Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192200 | XP_003593617.1 | 91.608 | 143 | 10 | 1 | 1 | 141 | 1 | 143 | 2.79e-75 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192200 | sp|Q38741|SBP1_ANTMA | 58.865 | 141 | 48 | 3 | 1 | 141 | 1 | 131 | 2.46e-49 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192200 | G7ISD5 | 91.608 | 143 | 10 | 1 | 1 | 141 | 1 | 143 | 1.33e-75 | 230 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0192200 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118400 | Msa0192200 | 0.814030 | 1.896006e-51 | -8.615850e-47 |
| Msa0161680 | Msa0192200 | 0.800708 | 1.269864e-48 | -8.615850e-47 |
| Msa0192200 | Msa0192320 | 0.946909 | 1.873172e-105 | -8.615850e-47 |
| Msa0192200 | Msa0301280 | 0.942955 | 2.862015e-102 | -8.615850e-47 |
| Msa0192200 | Msa0313080 | 0.891066 | 5.576370e-74 | -8.615850e-47 |
| Msa0192200 | Msa0334350 | 0.817245 | 3.643962e-52 | -8.615850e-47 |
| Msa0192200 | Msa0371570 | 0.815433 | 9.268180e-52 | -8.615850e-47 |
| Msa0192200 | Msa0419990 | 0.803412 | 3.528999e-49 | -8.615850e-47 |
| Msa0192200 | Msa0425010 | 0.800453 | 1.431228e-48 | -8.615850e-47 |
| Msa0192200 | Msa0436500 | 0.802418 | 5.664018e-49 | -8.615850e-47 |
| Msa0192200 | Msa0465930 | 0.812563 | 3.980044e-51 | -8.615850e-47 |
| Msa0192200 | Msa0465970 | 0.819209 | 1.309640e-52 | -8.615850e-47 |
| Msa0192200 | Msa0517330 | 0.818118 | 2.315821e-52 | -8.615850e-47 |
| Msa0192200 | Msa0626190 | 0.810042 | 1.402771e-50 | -8.615850e-47 |
| Msa0192200 | Msa0695410 | 0.820843 | 5.536266e-53 | -8.615850e-47 |
| Msa0192200 | Msa0701770 | 0.803206 | 3.893964e-49 | -8.615850e-47 |
| Msa0192200 | Msa0773610 | 0.804204 | 2.416788e-49 | -8.615850e-47 |
| Msa0192200 | Msa0792510 | 0.801390 | 9.208514e-49 | -8.615850e-47 |
| Msa0192200 | Msa1009000 | 0.817400 | 3.362437e-52 | -8.615850e-47 |
| Msa0192200 | Msa1023400 | 0.819317 | 1.237435e-52 | -8.615850e-47 |
| Msa0192200 | Msa1098560 | 0.826578 | 2.511982e-54 | -8.615850e-47 |
| Msa0192200 | Msa1159360 | 0.806123 | 9.584583e-50 | -8.615850e-47 |
| Msa0192200 | Msa1172590 | 0.804103 | 2.536315e-49 | -8.615850e-47 |
| Msa0192200 | Msa1199560 | 0.809347 | 1.979363e-50 | -8.615850e-47 |
| Msa0192200 | Msa1221200 | -0.807682 | 4.486538e-50 | -8.615850e-47 |
| Msa0192200 | Msa1222970 | 0.802554 | 5.310483e-49 | -8.615850e-47 |
| Msa0192200 | Msa1264020 | 0.802517 | 5.403090e-49 | -8.615850e-47 |
| Msa0192200 | Msa1271280 | 0.817582 | 3.059461e-52 | -8.615850e-47 |
| Msa0192200 | Msa1271300 | 0.804147 | 2.484090e-49 | -8.615850e-47 |
| Msa0192200 | Msa1342430 | 0.823026 | 1.728331e-53 | -8.615850e-47 |
| Msa0192200 | Msa1358870 | -0.815309 | 9.877120e-52 | -8.615850e-47 |
| Msa0192200 | Msa1411070 | 0.808567 | 2.906992e-50 | -8.615850e-47 |
| Msa0192200 | Msa1427760 | 0.803814 | 2.912676e-49 | -8.615850e-47 |
| Msa0192200 | Msa1460890 | 0.809616 | 1.732906e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192200 | MtrunA17_Chr2g0282521 | 91.608 | 143 | 10 | 1 | 1 | 141 | 1 | 143 | 2.56e-79 | 230 |
| Msa0192200 | MtrunA17_Chr4g0046991 | 64.085 | 142 | 48 | 2 | 1 | 140 | 11 | 151 | 9.95e-52 | 161 |
| Msa0192200 | MtrunA17_Chr8g0360361 | 66.667 | 81 | 27 | 0 | 59 | 139 | 62 | 142 | 1.53e-36 | 123 |
| Msa0192200 | MtrunA17_Chr7g0231911 | 70.238 | 84 | 25 | 0 | 54 | 137 | 141 | 224 | 1.20e-35 | 125 |
| Msa0192200 | MtrunA17_Chr8g0334671 | 67.470 | 83 | 27 | 0 | 54 | 136 | 179 | 261 | 3.88e-35 | 124 |
| Msa0192200 | MtrunA17_Chr5g0420051 | 61.053 | 95 | 37 | 0 | 46 | 140 | 165 | 259 | 5.62e-35 | 125 |
| Msa0192200 | MtrunA17_Chr1g0162871 | 56.410 | 117 | 40 | 3 | 23 | 136 | 70 | 178 | 1.10e-34 | 127 |
| Msa0192200 | MtrunA17_Chr7g0258471 | 67.059 | 85 | 24 | 1 | 55 | 135 | 131 | 215 | 1.55e-33 | 121 |
| Msa0192200 | MtrunA17_Chr2g0302791 | 69.333 | 75 | 23 | 0 | 62 | 136 | 139 | 213 | 2.65e-33 | 123 |
