AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136870 MtrunA17_Chr1g0208721 88.854 323 7 2 1 323 1 294 0.0 566
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136870 AT1G15140.1 64.856 313 77 4 16 323 11 295 6.51e-136 387
Msa0136870 AT1G15140.2 69.583 240 66 3 16 250 11 248 8.42e-113 328
Msa0136870 AT1G15140.3 69.583 240 66 3 16 250 11 248 8.42e-113 328

Find 152 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCATTCTCTTCAGGTTTC+TGG 0.108389 1_3:+69112929 None:intergenic
TTCTGACCAAAATGGAATTT+TGG 0.144657 1_3:-69111479 Msa0136870:exon
GAATGTAAAATAAACAATTT+TGG 0.174190 1_3:-69111399 Msa0136870:three_prime_UTR
TATCAGGGATCTACAGTTTA+AGG 0.189359 1_3:+69111058 None:intergenic
ATTACAGATGCCAATTTATC+AGG 0.202510 1_3:+69111042 None:intergenic
CCTGAAGAGAATGGCTTATC+AGG 0.258718 1_3:-69112922 Msa0136870:intron
ACAATGCCAAAATTCCATTT+TGG 0.260562 1_3:+69111473 None:intergenic
TTGGACTAGCGAGGCCGTTT+TGG 0.270676 1_3:-69111984 Msa0136870:intron
ATCGACCCACCTGAGAAATT+TGG 0.285997 1_3:-69114506 Msa0136870:CDS
ATCTTCCACTCCAATTCTAT+TGG 0.299413 1_3:-69115167 Msa0136870:five_prime_UTR
TGTTGAGCTTAGTCCGGTTA+TGG 0.301742 1_3:-69114552 Msa0136870:CDS
CCTGATAAGCCATTCTCTTC+AGG 0.302056 1_3:+69112922 None:intergenic
TAAAGAACTTCTGACCAAAA+TGG 0.311227 1_3:-69111487 Msa0136870:exon
ACTGTAGATCCCTGATAAAT+TGG 0.328093 1_3:-69111052 Msa0136870:three_prime_UTR
TTGCCACTGGATCCGGAATT+AGG 0.330537 1_3:-69114469 Msa0136870:intron
GTGTGAGACGTGGCAAGGTC+AGG 0.331915 1_3:+69114746 None:intergenic
TTATTATTTGGTGATGAGTT+TGG 0.332009 1_3:+69115032 None:intergenic
CTTGTCTTTGCCACTGGATC+CGG 0.337767 1_3:-69114476 Msa0136870:CDS
AATATATTGACACAAACTTA+TGG 0.348143 1_3:-69111223 Msa0136870:three_prime_UTR
TCTTGATCGTCCAATAGAAT+TGG 0.360719 1_3:+69115157 None:intergenic
GTTGAGCTTAGTCCGGTTAT+GGG 0.374160 1_3:-69114551 Msa0136870:CDS
CTTAGTCCGGTTATGGGGAA+TGG 0.384177 1_3:-69114545 Msa0136870:CDS
TTATCCAACCCTTTGTCAAC+TGG 0.387952 1_3:-69112613 Msa0136870:CDS
ACTGTTCTTGTCTTTGCCAC+TGG 0.391138 1_3:-69114482 Msa0136870:CDS
ATCAGGGATCTACAGTTTAA+GGG 0.392229 1_3:+69111059 None:intergenic
TATAGGAGAGATTTAAAGAC+TGG 0.394111 1_3:-69112821 Msa0136870:intron
CTAATACAACGTGTTTAAAC+AGG 0.404090 1_3:+69111139 None:intergenic
ATTCGGTCACTTATTGAGTC+AGG 0.405073 1_3:-69112996 Msa0136870:CDS
GTGTTTGATAAAATACGCTT+TGG 0.408656 1_3:+69115085 None:intergenic
GGCTAAAGTGCGCATGGGAG+TGG 0.410046 1_3:+69114960 None:intergenic
TCAACTGGTGCTGTACTTTG+TGG 0.414186 1_3:-69112598 Msa0136870:CDS
TTTAAAGACTGGGAATCTTC+CGG 0.416173 1_3:-69112810 Msa0136870:CDS
CGTTGTGTGGGTTGAAGAAA+GGG 0.418149 1_3:-69114580 Msa0136870:CDS
GCGTTGTGTGGGTTGAAGAA+AGG 0.428547 1_3:-69114581 Msa0136870:CDS
ATGTTCCATGGAGGAGTATG+AGG 0.428751 1_3:-69111956 Msa0136870:CDS
CGTAGGATGGACATGGGAAA+GGG 0.429123 1_3:+69114932 None:intergenic
GGCAGAAACTGACCTAATTC+CGG 0.434711 1_3:+69114457 None:intergenic
TCGATCTCGGAGAGAGGAGC+TGG 0.438598 1_3:+69114818 None:intergenic
ACATCTATTCTTGTTGCTGA+TGG 0.438700 1_3:-69111530 Msa0136870:CDS
TCAAACCCATTCCCCATAAC+CGG 0.441227 1_3:+69114539 None:intergenic
CAACTGGTGCTGTACTTTGT+GGG 0.442180 1_3:-69112597 Msa0136870:CDS
GGGTGCGTATTGTCTAATTG+AGG 0.443714 1_3:+69115106 None:intergenic
TTGACGTACGGCGGCGGAAA+GGG 0.449809 1_3:+69114859 None:intergenic
GACTCAATAAGTGACCGAAT+TGG 0.449902 1_3:+69112999 None:intergenic
TGTTTGATAAAATACGCTTT+GGG 0.450385 1_3:+69115086 None:intergenic
CTTGACGTACGGCGGCGGAA+AGG 0.459299 1_3:+69114858 None:intergenic
TGACGGAGACGGTGGTTGGT+GGG 0.462815 1_3:+69114893 None:intergenic
TCTCCAGTCCAACTATCATC+TGG 0.464149 1_3:+69112759 None:intergenic
GGTGCGTATTGTCTAATTGA+GGG 0.465429 1_3:+69115107 None:intergenic
TTCTATTGGACGATCAAGAA+AGG 0.468255 1_3:-69115153 Msa0136870:five_prime_UTR
GTCGGAAGTGGCGGCAGGAG+GGG 0.468552 1_3:+69115060 None:intergenic
AGAACAGTTCCAAATTTCTC+AGG 0.470517 1_3:+69114497 None:intergenic
GCGTAGGATGGACATGGGAA+AGG 0.470876 1_3:+69114931 None:intergenic
GTGACGGAGACGGTGGTTGG+TGG 0.471139 1_3:+69114892 None:intergenic
GAGTCGGAAGTGGCGGCAGG+AGG 0.474111 1_3:+69115058 None:intergenic
ATAGCAAGAAACGACGGTTT+CGG 0.475246 1_3:+69114683 None:intergenic
TACGTCAAGACACCACCGTC+TGG 0.479107 1_3:-69114844 Msa0136870:CDS
GTAGGATGGACATGGGAAAG+GGG 0.482435 1_3:+69114933 None:intergenic
TGTGAGACGTGGCAAGGTCA+GGG 0.483409 1_3:+69114747 None:intergenic
TTAGTCCGGTTATGGGGAAT+GGG 0.485622 1_3:-69114544 Msa0136870:CDS
GAGTGGAGGGTAAGAGGATG+AGG 0.493794 1_3:+69114977 None:intergenic
CGTGGCAAGGTCAGGGGCGT+CGG 0.495943 1_3:+69114754 None:intergenic
GGATGTTGTTGAGCTTAGTC+CGG 0.502498 1_3:-69114558 Msa0136870:CDS
TAGGATGGACATGGGAAAGG+GGG 0.503705 1_3:+69114934 None:intergenic
TGTCTCAACCAGATGATAGT+TGG 0.504609 1_3:-69112767 Msa0136870:CDS
GACGGAGACGGTGGTTGGTG+GGG 0.509831 1_3:+69114894 None:intergenic
