AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875290 MtrunA17_Chr6g0456421 98.744 398 5 0 5 402 1 398 0.0 816
Msa0875290 MtrunA17_Chr5g0414371 44.221 398 203 8 5 402 1 379 1.80e-102 308
Msa0875290 MtrunA17_Chr0c01g0489311 42.054 409 216 10 5 402 1 399 3.29e-100 303
Msa0875290 MtrunA17_Chr5g0414421 42.647 408 204 10 4 402 30 416 3.07e-99 301
Msa0875290 MtrunA17_Chr5g0414441 42.469 405 208 9 5 402 1 387 6.18e-98 297
Msa0875290 MtrunA17_Chr5g0414391 41.960 398 214 8 5 402 1 381 2.70e-95 290
Msa0875290 MtrunA17_Chr5g0414461 42.680 403 203 12 5 402 1 380 1.08e-90 278
Msa0875290 MtrunA17_Chr5g0414451 45.556 90 44 2 122 211 5 89 1.07e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875290 AT1G61600.1 47.754 423 194 8 5 402 1 421 3.06e-118 350
Msa0875290 AT1G13540.1 39.163 406 214 10 5 402 1 381 1.26e-84 263
Msa0875290 AT1G13510.1 37.838 407 217 14 5 402 1 380 6.69e-80 251
Msa0875290 AT1G13520.1 36.881 404 232 8 5 402 1 387 2.54e-78 247
Msa0875290 AT1G13530.1 38.480 408 218 12 5 402 1 385 1.10e-77 245
Msa0875290 AT1G13480.1 40.049 407 215 14 5 402 1 387 1.77e-77 245
Msa0875290 AT1G13470.1 41.133 406 203 14 5 402 1 378 3.88e-75 238
Msa0875290 AT1G13500.1 38.929 411 213 15 5 402 1 386 4.49e-72 231
Msa0875290 AT1G13490.2 37.101 407 222 13 5 402 1 382 7.32e-72 230
Msa0875290 AT1G13490.1 36.364 407 206 15 5 402 1 363 3.59e-65 212
Msa0875290 AT1G13550.1 36.740 411 216 16 5 398 1 384 3.04e-63 208

Find 71 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATACCCTTAATGTAATT+TGG 0.153850 6_1:-11766470 None:intergenic
GAACAAGGTGGTTGGGTTTA+TGG 0.163598 6_1:+11766242 Msa0875290:CDS
CTTTCTTTCACAAATATAAA+TGG 0.184200 6_1:-11765909 None:intergenic
TCACTCTCCAAATTACATTA+AGG 0.196540 6_1:+11766463 Msa0875290:three_prime_UTR
GGATGGAAAGTGAGAATTTC+AGG 0.207908 6_1:+11765756 Msa0875290:CDS
CACCTTTGGTTGTAGGAAAA+TGG 0.225518 6_1:+11765880 Msa0875290:CDS
CTAACCCTTCTCTTATTATA+AGG 0.226999 6_1:-11766173 None:intergenic
GAGTATGAATCTTGAAAATT+TGG 0.263314 6_1:-11765662 None:intergenic
ATGGGAGTAAGAATAAATTA+AGG 0.275137 6_1:+11766430 Msa0875290:exon
AATGGAACAATTGATAATAA+TGG 0.293530 6_1:+11766125 Msa0875290:CDS
CAGAAAATCTCCAAGTAGTT+TGG 0.309974 6_1:+11764285 Msa0875290:CDS
ATGAACAAACTACAAGCATT+AGG 0.322136 6_1:+11764470 Msa0875290:CDS
CACTCTCCAAATTACATTAA+GGG 0.322739 6_1:+11766464 Msa0875290:three_prime_UTR
GTAAGAATAAATTAAGGGTT+TGG 0.325579 6_1:+11766436 Msa0875290:exon
ATACCCTTTGTGTCTGCCTT+TGG 0.326192 6_1:-11764554 None:intergenic
CCATCAGATGCACCATATTC+AGG 0.354060 6_1:+11764316 Msa0875290:CDS
AATTCACCACCTTTGGTTGT+AGG 0.355797 6_1:+11765873 Msa0875290:CDS
CTCATAAGATCAAGTGCAAA+TGG 0.359028 6_1:+11766411 Msa0875290:CDS
GGTGGTTGGGTTTATGGAAA+TGG 0.381100 6_1:+11766248 Msa0875290:CDS
TAGGTTTGGTTGTTATGTTT+TGG 0.382119 6_1:+11766325 Msa0875290:CDS
TGAACAAACTACAAGCATTA+GGG 0.387201 6_1:+11764471 Msa0875290:CDS
TGGGAGTAAGAATAAATTAA+GGG 0.398106 6_1:+11766431 Msa0875290:exon
CATGTCAAAATGAATGGAAT+AGG 0.399945 6_1:+11766306 Msa0875290:CDS
CTGAGAACAATTTGTCTTGA+GGG 0.401827 6_1:-11764429 None:intergenic
AAACTACAAGCATTAGGGTT+TGG 0.421172 6_1:+11764476 Msa0875290:CDS
GGTTGAAGAACAAGGTGGTT+GGG 0.429590 6_1:+11766235 Msa0875290:CDS
AACAATTTGTCTTGAGGGAA+AGG 0.435030 6_1:-11764424 None:intergenic
ATTACTAGATAGCCTGAATA+TGG 0.440006 6_1:-11764328 None:intergenic
GACAGAGAATGATCAGGAAC+AGG 0.442295 6_1:-11764505 None:intergenic
TTTATGGAAATGGGAGAGAA+AGG 0.450997 6_1:+11766258 Msa0875290:CDS
GTGGTTGGGTTTATGGAAAT+GGG 0.452673 6_1:+11766249 Msa0875290:CDS
GTAGTTTGTTCATTCTCTGA+AGG 0.457736 6_1:-11764460 None:intergenic
CAAAATGAATGGAATAGGTT+TGG 0.471107 6_1:+11766311 Msa0875290:CDS