| Msa0192200 | MtrunA17_Chr4g0061651 | 70.886 | 79 | 23 | 0 | 57 | 135 | 118 | 196 | 7.93e-33 | 120 |
| Msa0192200 | MtrunA17_Chr7g0270541 | 57.692 | 104 | 34 | 1 | 33 | 136 | 126 | 219 | 1.08e-32 | 121 |
| Msa0192200 | MtrunA17_Chr3g0122411 | 56.842 | 95 | 40 | 1 | 46 | 139 | 148 | 242 | 1.23e-32 | 119 |
| Msa0192200 | MtrunA17_Chr7g0224821 | 65.432 | 81 | 28 | 0 | 56 | 136 | 71 | 151 | 2.07e-32 | 117 |
| Msa0192200 | MtrunA17_Chr2g0308321 | 67.500 | 80 | 26 | 0 | 62 | 141 | 171 | 250 | 3.95e-32 | 119 |
| Msa0192200 | MtrunA17_Chr1g0194121 | 61.957 | 92 | 34 | 1 | 49 | 139 | 133 | 224 | 1.09e-31 | 118 |
| Msa0192200 | MtrunA17_Chr3g0132091 | 42.568 | 148 | 70 | 2 | 7 | 139 | 3 | 150 | 8.13e-31 | 113 |
| Msa0192200 | MtrunA17_Chr8g0386271 | 61.905 | 84 | 32 | 0 | 56 | 139 | 93 | 176 | 8.58e-29 | 108 |
| Msa0192200 | MtrunA17_Chr8g0377421 | 42.857 | 133 | 58 | 5 | 8 | 135 | 86 | 205 | 2.11e-25 | 97.8 |
| Msa0192200 | MtrunA17_Chr8g0377401 | 57.895 | 76 | 32 | 0 | 59 | 134 | 159 | 234 | 3.13e-25 | 96.7 |
| Msa0192200 | MtrunA17_Chr2g0317041 | 55.000 | 60 | 27 | 0 | 49 | 108 | 86 | 145 | 3.59e-19 | 78.6 |
| Msa0192200 | MtrunA17_Chr2g0286661 | 50.000 | 74 | 37 | 0 | 62 | 135 | 103 | 176 | 7.73e-19 | 81.6 |
| Msa0192200 | MtrunA17_Chr1g0175031 | 60.714 | 56 | 22 | 0 | 53 | 108 | 65 | 120 | 9.02e-17 | 71.6 |
| Msa0192200 | MtrunA17_Chr8g0377431 | 48.214 | 56 | 29 | 0 | 60 | 115 | 149 | 204 | 6.69e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192200 | AT2G33810.1 | 70.000 | 90 | 24 | 1 | 53 | 139 | 42 | 131 | 2.50e-39 | 129 |
| Msa0192200 | AT1G53160.2 | 62.626 | 99 | 37 | 0 | 41 | 139 | 33 | 131 | 2.74e-38 | 128 |
| Msa0192200 | AT1G53160.1 | 62.626 | 99 | 37 | 0 | 41 | 139 | 33 | 131 | 2.74e-38 | 128 |
| Msa0192200 | AT1G53160.3 | 62.626 | 99 | 37 | 0 | 41 | 139 | 33 | 131 | 2.87e-38 | 128 |
| Msa0192200 | AT1G20980.1 | 68.539 | 89 | 26 | 1 | 49 | 137 | 109 | 195 | 7.14e-36 | 130 |
| Msa0192200 | AT1G76580.1 | 68.750 | 80 | 25 | 0 | 60 | 139 | 112 | 191 | 1.89e-34 | 126 |
| Msa0192200 | AT3G60030.1 | 63.830 | 94 | 29 | 2 | 50 | 139 | 112 | 204 | 4.39e-34 | 125 |
| Msa0192200 | AT1G02065.1 | 68.293 | 82 | 26 | 0 | 54 | 135 | 180 | 261 | 4.56e-34 | 121 |
| Msa0192200 | AT1G76580.3 | 68.750 | 80 | 25 | 0 | 60 | 139 | 112 | 191 | 8.65e-34 | 124 |
| Msa0192200 | AT3G15270.1 | 65.823 | 79 | 25 | 1 | 59 | 135 | 58 | 136 | 1.03e-33 | 116 |
| Msa0192200 | AT1G76580.2 | 68.750 | 80 | 25 | 0 | 60 | 139 | 112 | 191 | 1.09e-33 | 124 |
| Msa0192200 | AT2G47070.1 | 60.825 | 97 | 34 | 1 | 43 | 139 | 91 | 183 | 1.33e-33 | 124 |
| Msa0192200 | AT1G69170.1 | 70.886 | 79 | 23 | 0 | 57 | 135 | 119 | 197 | 4.73e-33 | 120 |
| Msa0192200 | AT1G27370.6 | 55.670 | 97 | 41 | 1 | 41 | 135 | 153 | 249 | 1.81e-31 | 115 |
| Msa0192200 | AT1G27370.1 | 55.670 | 97 | 41 | 1 | 41 | 135 | 153 | 249 | 4.11e-31 | 115 |
| Msa0192200 | AT1G27370.5 | 55.670 | 97 | 41 | 1 | 41 | 135 | 153 | 249 | 4.11e-31 | 115 |
| Msa0192200 | AT1G27370.3 | 55.670 | 97 | 41 | 1 | 41 | 135 | 153 | 249 | 4.11e-31 | 115 |
| Msa0192200 | AT1G27370.2 | 55.670 | 97 | 41 | 1 | 41 | 135 | 153 | 249 | 4.11e-31 | 115 |
| Msa0192200 | AT1G27370.4 | 55.670 | 97 | 41 | 1 | 41 | 135 | 153 | 249 | 4.11e-31 | 115 |
| Msa0192200 | AT1G27370.7 | 55.670 | 97 | 41 | 1 | 41 | 135 | 153 | 249 | 4.11e-31 | 115 |
| Msa0192200 | AT1G27360.2 | 56.701 | 97 | 41 | 1 | 40 | 135 | 152 | 248 | 1.91e-30 | 113 |
| Msa0192200 | AT1G27360.1 | 56.701 | 97 | 41 | 1 | 40 | 135 | 152 | 248 | 1.91e-30 | 113 |
| Msa0192200 | AT1G27360.3 | 56.701 | 97 | 41 | 1 | 40 | 135 | 152 | 248 | 1.91e-30 | 113 |
| Msa0192200 | AT1G27360.4 | 56.701 | 97 | 41 | 1 | 40 | 135 | 152 | 248 | 1.91e-30 | 113 |
| Msa0192200 | AT3G57920.1 | 56.731 | 104 | 40 | 1 | 32 | 135 | 34 | 132 | 2.12e-30 | 112 |
| Msa0192200 | AT5G43270.3 | 64.103 | 78 | 28 | 0 | 59 | 136 | 166 | 243 | 3.48e-30 | 112 |