TTATTGTGTGCAGTCCAATT+CGG 0.511671 1_3:-69113013 Msa0136870:intron
TGGAGAAAGTGGCTTTGTAC+AGG 0.512190 1_3:-69112742 Msa0136870:intron
TCAGAGTCGGAAGTGGCGGC+AGG 0.512965 1_3:+69115055 None:intergenic
CAACCAGATGATAGTTGGAC+TGG 0.517272 1_3:-69112762 Msa0136870:CDS
ATTGAGTCAGGATTTGATGC+TGG 0.518551 1_3:-69112984 Msa0136870:CDS
GGAAGTGGCGGCAGGAGGGG+CGG 0.523885 1_3:+69115063 None:intergenic
GGGTGGGGCTAAAGTGCGCA+TGG 0.524410 1_3:+69114954 None:intergenic
AGTCGGAAGTGGCGGCAGGA+GGG 0.524838 1_3:+69115059 None:intergenic
GGTTTAGATTGAAGCGGCGT+AGG 0.525093 1_3:+69114915 None:intergenic
ATGGAACATCCTTTCCAAAA+CGG 0.525427 1_3:+69111970 None:intergenic
GCATGGGAGTGGAGGGTAAG+AGG 0.525884 1_3:+69114971 None:intergenic
TATGAGGGCATCATCATTGA+AGG 0.530892 1_3:-69111940 Msa0136870:CDS
TAAAGTGCGCATGGGAGTGG+AGG 0.532726 1_3:+69114963 None:intergenic
GACGGTGGTGTCTTGACGTA+CGG 0.543425 1_3:+69114847 None:intergenic
GATAGTTGGACTGGAGAAAG+TGG 0.543932 1_3:-69112753 Msa0136870:CDS
GGTGTCTTGACGTACGGCGG+CGG 0.544339 1_3:+69114853 None:intergenic
TCCACTGCAGAAGCGTTGTG+TGG 0.545176 1_3:-69114593 Msa0136870:CDS
ACAGTTCCAAATTTCTCAGG+TGG 0.548734 1_3:+69114500 None:intergenic
GTGTCTATGACTGCACACTC+TGG 0.549427 1_3:-69111298 Msa0136870:three_prime_UTR
TAGATTGAAGCGGCGTAGGA+TGG 0.550133 1_3:+69114919 None:intergenic
TGTCTAATTGAGGGTTATCA+CGG 0.551013 1_3:+69115116 None:intergenic
GATGAGGCGGTGTTAATGAA+AGG 0.551705 1_3:+69114993 None:intergenic
AAAGGGTTGCGAGTCGGTGA+CGG 0.551990 1_3:+69114876 None:intergenic
GGCCAGAAACCTGAAGAGAA+TGG 0.557359 1_3:-69112931 Msa0136870:CDS
TTGCGAGTCGGTGACGGAGA+CGG 0.557465 1_3:+69114882 None:intergenic
AGGGGCGTCGGAAACGTCGA+TGG 0.558624 1_3:+69114766 None:intergenic
GGAATGGGTTTGATATTAGT+CGG 0.561988 1_3:-69114529 Msa0136870:CDS
CTCAGCGGCAGGTTCGATCT+CGG 0.562464 1_3:+69114805 None:intergenic
CGCGTGTGTGAGACGTGGCA+AGG 0.563503 1_3:+69114741 None:intergenic
TCGGTGACGGAGACGGTGGT+TGG 0.563811 1_3:+69114889 None:intergenic
CTCTTAATCGCAAGCTTCGG+CGG 0.564323 1_3:+69114653 None:intergenic
GTGATGAGTTTGGTCAGAGT+CGG 0.570585 1_3:+69115042 None:intergenic
TGGAAGAGTGACTCAGCGGC+AGG 0.570715 1_3:+69114794 None:intergenic
GTACAGCACCAGTTGACAAA+GGG 0.571677 1_3:+69112605 None:intergenic
GAGAGGAGCTGGAGTCCAGA+CGG 0.574346 1_3:+69114829 None:intergenic
TTACAGATGCCAATTTATCA+GGG 0.577062 1_3:+69111043 None:intergenic
GGTGGGGCTAAAGTGCGCAT+GGG 0.577657 1_3:+69114955 None:intergenic
TCATCTGGTTGAGACAATAC+AGG 0.579533 1_3:+69112774 None:intergenic
TTGAGCTTAGTCCGGTTATG+GGG 0.580245 1_3:-69114550 Msa0136870:CDS
CCACTCTTAATCGCAAGCTT+CGG 0.586640 1_3:+69114650 None:intergenic
TCATTGAAGGAGCTAGAGGA+TGG 0.591024 1_3:-69111927 Msa0136870:CDS
GTGAGACGTGGCAAGGTCAG+GGG 0.594184 1_3:+69114748 None:intergenic
GATGCCCTCATACTCCTCCA+TGG 0.596036 1_3:+69111951 None:intergenic
CCCACACAACGCTTCTGCAG+TGG 0.596333 1_3:+69114592 None:intergenic
ATCGTCCAATAGAATTGGAG+TGG 0.597057 1_3:+69115162 None:intergenic
AGTTTGGTCAGAGTCGGAAG+TGG 0.597586 1_3:+69115048 None:intergenic
TGGTGGGGTTTAGATTGAAG+CGG 0.600108 1_3:+69114909 None:intergenic
GAAGCGGCGTAGGATGGACA+TGG 0.600277 1_3:+69114925 None:intergenic
AGCACCAGTTGACAAAGGGT+TGG 0.602600 1_3:+69112609 None:intergenic
TTGGTCAGAGTCGGAAGTGG+CGG 0.603781 1_3:+69115051 None:intergenic
CAGTTCCAAATTTCTCAGGT+GGG 0.606055 1_3:+69114501 None:intergenic
AGTACAGCACCAGTTGACAA+AGG 0.607829 1_3:+69112604 None:intergenic
TTTGAATTATGCCTTTGCTG+AGG 0.608362 1_3:-69111440 Msa0136870:three_prime_UTR
GCAGGTTCGATCTCGGAGAG+AGG 0.610044 1_3:+69114812 None:intergenic
CCGAAGCTTGCGATTAAGAG+TGG 0.610290 1_3:-69114650 Msa0136870:CDS
CCACTGCAGAAGCGTTGTGT+GGG 0.619285 1_3:-69114592 Msa0136870:CDS
AGGAGCTGGAGTCCAGACGG+TGG 0.619490 1_3:+69114832 None:intergenic
CAGTATCTTCAGCTTAAAGT+CGG 0.619863 1_3:-69114713 Msa0136870:CDS
GCCACGTCTCACACACGCGC+CGG 0.620260 1_3:-69114737 Msa0136870:CDS
CGGCGGAAAGGGTTGCGAGT+CGG 0.621174 1_3:+69114870 None:intergenic
CAGGATTTGATGCTGGCAAG+AGG 0.625026 1_3:-69112977 Msa0136870:CDS
AAAGTGCGCATGGGAGTGGA+GGG 0.625677 1_3:+69114964 None:intergenic
TGACCTAATTCCGGATCCAG+TGG 0.627958 1_3:+69114466 None:intergenic
ATCATCATTGAAGGAGCTAG+AGG 0.629324 1_3:-69111931 Msa0136870:CDS
TGGAGGGTAAGAGGATGAGG+CGG 0.630907 1_3:+69114980 None:intergenic
TGTTCCATGGAGGAGTATGA+GGG 0.635397 1_3:-69111955 Msa0136870:CDS
AGATGTTTGATCCTCAGCAA+AGG 0.639485 1_3:+69111429 None:intergenic
ATAGGAGAGATTTAAAGACT+GGG 0.643444 1_3:-69112820 Msa0136870:intron
TTTAAGCTGAAGATACTGAC+CGG 0.649623 1_3:+69114718 None:intergenic
CGGAAACGTCGATGGAAACG+TGG 0.650313 1_3:+69114774 None:intergenic
GGCTGCATATACGAGAGCAA+AGG 0.651480 1_3:-69112638 Msa0136870:CDS
TACAGGTACAATCTTGACAC+CGG 0.656089 1_3:+69112791 None:intergenic
GAGGATCAAACATCTCAGCA+TGG 0.667075 1_3:-69111421 Msa0136870:three_prime_UTR