AATATGAAGATACATGTTGT+TGG 0.493215 6_1:+11764368 Msa0875290:CDS
AGGTAACATGTCAAAATGAA+TGG 0.498649 6_1:+11766300 Msa0875290:CDS
GGAATGGAAGCTACAAAGAA+TGG 0.501988 6_1:+11766107 Msa0875290:CDS
GGTGGTATCTCCAAACTACT+TGG 0.502813 6_1:-11764295 None:intergenic
GCAAAATCAATTACACCAGA+TGG 0.503210 6_1:+11765705 Msa0875290:CDS
TTGGAAGACAGAGAATGATC+AGG 0.506050 6_1:-11764511 None:intergenic
AAAAGTATTGATATGTGGAA+TGG 0.508759 6_1:+11766091 Msa0875290:CDS
GGGTTGAAGAACAAGGTGGT+TGG 0.514868 6_1:+11766234 Msa0875290:CDS
AATAAGAGAAGGGTTAGTGT+TGG 0.514996 6_1:+11766179 Msa0875290:CDS
TTATGGAAATGGGAGAGAAA+GGG 0.516779 6_1:+11766259 Msa0875290:CDS
TTGCTTCGCAAAATTCGCAT+TGG 0.519536 6_1:-11766536 None:intergenic
ATAATCCTTATAATAAGAGA+AGG 0.528576 6_1:+11766168 Msa0875290:CDS
AAGAGATTTATTCATGTGGA+AGG 0.531674 6_1:+11766000 Msa0875290:CDS
TCTGATTACATAGTATCTGT+TGG 0.539712 6_1:-11764530 None:intergenic
ACTGAGAACAATTTGTCTTG+AGG 0.540276 6_1:-11764430 None:intergenic
GAGATAGGAAAATGGAAACT+TGG 0.540492 6_1:-11765843 None:intergenic
TCATAAGATCAAGTGCAAAT+GGG 0.540678 6_1:+11766412 Msa0875290:CDS
CAATTATTGATAATATGAGA+TGG 0.545429 6_1:+11766213 Msa0875290:CDS
AATTATTGATAATATGAGAT+GGG 0.564762 6_1:+11766214 Msa0875290:CDS
GAGCCAAAGGCAGACACAAA+GGG 0.573071 6_1:+11764551 Msa0875290:CDS
TAATCCTTATAATAAGAGAA+GGG 0.577271 6_1:+11766169 Msa0875290:CDS
ATGAGATGGGTTGAAGAACA+AGG 0.578823 6_1:+11766227 Msa0875290:CDS
TACTATGTAATCAGAGCCAA+AGG 0.580889 6_1:+11764538 Msa0875290:CDS
AAGCAAGAAATCGGAGAGGT+GGG 0.586906 6_1:+11766553 Msa0875290:three_prime_UTR
AGAGCCAAAGGCAGACACAA+AGG 0.589081 6_1:+11764550 Msa0875290:CDS
TGCAAACTAAATGAAGCTCT+AGG 0.589377 6_1:+11765792 Msa0875290:CDS
GTATACAAATGTTCAAGAGA+AGG 0.591748 6_1:+11765564 Msa0875290:CDS
GAAGCAAGAAATCGGAGAGG+TGG 0.595359 6_1:+11766552 Msa0875290:three_prime_UTR
AAGATTCATACTCATCAAAG+TGG 0.600872 6_1:+11765672 Msa0875290:CDS
TGGGAAGAGATTTATTCATG+TGG 0.601621 6_1:+11765996 Msa0875290:CDS
ATTCATACTCATCAAAGTGG+TGG 0.614180 6_1:+11765675 Msa0875290:CDS
CCTGAATATGGTGCATCTGA+TGG 0.621907 6_1:-11764316 None:intergenic
GGTTGTGACAGTGAAAGAAG+AGG 0.624027 6_1:+11766280 Msa0875290:CDS
TTTGTCTTAGGACATTGGAT+GGG 0.633452 6_1:+11766357 Msa0875290:CDS
GAATATGGTGCATCTGATGG+TGG 0.659576 6_1:-11764313 None:intergenic
GTTGTTGGCGAATATGTCGT+CGG 0.671481 6_1:+11764383 Msa0875290:CDS
TGCGAAGCAAGAAATCGGAG+AGG 0.721505 6_1:+11766549 Msa0875290:three_prime_UTR
AGATGGGTTGAAGAACAAGG+TGG 0.752941 6_1:+11766230 Msa0875290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATTAATTTTTTTGCAT+AGG + chr6_1:11764579-11764598 Msa0875290:intron 15.0%
!!! TTTGAATTCTTTTCTTTTAA+AGG - chr6_1:11764899-11764918 None:intergenic 15.0%
!! TAAACTTATATAAGCTTATA+AGG - chr6_1:11765260-11765279 None:intergenic 15.0%
!!! AATTATTGATAATATGAGAT+GGG + chr6_1:11766214-11766233 Msa0875290:CDS 15.0%
!!! ATGTATTAATTTTTTTGCAT+AGG + chr6_1:11764579-11764598 Msa0875290:intron 15.0%
!!! TTTGAATTCTTTTCTTTTAA+AGG - chr6_1:11764899-11764918 None:intergenic 15.0%
!! TAAACTTATATAAGCTTATA+AGG - chr6_1:11765260-11765279 None:intergenic 15.0%
!!! AATTATTGATAATATGAGAT+GGG + chr6_1:11766214-11766233 Msa0875290:CDS 15.0%
!!! ATATGAGTAAATTGTCATTT+TGG + chr6_1:11764644-11764663 Msa0875290:intron 20.0%
!! CAAAACTTCAAAAATATCTA+CGG + chr6_1:11764707-11764726 Msa0875290:intron 20.0%
!! ATAGAAGAATTAAGTTCAAT+TGG - chr6_1:11764922-11764941 None:intergenic 20.0%
!! TGAATTCATAACTAAGATTA+TGG + chr6_1:11765160-11765179 Msa0875290:intron 20.0%
!! CTTAGTCATTATAGATTTAT+AGG + chr6_1:11765311-11765330 Msa0875290:intron 20.0%
!! CTTTCTTTCACAAATATAAA+TGG - chr6_1:11765912-11765931 None:intergenic 20.0%