| Msa0192200 | AT5G43270.1 | 64.103 | 78 | 28 | 0 | 59 | 136 | 166 | 243 | 3.48e-30 | 112 |
| Msa0192200 | AT5G43270.2 | 64.103 | 78 | 28 | 0 | 59 | 136 | 166 | 243 | 3.48e-30 | 112 |
| Msa0192200 | AT2G42200.1 | 63.636 | 77 | 28 | 0 | 60 | 136 | 72 | 148 | 4.42e-30 | 112 |
| Msa0192200 | AT5G50570.1 | 56.667 | 90 | 39 | 0 | 51 | 140 | 90 | 179 | 1.63e-29 | 110 |
| Msa0192200 | AT5G50570.2 | 56.667 | 90 | 39 | 0 | 51 | 140 | 90 | 179 | 1.63e-29 | 110 |
| Msa0192200 | AT5G50670.1 | 56.667 | 90 | 39 | 0 | 51 | 140 | 90 | 179 | 1.63e-29 | 110 |
| Msa0192200 | AT5G50670.2 | 56.667 | 90 | 39 | 0 | 51 | 140 | 90 | 179 | 1.63e-29 | 110 |
| Msa0192200 | AT1G02065.2 | 61.538 | 65 | 23 | 1 | 54 | 116 | 180 | 244 | 7.11e-21 | 85.1 |
| Msa0192200 | AT5G18830.2 | 49.383 | 81 | 41 | 0 | 55 | 135 | 131 | 211 | 3.35e-20 | 85.9 |
| Msa0192200 | AT5G18830.1 | 49.383 | 81 | 41 | 0 | 55 | 135 | 131 | 211 | 3.88e-20 | 85.9 |
| Msa0192200 | AT5G18830.3 | 49.383 | 81 | 41 | 0 | 55 | 135 | 131 | 211 | 4.29e-20 | 85.5 |
| Msa0192200 | AT2G47070.2 | 67.925 | 53 | 17 | 0 | 87 | 139 | 2 | 54 | 3.86e-19 | 82.8 |
Find 71 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGATTTACCTTAACTTA+TGG | 0.220696 | 2_1:+7959513 | Msa0192200:exon |
| ACAAAAGGGTGCTCATTTAT+TGG | 0.224690 | 2_1:-7959372 | None:intergenic |
| CACAAACCTTATGGCGCTTA+TGG | 0.248219 | 2_1:-7959762 | None:intergenic |
| ATATCCCTCAAATATATTAT+TGG | 0.277920 | 2_1:-7961916 | None:intergenic |
| AATGGTATTCACAAACCTTA+TGG | 0.308780 | 2_1:-7959771 | None:intergenic |
| GAAGAGGAAGATGTGAGTTA+TGG | 0.319891 | 2_1:+7959607 | Msa0192200:CDS |
| AAGCCATGGTAATAAATTAA+TGG | 0.327177 | 2_1:-7961888 | None:intergenic |
| AAGAGGAAGATGTGAGTTAT+GGG | 0.331465 | 2_1:+7959608 | Msa0192200:CDS |
| ATGACTTGAAAAGGAGTTGT+AGG | 0.355530 | 2_1:+7961579 | Msa0192200:CDS |
| TTAACTTATGGATGGAAGTT+GGG | 0.358056 | 2_1:+7959525 | Msa0192200:exon |
| GGTTTGTGAATACCATTCTA+AGG | 0.368542 | 2_1:+7959777 | Msa0192200:CDS |
| TTGTCAACCTGCTACATTGC+TGG | 0.372075 | 2_1:-7959840 | None:intergenic |
| CTTAACTTATGGATGGAAGT+TGG | 0.386744 | 2_1:+7959524 | Msa0192200:exon |
| ATTCAAATTGATGTTATTTG+TGG | 0.399031 | 2_1:+7961731 | Msa0192200:three_prime_UTR |
| CTCACCAATAATATATTTGA+GGG | 0.417935 | 2_1:+7961912 | Msa0192200:three_prime_UTR |
| CAGAATTTGATGACTTGAAA+AGG | 0.424158 | 2_1:+7961570 | Msa0192200:CDS |
| CAACTTCCATCCATAAGTTA+AGG | 0.431263 | 2_1:-7959523 | None:intergenic |
| AAGAGGGTGTGGACCACAAA+AGG | 0.442762 | 2_1:-7959387 | None:intergenic |
| TCTCACCAATAATATATTTG+AGG | 0.442874 | 2_1:+7961911 | Msa0192200:three_prime_UTR |
| GGGATGATGGGAAGAAGAAA+AGG | 0.444953 | 2_1:+7959629 | Msa0192200:CDS |
| AAGGAGTTGTAGGAGGCGTT+TGG | 0.456087 | 2_1:+7961589 | Msa0192200:CDS |
| TGAAGTAGAAGTAGAAGAAG+AGG | 0.463169 | 2_1:+7959591 | Msa0192200:CDS |
| ATGGATGGAAGTTGGGGTGA+GGG | 0.465253 | 2_1:+7959532 | Msa0192200:CDS |
| TTTATTGGTTGCCAACTTGA+GGG | 0.465401 | 2_1:-7959357 | None:intergenic |
| AAAAGGGTAAATAAATAGAA+TGG | 0.469519 | 2_1:-7959413 | None:intergenic |
| GATGTGAGTTATGGGGATGA+TGG | 0.475010 | 2_1:+7959616 | Msa0192200:CDS |
| AACAGGAAAGGGTCAAAAGC+TGG | 0.479614 | 2_1:+7959673 | Msa0192200:CDS |
| CTTCTATACCAAGGTTGTTG+TGG | 0.480026 | 2_1:+7959448 | Msa0192200:five_prime_UTR |
| AGTTGTAGGAGGCGTTTGGC+TGG | 0.487448 | 2_1:+7961593 | Msa0192200:CDS |
| ATTTATTGGTTGCCAACTTG+AGG | 0.488594 | 2_1:-7959358 | None:intergenic |
| TAACATCAATTTGAATATGA+AGG | 0.494767 | 2_1:-7961724 | None:intergenic |
| TATGGATGGAAGTTGGGGTG+AGG | 0.500828 | 2_1:+7959531 | Msa0192200:exon |
| TGACTGATCATCTTTACAAC+AGG | 0.501584 | 2_1:+7959656 | Msa0192200:CDS |
| GTTATTAAAGAATGAAAAGA+GGG | 0.503992 | 2_1:-7959488 | None:intergenic |
| CAACTTGAGGGTAACAGTGA+TGG | 0.504518 | 2_1:-7959345 | None:intergenic |
| TGAAAAGAGGGTGAAGTCAA+GGG | 0.507320 | 2_1:-7959476 | None:intergenic |