ATCAAGAAAGGTTTGACACG+TGG 0.669419 1_3:-69115141 Msa0136870:five_prime_UTR
CGAGTCGGTGACGGAGACGG+TGG 0.672480 1_3:+69114885 None:intergenic
GTTGTGTGGGTTGAAGAAAG+GGG 0.680851 1_3:-69114579 Msa0136870:CDS
GAAACTATGCATTATCAGAG+AGG 0.691201 1_3:-69111254 Msa0136870:three_prime_UTR
AAGCGGCGTAGGATGGACAT+GGG 0.692247 1_3:+69114926 None:intergenic
AGATGTCTTAGAAAAGTGAG+TGG 0.694735 1_3:+69115193 None:intergenic
AGGGATCTACAGTTTAAGGG+AGG 0.698588 1_3:+69111062 None:intergenic
ACCGGCGCGTGTGTGAGACG+TGG 0.704486 1_3:+69114736 None:intergenic
TTGGAAAGGATGTTCCATGG+AGG 0.712019 1_3:-69111965 Msa0136870:CDS
GGTGGTGTCTTGACGTACGG+CGG 0.712276 1_3:+69114850 None:intergenic
AACGTGGAAGAGTGACTCAG+CGG 0.719906 1_3:+69114790 None:intergenic
GAAGCGATAGCAAGAAACGA+CGG 0.765356 1_3:+69114677 None:intergenic
TGGGCAGAAACAGATGACTG+AGG 0.793337 1_3:-69112578 Msa0136870:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTAAAACAATCAAA+AGG - chr1_3:69113869-69113888 Msa0136870:intron 10.0%
!!! ACATGTTAACTTTTATTATT+TGG + chr1_3:69111163-69111182 None:intergenic 15.0%
!!! TTATTTTCCAAAATTTGATT+TGG - chr1_3:69111782-69111801 Msa0136870:intron 15.0%
!! CACTAATAATACATATATAT+AGG + chr1_3:69112127-69112146 None:intergenic 15.0%
!! AAAGAATTGTATACTTAATA+GGG + chr1_3:69112634-69112653 None:intergenic 15.0%
!! AAAAGAATTGTATACTTAAT+AGG + chr1_3:69112635-69112654 None:intergenic 15.0%
!!! ACAATTTTCTTTTATGTTAT+AGG - chr1_3:69113342-69113361 Msa0136870:intron 15.0%
!! AACTACATTATTCAAAAATA+GGG - chr1_3:69114031-69114050 Msa0136870:intron 15.0%
!! ATATATCAATAAAAGAACAA+AGG + chr1_3:69114438-69114457 None:intergenic 15.0%
!! ATAATAACATTGATATTGAA+AGG + chr1_3:69114619-69114638 None:intergenic 15.0%
!!! GAATGTAAAATAAACAATTT+TGG - chr1_3:69114781-69114800 Msa0136870:CDS 15.0%
!!! AACATTTTTTTATCGTAAAA+AGG - chr1_3:69115074-69115093 Msa0136870:five_prime_UTR 15.0%
!! TTAATACTGACAATTATACA+AGG + chr1_3:69111910-69111929 None:intergenic 20.0%
!! TTGTATAATTGTCAGTATTA+AGG - chr1_3:69111909-69111928 Msa0136870:intron 20.0%
!! AACATCGAATCAATATATTT+AGG - chr1_3:69112380-69112399 Msa0136870:intron 20.0%
!! ACATCGAATCAATATATTTA+GGG - chr1_3:69112381-69112400 Msa0136870:intron 20.0%
!!! ATTCTTTTTCACTTATATCA+TGG - chr1_3:69112647-69112666 Msa0136870:intron 20.0%
!! CAAAAATATCTATATTCGAA+AGG + chr1_3:69112768-69112787 None:intergenic 20.0%
!!! CTTTCGAATATAGATATTTT+TGG - chr1_3:69112766-69112785 Msa0136870:CDS 20.0%
!! ACAATATTATCCTTAGAAAA+AGG + chr1_3:69112901-69112920 None:intergenic 20.0%
!! CAACTACATTATTCAAAAAT+AGG - chr1_3:69114030-69114049 Msa0136870:intron 20.0%
!! AATATCAATGTTATTATTGC+AGG - chr1_3:69114622-69114641 Msa0136870:CDS 20.0%
!!! TTTTTTAAGAAAAAAGGTGT+GGG + chr1_3:69114854-69114873 None:intergenic 20.0%
!!! TTTTTTTAAGAAAAAAGGTG+TGG + chr1_3:69114855-69114874 None:intergenic 20.0%
!!! CCAACTTTTTTTAAGAAAAA+AGG + chr1_3:69114860-69114879 None:intergenic 20.0%
!!! CCTTTTTTCTTAAAAAAAGT+TGG - chr1_3:69114857-69114876 Msa0136870:CDS 20.0%
!! AATATATTGACACAAACTTA+TGG - chr1_3:69114957-69114976 Msa0136870:CDS 20.0%
! TGTTTGATAAAATACGCTTT+GGG + chr1_3:69111097-69111116 None:intergenic 25.0%
!!! TTATTATTTGGTGATGAGTT+TGG + chr1_3:69111151-69111170 None:intergenic 25.0%
!! ATCAACACCAAATCAAATTT+TGG + chr1_3:69111792-69111811 None:intergenic 25.0%
! TTGTTATGATCTAGTAAAGT+AGG - chr1_3:69111992-69112011 Msa0136870:intron 25.0%
! TGTTGCAGATATTAAGATTA+TGG - chr1_3:69112079-69112098 Msa0136870:intron 25.0%
! ACTAAGAAGCTATTAACAAT+TGG - chr1_3:69112187-69112206 Msa0136870:intron 25.0%
! GGAAAATGATGATCAATAAT+GGG + chr1_3:69112498-69112517 None:intergenic 25.0%
! AGGAAAATGATGATCAATAA+TGG + chr1_3:69112499-69112518 None:intergenic 25.0%
!! ATTCTTTGTTCCTTTTTCTA+AGG - chr1_3:69112888-69112907 Msa0136870:intron 25.0%
! AAACGATGAATTCAAAGAAA+AGG + chr1_3:69112929-69112948 None:intergenic 25.0%
! AATGTGAAAAACACTTTGAA+TGG - chr1_3:69113012-69113031 Msa0136870:intron 25.0%
! AGAGAGTAAAGAGAAAATAT+TGG + chr1_3:69113121-69113140 None:intergenic 25.0%
! TCTTTACTCTCTTTGATATT+GGG - chr1_3:69113129-69113148 Msa0136870:intron 25.0%
! AGTACAGAGTTATTGTAAAA+AGG + chr1_3:69113304-69113323 None:intergenic 25.0%
! GAAAGATGATAGCAATAATA+AGG + chr1_3:69113630-69113649 None:intergenic 25.0%
!!! ATTTTAGCCATTTCCTAATT+AGG - chr1_3:69113799-69113818 Msa0136870:intron 25.0%
!! TATTTGAAGTCTACCTAATT+AGG + chr1_3:69113815-69113834 None:intergenic 25.0%
! ATAATGTCTTGGATTTGTAA+AGG + chr1_3:69114121-69114140 None:intergenic 25.0%
! AGAATATCATGACAAATATC+AGG - chr1_3:69114363-69114382 Msa0136870:intron 25.0%
!!! TTTTGAAGAAAACAAAAGCT+TGG + chr1_3:69114998-69115017 None:intergenic 25.0%
!!! AAGCTTTTGTTTTCTTCAAA+AGG - chr1_3:69114997-69115016 Msa0136870:CDS 25.0%
GTGTTTGATAAAATACGCTT+TGG + chr1_3:69111098-69111117 None:intergenic 30.0%
