AlfalfaGEDB | Msa0288190

M. sativa cultivar zhongmu-4 / Msa0288190

KEGG: K00485
GO: GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542
PFAM: PF00743.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0288190	XP_039686064.1	93.846	520	31	1	1	519	1	520	0.0	1025

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0288190	sp\|Q9LMA1\|FMO1_ARATH	39.147	516	301	10	4	514	12	519	4.97e-129	389

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0288190	A0A396JCJ9	93.846	520	31	1	1	519	1	520	0.0	1025

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012440	Msa0288190	0.820411	6.959049e-53	-8.615850e-47
Msa0057240	Msa0288190	0.819377	1.199212e-52	-8.615850e-47
Msa0084500	Msa0288190	0.807660	4.535785e-50	-8.615850e-47
Msa0141100	Msa0288190	0.810579	1.074378e-50	-8.615850e-47
Msa0149560	Msa0288190	0.824359	8.424176e-54	-8.615850e-47
Msa0173090	Msa0288190	0.802530	5.370233e-49	-8.615850e-47
Msa0176470	Msa0288190	0.808144	3.577788e-50	-8.615850e-47
Msa0191040	Msa0288190	0.881193	2.942469e-70	-8.615850e-47
Msa0206800	Msa0288190	0.925740	1.217460e-90	-8.615850e-47
Msa0219190	Msa0288190	0.802295	6.002636e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0288190	MtrunA17_Chr2g0305211	93.846	520	31	1	1	519	1	520	0.0	1025
Msa0288190	MtrunA17_Chr2g0305231	93.846	520	31	1	1	519	1	520	0.0	1025
Msa0288190	MtrunA17_Chr2g0304721	78.846	520	106	2	1	519	1	517	0.0	855
Msa0288190	MtrunA17_Chr2g0304651	75.192	520	126	2	1	519	1	518	0.0	816
Msa0288190	MtrunA17_Chr2g0301661	39.181	513	301	8	5	513	14	519	2.08e-124	374
Msa0288190	MtrunA17_Chr2g0301471	39.494	514	300	8	4	513	13	519	2.99e-122	368
Msa0288190	MtrunA17_Chr4g0070101	40.447	492	280	10	27	513	36	519	3.97e-122	368
Msa0288190	MtrunA17_Chr4g0070111	39.223	283	167	4	233	514	1	279	1.90e-67	219
Msa0288190	MtrunA17_Chr2g0286701	37.872	235	141	4	1	233	10	241	6.78e-56	189
Msa0288190	MtrunA17_Chr4g0070121	44.000	200	111	1	27	225	36	235	4.94e-52	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0288190	AT1G19250.1	39.147	516	301	10	4	514	12	519	5.06e-130	389
Msa0288190	AT5G45180.1	36.382	492	260	11	4	490	12	455	5.59e-105	322
Msa0288190	AT1G62560.2	25.197	254	131	10	3	229	11	232	8.52e-14	73.6
Msa0288190	AT1G62560.1	25.197	254	131	10	3	229	11	232	9.49e-14	73.9
Msa0288190	AT1G62620.2	25.000	252	135	9	4	229	12	235	3.21e-13	72.0
Msa0288190	AT1G62620.1	25.000	252	135	9	4	229	12	235	3.83e-13	72.0
Msa0288190	AT1G63370.2	25.000	252	135	7	4	229	12	235	5.72e-13	70.5
Msa0288190	AT1G63370.1	25.000	252	135	7	4	229	12	235	6.19e-13	71.2
Msa0288190	AT4G28720.1	26.509	381	207	20	6	376	26	343	6.77e-13	71.2
Msa0288190	AT1G21430.1	26.273	373	208	14	5	374	9	317	7.48e-13	70.9