| ATGAAAAGAGGGTGAAGTCA+AGG | 0.509681 | 2_1:-7959477 | None:intergenic |
| ATCATCTTTACAACAGGAAA+GGG | 0.510630 | 2_1:+7959662 | Msa0192200:CDS |
| AAAATTGAGCAGCAATAAAG+AGG | 0.524174 | 2_1:-7961788 | None:intergenic |
| TTGAAGCTCTGAAATGAGTA+CGG | 0.530837 | 2_1:-7959806 | None:intergenic |
| GCAGTACCATAAGCGCCATA+AGG | 0.534642 | 2_1:+7959756 | Msa0192200:CDS |
| AGAGGAAGATGTGAGTTATG+GGG | 0.544242 | 2_1:+7959609 | Msa0192200:CDS |
| GATTTACCTTAACTTATGGA+TGG | 0.546093 | 2_1:+7959517 | Msa0192200:exon |
| ATGTGAGTTATGGGGATGAT+GGG | 0.550503 | 2_1:+7959617 | Msa0192200:CDS |
| GGATGATGGGAAGAAGAAAA+GGG | 0.556520 | 2_1:+7959630 | Msa0192200:CDS |
| GGTAATAAATTAATGGTACA+AGG | 0.560402 | 2_1:-7961881 | None:intergenic |
| AGTTATTAAAGAATGAAAAG+AGG | 0.561099 | 2_1:-7959489 | None:intergenic |
| TAACTTATGGATGGAAGTTG+GGG | 0.568515 | 2_1:+7959526 | Msa0192200:exon |
| GATCATCTTTACAACAGGAA+AGG | 0.569404 | 2_1:+7959661 | Msa0192200:CDS |
| GAAAAGAGGGTGAAGTCAAG+GGG | 0.570578 | 2_1:-7959475 | None:intergenic |
| GTACGGAATGAGCCTTAGAA+TGG | 0.572289 | 2_1:-7959789 | None:intergenic |
| GTACCATTAATTTATTACCA+TGG | 0.575456 | 2_1:+7961885 | Msa0192200:three_prime_UTR |
| CAGTTATCAACTTGACAAGA+AGG | 0.576877 | 2_1:-7959709 | None:intergenic |
| ATTTGAATATGAAGGACTCA+AGG | 0.580481 | 2_1:-7961716 | None:intergenic |
| CACATACAATACAATTGCAA+AGG | 0.586026 | 2_1:-7961846 | None:intergenic |
| AACTTGAGGGTAACAGTGAT+GGG | 0.587158 | 2_1:-7959344 | None:intergenic |
| ATAGAGCATTAGCTGAGGGC+CGG | 0.588404 | 2_1:-7959310 | None:intergenic |
| ACGTCTGAATATCACTGAGA+AGG | 0.591085 | 2_1:+7961641 | Msa0192200:exon |
| TCATTTCAGAGCTTCAACAA+AGG | 0.599380 | 2_1:+7959812 | Msa0192200:CDS |
| AGAGGGTGTGGACCACAAAA+GGG | 0.600294 | 2_1:-7959386 | None:intergenic |
| GGGGAAGACCACAACAACCT+TGG | 0.600711 | 2_1:-7959456 | None:intergenic |
| CATCACTGTTACCCTCAAGT+TGG | 0.601011 | 2_1:+7959346 | Msa0192200:five_prime_UTR |
| AAATTGAGCAGCAATAAAGA+GGG | 0.632566 | 2_1:-7961787 | None:intergenic |
| ACTTGAAAAGGAGTTGTAGG+AGG | 0.645868 | 2_1:+7961582 | Msa0192200:CDS |
| CTATATAGAGCATTAGCTGA+GGG | 0.646069 | 2_1:-7959314 | None:intergenic |
| TATTATTGGTGAGAAAGCCA+TGG | 0.646118 | 2_1:-7961902 | None:intergenic |
| TGATGGGAAGAAGAAAAGGG+TGG | 0.662923 | 2_1:+7959633 | Msa0192200:CDS |
| AGGAAAGGGTCAAAAGCTGG+AGG | 0.666819 | 2_1:+7959676 | Msa0192200:CDS |
| ACTATATAGAGCATTAGCTG+AGG | 0.670283 | 2_1:-7959315 | None:intergenic |
| CATAAGTTAAGGTAAATCTG+AGG | 0.674591 | 2_1:-7959512 | None:intergenic |
| GTTTGGCTGGACATAACGAG+AGG | 0.681910 | 2_1:+7961606 | Msa0192200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTCTATCAAATA+AGG | + | chr2_1:7960080-7960099 | Msa0192200:intron | 10.0% |
| !! | ATATTAATATTTACTAGAAA+TGG | - | chr2_1:7960138-7960157 | None:intergenic | 10.0% |
| !!! | TTATTTTTTAATATTCCAAT+AGG | + | chr2_1:7960262-7960281 | Msa0192200:intron | 10.0% |
| !!! | AAAATGATAGATTTTTATAA+GGG | - | chr2_1:7960364-7960383 | None:intergenic | 10.0% |
| !!! | TAAAATGATAGATTTTTATA+AGG | - | chr2_1:7960365-7960384 | None:intergenic | 10.0% |
| !!! | AAAAAAAAACTTGTTTTATA+TGG | - | chr2_1:7960431-7960450 | None:intergenic | 10.0% |
| !!! | AAACAAGTTTTTTTTTAATA+TGG | + | chr2_1:7960435-7960454 | Msa0192200:intron | 10.0% |
| !!! | ATTTTGTAAAAATAAGATTA+AGG | + | chr2_1:7960516-7960535 | Msa0192200:intron | 10.0% |
| !!! | TTTTGTAAAAATAAGATTAA+GGG | + | chr2_1:7960517-7960536 | Msa0192200:intron | 10.0% |
| !!! | ATTTCATCATTATAATTTTT+TGG | + | chr2_1:7960603-7960622 | Msa0192200:intron | 10.0% |
| !!! | TTTTTTATTGATAAATACCT+TGG | + | chr2_1:7959998-7960017 | Msa0192200:intron | 15.0% |
| !!! | TCATTTTACTAAAAATAGTA+AGG | + | chr2_1:7960377-7960396 | Msa0192200:intron | 15.0% |
| !!! | CATTTTACTAAAAATAGTAA+GGG | + | chr2_1:7960378-7960397 | Msa0192200:intron | 15.0% |
