517-64709536 Msa0464630:CDS 45.0%
!! GGTGCCACTGTAATAACTTC+GGG + chr3_3:64709705-64709724 Msa0464630:intron 45.0%
AGTGACATAAGGTACATGGG+TGG + chr3_3:64710089-64710108 Msa0464630:intron 45.0%
! CAGCTGAGTCTATGCTCTTT+TGG - chr3_3:64710479-64710498 None:intergenic 45.0%
AGAGCATAGACTCAGCTGTT+AGG + chr3_3:64710481-64710500 Msa0464630:intron 45.0%
CAGAGGAGAACATGTAAACC+TGG - chr3_3:64710691-64710710 None:intergenic 45.0%
GGTTTACATGTTCTCCTCTG+AGG + chr3_3:64710691-64710710 Msa0464630:intron 45.0%
GAGGGTGATTGTTTATACCG+TGG + chr3_3:64710710-64710729 Msa0464630:CDS 45.0%
!! TAAAGTAAAATTTAAATTAA+GGG - chr3_3:64710612-64710631 None:intergenic 5.0%
!! ATAAAGTAAAATTTAAATTA+AGG - chr3_3:64710613-64710632 None:intergenic 5.0%
!! TAAAGTAAAATTTAAATTAA+GGG - chr3_3:64710612-64710631 None:intergenic 5.0%
!! ATAAAGTAAAATTTAAATTA+AGG - chr3_3:64710613-64710632 None:intergenic 5.0%
ATAAGGTACATGGGTGGCCT+TGG + chr3_3:64710095-64710114 Msa0464630:intron 50.0%
TCTTAAGATCGGCCCTGACA+AGG + chr3_3:64710362-64710381 Msa0464630:intron 50.0%
ATAAGGTACATGGGTGGCCT+TGG + chr3_3:64710095-64710114 Msa0464630:intron 50.0%
TCTTAAGATCGGCCCTGACA+AGG + chr3_3:64710362-64710381 Msa0464630:intron 50.0%
! TACATGGGTGGCCTTGGAGT+GGG + chr3_3:64710101-64710120 Msa0464630:intron 55.0%
! TACATGGGTGGCCTTGGAGT+GGG + chr3_3:64710101-64710120 Msa0464630:intron 55.0%
! GTACATGGGTGGCCTTGGAG+TGG + chr3_3:64710100-64710119 Msa0464630:intron 60.0%
! GTACATGGGTGGCCTTGGAG+TGG + chr3_3:64710100-64710119 Msa0464630:intron 60.0%
! TGGCCTTGGAGTGGGCAGGA+GGG + chr3_3:64710109-64710128 Msa0464630:intron 65.0%
! TGGCCTTGGAGTGGGCAGGA+GGG + chr3_3:64710109-64710128 Msa0464630:intron 65.0%
! TGGGTGGCCTTGGAGTGGGC+AGG + chr3_3:64710105-64710124 Msa0464630:intron 70.0%
! GTGGCCTTGGAGTGGGCAGG+AGG + chr3_3:64710108-64710127 Msa0464630:intron 70.0%
GGCCTTGGAGTGGGCAGGAG+GGG + chr3_3:64710110-64710129 Msa0464630:intron 70.0%
CACCCCTCCTGCCCACTCCA+AGG - chr3_3:64710115-64710134 None:intergenic 70.0%
! TGGGTGGCCTTGGAGTGGGC+AGG + chr3_3:64710105-64710124 Msa0464630:intron 70.0%
! GTGGCCTTGGAGTGGGCAGG+AGG + chr3_3:64710108-64710127 Msa0464630:intron 70.0%
GGCCTTGGAGTGGGCAGGAG+GGG + chr3_3:64710110-64710129 Msa0464630:intron 70.0%
CACCCCTCCTGCCCACTCCA+AGG - chr3_3:64710115-64710134 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 64709144 64711113 64709144 ID=Msa0464630;Name=Msa0464630
chr3_3 mRNA 64709144 64711113 64709144 ID=Msa0464630-mRNA-1;Parent=Msa0464630;Name=Msa0464630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=166|1|1|1|1|1|2|334|110
chr3_3 exon 64709144 64709554 64709144 ID=Msa0464630-mRNA-1:exon:14267;Parent=Msa0464630-mRNA-1
chr3_3 exon 64710692 64711113 64710692 ID=Msa0464630-mRNA-1:exon:14268;Parent=Msa0464630-mRNA-1
chr3_3 five_prime_UTR 64709144 64709309 64709144 ID=Msa0464630-mRNA-1:five_prime_utr;Parent=Msa0464630-mRNA-1
chr3_3 CDS 64709310 64709554 64709310 ID=Msa0464630-mRNA-1:cds;Parent=Msa0464630-mRNA-1
chr3_3 CDS 64710692 64710779 64710692 ID=Msa0464630-mRNA-1:cds;Parent=Msa0464630-mRNA-1
chr3_3 three_prime_UTR 64710780 64711113 64710780 ID=Msa0464630-mRNA-1:three_prime_utr;Parent=Msa0464630-mRNA-1
Gene Sequence

>Msa0464630

ATGGCAAATGATGCAGCTCTAAGAACCTCTATACTTTGGCTAGCAGCAGTTATATTGGTAGTTGGTATATGCACATACTCTTTCAAGAAGATGTTCGTTACCTATGTGTTGGGTATTGTTGGAATTTCTGGTGTTCTTTTGCCTGATTGGGATTATTTCAACCGTGATATTTCTCGTTGGCCTTATCCTGTTACTGTTGAGGAAAGATCAGCAGCTTCTCTTTCTCATGGATCTGTATTTCTAAAGTTTACATGTTCTCCTCTGAGGGTGATTGTTTATACCGTGGTATATGGATATGCTATTTACAAATGGTGGAAGTATGTATCTGGCTAA

Protein sequence

>Msa0464630

MANDAALRTSILWLAAVILVVGICTYSFKKMFVTYVLGIVGISGVLLPDWDYFNRDISRWPYPVTVEERSAASLSHGSVFLKFTCSPLRVIVYTVVYGYAIYKWWKYVSG*