!!! AATGGAACAATTGATAATAA+TGG + chr6_1:11766125-11766144 Msa0875290:CDS 20.0%
!!! ATAATGGTTTTATGTTGTTT+AGG + chr6_1:11766141-11766160 Msa0875290:CDS 20.0%
!!! TAATGGTTTTATGTTGTTTA+GGG + chr6_1:11766142-11766161 Msa0875290:CDS 20.0%
!! ATAATCCTTATAATAAGAGA+AGG + chr6_1:11766168-11766187 Msa0875290:CDS 20.0%
!! TAATCCTTATAATAAGAGAA+GGG + chr6_1:11766169-11766188 Msa0875290:CDS 20.0%
!!! CAATTATTGATAATATGAGA+TGG + chr6_1:11766213-11766232 Msa0875290:CDS 20.0%
!!! ATATGAGTAAATTGTCATTT+TGG + chr6_1:11764644-11764663 Msa0875290:intron 20.0%
!! CAAAACTTCAAAAATATCTA+CGG + chr6_1:11764707-11764726 Msa0875290:intron 20.0%
!! ATAGAAGAATTAAGTTCAAT+TGG - chr6_1:11764922-11764941 None:intergenic 20.0%
!! TGAATTCATAACTAAGATTA+TGG + chr6_1:11765160-11765179 Msa0875290:intron 20.0%
!! CTTAGTCATTATAGATTTAT+AGG + chr6_1:11765311-11765330 Msa0875290:intron 20.0%
!! CTTTCTTTCACAAATATAAA+TGG - chr6_1:11765912-11765931 None:intergenic 20.0%
!!! AATGGAACAATTGATAATAA+TGG + chr6_1:11766125-11766144 Msa0875290:CDS 20.0%
!!! ATAATGGTTTTATGTTGTTT+AGG + chr6_1:11766141-11766160 Msa0875290:CDS 20.0%
!!! TAATGGTTTTATGTTGTTTA+GGG + chr6_1:11766142-11766161 Msa0875290:CDS 20.0%
!! ATAATCCTTATAATAAGAGA+AGG + chr6_1:11766168-11766187 Msa0875290:CDS 20.0%
!! TAATCCTTATAATAAGAGAA+GGG + chr6_1:11766169-11766188 Msa0875290:CDS 20.0%
!!! CAATTATTGATAATATGAGA+TGG + chr6_1:11766213-11766232 Msa0875290:CDS 20.0%
! AATATGAAGATACATGTTGT+TGG + chr6_1:11764368-11764387 Msa0875290:CDS 25.0%
!! GTCTTCTGTTAGTAATTTTA+AGG + chr6_1:11764734-11764753 Msa0875290:intron 25.0%
! ATAAGCTTATAAGGACTTAT+AGG - chr6_1:11765251-11765270 None:intergenic 25.0%
!! AAATGTTATTTGACATTGCA+AGG - chr6_1:11765470-11765489 None:intergenic 25.0%
!! TGAAACTTTTGTGATTTTGT+AGG + chr6_1:11765538-11765557 Msa0875290:intron 25.0%
!! TCTTTTAGATTGAATGGTTT+TGG - chr6_1:11765636-11765655 None:intergenic 25.0%
!! TACAAGTCTTTTAGATTGAA+TGG - chr6_1:11765642-11765661 None:intergenic 25.0%
! GAGTATGAATCTTGAAAATT+TGG - chr6_1:11765665-11765684 None:intergenic 25.0%
!!! TTTTTTCTTAGGAATTTTGG+TGG - chr6_1:11765735-11765754 None:intergenic 25.0%
!!! CCTTTTTTTCTTAGGAATTT+TGG - chr6_1:11765738-11765757 None:intergenic 25.0%
! CCAAAATTCCTAAGAAAAAA+AGG + chr6_1:11765735-11765754 Msa0875290:CDS 25.0%
! AATTCCTAAGAAAAAAAGGA+TGG + chr6_1:11765739-11765758 Msa0875290:CDS 25.0%
!! TTTTTCTTGAGATAGGAAAA+TGG - chr6_1:11765854-11765873 None:intergenic 25.0%
!!! AGAGAAAAAGTATTGATATG+TGG + chr6_1:11766086-11766105 Msa0875290:CDS 25.0%
!!! AAAAGTATTGATATGTGGAA+TGG + chr6_1:11766091-11766110 Msa0875290:CDS 25.0%
!!! TAGTCTTGAGATATGATTTT+AGG + chr6_1:11766384-11766403 Msa0875290:CDS 25.0%
! ATGGGAGTAAGAATAAATTA+AGG + chr6_1:11766430-11766449 Msa0875290:exon 25.0%
! TGGGAGTAAGAATAAATTAA+GGG + chr6_1:11766431-11766450 Msa0875290:exon 25.0%
! GTAAGAATAAATTAAGGGTT+TGG + chr6_1:11766436-11766455 Msa0875290:exon 25.0%
! AACATACCCTTAATGTAATT+TGG - chr6_1:11766473-11766492 None:intergenic 25.0%
! AATATGAAGATACATGTTGT+TGG + chr6_1:11764368-11764387 Msa0875290:CDS 25.0%
!! GTCTTCTGTTAGTAATTTTA+AGG + chr6_1:11764734-11764753 Msa0875290:intron 25.0%
! ATAAGCTTATAAGGACTTAT+AGG - chr6_1:11765251-11765270 None:intergenic 25.0%
!! AAATGTTATTTGACATTGCA+AGG - chr6_1:11765470-11765489 None:intergenic 25.0%
!! TGAAACTTTTGTGATTTTGT+AGG + chr6_1:11765538-11765557 Msa0875290:intron 25.0%
!! TCTTTTAGATTGAATGGTTT+TGG - chr6_1:11765636-11765655 None:intergenic 25.0%
!! TACAAGTCTTTTAGATTGAA+TGG - chr6_1:11765642-11765661 None:intergenic 25.0%
! GAGTATGAATCTTGAAAATT+TGG - chr6_1:11765665-11765684 None:intergenic 25.0%