| !!! | TTTATATGGACTTTTAAAAA+AGG | - | chr2_1:7960417-7960436 | None:intergenic | 15.0% |
| !! | ATTAATTAGTTGTAAATCAT+GGG | - | chr2_1:7961499-7961518 | None:intergenic | 15.0% |
| !! | AATTAATTAGTTGTAAATCA+TGG | - | chr2_1:7961500-7961519 | None:intergenic | 15.0% |
| !! | TAATTATTAACTTATAGCTT+TGG | + | chr2_1:7961515-7961534 | Msa0192200:intron | 15.0% |
| !! | ATAAATAGAATGGAAAAAGA+GGG | - | chr2_1:7959406-7959425 | None:intergenic | 20.0% |
| !! | AATAAATAGAATGGAAAAAG+AGG | - | chr2_1:7959407-7959426 | None:intergenic | 20.0% |
| !! | AAAAGGGTAAATAAATAGAA+TGG | - | chr2_1:7959416-7959435 | None:intergenic | 20.0% |
| !! | GAAGTAGAAAAAACATAAAA+GGG | - | chr2_1:7959432-7959451 | None:intergenic | 20.0% |
| !! | AGAAGTAGAAAAAACATAAA+AGG | - | chr2_1:7959433-7959452 | None:intergenic | 20.0% |
| !! | GTTATTAAAGAATGAAAAGA+GGG | - | chr2_1:7959491-7959510 | None:intergenic | 20.0% |
| !! | AGTTATTAAAGAATGAAAAG+AGG | - | chr2_1:7959492-7959511 | None:intergenic | 20.0% |
| !! | AAGATATTCAAGGAAAAAAA+AGG | - | chr2_1:7959878-7959897 | None:intergenic | 20.0% |
| !! | TACTAATACTAAGATATTCA+AGG | - | chr2_1:7959888-7959907 | None:intergenic | 20.0% |
| !! | AAATATTGAGGTTCAATATA+AGG | - | chr2_1:7959920-7959939 | None:intergenic | 20.0% |
| !! | TTTAAGCTTCTTAACAAATA+AGG | + | chr2_1:7960316-7960335 | Msa0192200:intron | 20.0% |
| !! | TTAAGCTTCTTAACAAATAA+GGG | + | chr2_1:7960317-7960336 | Msa0192200:intron | 20.0% |
| !! | TCAAAAAAAATGTTCAAATG+TGG | + | chr2_1:7960461-7960480 | Msa0192200:intron | 20.0% |
| !!! | TTTTACTATAAAAGAGGTAA+TGG | - | chr2_1:7960488-7960507 | None:intergenic | 20.0% |
| !!! | ACCTCTTTTATAGTAAAATA+TGG | + | chr2_1:7960490-7960509 | Msa0192200:intron | 20.0% |
| !!! | ACCATATTTTACTATAAAAG+AGG | - | chr2_1:7960494-7960513 | None:intergenic | 20.0% |
| !! | ATAAGATTAAGGGTAAAATA+CGG | + | chr2_1:7960527-7960546 | Msa0192200:intron | 20.0% |
| !! | AAAAATAAAATAAAGGGAAG+TGG | + | chr2_1:7960560-7960579 | Msa0192200:intron | 20.0% |
| !! | TGAACATCAATAAATATTCA+GGG | - | chr2_1:7960938-7960957 | None:intergenic | 20.0% |
| !! | ATGAACATCAATAAATATTC+AGG | - | chr2_1:7960939-7960958 | None:intergenic | 20.0% |
| !!! | CATGAAGTATCTTTAAAAAA+TGG | - | chr2_1:7961243-7961262 | None:intergenic | 20.0% |
| !!! | CATTTTTTAAAGATACTTCA+TGG | + | chr2_1:7961241-7961260 | Msa0192200:intron | 20.0% |
| !!! | TTTTTTTTTGAAGAAGCATA+AGG | - | chr2_1:7961389-7961408 | None:intergenic | 20.0% |
| !! | TAACATCAATTTGAATATGA+AGG | - | chr2_1:7961727-7961746 | None:intergenic | 20.0% |
| !!! | ATTCAAATTGATGTTATTTG+TGG | + | chr2_1:7961731-7961750 | Msa0192200:three_prime_UTR | 20.0% |
| !! | ATATCCCTCAAATATATTAT+TGG | - | chr2_1:7961919-7961938 | None:intergenic | 20.0% |
| !!! | TTTTTTCTACTTCTATACCA+AGG | + | chr2_1:7959439-7959458 | Msa0192200:five_prime_UTR | 25.0% |
| ! | GGAAAAAAAAGGTGAAATTA+GGG | - | chr2_1:7959867-7959886 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAGGTGAAATT+AGG | - | chr2_1:7959868-7959887 | None:intergenic | 25.0% |
| !!! | CACTTTTGAACATTTTTTAG+AGG | - | chr2_1:7960107-7960126 | None:intergenic | 25.0% |
| ! | TTTGTGCATCATTATAAACT+GGG | + | chr2_1:7960172-7960191 | Msa0192200:intron | 25.0% |
| ! | ATGCTAACAATTGTATGTTA+AGG | + | chr2_1:7960197-7960216 | Msa0192200:intron | 25.0% |
| ! | GAAAATTGTAATCAACCTAT+TGG | - | chr2_1:7960280-7960299 | None:intergenic | 25.0% |
| !!! | TAGGTTGATTACAATTTTCA+TGG | + | chr2_1:7960281-7960300 | Msa0192200:intron | 25.0% |
| ! | TTCTTAACAAATAAGGGTTA+TGG | + | chr2_1:7960323-7960342 | Msa0192200:intron | 25.0% |
| !!! | TCATATTAGATGCACTTTTT+TGG | + | chr2_1:7960629-7960648 | Msa0192200:intron | 25.0% |
| !! | ACCAACAAATTTTTCCAATT+GGG | - | chr2_1:7960893-7960912 | None:intergenic | 25.0% |
| !! | TACCAACAAATTTTTCCAAT+TGG | - | chr2_1:7960894-7960913 | None:intergenic | 25.0% |