! AACATTTTCAACCCAAATTG+AGG + chr1_3:69111747-69111766 None:intergenic 30.0%
!! CAATTTGGGTTGAAAATGTT+AGG - chr1_3:69111747-69111766 Msa0136870:intron 30.0%
! AGGACACAAAATTTCTAAAG+GGG + chr1_3:69112018-69112037 None:intergenic 30.0%
CAGGACACAAAATTTCTAAA+GGG + chr1_3:69112019-69112038 None:intergenic 30.0%
ACAGGACACAAAATTTCTAA+AGG + chr1_3:69112020-69112039 None:intergenic 30.0%
GTTTGATCCTTAGAATGATA+TGG - chr1_3:69112316-69112335 Msa0136870:intron 30.0%
GTACAATCCATATCATTCTA+AGG + chr1_3:69112326-69112345 None:intergenic 30.0%
GCTTGGATTTGTACATAAAT+AGG + chr1_3:69112519-69112538 None:intergenic 30.0%
TGTATACTTAATAGGGAACT+TGG + chr1_3:69112627-69112646 None:intergenic 30.0%
GTAATGAAGTAATGCTACAT+TGG + chr1_3:69112695-69112714 None:intergenic 30.0%
TGTAGCATTACTTCATTACT+CGG - chr1_3:69112696-69112715 Msa0136870:intron 30.0%
ACACTTTATAGCACTTACAT+TGG + chr1_3:69112792-69112811 None:intergenic 30.0%
GTTCGACACATAAATTGTTT+CGG - chr1_3:69112971-69112990 Msa0136870:CDS 30.0%
CACATTCAAAATCATACTCA+AGG + chr1_3:69112998-69113017 None:intergenic 30.0%
AAGTAGTGATTTACATGCAA+AGG + chr1_3:69113065-69113084 None:intergenic 30.0%
CTCTTTACTCTCTTTGATAT+TGG - chr1_3:69113128-69113147 Msa0136870:intron 30.0%
! TCTGATGTGAGACTATTTTA+TGG - chr1_3:69113226-69113245 Msa0136870:intron 30.0%
! CTGATGTGAGACTATTTTAT+GGG - chr1_3:69113227-69113246 Msa0136870:intron 30.0%
! TGATGTGAGACTATTTTATG+GGG - chr1_3:69113228-69113247 Msa0136870:intron 30.0%
TATAGGAGAGATTTAAAGAC+TGG - chr1_3:69113359-69113378 Msa0136870:intron 30.0%
ATAGGAGAGATTTAAAGACT+GGG - chr1_3:69113360-69113379 Msa0136870:intron 30.0%
AAACAATCTTTACCACTTGA+AGG + chr1_3:69113501-69113520 None:intergenic 30.0%
TCTTTCTTTCACTCTATGAT+AGG + chr1_3:69113703-69113722 None:intergenic 30.0%
!! CGACAGTAATGATTGTTTTT+AGG - chr1_3:69113723-69113742 Msa0136870:intron 30.0%
AAGTCTACCTAATTAGGAAA+TGG + chr1_3:69113809-69113828 None:intergenic 30.0%
!! CTTTGCAATTTTAATCATCG+CGG + chr1_3:69113841-69113860 None:intergenic 30.0%
! AAAATGCATGTCTCTTTTCT+TGG - chr1_3:69113943-69113962 Msa0136870:intron 30.0%
TTGGAAGAAGAAAGAAAAAG+AGG + chr1_3:69114004-69114023 None:intergenic 30.0%
AATAATGTAGTTGCAGTTGT+TGG + chr1_3:69114023-69114042 None:intergenic 30.0%
ATTATTCAAAAATAGGGTCC+TGG - chr1_3:69114037-69114056 Msa0136870:intron 30.0%
AAGAATCACCAAAACTAACA+AGG - chr1_3:69114089-69114108 Msa0136870:intron 30.0%
!! GGATAAAACCTTGTTAGTTT+TGG + chr1_3:69114100-69114119 None:intergenic 30.0%
!! ATGATGGATCAATAATGTCT+TGG + chr1_3:69114132-69114151 None:intergenic 30.0%
! TGACAACAATGTCATCATTT+TGG + chr1_3:69114160-69114179 None:intergenic 30.0%
TATCATGACAAATATCAGGA+AGG - chr1_3:69114367-69114386 Msa0136870:intron 30.0%
TAAAGAACTTCTGACCAAAA+TGG - chr1_3:69114693-69114712 Msa0136870:CDS 30.0%
! TTCTGACCAAAATGGAATTT+TGG - chr1_3:69114701-69114720 Msa0136870:CDS 30.0%
! ACAATGCCAAAATTCCATTT+TGG + chr1_3:69114710-69114729 None:intergenic 30.0%
CTAATACAACGTGTTTAAAC+AGG + chr1_3:69115044-69115063 None:intergenic 30.0%
TTACAGATGCCAATTTATCA+GGG + chr1_3:69115140-69115159 None:intergenic 30.0%
ATTACAGATGCCAATTTATC+AGG + chr1_3:69115141-69115160 None:intergenic 30.0%
AGATGTCTTAGAAAAGTGAG+TGG + chr1_3:69110990-69111009 None:intergenic 35.0%
ATCTTCCACTCCAATTCTAT+TGG - chr1_3:69111013-69111032 Msa0136870:three_prime_UTR 35.0%
TCTTGATCGTCCAATAGAAT+TGG + chr1_3:69111026-69111045 None:intergenic 35.0%
TTCTATTGGACGATCAAGAA+AGG - chr1_3:69111027-69111046 Msa0136870:three_prime_UTR 35.0%
TGTCTAATTGAGGGTTATCA+CGG + chr1_3:69111067-69111086 None:intergenic 35.0%
TTTAAGCTGAAGATACTGAC+CGG + chr1_3:69111465-69111484 None:intergenic 35.0%
CAGTATCTTCAGCTTAAAGT+CGG - chr1_3:69111467-69111486 Msa0136870:three_prime_UTR 35.0%
!!! TTTTTGGTGAAGAGTGTTGT+TGG - chr1_3:69111563-69111582 Msa0136870:intron 35.0%
!!! TTTTGGTGAAGAGTGTTGTT+GGG - chr1_3:69111564-69111583 Msa0136870:intron 35.0%
! GGAATGGGTTTGATATTAGT+CGG - chr1_3:69111651-69111670 Msa0136870:intron 35.0%
AGAACAGTTCCAAATTTCTC+AGG + chr1_3:69111686-69111705 None:intergenic 35.0%
TTAGTGATTCATTGGCACTA+TGG - chr1_3:69112039-69112058 Msa0136870:intron 35.0%
! ATTATTAGTGCCACTCTGTT+CGG - chr1_3:69112137-69112156 Msa0136870:intron 35.0%
ATGACACATTCACAACCTAA+AGG + chr1_3:69112218-69112237 None:intergenic 35.0%
! TTAGGTTGTGAATGTGTCAT+TGG - chr1_3:69112218-69112237 Msa0136870:intron 35.0%
ACTCTTGCACTTACTTTCTT+TGG + chr1_3:69112298-69112317 None:intergenic 35.0%
TGGATTGTACTGAATGTACT+CGG - chr1_3:69112336-69112355 Msa0136870:intron 35.0%
ATCGTAAAATCAAGGAAGCT+TGG + chr1_3:69112536-69112555 None:intergenic 35.0%
GGCTATTCATCGTAAAATCA+AGG + chr1_3:69112544-69112563 None:intergenic 35.0%
TTACGATTCAAAATCGCTTG+TGG + chr1_3:69112600-69112619 None:intergenic 35.0%