!!! TTTTTTCTTAGGAATTTTGG+TGG - chr6_1:11765735-11765754 None:intergenic 25.0%
!!! CCTTTTTTTCTTAGGAATTT+TGG - chr6_1:11765738-11765757 None:intergenic 25.0%
! CCAAAATTCCTAAGAAAAAA+AGG + chr6_1:11765735-11765754 Msa0875290:CDS 25.0%
! AATTCCTAAGAAAAAAAGGA+TGG + chr6_1:11765739-11765758 Msa0875290:CDS 25.0%
!! TTTTTCTTGAGATAGGAAAA+TGG - chr6_1:11765854-11765873 None:intergenic 25.0%
!!! AGAGAAAAAGTATTGATATG+TGG + chr6_1:11766086-11766105 Msa0875290:CDS 25.0%
!!! AAAAGTATTGATATGTGGAA+TGG + chr6_1:11766091-11766110 Msa0875290:CDS 25.0%
!!! TAGTCTTGAGATATGATTTT+AGG + chr6_1:11766384-11766403 Msa0875290:CDS 25.0%
! ATGGGAGTAAGAATAAATTA+AGG + chr6_1:11766430-11766449 Msa0875290:exon 25.0%
! TGGGAGTAAGAATAAATTAA+GGG + chr6_1:11766431-11766450 Msa0875290:exon 25.0%
! GTAAGAATAAATTAAGGGTT+TGG + chr6_1:11766436-11766455 Msa0875290:exon 25.0%
! AACATACCCTTAATGTAATT+TGG - chr6_1:11766473-11766492 None:intergenic 25.0%
! GATTTTCTGTACATAGACAA+AGG - chr6_1:11764274-11764293 None:intergenic 30.0%
ATTACTAGATAGCCTGAATA+TGG - chr6_1:11764331-11764350 None:intergenic 30.0%
ATGAACAAACTACAAGCATT+AGG + chr6_1:11764470-11764489 Msa0875290:CDS 30.0%
TGAACAAACTACAAGCATTA+GGG + chr6_1:11764471-11764490 Msa0875290:CDS 30.0%
TCTGATTACATAGTATCTGT+TGG - chr6_1:11764533-11764552 None:intergenic 30.0%
TTTGCATAGGTTCATTAGTT+TGG + chr6_1:11764592-11764611 Msa0875290:intron 30.0%
! ATGTCTTTTCCTAGTCAATT+TGG - chr6_1:11764793-11764812 None:intergenic 30.0%
ACTAGGAAAAGACATATTCA+TGG + chr6_1:11764798-11764817 Msa0875290:intron 30.0%
TCTGTATGGAACTATAATTG+AGG + chr6_1:11765034-11765053 Msa0875290:intron 30.0%
TAATTGAGGTCATGCTTATA+AGG + chr6_1:11765048-11765067 Msa0875290:intron 30.0%
GTTCCATATAAATCCAAACT+AGG - chr6_1:11765186-11765205 None:intergenic 30.0%
! TTTTACGTGCATGTTTGAAT+TGG + chr6_1:11765338-11765357 Msa0875290:intron 30.0%
GTATACAAATGTTCAAGAGA+AGG + chr6_1:11765564-11765583 Msa0875290:CDS 30.0%
AAGATTCATACTCATCAAAG+TGG + chr6_1:11765672-11765691 Msa0875290:CDS 30.0%
!!! CTTTCCATCCTTTTTTTCTT+AGG - chr6_1:11765746-11765765 None:intergenic 30.0%
!!! GGTGAATTTTTTCTTGAGAT+AGG - chr6_1:11765861-11765880 None:intergenic 30.0%
AAGAAAAAATTCACCACCTT+TGG + chr6_1:11765866-11765885 Msa0875290:CDS 30.0%
TATGACACTAGAGCAAAAAT+GGG + chr6_1:11765977-11765996 Msa0875290:CDS 30.0%
AAGAGATTTATTCATGTGGA+AGG + chr6_1:11766000-11766019 Msa0875290:CDS 30.0%
CTAACCCTTCTCTTATTATA+AGG - chr6_1:11766176-11766195 None:intergenic 30.0%
AGGTAACATGTCAAAATGAA+TGG + chr6_1:11766300-11766319 Msa0875290:CDS 30.0%
CATGTCAAAATGAATGGAAT+AGG + chr6_1:11766306-11766325 Msa0875290:CDS 30.0%
CAAAATGAATGGAATAGGTT+TGG + chr6_1:11766311-11766330 Msa0875290:CDS 30.0%
!! TAGGTTTGGTTGTTATGTTT+TGG + chr6_1:11766325-11766344 Msa0875290:CDS 30.0%
! TGGTTGAAAGTTTTTGTCTT+AGG + chr6_1:11766345-11766364 Msa0875290:CDS 30.0%
! AAGTTTTTGTCTTAGGACAT+TGG + chr6_1:11766352-11766371 Msa0875290:CDS 30.0%
TCATAAGATCAAGTGCAAAT+GGG + chr6_1:11766412-11766431 Msa0875290:CDS 30.0%
TCACTCTCCAAATTACATTA+AGG + chr6_1:11766463-11766482 Msa0875290:three_prime_UTR 30.0%
CACTCTCCAAATTACATTAA+GGG + chr6_1:11766464-11766483 Msa0875290:three_prime_UTR 30.0%
! TTGATTATTGTCGCGTTTTT+AGG + chr6_1:11766508-11766527 Msa0875290:three_prime_UTR 30.0%
! AATTTTGCGAAGCAAGAAAT+CGG + chr6_1:11766544-11766563 Msa0875290:three_prime_UTR 30.0%
! GATTTTCTGTACATAGACAA+AGG - chr6_1:11764274-11764293 None:intergenic 30.0%
ATTACTAGATAGCCTGAATA+TGG - chr6_1:11764331-11764350 None:intergenic 30.0%
ATGAACAAACTACAAGCATT+AGG + chr6_1:11764470-11764489 Msa0875290:CDS 30.0%
TGAACAAACTACAAGCATTA+GGG + chr6_1:11764471-11764490 Msa0875290:CDS 30.0%