| ! | GAACATCAATAAATATTCAG+GGG | - | chr2_1:7960937-7960956 | None:intergenic | 25.0% |
| ! | ATATATGATCTTGAAGTTGA+AGG | - | chr2_1:7961083-7961102 | None:intergenic | 25.0% |
| !! | CTTTAGTCATCACTTAATTT+TGG | + | chr2_1:7961165-7961184 | Msa0192200:intron | 25.0% |
| !!! | TTTTTAAAGATACTTCATGG+AGG | + | chr2_1:7961244-7961263 | Msa0192200:intron | 25.0% |
| ! | GACAGGAAGAAAAAAAATTA+AGG | + | chr2_1:7961270-7961289 | Msa0192200:intron | 25.0% |
| !! | AGAACATTGTGTATATGTTT+TGG | - | chr2_1:7961444-7961463 | None:intergenic | 25.0% |
| ! | ACACAATGTTCTTCATATAT+AGG | + | chr2_1:7961452-7961471 | Msa0192200:intron | 25.0% |
| !!! | TAACTTATAGCTTTGGAATA+TGG | + | chr2_1:7961522-7961541 | Msa0192200:intron | 25.0% |
| !! | TTGGAATATGGTTTTTCTAT+AGG | + | chr2_1:7961534-7961553 | Msa0192200:intron | 25.0% |
| ! | GGTAATAAATTAATGGTACA+AGG | - | chr2_1:7961884-7961903 | None:intergenic | 25.0% |
| ! | GTACCATTAATTTATTACCA+TGG | + | chr2_1:7961885-7961904 | Msa0192200:three_prime_UTR | 25.0% |
| ! | AAGCCATGGTAATAAATTAA+TGG | - | chr2_1:7961891-7961910 | None:intergenic | 25.0% |
| ! | TCTCACCAATAATATATTTG+AGG | + | chr2_1:7961911-7961930 | Msa0192200:three_prime_UTR | 25.0% |
| ! | CTCACCAATAATATATTTGA+GGG | + | chr2_1:7961912-7961931 | Msa0192200:three_prime_UTR | 25.0% |
| CATAAGTTAAGGTAAATCTG+AGG | - | chr2_1:7959515-7959534 | None:intergenic | 30.0% | |
| CTCAGATTTACCTTAACTTA+TGG | + | chr2_1:7959513-7959532 | Msa0192200:exon | 30.0% | |
| GATTTACCTTAACTTATGGA+TGG | + | chr2_1:7959517-7959536 | Msa0192200:exon | 30.0% | |
| TTAACTTATGGATGGAAGTT+GGG | + | chr2_1:7959525-7959544 | Msa0192200:exon | 30.0% | |
| ATCATCTTTACAACAGGAAA+GGG | + | chr2_1:7959662-7959681 | Msa0192200:CDS | 30.0% | |
| AATGGTATTCACAAACCTTA+TGG | - | chr2_1:7959774-7959793 | None:intergenic | 30.0% | |
| CTTAGTTATTAGTAAGACCA+AGG | - | chr2_1:7960018-7960037 | None:intergenic | 30.0% | |
| CTTTGTGCATCATTATAAAC+TGG | + | chr2_1:7960171-7960190 | Msa0192200:intron | 30.0% | |
| TTTAAAAAAGGAGCCAAATG+TGG | - | chr2_1:7960405-7960424 | None:intergenic | 30.0% | |
| !!! | TTAGATGCACTTTTTTGGAT+AGG | + | chr2_1:7960634-7960653 | Msa0192200:intron | 30.0% |
| TTTGTAGGAGTGAAAATCAA+AGG | - | chr2_1:7960779-7960798 | None:intergenic | 30.0% | |
| !! | TTTGATTTTCACTCCTACAA+AGG | + | chr2_1:7960778-7960797 | Msa0192200:intron | 30.0% |
| AAGTTTAGCACTATATAGCT+AGG | - | chr2_1:7960814-7960833 | None:intergenic | 30.0% | |
| !! | TTGGAAAAATTTGTTGGTAC+AGG | + | chr2_1:7960895-7960914 | Msa0192200:intron | 30.0% |
| AAATGCTATTCGTCTATAGT+TGG | - | chr2_1:7961142-7961161 | None:intergenic | 30.0% | |
| ! | CAAATTTGAGACTTAAACGT+TGG | + | chr2_1:7961336-7961355 | Msa0192200:intron | 30.0% |
| ! | GTTTTTCTATAGGTTTCATG+AGG | + | chr2_1:7961544-7961563 | Msa0192200:intron | 30.0% |
| ! | CAGAATTTGATGACTTGAAA+AGG | + | chr2_1:7961570-7961589 | Msa0192200:CDS | 30.0% |
| ATTTGAATATGAAGGACTCA+AGG | - | chr2_1:7961719-7961738 | None:intergenic | 30.0% | |
| AAATTGAGCAGCAATAAAGA+GGG | - | chr2_1:7961790-7961809 | None:intergenic | 30.0% | |
| AAAATTGAGCAGCAATAAAG+AGG | - | chr2_1:7961791-7961810 | None:intergenic | 30.0% | |
| CACATACAATACAATTGCAA+AGG | - | chr2_1:7961849-7961868 | None:intergenic | 30.0% | |
| ! | CTATATAGAGCATTAGCTGA+GGG | - | chr2_1:7959317-7959336 | None:intergenic | 35.0% |
| ! | ACTATATAGAGCATTAGCTG+AGG | - | chr2_1:7959318-7959337 | None:intergenic | 35.0% |
| ! | TTTATTGGTTGCCAACTTGA+GGG | - | chr2_1:7959360-7959379 | None:intergenic | 35.0% |
| ! | ATTTATTGGTTGCCAACTTG+AGG | - | chr2_1:7959361-7959380 | None:intergenic | 35.0% |
| !! | ACAAAAGGGTGCTCATTTAT+TGG | - | chr2_1:7959375-7959394 | None:intergenic | 35.0% |
| ! | AATAAATGAGCACCCTTTTG+TGG | + | chr2_1:7959374-7959393 | Msa0192200:five_prime_UTR | 35.0% |
| CAACTTCCATCCATAAGTTA+AGG | - | chr2_1:7959526-7959545 | None:intergenic | 35.0% | |