GAATTCATCGTTTCTACTGA+TGG - chr1_3:69112936-69112955 Msa0136870:CDS 35.0%
TTATTGTGTGCAGTCCAATT+CGG - chr1_3:69113167-69113186 Msa0136870:intron 35.0%
TTTAAAGACTGGGAATCTTC+CGG - chr1_3:69113370-69113389 Msa0136870:intron 35.0%
! AGGTAAAGTGTGTGGAATTT+TGG - chr1_3:69113458-69113477 Msa0136870:intron 35.0%
ATAGACATGATTACCTTTGC+AGG - chr1_3:69113521-69113540 Msa0136870:intron 35.0%
TAACTAAACAAGAACGACAG+TGG + chr1_3:69113670-69113689 None:intergenic 35.0%
!! AGTTTTGGTGATTCTTCTAC+CGG + chr1_3:69114085-69114104 None:intergenic 35.0%
! CATCATTTTGGACAGTATGA+TGG + chr1_3:69114148-69114167 None:intergenic 35.0%
ATGATGACATTGTTGTCACT+CGG - chr1_3:69114162-69114181 Msa0136870:intron 35.0%
ATGGAACATCCTTTCCAAAA+CGG + chr1_3:69114213-69114232 None:intergenic 35.0%
TGTCATGATATTCTCCCAAT+TGG + chr1_3:69114357-69114376 None:intergenic 35.0%
AGCGTCAATAAGTTTCAACT+AGG - chr1_3:69114555-69114574 Msa0136870:CDS 35.0%
ACATCTATTCTTGTTGCTGA+TGG - chr1_3:69114650-69114669 Msa0136870:CDS 35.0%
TTTGAATTATGCCTTTGCTG+AGG - chr1_3:69114740-69114759 Msa0136870:CDS 35.0%
! CACTTTTGCAGCTCAAATAT+AGG - chr1_3:69114821-69114840 Msa0136870:CDS 35.0%
GAAACTATGCATTATCAGAG+AGG - chr1_3:69114926-69114945 Msa0136870:CDS 35.0%
ATCAGGGATCTACAGTTTAA+GGG + chr1_3:69115124-69115143 None:intergenic 35.0%
TATCAGGGATCTACAGTTTA+AGG + chr1_3:69115125-69115144 None:intergenic 35.0%
ACTGTAGATCCCTGATAAAT+TGG - chr1_3:69115128-69115147 Msa0136870:five_prime_UTR 35.0%
ATCGTCCAATAGAATTGGAG+TGG + chr1_3:69111021-69111040 None:intergenic 40.0%
ATCAAGAAAGGTTTGACACG+TGG - chr1_3:69111039-69111058 Msa0136870:three_prime_UTR 40.0%
GGTGCGTATTGTCTAATTGA+GGG + chr1_3:69111076-69111095 None:intergenic 40.0%
ATAGCAAGAAACGACGGTTT+CGG + chr1_3:69111500-69111519 None:intergenic 40.0%
!! GAGTGGTGTGTTTGAGTTTT+TGG - chr1_3:69111547-69111566 Msa0136870:intron 40.0%
CAGTTCCAAATTTCTCAGGT+GGG + chr1_3:69111682-69111701 None:intergenic 40.0%
ACAGTTCCAAATTTCTCAGG+TGG + chr1_3:69111683-69111702 None:intergenic 40.0%
GTCAGTTTCTGCCTCAATTT+GGG - chr1_3:69111733-69111752 Msa0136870:intron 40.0%
GTGTCCTGTTAGTGATTCAT+TGG - chr1_3:69112031-69112050 Msa0136870:intron 40.0%
AGTGCCAATGAATCACTAAC+AGG + chr1_3:69112038-69112057 None:intergenic 40.0%
ACAAAAAACTCCGAACAGAG+TGG + chr1_3:69112150-69112169 None:intergenic 40.0%
TAACAATTGGCGTTGCCTTT+AGG - chr1_3:69112200-69112219 Msa0136870:intron 40.0%
ATTGTACTGAATGTACTCGG+AGG - chr1_3:69112339-69112358 Msa0136870:intron 40.0%
AAGCTAAGCACAAGTCCATA+GGG - chr1_3:69112441-69112460 Msa0136870:intron 40.0%
TGGCATAACATAATTGGTCG+AGG + chr1_3:69112580-69112599 None:intergenic 40.0%
CGCTTGTGGCATAACATAAT+TGG + chr1_3:69112586-69112605 None:intergenic 40.0%
! GCTATAAAGTGTTTCAGCCA+TGG - chr1_3:69112800-69112819 Msa0136870:CDS 40.0%
ATCACTCTACAAGTCTACCA+AGG + chr1_3:69112848-69112867 None:intergenic 40.0%
TGGTAGACTTGTAGAGTGAT+TGG - chr1_3:69112848-69112867 Msa0136870:intron 40.0%
GTTTCTGTTGCAACTCTATC+TGG - chr1_3:69113039-69113058 Msa0136870:intron 40.0%
GACTCAATAAGTGACCGAAT+TGG + chr1_3:69113184-69113203 None:intergenic 40.0%
ATTCGGTCACTTATTGAGTC+AGG - chr1_3:69113184-69113203 Msa0136870:intron 40.0%
ATTGAGTCAGGATTTGATGC+TGG - chr1_3:69113196-69113215 Msa0136870:intron 40.0%
TACAGGTACAATCTTGACAC+CGG + chr1_3:69113392-69113411 None:intergenic 40.0%
TCATCTGGTTGAGACAATAC+AGG + chr1_3:69113409-69113428 None:intergenic 40.0%
TGTCTCAACCAGATGATAGT+TGG - chr1_3:69113413-69113432 Msa0136870:intron 40.0%
CTTTGTACAGGTAAAGTGTG+TGG - chr1_3:69113450-69113469 Msa0136870:intron 40.0%
TTTGCTTGACTACCTTCAAG+TGG - chr1_3:69113486-69113505 Msa0136870:intron 40.0%
TTATCCAACCCTTTGTCAAC+TGG - chr1_3:69113567-69113586 Msa0136870:intron 40.0%
TTTAGGAAACCGAACCTACT+AGG - chr1_3:69113740-69113759 Msa0136870:intron 40.0%
CTCACTTACTACTTGTACAC+CGG - chr1_3:69114063-69114082 Msa0136870:intron 40.0%
TGATGACATTGTTGTCACTC+GGG - chr1_3:69114163-69114182 Msa0136870:intron 40.0%
!!! GTTTTGGAAAGGATGTTCCA+TGG - chr1_3:69114212-69114231 Msa0136870:intron 40.0%
!! TATGAGGGCATCATCATTGA+AGG - chr1_3:69114240-69114259 Msa0136870:intron 40.0%
ATCATCATTGAAGGAGCTAG+AGG - chr1_3:69114249-69114268 Msa0136870:intron 40.0%
GAACCCTCTCATACTTTATG+CGG + chr1_3:69114335-69114354 None:intergenic 40.0%
AAGTATGAGAGGGTTCCAAT+TGG - chr1_3:69114339-69114358 Msa0136870:intron 40.0%
AGTATGAGAGGGTTCCAATT+GGG - chr1_3:69114340-69114359 Msa0136870:intron 40.0%
AGATGTTTGATCCTCAGCAA+AGG + chr1_3:69114754-69114773 None:intergenic 40.0%
GGGTGCGTATTGTCTAATTG+AGG + chr1_3:69111077-69111096 None:intergenic 45.0%
GTGATGAGTTTGGTCAGAGT+CGG + chr1_3:69111141-69111160 None:intergenic 45.0%
! GATGAGGCGGTGTTAATGAA+AGG + chr1_3:69111190-69111209 None:intergenic 45.0%
TGGTGGGGTTTAGATTGAAG+CGG + chr1_3:69111274-69111293 None:intergenic 45.0%
GAAGCGATAGCAAGAAACGA+CGG + chr1_3:69111506-69111525 None:intergenic 45.0%