TCTGATTACATAGTATCTGT+TGG - chr6_1:11764533-11764552 None:intergenic 30.0%
TTTGCATAGGTTCATTAGTT+TGG + chr6_1:11764592-11764611 Msa0875290:intron 30.0%
! ATGTCTTTTCCTAGTCAATT+TGG - chr6_1:11764793-11764812 None:intergenic 30.0%
ACTAGGAAAAGACATATTCA+TGG + chr6_1:11764798-11764817 Msa0875290:intron 30.0%
TCTGTATGGAACTATAATTG+AGG + chr6_1:11765034-11765053 Msa0875290:intron 30.0%
TAATTGAGGTCATGCTTATA+AGG + chr6_1:11765048-11765067 Msa0875290:intron 30.0%
GTTCCATATAAATCCAAACT+AGG - chr6_1:11765186-11765205 None:intergenic 30.0%
! TTTTACGTGCATGTTTGAAT+TGG + chr6_1:11765338-11765357 Msa0875290:intron 30.0%
GTATACAAATGTTCAAGAGA+AGG + chr6_1:11765564-11765583 Msa0875290:CDS 30.0%
AAGATTCATACTCATCAAAG+TGG + chr6_1:11765672-11765691 Msa0875290:CDS 30.0%
!!! CTTTCCATCCTTTTTTTCTT+AGG - chr6_1:11765746-11765765 None:intergenic 30.0%
!!! GGTGAATTTTTTCTTGAGAT+AGG - chr6_1:11765861-11765880 None:intergenic 30.0%
AAGAAAAAATTCACCACCTT+TGG + chr6_1:11765866-11765885 Msa0875290:CDS 30.0%
TATGACACTAGAGCAAAAAT+GGG + chr6_1:11765977-11765996 Msa0875290:CDS 30.0%
AAGAGATTTATTCATGTGGA+AGG + chr6_1:11766000-11766019 Msa0875290:CDS 30.0%
CTAACCCTTCTCTTATTATA+AGG - chr6_1:11766176-11766195 None:intergenic 30.0%
AGGTAACATGTCAAAATGAA+TGG + chr6_1:11766300-11766319 Msa0875290:CDS 30.0%
CATGTCAAAATGAATGGAAT+AGG + chr6_1:11766306-11766325 Msa0875290:CDS 30.0%
CAAAATGAATGGAATAGGTT+TGG + chr6_1:11766311-11766330 Msa0875290:CDS 30.0%
!! TAGGTTTGGTTGTTATGTTT+TGG + chr6_1:11766325-11766344 Msa0875290:CDS 30.0%
! TGGTTGAAAGTTTTTGTCTT+AGG + chr6_1:11766345-11766364 Msa0875290:CDS 30.0%
! AAGTTTTTGTCTTAGGACAT+TGG + chr6_1:11766352-11766371 Msa0875290:CDS 30.0%
TCATAAGATCAAGTGCAAAT+GGG + chr6_1:11766412-11766431 Msa0875290:CDS 30.0%
TCACTCTCCAAATTACATTA+AGG + chr6_1:11766463-11766482 Msa0875290:three_prime_UTR 30.0%
CACTCTCCAAATTACATTAA+GGG + chr6_1:11766464-11766483 Msa0875290:three_prime_UTR 30.0%
! TTGATTATTGTCGCGTTTTT+AGG + chr6_1:11766508-11766527 Msa0875290:three_prime_UTR 30.0%
! AATTTTGCGAAGCAAGAAAT+CGG + chr6_1:11766544-11766563 Msa0875290:three_prime_UTR 30.0%
CAGAAAATCTCCAAGTAGTT+TGG + chr6_1:11764285-11764304 Msa0875290:CDS 35.0%
AACAATTTGTCTTGAGGGAA+AGG - chr6_1:11764427-11764446 None:intergenic 35.0%
CTGAGAACAATTTGTCTTGA+GGG - chr6_1:11764432-11764451 None:intergenic 35.0%
ACTGAGAACAATTTGTCTTG+AGG - chr6_1:11764433-11764452 None:intergenic 35.0%
!! GTAGTTTGTTCATTCTCTGA+AGG - chr6_1:11764463-11764482 None:intergenic 35.0%
AAACTACAAGCATTAGGGTT+TGG + chr6_1:11764476-11764495 Msa0875290:CDS 35.0%
TACTATGTAATCAGAGCCAA+AGG + chr6_1:11764538-11764557 Msa0875290:CDS 35.0%
TTAAGGACCAAACTGAGAAA+CGG + chr6_1:11764751-11764770 Msa0875290:intron 35.0%
GTTTGAAGACCAAATTGACT+AGG + chr6_1:11764781-11764800 Msa0875290:intron 35.0%
TTCCAACAATATGTGCCATA+AGG + chr6_1:11765001-11765020 Msa0875290:intron 35.0%
!! ATGTGCCATAAGGTCTTATT+TGG + chr6_1:11765011-11765030 Msa0875290:intron 35.0%
ACAGACCAAATAAGACCTTA+TGG - chr6_1:11765019-11765038 None:intergenic 35.0%
!! AAGGTCTTATTTGGTCTGTA+TGG + chr6_1:11765020-11765039 Msa0875290:intron 35.0%
ACTAAGATTATGGCCTAGTT+TGG + chr6_1:11765170-11765189 Msa0875290:intron 35.0%
TGGCCTAGTTTGGATTTATA+TGG + chr6_1:11765180-11765199 Msa0875290:intron 35.0%
TGATTTCGTCAAACTCATTG+TGG + chr6_1:11765426-11765445 Msa0875290:intron 35.0%
AGTATGTGTGAATTCACATG+AGG - chr6_1:11765508-11765527 None:intergenic 35.0%
! TTGGACTTTTGTCATTCAAG+AGG - chr6_1:11765617-11765636 None:intergenic 35.0%
ATTCATACTCATCAAAGTGG+TGG + chr6_1:11765675-11765694 Msa0875290:CDS 35.0%
GCAAAATCAATTACACCAGA+TGG + chr6_1:11765705-11765724 Msa0875290:CDS 35.0%
!! AATTTTGGTGGAATTCCATC+TGG - chr6_1:11765723-11765742 None:intergenic 35.0%