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Find 122 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCATTGAAATCAGT+GGG	0.537907	2_3:+32411422	None:intergenic
AAAATAAGTGGGGTGGGGTG+GGG	0.284960	2_3:-32411310	Msa0288190:three_prime_UTR
AAAGAAGGTTTAACCATTAA+TGG	0.223564	2_3:-32413298	Msa0288190:CDS
AAAGACCATTGAAATCAGTG+GGG	0.785537	2_3:+32411423	None:intergenic
AAAGGCCCAGAAATCTTTAA+AGG	0.357841	2_3:-32414765	Msa0288190:CDS
AAAGTAGAGAGAAATAGAGA+AGG	0.543386	2_3:+32416012	None:intergenic
AAATAAGTGGGGTGGGGTGG+GGG	0.249747	2_3:-32411309	Msa0288190:three_prime_UTR
AAATGAAGTCATGGGAATTA+TGG	0.290096	2_3:-32415561	Msa0288190:CDS
AACAAGAGAGTTACAATAGT+AGG	0.452094	2_3:-32414678	Msa0288190:CDS
AAGCTGCCACTGAAGAAGTA+CGG	0.532930	2_3:-32413451	Msa0288190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAGAGAGAAATAGAGA+AGG	+	chr2_3:32411280-32411299	None:intergenic	30.0%
GAATCTTATGTATGGAATGA+TGG	+	chr2_3:32411662-32411681	None:intergenic	30.0%
TCATGAAGAAATGAAGTCAT+GGG	-	chr2_3:32411720-32411739	Msa0288190:CDS	30.0%
AAATGAAGTCATGGGAATTA+TGG	-	chr2_3:32411728-32411747	Msa0288190:CDS	30.0%
TTCATATTTACATACCTCGA+TGG	+	chr2_3:32411824-32411843	None:intergenic	30.0%
AAAAAATCAAATTGCAGTGG+TGG	-	chr2_3:32411962-32411981	Msa0288190:intron	30.0%
TCTTAAACCTCCAAACATAT+TGG	+	chr2_3:32412017-32412036	None:intergenic	30.0%
AAGTTTGTCATTCTTTGCAT+TGG	-	chr2_3:32412458-32412477	Msa0288190:intron	30.0%
AGGTAAAGTTATGCATTCTT+TGG	-	chr2_3:32412544-32412563	Msa0288190:intron	30.0%
AACAAGAGAGTTACAATAGT+AGG	-	chr2_3:32412611-32412630	Msa0288190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	32411243	32416068	32411243	ID=Msa0288190;Name=Msa0288190
chr2_3	mRNA	32411243	32416068	32411243	ID=Msa0288190-mRNA-1;Parent=Msa0288190;Name=Msa0288190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148\|1\|1\|1\|1\|1\|5\|169\|519
chr2_3	exon	32411243	32411760	32411243	ID=Msa0288190-mRNA-1:exon:10841;Parent=Msa0288190-mRNA-1
chr2_3	exon	32413157	32413515	32413157	ID=Msa0288190-mRNA-1:exon:10840;Parent=Msa0288190-mRNA-1
chr2_3	exon	32414336	32414511	32414336	ID=Msa0288190-mRNA-1:exon:10839;Parent=Msa0288190-mRNA-1
chr2_3	exon	32414628	32414865	32414628	ID=Msa0288190-mRNA-1:exon:10838;Parent=Msa0288190-mRNA-1
chr2_3	exon	32415483	32416068	32415483	ID=Msa0288190-mRNA-1:exon:10837;Parent=Msa0288190-mRNA-1
chr2_3	five_prime_UTR	32415921	32416068	32415921	ID=Msa0288190-mRNA-1:five_prime_utr;Parent=Msa0288190-mRNA-1
chr2_3	CDS	32415483	32415920	32415483	ID=Msa0288190-mRNA-1:cds;Parent=Msa0288190-mRNA-1
chr2_3	CDS	32414628	32414865	32414628	ID=Msa0288190-mRNA-1:cds;Parent=Msa0288190-mRNA-1
chr2_3	CDS	32414336	32414511	32414336	ID=Msa0288190-mRNA-1:cds;Parent=Msa0288190-mRNA-1
chr2_3	CDS	32413157	32413515	32413157	ID=Msa0288190-mRNA-1:cds;Parent=Msa0288190-mRNA-1
chr2_3	CDS	32411412	32411760	32411412	ID=Msa0288190-mRNA-1:cds;Parent=Msa0288190-mRNA-1
chr2_3	three_prime_UTR	32411243	32411411	32411243	ID=Msa0288190-mRNA-1:three_prime_utr;Parent=Msa0288190-mRNA-1