CCACTCTTAATCGCAAGCTT+CGG + chr1_3:69111533-69111552 None:intergenic 45.0%
! CGTTGTGTGGGTTGAAGAAA+GGG - chr1_3:69111600-69111619 Msa0136870:intron 45.0%
! GTTGTGTGGGTTGAAGAAAG+GGG - chr1_3:69111601-69111620 Msa0136870:intron 45.0%
GGATGTTGTTGAGCTTAGTC+CGG - chr1_3:69111622-69111641 Msa0136870:intron 45.0%
TGTTGAGCTTAGTCCGGTTA+TGG - chr1_3:69111628-69111647 Msa0136870:intron 45.0%
GTTGAGCTTAGTCCGGTTAT+GGG - chr1_3:69111629-69111648 Msa0136870:intron 45.0%
TTGAGCTTAGTCCGGTTATG+GGG - chr1_3:69111630-69111649 Msa0136870:intron 45.0%
TTAGTCCGGTTATGGGGAAT+GGG - chr1_3:69111636-69111655 Msa0136870:intron 45.0%
TCAAACCCATTCCCCATAAC+CGG + chr1_3:69111644-69111663 None:intergenic 45.0%
ATCGACCCACCTGAGAAATT+TGG - chr1_3:69111674-69111693 Msa0136870:intron 45.0%
ACTGTTCTTGTCTTTGCCAC+TGG - chr1_3:69111698-69111717 Msa0136870:intron 45.0%
GGCAGAAACTGACCTAATTC+CGG + chr1_3:69111726-69111745 None:intergenic 45.0%
GGTCAGTTTCTGCCTCAATT+TGG - chr1_3:69111732-69111751 Msa0136870:intron 45.0%
! GGTTGTGAATGTGTCATTGG+TGG - chr1_3:69112221-69112240 Msa0136870:intron 45.0%
ACCTAACTGATAGACAGTCG+AGG - chr1_3:69112247-69112266 Msa0136870:intron 45.0%
CCTAACTGATAGACAGTCGA+GGG - chr1_3:69112248-69112267 Msa0136870:intron 45.0%
CTAACTGATAGACAGTCGAG+GGG - chr1_3:69112249-69112268 Msa0136870:intron 45.0%
GAAGCTAAGCACAAGTCCAT+AGG - chr1_3:69112440-69112459 Msa0136870:intron 45.0%
GAAAAGTCTCCTTCTCCCTA+TGG + chr1_3:69112459-69112478 None:intergenic 45.0%
TTTCAGCCATGGCTGTAAGA+GGG - chr1_3:69112811-69112830 Msa0136870:CDS 45.0%
CTCTACAAGTCTACCAAGGA+AGG + chr1_3:69112844-69112863 None:intergenic 45.0%
! AGCCATTCTCTTCAGGTTTC+TGG + chr1_3:69113254-69113273 None:intergenic 45.0%
CCTGATAAGCCATTCTCTTC+AGG + chr1_3:69113261-69113280 None:intergenic 45.0%
CCTGAAGAGAATGGCTTATC+AGG - chr1_3:69113258-69113277 Msa0136870:intron 45.0%
CAACCAGATGATAGTTGGAC+TGG - chr1_3:69113418-69113437 Msa0136870:intron 45.0%
TCTCCAGTCCAACTATCATC+TGG + chr1_3:69113424-69113443 None:intergenic 45.0%
! GATAGTTGGACTGGAGAAAG+TGG - chr1_3:69113427-69113446 Msa0136870:intron 45.0%
!! TGGAGAAAGTGGCTTTGTAC+AGG - chr1_3:69113438-69113457 Msa0136870:intron 45.0%
GTACAGCACCAGTTGACAAA+GGG + chr1_3:69113578-69113597 None:intergenic 45.0%
AGTACAGCACCAGTTGACAA+AGG + chr1_3:69113579-69113598 None:intergenic 45.0%
!! TCAACTGGTGCTGTACTTTG+TGG - chr1_3:69113582-69113601 Msa0136870:intron 45.0%
!! CAACTGGTGCTGTACTTTGT+GGG - chr1_3:69113583-69113602 Msa0136870:intron 45.0%
AGAGCTAGTCCTAGTAGGTT+CGG + chr1_3:69113752-69113771 None:intergenic 45.0%
ATTCCAGAGCTAGTCCTAGT+AGG + chr1_3:69113757-69113776 None:intergenic 45.0%
TTGGAAAGGATGTTCCATGG+AGG - chr1_3:69114215-69114234 Msa0136870:intron 45.0%
! ATGTTCCATGGAGGAGTATG+AGG - chr1_3:69114224-69114243 Msa0136870:intron 45.0%
! TGTTCCATGGAGGAGTATGA+GGG - chr1_3:69114225-69114244 Msa0136870:intron 45.0%
TCATTGAAGGAGCTAGAGGA+TGG - chr1_3:69114253-69114272 Msa0136870:intron 45.0%
ACCACCGCATAAAGTATGAG+AGG - chr1_3:69114328-69114347 Msa0136870:intron 45.0%
CCACCGCATAAAGTATGAGA+GGG - chr1_3:69114329-69114348 Msa0136870:intron 45.0%
! GAAGCAGCTAACTGGTTCAT+GGG + chr1_3:69114485-69114504 None:intergenic 45.0%
! TGAAGCAGCTAACTGGTTCA+TGG + chr1_3:69114486-69114505 None:intergenic 45.0%
TGAGAGATGAAGCAGCTAAC+TGG + chr1_3:69114493-69114512 None:intergenic 45.0%
CATCTCTCAATACAGTGTCC+TGG - chr1_3:69114504-69114523 Msa0136870:CDS 45.0%
AACACCAGTTGACACAAACC+AGG + chr1_3:69114525-69114544 None:intergenic 45.0%
GAGGATCAAACATCTCAGCA+TGG - chr1_3:69114759-69114778 Msa0136870:CDS 45.0%
AGGGATCTACAGTTTAAGGG+AGG + chr1_3:69115121-69115140 None:intergenic 45.0%
AGTTTGGTCAGAGTCGGAAG+TGG + chr1_3:69111135-69111154 None:intergenic 50.0%
TAGGATGGACATGGGAAAGG+GGG + chr1_3:69111249-69111268 None:intergenic 50.0%
GTAGGATGGACATGGGAAAG+GGG + chr1_3:69111250-69111269 None:intergenic 50.0%
CGTAGGATGGACATGGGAAA+GGG + chr1_3:69111251-69111270 None:intergenic 50.0%
TAGATTGAAGCGGCGTAGGA+TGG + chr1_3:69111264-69111283 None:intergenic 50.0%
GGTTTAGATTGAAGCGGCGT+AGG + chr1_3:69111268-69111287 None:intergenic 50.0%
AACGTGGAAGAGTGACTCAG+CGG + chr1_3:69111393-69111412 None:intergenic 50.0%
CTCTTAATCGCAAGCTTCGG+CGG + chr1_3:69111530-69111549 None:intergenic 50.0%
CCGAAGCTTGCGATTAAGAG+TGG - chr1_3:69111530-69111549 Msa0136870:CDS 50.0%
! GCGTTGTGTGGGTTGAAGAA+AGG - chr1_3:69111599-69111618 Msa0136870:intron 50.0%
CTTAGTCCGGTTATGGGGAA+TGG - chr1_3:69111635-69111654 Msa0136870:intron 50.0%
CTTGTCTTTGCCACTGGATC+CGG - chr1_3:69111704-69111723 Msa0136870:intron 50.0%
TTGCCACTGGATCCGGAATT+AGG - chr1_3:69111711-69111730 Msa0136870:intron 50.0%
TGACCTAATTCCGGATCCAG+TGG + chr1_3:69111717-69111736 None:intergenic 50.0%
CCCTCGACTGTCTATCAGTT+AGG + chr1_3:69112251-69112270 None:intergenic 50.0%