| CTTAACTTATGGATGGAAGT+TGG | + | chr2_1:7959524-7959543 | Msa0192200:exon | 35.0% | |
| TAACTTATGGATGGAAGTTG+GGG | + | chr2_1:7959526-7959545 | Msa0192200:exon | 35.0% | |
| TGAAGTAGAAGTAGAAGAAG+AGG | + | chr2_1:7959591-7959610 | Msa0192200:CDS | 35.0% | |
| AAGAGGAAGATGTGAGTTAT+GGG | + | chr2_1:7959608-7959627 | Msa0192200:CDS | 35.0% | |
| TGACTGATCATCTTTACAAC+AGG | + | chr2_1:7959656-7959675 | Msa0192200:CDS | 35.0% | |
| GATCATCTTTACAACAGGAA+AGG | + | chr2_1:7959661-7959680 | Msa0192200:CDS | 35.0% | |
| CAGTTATCAACTTGACAAGA+AGG | - | chr2_1:7959712-7959731 | None:intergenic | 35.0% | |
| GGTTTGTGAATACCATTCTA+AGG | + | chr2_1:7959777-7959796 | Msa0192200:CDS | 35.0% | |
| !! | TTGAAGCTCTGAAATGAGTA+CGG | - | chr2_1:7959809-7959828 | None:intergenic | 35.0% |
| TCATTTCAGAGCTTCAACAA+AGG | + | chr2_1:7959812-7959831 | Msa0192200:CDS | 35.0% | |
| CCACTTCACATCAAATATTG+AGG | - | chr2_1:7959932-7959951 | None:intergenic | 35.0% | |
| CCTCAATATTTGATGTGAAG+TGG | + | chr2_1:7959929-7959948 | Msa0192200:intron | 35.0% | |
| AAATAGTAAGGGTCCACATT+TGG | + | chr2_1:7960389-7960408 | Msa0192200:intron | 35.0% | |
| GGAAAATGTCTGTAAGTTAC+TGG | + | chr2_1:7960655-7960674 | Msa0192200:intron | 35.0% | |
| AGGCTAACTATATCCTTTGT+AGG | - | chr2_1:7960794-7960813 | None:intergenic | 35.0% | |
| GCCCAATTGGAAAAATTTGT+TGG | + | chr2_1:7960889-7960908 | Msa0192200:intron | 35.0% | |
| AGCATGTTGGGGTAATTAAA+AGG | - | chr2_1:7961034-7961053 | None:intergenic | 35.0% | |
| ! | TATAGCAGTGTTACTGTGAT+TGG | + | chr2_1:7961102-7961121 | Msa0192200:intron | 35.0% |
| ! | TTTTGTGTTGTCAACTTCGT+GGG | - | chr2_1:7961207-7961226 | None:intergenic | 35.0% |
| GACACAGGTTAAAACTGATT+TGG | - | chr2_1:7961367-7961386 | None:intergenic | 35.0% | |
| TGGTTAATTTAGCATGCACA+AGG | - | chr2_1:7961424-7961443 | None:intergenic | 35.0% | |
| ATGACTTGAAAAGGAGTTGT+AGG | + | chr2_1:7961579-7961598 | Msa0192200:CDS | 35.0% | |
| TATTATTGGTGAGAAAGCCA+TGG | - | chr2_1:7961905-7961924 | None:intergenic | 35.0% | |
| AACTTGAGGGTAACAGTGAT+GGG | - | chr2_1:7959347-7959366 | None:intergenic | 40.0% | |
| TAGAATGGAAAAAGAGGGTG+TGG | - | chr2_1:7959401-7959420 | None:intergenic | 40.0% | |
| CTTCTATACCAAGGTTGTTG+TGG | + | chr2_1:7959448-7959467 | Msa0192200:five_prime_UTR | 40.0% | |
| TGAAAAGAGGGTGAAGTCAA+GGG | - | chr2_1:7959479-7959498 | None:intergenic | 40.0% | |
| ATGAAAAGAGGGTGAAGTCA+AGG | - | chr2_1:7959480-7959499 | None:intergenic | 40.0% | |
| GAAGAGGAAGATGTGAGTTA+TGG | + | chr2_1:7959607-7959626 | Msa0192200:CDS | 40.0% | |
| AGAGGAAGATGTGAGTTATG+GGG | + | chr2_1:7959609-7959628 | Msa0192200:CDS | 40.0% | |
| ATGTGAGTTATGGGGATGAT+GGG | + | chr2_1:7959617-7959636 | Msa0192200:CDS | 40.0% | |
| !! | GGATGATGGGAAGAAGAAAA+GGG | + | chr2_1:7959630-7959649 | Msa0192200:CDS | 40.0% |
| TATTTGATGTGAAGTGGCTG+AGG | + | chr2_1:7959935-7959954 | Msa0192200:intron | 40.0% | |
| ATTTGATGTGAAGTGGCTGA+GGG | + | chr2_1:7959936-7959955 | Msa0192200:intron | 40.0% | |
| CTATGAGTTGTCTCTTGCTA+GGG | - | chr2_1:7960041-7960060 | None:intergenic | 40.0% | |
| GATTTAGCAACTTGCCCAAT+TGG | + | chr2_1:7960876-7960895 | Msa0192200:intron | 40.0% | |
| TACATAGAACTCACACTCAC+AGG | + | chr2_1:7960973-7960992 | Msa0192200:intron | 40.0% | |
| ACATAGAACTCACACTCACA+GGG | + | chr2_1:7960974-7960993 | Msa0192200:intron | 40.0% | |
| TTTGTGTTGTCAACTTCGTG+GGG | - | chr2_1:7961206-7961225 | None:intergenic | 40.0% | |
| ! | CTTTTGTGTTGTCAACTTCG+TGG | - | chr2_1:7961208-7961227 | None:intergenic | 40.0% |
| CACGAAGTTGACAACACAAA+AGG | + | chr2_1:7961206-7961225 | Msa0192200:intron | 40.0% | |
| ! | TTGAAGAAGCATAAGGACAC+AGG | - | chr2_1:7961382-7961401 | None:intergenic | 40.0% |
| ACTTGAAAAGGAGTTGTAGG+AGG | + | chr2_1:7961582-7961601 | Msa0192200:CDS | 40.0% | |
| ! | GATATTCAGACGTGCTTTTG+CGG | - | chr2_1:7961634-7961653 | None:intergenic | 40.0% |