TGCAAACTAAATGAAGCTCT+AGG + chr6_1:11765792-11765811 Msa0875290:CDS 35.0%
GAGATAGGAAAATGGAAACT+TGG - chr6_1:11765846-11765865 None:intergenic 35.0%
! TACCATTTTCCTACAACCAA+AGG - chr6_1:11765885-11765904 None:intergenic 35.0%
GTATGACACTAGAGCAAAAA+TGG + chr6_1:11765976-11765995 Msa0875290:CDS 35.0%
TGGGAAGAGATTTATTCATG+TGG + chr6_1:11765996-11766015 Msa0875290:CDS 35.0%
! AATAAGAGAAGGGTTAGTGT+TGG + chr6_1:11766179-11766198 Msa0875290:CDS 35.0%
TTTATGGAAATGGGAGAGAA+AGG + chr6_1:11766258-11766277 Msa0875290:CDS 35.0%
TTATGGAAATGGGAGAGAAA+GGG + chr6_1:11766259-11766278 Msa0875290:CDS 35.0%
! TTTTGTCTTAGGACATTGGA+TGG + chr6_1:11766356-11766375 Msa0875290:CDS 35.0%
TTTGTCTTAGGACATTGGAT+GGG + chr6_1:11766357-11766376 Msa0875290:CDS 35.0%
CTCATAAGATCAAGTGCAAA+TGG + chr6_1:11766411-11766430 Msa0875290:CDS 35.0%
CAGAAAATCTCCAAGTAGTT+TGG + chr6_1:11764285-11764304 Msa0875290:CDS 35.0%
AACAATTTGTCTTGAGGGAA+AGG - chr6_1:11764427-11764446 None:intergenic 35.0%
CTGAGAACAATTTGTCTTGA+GGG - chr6_1:11764432-11764451 None:intergenic 35.0%
ACTGAGAACAATTTGTCTTG+AGG - chr6_1:11764433-11764452 None:intergenic 35.0%
!! GTAGTTTGTTCATTCTCTGA+AGG - chr6_1:11764463-11764482 None:intergenic 35.0%
AAACTACAAGCATTAGGGTT+TGG + chr6_1:11764476-11764495 Msa0875290:CDS 35.0%
TACTATGTAATCAGAGCCAA+AGG + chr6_1:11764538-11764557 Msa0875290:CDS 35.0%
TTAAGGACCAAACTGAGAAA+CGG + chr6_1:11764751-11764770 Msa0875290:intron 35.0%
GTTTGAAGACCAAATTGACT+AGG + chr6_1:11764781-11764800 Msa0875290:intron 35.0%
TTCCAACAATATGTGCCATA+AGG + chr6_1:11765001-11765020 Msa0875290:intron 35.0%
!! ATGTGCCATAAGGTCTTATT+TGG + chr6_1:11765011-11765030 Msa0875290:intron 35.0%
ACAGACCAAATAAGACCTTA+TGG - chr6_1:11765019-11765038 None:intergenic 35.0%
!! AAGGTCTTATTTGGTCTGTA+TGG + chr6_1:11765020-11765039 Msa0875290:intron 35.0%
ACTAAGATTATGGCCTAGTT+TGG + chr6_1:11765170-11765189 Msa0875290:intron 35.0%
TGGCCTAGTTTGGATTTATA+TGG + chr6_1:11765180-11765199 Msa0875290:intron 35.0%
TGATTTCGTCAAACTCATTG+TGG + chr6_1:11765426-11765445 Msa0875290:intron 35.0%
AGTATGTGTGAATTCACATG+AGG - chr6_1:11765508-11765527 None:intergenic 35.0%
! TTGGACTTTTGTCATTCAAG+AGG - chr6_1:11765617-11765636 None:intergenic 35.0%
ATTCATACTCATCAAAGTGG+TGG + chr6_1:11765675-11765694 Msa0875290:CDS 35.0%
GCAAAATCAATTACACCAGA+TGG + chr6_1:11765705-11765724 Msa0875290:CDS 35.0%
!! AATTTTGGTGGAATTCCATC+TGG - chr6_1:11765723-11765742 None:intergenic 35.0%
TGCAAACTAAATGAAGCTCT+AGG + chr6_1:11765792-11765811 Msa0875290:CDS 35.0%
GAGATAGGAAAATGGAAACT+TGG - chr6_1:11765846-11765865 None:intergenic 35.0%
! TACCATTTTCCTACAACCAA+AGG - chr6_1:11765885-11765904 None:intergenic 35.0%
GTATGACACTAGAGCAAAAA+TGG + chr6_1:11765976-11765995 Msa0875290:CDS 35.0%
TGGGAAGAGATTTATTCATG+TGG + chr6_1:11765996-11766015 Msa0875290:CDS 35.0%
! AATAAGAGAAGGGTTAGTGT+TGG + chr6_1:11766179-11766198 Msa0875290:CDS 35.0%
TTTATGGAAATGGGAGAGAA+AGG + chr6_1:11766258-11766277 Msa0875290:CDS 35.0%
TTATGGAAATGGGAGAGAAA+GGG + chr6_1:11766259-11766278 Msa0875290:CDS 35.0%
! TTTTGTCTTAGGACATTGGA+TGG + chr6_1:11766356-11766375 Msa0875290:CDS 35.0%
TTTGTCTTAGGACATTGGAT+GGG + chr6_1:11766357-11766376 Msa0875290:CDS 35.0%
CTCATAAGATCAAGTGCAAA+TGG + chr6_1:11766411-11766430 Msa0875290:CDS 35.0%
TTGGAAGACAGAGAATGATC+AGG - chr6_1:11764514-11764533 None:intergenic 40.0%
TAATAGCCCTCGCACATTTA+CGG - chr6_1:11764671-11764690 None:intergenic 40.0%
ATGTCTTCCGTTTCTCAGTT+TGG - chr6_1:11764761-11764780 None:intergenic 40.0%
GACCTTATGGCACATATTGT+TGG - chr6_1:11765006-11765025 None:intergenic 40.0%
GCGATGTACAATCGTGATTA+AGG + chr6_1:11765360-11765379 Msa0875290:intron 40.0%