ATAGACAGTCGAGGGGAACT+AGG - chr1_3:69112256-69112275 Msa0136870:intron 50.0%
AGCACAAGTCCATAGGGAGA+AGG - chr1_3:69112447-69112466 Msa0136870:intron 50.0%
GGTCGAGGCAAATTGACATG+TGG + chr1_3:69112565-69112584 None:intergenic 50.0%
GTTTCAGCCATGGCTGTAAG+AGG - chr1_3:69112810-69112829 Msa0136870:CDS 50.0%
AACTTGCCCTCTTACAGCCA+TGG + chr1_3:69112820-69112839 None:intergenic 50.0%
AGAGGGCAAGTTACCTTCCT+TGG - chr1_3:69112828-69112847 Msa0136870:intron 50.0%
CAGGATTTGATGCTGGCAAG+AGG - chr1_3:69113203-69113222 Msa0136870:intron 50.0%
GGCCAGAAACCTGAAGAGAA+TGG - chr1_3:69113249-69113268 Msa0136870:intron 50.0%
CTCGTATATGCAGCCTGCAA+AGG + chr1_3:69113537-69113556 None:intergenic 50.0%
GGCTGCATATACGAGAGCAA+AGG - chr1_3:69113542-69113561 Msa0136870:intron 50.0%
AGCACCAGTTGACAAAGGGT+TGG + chr1_3:69113574-69113593 None:intergenic 50.0%
TGGGCAGAAACAGATGACTG+AGG - chr1_3:69113602-69113621 Msa0136870:intron 50.0%
!! GAACCTACTAGGACTAGCTC+TGG - chr1_3:69113751-69113770 Msa0136870:intron 50.0%
CAAGTAGTAAGTGAGCGACC+AGG + chr1_3:69114058-69114077 None:intergenic 50.0%
CTCGCTAGTCCAATTAGACC+AGG + chr1_3:69114189-69114208 None:intergenic 50.0%
!! CTGGTCTAATTGGACTAGCG+AGG - chr1_3:69114187-69114206 Msa0136870:intron 50.0%
!! GGATGGATTGCCAGTTAAGC+TGG - chr1_3:69114270-69114289 Msa0136870:intron 50.0%
! TTGCCAGTTAAGCTGGCTCT+TGG - chr1_3:69114277-69114296 Msa0136870:intron 50.0%
! TGCCAGTTAAGCTGGCTCTT+GGG - chr1_3:69114278-69114297 Msa0136870:intron 50.0%
CCCTCTCATACTTTATGCGG+TGG + chr1_3:69114332-69114351 None:intergenic 50.0%
! GTGTCCTGGTTTGTGTCAAC+TGG - chr1_3:69114518-69114537 Msa0136870:CDS 50.0%
GTGTCTATGACTGCACACTC+TGG - chr1_3:69114882-69114901 Msa0136870:CDS 50.0%
TTGGTCAGAGTCGGAAGTGG+CGG + chr1_3:69111132-69111151 None:intergenic 55.0%
TGGAGGGTAAGAGGATGAGG+CGG + chr1_3:69111203-69111222 None:intergenic 55.0%
GAGTGGAGGGTAAGAGGATG+AGG + chr1_3:69111206-69111225 None:intergenic 55.0%
AAAGTGCGCATGGGAGTGGA+GGG + chr1_3:69111219-69111238 None:intergenic 55.0%
TAAAGTGCGCATGGGAGTGG+AGG + chr1_3:69111220-69111239 None:intergenic 55.0%
ATGGACATGGGAAAGGGGGT+GGG + chr1_3:69111245-69111264 None:intergenic 55.0%
GCGTAGGATGGACATGGGAA+AGG + chr1_3:69111252-69111271 None:intergenic 55.0%
AAGCGGCGTAGGATGGACAT+GGG + chr1_3:69111257-69111276 None:intergenic 55.0%
AAAGGGTTGCGAGTCGGTGA+CGG + chr1_3:69111307-69111326 None:intergenic 55.0%
GACGGTGGTGTCTTGACGTA+CGG + chr1_3:69111336-69111355 None:intergenic 55.0%
TACGTCAAGACACCACCGTC+TGG - chr1_3:69111336-69111355 Msa0136870:three_prime_UTR 55.0%
CGGAAACGTCGATGGAAACG+TGG + chr1_3:69111409-69111428 None:intergenic 55.0%
TGTGAGACGTGGCAAGGTCA+GGG + chr1_3:69111436-69111455 None:intergenic 55.0%
!! TCCACTGCAGAAGCGTTGTG+TGG - chr1_3:69111587-69111606 Msa0136870:intron 55.0%
!! CCACTGCAGAAGCGTTGTGT+GGG - chr1_3:69111588-69111607 Msa0136870:intron 55.0%
ACATTGTTGTCACTCGGGCC+TGG - chr1_3:69114168-69114187 Msa0136870:intron 55.0%
TCACTCGGGCCTGGTCTAAT+TGG - chr1_3:69114177-69114196 Msa0136870:intron 55.0%
!!! TTGGACTAGCGAGGCCGTTT+TGG - chr1_3:69114196-69114215 Msa0136870:intron 55.0%
!!! CTAGCGAGGCCGTTTTGGAA+AGG - chr1_3:69114201-69114220 Msa0136870:intron 55.0%
GATGCCCTCATACTCCTCCA+TGG + chr1_3:69114232-69114251 None:intergenic 55.0%
! GCCAGTTAAGCTGGCTCTTG+GGG - chr1_3:69114279-69114298 Msa0136870:intron 55.0%
! CCAGTTAAGCTGGCTCTTGG+GGG - chr1_3:69114280-69114299 Msa0136870:intron 55.0%
GCATGGGAGTGGAGGGTAAG+AGG + chr1_3:69111212-69111231 None:intergenic 60.0%
GGCTAAAGTGCGCATGGGAG+TGG + chr1_3:69111223-69111242 None:intergenic 60.0%
GGTGGGGCTAAAGTGCGCAT+GGG + chr1_3:69111228-69111247 None:intergenic 60.0%
TGGACATGGGAAAGGGGGTG+GGG + chr1_3:69111244-69111263 None:intergenic 60.0%
GATGGACATGGGAAAGGGGG+TGG + chr1_3:69111246-69111265 None:intergenic 60.0%
GAAGCGGCGTAGGATGGACA+TGG + chr1_3:69111258-69111277 None:intergenic 60.0%
TGACGGAGACGGTGGTTGGT+GGG + chr1_3:69111290-69111309 None:intergenic 60.0%
!! TTGCGAGTCGGTGACGGAGA+CGG + chr1_3:69111301-69111320 None:intergenic 60.0%
TTGACGTACGGCGGCGGAAA+GGG + chr1_3:69111324-69111343 None:intergenic 60.0%
GGTGGTGTCTTGACGTACGG+CGG + chr1_3:69111333-69111352 None:intergenic 60.0%
GAGAGGAGCTGGAGTCCAGA+CGG + chr1_3:69111354-69111373 None:intergenic 60.0%
TCGATCTCGGAGAGAGGAGC+TGG + chr1_3:69111365-69111384 None:intergenic 60.0%
GCAGGTTCGATCTCGGAGAG+AGG + chr1_3:69111371-69111390 None:intergenic 60.0%
CTCAGCGGCAGGTTCGATCT+CGG + chr1_3:69111378-69111397 None:intergenic 60.0%
TGGAAGAGTGACTCAGCGGC+AGG + chr1_3:69111389-69111408 None:intergenic 60.0%
GTGAGACGTGGCAAGGTCAG+GGG + chr1_3:69111435-69111454 None:intergenic 60.0%
GTGTGAGACGTGGCAAGGTC+AGG + chr1_3:69111437-69111456 None:intergenic 60.0%
CCCACACAACGCTTCTGCAG+TGG + chr1_3:69111591-69111610 None:intergenic 60.0%