| ACGTCTGAATATCACTGAGA+AGG | + | chr2_1:7961641-7961660 | Msa0192200:exon | 40.0% | |
| CAACTTGAGGGTAACAGTGA+TGG | - | chr2_1:7959348-7959367 | None:intergenic | 45.0% | |
| CATCACTGTTACCCTCAAGT+TGG | + | chr2_1:7959346-7959365 | Msa0192200:five_prime_UTR | 45.0% | |
| GAAAAGAGGGTGAAGTCAAG+GGG | - | chr2_1:7959478-7959497 | None:intergenic | 45.0% | |
| GATGTGAGTTATGGGGATGA+TGG | + | chr2_1:7959616-7959635 | Msa0192200:CDS | 45.0% | |
| !! | GGGATGATGGGAAGAAGAAA+AGG | + | chr2_1:7959629-7959648 | Msa0192200:CDS | 45.0% |
| TGATGGGAAGAAGAAAAGGG+TGG | + | chr2_1:7959633-7959652 | Msa0192200:CDS | 45.0% | |
| AACAGGAAAGGGTCAAAAGC+TGG | + | chr2_1:7959673-7959692 | Msa0192200:CDS | 45.0% | |
| CACAAACCTTATGGCGCTTA+TGG | - | chr2_1:7959765-7959784 | None:intergenic | 45.0% | |
| GTACGGAATGAGCCTTAGAA+TGG | - | chr2_1:7959792-7959811 | None:intergenic | 45.0% | |
| TTGTCAACCTGCTACATTGC+TGG | - | chr2_1:7959843-7959862 | None:intergenic | 45.0% | |
| CCTATGAGTTGTCTCTTGCT+AGG | - | chr2_1:7960042-7960061 | None:intergenic | 45.0% | |
| CCTAGCAAGAGACAACTCAT+AGG | + | chr2_1:7960039-7960058 | Msa0192200:intron | 45.0% | |
| TTACCCCAACATGCTGAGAT+AGG | + | chr2_1:7961039-7961058 | Msa0192200:intron | 45.0% | |
| TACCCCAACATGCTGAGATA+GGG | + | chr2_1:7961040-7961059 | Msa0192200:intron | 45.0% | |
| TGTCCCTATCTCAGCATGTT+GGG | - | chr2_1:7961046-7961065 | None:intergenic | 45.0% | |
| ATGTCCCTATCTCAGCATGT+TGG | - | chr2_1:7961047-7961066 | None:intergenic | 45.0% | |
| ATACTTCATGGAGGCAAGAC+AGG | + | chr2_1:7961253-7961272 | Msa0192200:intron | 45.0% | |
| !!! | ATTTTGTAAAAATAAAATAA+AGG | + | chr2_1:7960553-7960572 | Msa0192200:intron | 5.0% |
| !!! | TTTTGTAAAAATAAAATAAA+GGG | + | chr2_1:7960554-7960573 | Msa0192200:intron | 5.0% |
| ! | ATAGAGCATTAGCTGAGGGC+CGG | - | chr2_1:7959313-7959332 | None:intergenic | 50.0% |
| ! | AGAGGGTGTGGACCACAAAA+GGG | - | chr2_1:7959389-7959408 | None:intergenic | 50.0% |
| ! | AAGAGGGTGTGGACCACAAA+AGG | - | chr2_1:7959390-7959409 | None:intergenic | 50.0% |
| TATGGATGGAAGTTGGGGTG+AGG | + | chr2_1:7959531-7959550 | Msa0192200:exon | 50.0% | |
| ATGGATGGAAGTTGGGGTGA+GGG | + | chr2_1:7959532-7959551 | Msa0192200:CDS | 50.0% | |
| AGGAAAGGGTCAAAAGCTGG+AGG | + | chr2_1:7959676-7959695 | Msa0192200:CDS | 50.0% | |
| GCAGTACCATAAGCGCCATA+AGG | + | chr2_1:7959756-7959775 | Msa0192200:CDS | 50.0% | |
| ! | GGTTTTGCCAGCAATGTAGC+AGG | + | chr2_1:7959833-7959852 | Msa0192200:CDS | 50.0% |
| GTCCCTATCTCAGCATGTTG+GGG | - | chr2_1:7961045-7961064 | None:intergenic | 50.0% | |
| !! | AAGGAGTTGTAGGAGGCGTT+TGG | + | chr2_1:7961589-7961608 | Msa0192200:CDS | 50.0% |
| GTTTGGCTGGACATAACGAG+AGG | + | chr2_1:7961606-7961625 | Msa0192200:CDS | 50.0% | |
| GGGGAAGACCACAACAACCT+TGG | - | chr2_1:7959459-7959478 | None:intergenic | 55.0% | |
| !! | AGTTGTAGGAGGCGTTTGGC+TGG | + | chr2_1:7961593-7961612 | Msa0192200:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 7959308 | 7961973 | 7959308 | ID=Msa0192200;Name=Msa0192200 |
| chr2_1 | mRNA | 7959308 | 7961973 | 7959308 | ID=Msa0192200-mRNA-1;Parent=Msa0192200;Name=Msa0192200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=224|1|1|1|1|1|2|315|141 |
| chr2_1 | exon | 7959308 | 7959854 | 7959308 | ID=Msa0192200-mRNA-1:exon:3665;Parent=Msa0192200-mRNA-1 |
| chr2_1 | exon | 7961556 | 7961973 | 7961556 | ID=Msa0192200-mRNA-1:exon:3666;Parent=Msa0192200-mRNA-1 |
| chr2_1 | five_prime_UTR | 7959308 | 7959531 | 7959308 | ID=Msa0192200-mRNA-1:five_prime_utr;Parent=Msa0192200-mRNA-1 |
| chr2_1 | CDS | 7959532 | 7959854 | 7959532 | ID=Msa0192200-mRNA-1:cds;Parent=Msa0192200-mRNA-1 |
| chr2_1 | CDS | 7961556 | 7961658 | 7961556 | ID=Msa0192200-mRNA-1:cds;Parent=Msa0192200-mRNA-1 |
| chr2_1 | three_prime_UTR | 7961659 | 7961973 | 7961659 | ID=Msa0192200-mRNA-1:three_prime_utr;Parent=Msa0192200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