Gene Sequence

>Msa0288190

ATGGAAAAAAATGTTGCAATTGTTGGGGCAGGAATAAGTGGTATACTTGCCTGCAAATATGTTCTACAAATTGGTTTTCATCCAATTGTCTACGAATCTGATGATGGCATTGGTGGAATATGGAGACATACTATTCAGTCTACCAAACTCCAAACTAACAAACAAGACTTCCAGTTTACAGATTTTCCATGGGATTCTTCTATAAAAGAAGATTTTCCAAGTAATCAACAAGTGCAAGATTATCTTAACTCCTATGCTCAACATTTTTCCATCATTCCATACATAAGATTCAATTCCAAAGTCATTGATATTGATTATGTTGGGGAGTCTCATGAAGAAATGAAGTCATGGGAATTATGGAGTGGTAATGGAAGTCCATTTGGTTCTAAGGGAACTTGGCATCTAACCGTAGAAGATACTAAGAATTTCACCATCGAGGTTCACAAGGCTAAGTTTGTCATTCTTTGCATTGGAAAGTATAGTGGTTTTCCAAATATTCCTAAGTTCCCCCTTGGAAAAGGCCCAGAAATCTTTAAAGGTAAAGTTATGCATTCTTTGGATTATTCTGCCTTAGACAACAAGACTGCAGCTGAAATGATAAAAAACAAGAGAGTTACAATAGTAGGCTCAGGGAAATCTGCTTTTGATATTGCTGCTGAATGTGCAAATGCAAATGGAGTCACTCATCCTTGCACAATTATCCAAAGAACTACACACTGGTTTCTTCCAGATTTTGACATTGCGGGCATTAATCTTGGATACTTATATTTCAACCGTTTTGCGGAGCTTTTAGTACACAAGCCTGGAGAACCATTCCTACTTAGCCTTGTGGCCACTTTACTTTCACCATTGAGAACGGGAATTTCAAAACATGTTGAAACATATTTGAAATGGAAGCTGCCACTGAAGAAGTACGGGCTGGTACCCGATTACAGTTTTCTTCAAGATATCTCTACATGTCGAGCTGGGGTGCTTCCTGATCATTTTTTTGACAAAATAATAAAAGGATCCATCAATATAAAGAAATCACAAAGCTTTAGCTTCTGCAAAGAAGGTTTAACCATTAATGGAGAAGATAAGCCCCAAGAAGCTGACCTAGTTATTCTTGCCACGGGATATAAAGGTGACCAAAAACTTAGGAGCATATTCAAATCTACTATATTTCAAAATTATATCAACGAATCAGCAGACTCAACGGTTCCTATCTACAGGCAAATAATTCACCCTCGAATTCCACAATTGGCAATAATAGGATACGATGACAGCTTATCAAATATTTTTTCTAATGAAATGAGATGTCAATGGCTGGCGCATCTTTTGGATGAAAACATTGAACTTCCTAGCATAAGAGAGATGGAAAATGATGTGAAAATGTGGGAAGAGAACATGAAGCAACATACAAATAATTTTAATTCAAGATCATGCATTACGTGTGGGATATGGTATAACGATCAGTTGTGCAAAGACATGAAATGTAACCATAGAAGAAAGAAGAGTTTTTTTGCTGAGCTATTTGAACCATATGGCCCCACTGATTTCAATGGTCTTTTCCGTAAGTGA

Protein sequence

>Msa0288190

MEKNVAIVGAGISGILACKYVLQIGFHPIVYESDDGIGGIWRHTIQSTKLQTNKQDFQFTDFPWDSSIKEDFPSNQQVQDYLNSYAQHFSIIPYIRFNSKVIDIDYVGESHEEMKSWELWSGNGSPFGSKGTWHLTVEDTKNFTIEVHKAKFVILCIGKYSGFPNIPKFPLGKGPEIFKGKVMHSLDYSALDNKTAAEMIKNKRVTIVGSGKSAFDIAAECANANGVTHPCTIIQRTTHWFLPDFDIAGINLGYLYFNRFAELLVHKPGEPFLLSLVATLLSPLRTGISKHVETYLKWKLPLKKYGLVPDYSFLQDISTCRAGVLPDHFFDKIIKGSINIKKSQSFSFCKEGLTINGEDKPQEADLVILATGYKGDQKLRSIFKSTIFQNYINESADSTVPIYRQIIHPRIPQLAIIGYDDSLSNIFSNEMRCQWLAHLLDENIELPSIREMENDVKMWEENMKQHTNNFNSRSCITCGIWYNDQLCKDMKCNHRRKKSFFAELFEPYGPTDFNGLFRK*