CCCCCAAGAGCCAGCTTAAC+TGG + chr1_3:69114283-69114302 None:intergenic 60.0%
GGGGGCAGTGGGACAGAAAA+CGG - chr1_3:69114298-69114317 Msa0136870:intron 60.0%
AGTCGGAAGTGGCGGCAGGA+GGG + chr1_3:69111124-69111143 None:intergenic 65.0%
TCAGAGTCGGAAGTGGCGGC+AGG + chr1_3:69111128-69111147 None:intergenic 65.0%
GGGTGGGGCTAAAGTGCGCA+TGG + chr1_3:69111229-69111248 None:intergenic 65.0%
! GACGGAGACGGTGGTTGGTG+GGG + chr1_3:69111289-69111308 None:intergenic 65.0%
! GTGACGGAGACGGTGGTTGG+TGG + chr1_3:69111291-69111310 None:intergenic 65.0%
!! TCGGTGACGGAGACGGTGGT+TGG + chr1_3:69111294-69111313 None:intergenic 65.0%
CGGCGGAAAGGGTTGCGAGT+CGG + chr1_3:69111313-69111332 None:intergenic 65.0%
CTTGACGTACGGCGGCGGAA+AGG + chr1_3:69111325-69111344 None:intergenic 65.0%
GGTGTCTTGACGTACGGCGG+CGG + chr1_3:69111330-69111349 None:intergenic 65.0%
AGGAGCTGGAGTCCAGACGG+TGG + chr1_3:69111351-69111370 None:intergenic 65.0%
!! AGGGGCGTCGGAAACGTCGA+TGG + chr1_3:69111417-69111436 None:intergenic 65.0%
CGCGTGTGTGAGACGTGGCA+AGG + chr1_3:69111442-69111461 None:intergenic 65.0%
! AAGCTGGCTCTTGGGGGCAG+TGG - chr1_3:69114286-69114305 Msa0136870:intron 65.0%
! AGCTGGCTCTTGGGGGCAGT+GGG - chr1_3:69114287-69114306 Msa0136870:intron 65.0%
GTCGGAAGTGGCGGCAGGAG+GGG + chr1_3:69111123-69111142 None:intergenic 70.0%
GAGTCGGAAGTGGCGGCAGG+AGG + chr1_3:69111125-69111144 None:intergenic 70.0%
!! CGAGTCGGTGACGGAGACGG+TGG + chr1_3:69111298-69111317 None:intergenic 70.0%
! CGTGGCAAGGTCAGGGGCGT+CGG + chr1_3:69111429-69111448 None:intergenic 70.0%
GCCACGTCTCACACACGCGC+CGG - chr1_3:69111443-69111462 Msa0136870:three_prime_UTR 70.0%
ACCGGCGCGTGTGTGAGACG+TGG + chr1_3:69111447-69111466 None:intergenic 70.0%
GGAAGTGGCGGCAGGAGGGG+CGG + chr1_3:69111120-69111139 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 69110984 69115218 69110984 ID=Msa0136870;Name=Msa0136870
chr1_3 mRNA 69110984 69115218 69110984 ID=Msa0136870-mRNA-1;Parent=Msa0136870;Name=Msa0136870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=195|0.6|0.83|0.83|1|1|6|512|323
chr1_3 exon 69110984 69111558 69110984 ID=Msa0136870-mRNA-1:exon:23875;Parent=Msa0136870-mRNA-1
chr1_3 exon 69111920 69111997 69111920 ID=Msa0136870-mRNA-1:exon:23874;Parent=Msa0136870-mRNA-1
chr1_3 exon 69112579 69112659 69112579 ID=Msa0136870-mRNA-1:exon:23873;Parent=Msa0136870-mRNA-1
chr1_3 exon 69112743 69112838 69112743 ID=Msa0136870-mRNA-1:exon:23872;Parent=Msa0136870-mRNA-1
chr1_3 exon 69112923 69113022 69112923 ID=Msa0136870-mRNA-1:exon:23871;Parent=Msa0136870-mRNA-1
chr1_3 exon 69114470 69115218 69114470 ID=Msa0136870-mRNA-1:exon:23870;Parent=Msa0136870-mRNA-1
chr1_3 five_prime_UTR 69115024 69115218 69115024 ID=Msa0136870-mRNA-1:five_prime_utr;Parent=Msa0136870-mRNA-1
chr1_3 CDS 69114470 69115023 69114470 ID=Msa0136870-mRNA-1:cds;Parent=Msa0136870-mRNA-1
chr1_3 CDS 69112923 69113022 69112923 ID=Msa0136870-mRNA-1:cds;Parent=Msa0136870-mRNA-1
chr1_3 CDS 69112743 69112838 69112743 ID=Msa0136870-mRNA-1:cds;Parent=Msa0136870-mRNA-1
chr1_3 CDS 69112579 69112659 69112579 ID=Msa0136870-mRNA-1:cds;Parent=Msa0136870-mRNA-1
chr1_3 CDS 69111920 69111997 69111920 ID=Msa0136870-mRNA-1:cds;Parent=Msa0136870-mRNA-1
chr1_3 CDS 69111496 69111558 69111496 ID=Msa0136870-mRNA-1:cds;Parent=Msa0136870-mRNA-1
chr1_3 three_prime_UTR 69110984 69111495 69110984 ID=Msa0136870-mRNA-1:three_prime_utr;Parent=Msa0136870-mRNA-1
Gene Sequence

>Msa0136870

ATGTCACTCCTTTCATTAACACCGCCTCATCCTCTTACCCTCCACTCCCATGCGCACTTTAGCCCCACCCCCTTTCCCATGTCCATCCTACGCCGCTTCAATCTAAACCCCACCAACCACCGTCTCCGTCACCGACTCGCAACCCTTTCCGCCGCCGTACGTCAAGACACCACCGTCTGGACTCCAGCTCCTCTCTCCGAGATCGAACCTGCCGCTGAGTCACTCTTCCACGTTTCCATCGACGTTTCCGACGCCCCTGACCTTGCCACGTCTCACACACGCGCCGGTCAGTATCTTCAGCTTAAAGTCGGTGATTCGCCGAAACCGTCGTTTCTTGCTATCGCTTCGCCGCCGAAGCTTGCGATTAAGAGTGGTGTGTTTGAGTTTTTGGTGAAGAGTGTTGTTGGGTCCACTGCAGAAGCGTTGTGTGGGTTGAAGAAAGGGGATGTTGTTGAGCTTAGTCCGGTTATGGGGAATGGGTTTGATATTAGTCGGATCGACCCACCTGAGAAATTTGGAACTGTTCTTGTCTTTGCCACTGGATCCGGAATTAGTCCAATTCGGTCACTTATTGAGTCAGGATTTGATGCTGGCAAGAGGTCTGATGTGAGACTATTTTATGGGGCCAGAAACCTGAAGAGAATGGCTTATCAGGAGAGATTTAAAGACTGGGAATCTTCCGGTGTCAAGATTGTACCTGTATTGTCTCAACCAGATGATAGTTGGACTGGAGAAAGTGGCTTTGTACAGGCTGCATATACGAGAGCAAAGGAATTATCCAACCCTTTGTCAACTGGTGCTGTACTTTGTGGGCAGAAACAGATGACTGAGCGAGGCCGTTTTGGAAAGGATGTTCCATGGAGGAGTATGAGGGCATCATCATTGAAGGAGCTAGAGGATGGATTGCCAGAAATTACATCTATTCTTGTTGCTGATGGAGTATCAGCTGAGAAGATACTAAAGAACTTCTGA

Protein sequence

>Msa0136870

MSLLSLTPPHPLTLHSHAHFSPTPFPMSILRRFNLNPTNHRLRHRLATLSAAVRQDTTVWTPAPLSEIEPAAESLFHVSIDVSDAPDLATSHTRAGQYLQLKVGDSPKPSFLAIASPPKLAIKSGVFEFLVKSVVGSTAEALCGLKKGDVVELSPVMGNGFDISRIDPPEKFGTVLVFATGSGISPIRSLIESGFDAGKRSDVRLFYGARNLKRMAYQERFKDWESSGVKIVPVLSQPDDSWTGESGFVQAAYTRAKELSNPLSTGAVLCGQKQMTERGRFGKDVPWRSMRASSLKELEDGLPEITSILVADGVSAEKILKNF*