GGATGGAAAGTGAGAATTTC+AGG + chr6_1:11765756-11765775 Msa0875290:CDS 40.0%
! CTTGGAAGCTTTTCTCTTAG+AGG - chr6_1:11765828-11765847 None:intergenic 40.0%
AATTCACCACCTTTGGTTGT+AGG + chr6_1:11765873-11765892 Msa0875290:CDS 40.0%
! CATTTTCCTACAACCAAAGG+TGG - chr6_1:11765882-11765901 None:intergenic 40.0%
CACCTTTGGTTGTAGGAAAA+TGG + chr6_1:11765880-11765899 Msa0875290:CDS 40.0%
GGAATGGAAGCTACAAAGAA+TGG + chr6_1:11766107-11766126 Msa0875290:CDS 40.0%
!! ATGAGATGGGTTGAAGAACA+AGG + chr6_1:11766227-11766246 Msa0875290:CDS 40.0%
GTGGTTGGGTTTATGGAAAT+GGG + chr6_1:11766249-11766268 Msa0875290:CDS 40.0%
TTGCTTCGCAAAATTCGCAT+TGG - chr6_1:11766539-11766558 None:intergenic 40.0%
TTGGAAGACAGAGAATGATC+AGG - chr6_1:11764514-11764533 None:intergenic 40.0%
TAATAGCCCTCGCACATTTA+CGG - chr6_1:11764671-11764690 None:intergenic 40.0%
ATGTCTTCCGTTTCTCAGTT+TGG - chr6_1:11764761-11764780 None:intergenic 40.0%
GACCTTATGGCACATATTGT+TGG - chr6_1:11765006-11765025 None:intergenic 40.0%
GCGATGTACAATCGTGATTA+AGG + chr6_1:11765360-11765379 Msa0875290:intron 40.0%
GGATGGAAAGTGAGAATTTC+AGG + chr6_1:11765756-11765775 Msa0875290:CDS 40.0%
! CTTGGAAGCTTTTCTCTTAG+AGG - chr6_1:11765828-11765847 None:intergenic 40.0%
AATTCACCACCTTTGGTTGT+AGG + chr6_1:11765873-11765892 Msa0875290:CDS 40.0%
! CATTTTCCTACAACCAAAGG+TGG - chr6_1:11765882-11765901 None:intergenic 40.0%
CACCTTTGGTTGTAGGAAAA+TGG + chr6_1:11765880-11765899 Msa0875290:CDS 40.0%
GGAATGGAAGCTACAAAGAA+TGG + chr6_1:11766107-11766126 Msa0875290:CDS 40.0%
!! ATGAGATGGGTTGAAGAACA+AGG + chr6_1:11766227-11766246 Msa0875290:CDS 40.0%
GTGGTTGGGTTTATGGAAAT+GGG + chr6_1:11766249-11766268 Msa0875290:CDS 40.0%
TTGCTTCGCAAAATTCGCAT+TGG - chr6_1:11766539-11766558 None:intergenic 40.0%
GGTGGTATCTCCAAACTACT+TGG - chr6_1:11764298-11764317 None:intergenic 45.0%
GAATATGGTGCATCTGATGG+TGG - chr6_1:11764316-11764335 None:intergenic 45.0%
CCTGAATATGGTGCATCTGA+TGG - chr6_1:11764319-11764338 None:intergenic 45.0%
CCATCAGATGCACCATATTC+AGG + chr6_1:11764316-11764335 Msa0875290:CDS 45.0%
GTTGTTGGCGAATATGTCGT+CGG + chr6_1:11764383-11764402 Msa0875290:CDS 45.0%
GACAGAGAATGATCAGGAAC+AGG - chr6_1:11764508-11764527 None:intergenic 45.0%
ATACCCTTTGTGTCTGCCTT+TGG - chr6_1:11764557-11764576 None:intergenic 45.0%
! TTTTGGTCCGTAAATGTGCG+AGG + chr6_1:11764661-11764680 Msa0875290:intron 45.0%
TTTGGTCCGTAAATGTGCGA+GGG + chr6_1:11764662-11764681 Msa0875290:intron 45.0%
!! AGATGGGTTGAAGAACAAGG+TGG + chr6_1:11766230-11766249 Msa0875290:CDS 45.0%
GGTTGAAGAACAAGGTGGTT+GGG + chr6_1:11766235-11766254 Msa0875290:CDS 45.0%
GAACAAGGTGGTTGGGTTTA+TGG + chr6_1:11766242-11766261 Msa0875290:CDS 45.0%
GGTGGTTGGGTTTATGGAAA+TGG + chr6_1:11766248-11766267 Msa0875290:CDS 45.0%
GGTTGTGACAGTGAAAGAAG+AGG + chr6_1:11766280-11766299 Msa0875290:CDS 45.0%
AAGCAAGAAATCGGAGAGGT+GGG + chr6_1:11766553-11766572 Msa0875290:three_prime_UTR 45.0%
GGTGGTATCTCCAAACTACT+TGG - chr6_1:11764298-11764317 None:intergenic 45.0%
GAATATGGTGCATCTGATGG+TGG - chr6_1:11764316-11764335 None:intergenic 45.0%
CCTGAATATGGTGCATCTGA+TGG - chr6_1:11764319-11764338 None:intergenic 45.0%
CCATCAGATGCACCATATTC+AGG + chr6_1:11764316-11764335 Msa0875290:CDS 45.0%
GTTGTTGGCGAATATGTCGT+CGG + chr6_1:11764383-11764402 Msa0875290:CDS 45.0%
GACAGAGAATGATCAGGAAC+AGG - chr6_1:11764508-11764527 None:intergenic 45.0%
ATACCCTTTGTGTCTGCCTT+TGG - chr6_1:11764557-11764576 None:intergenic 45.0%
! TTTTGGTCCGTAAATGTGCG+AGG + chr6_1:11764661-11764680 Msa0875290:intron 45.0%
TTTGGTCCGTAAATGTGCGA+GGG + chr6_1:11764662-11764681 Msa0875290:intron 45.0%
!! AGATGGGTTGAAGAACAAGG+TGG + chr6_1:11766230-11766249 Msa0875290:CDS 45.0%
GGTTGAAGAACAAGGTGGTT+GGG + chr6_1:11766235-11766254 Msa0875290:CDS 45.0%
GAACAAGGTGGTTGGGTTTA+TGG + chr6_1:11766242-11766261 Msa0875290:CDS 45.0%
GGTGGTTGGGTTTATGGAAA+TGG + chr6_1:11766248-11766267 Msa0875290:CDS 45.0%
GGTTGTGACAGTGAAAGAAG+AGG + chr6_1:11766280-11766299 Msa0875290:CDS 45.0%
AAGCAAGAAATCGGAGAGGT+GGG + chr6_1:11766553-11766572 Msa0875290:three_prime_UTR 45.0%
AGAGCCAAAGGCAGACACAA+AGG + chr6_1:11764550-11764569 Msa0875290:CDS 50.0%
GAGCCAAAGGCAGACACAAA+GGG + chr6_1:11764551-11764570 Msa0875290:CDS 50.0%
GGGTTGAAGAACAAGGTGGT+TGG + chr6_1:11766234-11766253 Msa0875290:CDS 50.0%
TGCGAAGCAAGAAATCGGAG+AGG + chr6_1:11766549-11766568 Msa0875290:three_prime_UTR 50.0%
GAAGCAAGAAATCGGAGAGG+TGG + chr6_1:11766552-11766571 Msa0875290:three_prime_UTR 50.0%
AGAGCCAAAGGCAGACACAA+AGG + chr6_1:11764550-11764569 Msa0875290:CDS 50.0%
GAGCCAAAGGCAGACACAAA+GGG + chr6_1:11764551-11764570 Msa0875290:CDS 50.0%
GGGTTGAAGAACAAGGTGGT+TGG + chr6_1:11766234-11766253 Msa0875290:CDS 50.0%
TGCGAAGCAAGAAATCGGAG+AGG + chr6_1:11766549-11766568 Msa0875290:three_prime_UTR 50.0%
GAAGCAAGAAATCGGAGAGG+TGG + chr6_1:11766552-11766571 Msa0875290:three_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 11764244 11766584 11764244 ID=Msa0875290;Name=Msa0875290
chr6_1 mRNA 11764244 11766584 11764244 ID=Msa0875290-mRNA-1;Parent=Msa0875290;Name=Msa0875290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|145|402
chr6_1 exon 11764244 11764572 11764244 ID=Msa0875290-mRNA-1:exon:3564;Parent=Msa0875290-mRNA-1
chr6_1 exon 11765560 11766584 11765560 ID=Msa0875290-mRNA-1:exon:3565;Parent=Msa0875290-mRNA-1
chr6_1 CDS 11764244 11764572 11764244 ID=Msa0875290-mRNA-1:cds;Parent=Msa0875290-mRNA-1
chr6_1 CDS 11765560 11766439 11765560 ID=Msa0875290-mRNA-1:cds;Parent=Msa0875290-mRNA-1
chr6_1 three_prime_UTR 11766440 11766584 11766440 ID=Msa0875290-mRNA-1:three_prime_utr;Parent=Msa0875290-mRNA-1
Gene Sequence

>Msa0875290

AGAAGAAAAAAAATGTATGTGACTAGACCTTTGTCTATGTACAGAAAATCTCCAAGTAGTTTGGAGATACCACCATCAGATGCACCATATTCAGGCTATCTAGTAATCACAGATGAAGAAGCAGAATATGAAGATACATGTTGTTGGCGAATATGTCGTCGGAAGAATGTGAAGAAGCTTCCTTTCCCTCAAGACAAATTGTTCTCAGTTTTTCATCCTTCAGAGAATGAACAAACTACAAGCATTAGGGTTTGGTTTCTTCCTGTTCCTGATCATTCTCTGTCTTCCAACAGATACTATGTAATCAGAGCCAAAGGCAGACACAAAGGGAAAGTATACAAATGTTCAAGAGAAGGTGACATAGTGAGTTGTTGCTTCAACAACCTCTTGAATGACAAAAGTCCAAAACCATTCAATCTAAAAGACTTGTACCAAATTTTCAAGATTCATACTCATCAAAGTGGTGGTTTCTTTGCAAAATCAATTACACCAGATGGAATTCCACCAAAATTCCTAAGAAAAAAAGGATGGAAAGTGAGAATTTCAGGTTCATATAGATCATGCAAACTAAATGAAGCTCTAGGTGTTGATGTTCCTCTAAGAGAAAAGCTTCCAAGTTTCCATTTTCCTATCTCAAGAAAAAATTCACCACCTTTGGTTGTAGGAAAATGGTATATTCCATTTATATTTGTGAAAGAAAGTGCAAGAAAAGTCAAACAACAAATGAAAAAGTCAATGTTTTATAGTATGACACTAGAGCAAAAATGGGAAGAGATTTATTCATGTGGAAGGAATGAACATGAAAATGAGAATCAAAATGAAGATGATGTTGTTATTGTGAATGTATATGTTGAAAGAGAAAAAGTATTGATATGTGGAATGGAAGCTACAAAGAATGGAACAATTGATAATAATGGTTTTATGTTGTTTAGGGTTTATAATCCTTATAATAAGAGAAGGGTTAGTGTTGGATTGAGTTCAGCAATTATTGATAATATGAGATGGGTTGAAGAACAAGGTGGTTGGGTTTATGGAAATGGGAGAGAAAGGGTTGTGACAGTGAAAGAAGAGGTAACATGTCAAAATGAATGGAATAGGTTTGGTTGTTATGTTTTGGTTGAAAGTTTTTGTCTTAGGACATTGGATGGGAAGTTAGTCTTGAGATATGATTTTAGGCATACTCATAAGATCAAGTGCAAATGGGAGTAA

Protein sequence

>Msa0875290

RRKKMYVTRPLSMYRKSPSSLEIPPSDAPYSGYLVITDEEAEYEDTCCWRICRRKNVKKLPFPQDKLFSVFHPSENEQTTSIRVWFLPVPDHSLSSNRYYVIRAKGRHKGKVYKCSREGDIVSCCFNNLLNDKSPKPFNLKDLYQIFKIHTHQSGGFFAKSITPDGIPPKFLRKKGWKVRISGSYRSCKLNEALGVDVPLREKLPSFHFPISRKNSPPLVVGKWYIPFIFVKESARKVKQQMKKSMFYSMTLEQKWEEIYSCGRNEHENENQNEDDVVIVNVYVEREKVLICGMEATKNGTIDNNGFMLFRVYNPYNKRRVSVGLSSAIIDNMRWVEEQGGWVYGNGRERVVTVKEEVTCQNEWNRFGCYVLVESFCLRTLDGKLVLRYDFRHTHKIKCKWE*