AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGCAAAGCCTGTAAATT+TGG 0.174955 5_1:+2965436 None:intergenic
GACAACTCTGCCAAATTTAC+AGG 0.248797 5_1:-2965446 Msa0711110:three_prime_UTR
GATAACCAACCAATTAATAA+TGG 0.300740 5_1:+2966874 None:intergenic
AGCGGCCCTGGTTGTTTAGA+AGG 0.307014 5_1:-2966413 Msa0711110:CDS
ATAACCAACCAATTAATAAT+GGG 0.356894 5_1:+2966875 None:intergenic
TGCTGATTGTATTGACTCAT+TGG 0.364781 5_1:+2966817 None:intergenic
CTTAGAAGCAGGCATCTAAT+AGG 0.377948 5_1:+2965612 None:intergenic
AAGGAAGTCTGGTAGGGAAC+AGG 0.394819 5_1:+2965382 None:intergenic
TAAACACACTTCAATCCAAT+TGG 0.422548 5_1:+2965573 None:intergenic
TCTGCTTTCAAAAGGAAGTC+TGG 0.423594 5_1:+2965371 None:intergenic
AGACTTTACTCAGCACCAAT+TGG 0.431506 5_1:-2965588 Msa0711110:three_prime_UTR
GTGGCGATGGCTGTTATTGT+GGG 0.438443 5_1:+2966839 None:intergenic
CTGTGGTTTCTGCTTTCAAA+AGG 0.438538 5_1:+2965363 None:intergenic
TGTTATTGTGGGTGGATGGA+TGG 0.439183 5_1:+2966850 None:intergenic
AGGAATTTAACTTGTTAACT+AGG 0.439997 5_1:+2965418 None:intergenic
ACCACAAGGGTATCCGCCAC+CGG 0.446125 5_1:-2966591 Msa0711110:CDS
CACAACAATTCAAGCGGCCC+TGG 0.453802 5_1:-2966425 Msa0711110:CDS
CCTTGTTGCGGTGGGTAACC+TGG 0.454558 5_1:+2966542 None:intergenic
TCCTTTCCCTCAGATGGTGG+TGG 0.458781 5_1:+2966653 None:intergenic
GCCCTGGTTGTTTAGAAGGA+TGG 0.472180 5_1:-2966409 Msa0711110:intron
TATCCTTCCTTTCCCTCAGA+TGG 0.481762 5_1:+2966647 None:intergenic
TGAGGAGGATACCCTTGTGC+TGG 0.485336 5_1:+2966500 None:intergenic
CCTTGTGCTGGGTACGGTGG+TGG 0.485759 5_1:+2966512 None:intergenic
GGTGGCGATGGCTGTTATTG+TGG 0.488812 5_1:+2966838 None:intergenic
GGTGGAGGTTGAGCGTATTG+AGG 0.489568 5_1:+2966467 None:intergenic
AAATTTGGCAGAGTTGTCCT+TGG 0.508021 5_1:+2965451 None:intergenic
CTTTCAAAAGGAAGTCTGGT+AGG 0.513498 5_1:+2965375 None:intergenic
AGTAAAGTCTTCTTAGAAGC+AGG 0.517983 5_1:+2965601 None:intergenic
TGCGGTGGGTAACCTGGTGG+TGG 0.520361 5_1:+2966548 None:intergenic
AATTTGGCAGAGTTGTCCTT+GGG 0.524005 5_1:+2965452 None:intergenic
TTGTGTACATGTTGAGGAGG+TGG 0.526514 5_1:+2966449 None:intergenic
TGTGCTGGGTACGGTGGTGG+AGG 0.526803 5_1:+2966515 None:intergenic
TATCCTTGCGGTGGATATCC+CGG 0.527607 5_1:+2966572 None:intergenic
CCTTCCTTTCCCTCAGATGG+TGG 0.531297 5_1:+2966650 None:intergenic
TACCCTTGTGGTGGATAACC+TGG 0.533442 5_1:+2966602 None:intergenic
GGATACCCTTGTGCTGGGTA+CGG 0.535216 5_1:+2966506 None:intergenic
TATTGACTCATTGGTGGCGA+TGG 0.535588 5_1:+2966826 None:intergenic
GGAGGATATCCTTGTTGCGG+TGG 0.540273 5_1:+2966533 None:intergenic
TCCACCACCATCTGAGGGAA+AGG 0.552545 5_1:-2966654 Msa0711110:CDS
CCACCACCGTACCCAGCACA+AGG 0.553983 5_1:-2966512 Msa0711110:CDS
TGCGGTGGATATCCCGGTGG+CGG 0.554075 5_1:+2966578 None:intergenic
TGGCTGTTATTGTGGGTGGA+TGG 0.554649 5_1:+2966846 None:intergenic
AGGTTATCCACCACCATCTG+AGG 0.559673 5_1:-2966660 Msa0711110:CDS
TGTGGTGGATAACCTGGTGG+TGG 0.559925 5_1:+2966608 None:intergenic
TGTACATGTTGAGGAGGTGG+AGG 0.561303 5_1:+2966452 None:intergenic
TATTGAGGAGGAGCATATTG+AGG 0.561401 5_1:+2966482 None:intergenic
TTGTGATTGTGTACATGTTG+AGG 0.564685 5_1:+2966443 None:intergenic
GCGATGGCTGTTATTGTGGG+TGG 0.572094 5_1:+2966842 None:intergenic
TGATTGTATTGACTCATTGG+TGG 0.573418 5_1:+2966820 None:intergenic
ACGTATGTACCTTGAGGCGG+TGG 0.577923 5_1:+2966775 None:intergenic
CCACAAGGGTATCCGCCACC+GGG 0.580144 5_1:-2966590 Msa0711110:CDS
AGCAACGACGTGTGATGATG+AGG 0.585070 5_1:-2966974 Msa0711110:five_prime_UTR
TGAGGAGGAGCATATTGAGG+AGG 0.587033 5_1:+2966485 None:intergenic
GAACAGGGAATTGAAGAACT+AGG 0.587934 5_1:+2965398 None:intergenic
AACCAACCAATTAATAATGG+GGG 0.589221 5_1:+2966877 None:intergenic
CCACCATCTGAGGGAAAGGA+AGG 0.589362 5_1:-2966650 Msa0711110:CDS
AGGAAGTCTGGTAGGGAACA+GGG 0.589572 5_1:+2965383 None:intergenic
GAGGAGGATACCCTTGTGCT+GGG 0.590232 5_1:+2966501 None:intergenic
TACCATCCTTCTAAACAACC+AGG 0.592914 5_1:+2966407 None:intergenic
CCCGGTGGCGGATACCCTTG+TGG 0.593123 5_1:+2966590 None:intergenic
CACAATCACAACAATTCAAG+CGG 0.593493 5_1:-2966431 Msa0711110:CDS
TTTCAAAAGGAAGTCTGGTA+GGG 0.597848 5_1:+2965376 None:intergenic
TAACCAACCAATTAATAATG+GGG 0.598437 5_1:+2966876 None:intergenic
ATACAATCAGCAACAACCAC+CGG 0.601122 5_1:-2966806 Msa0711110:CDS
ATATGAACTAATGCTTCCCA+AGG 0.609643 5_1:-2965468 Msa0711110:three_prime_UTR
CCACAAGGGTATCCACCACC+AGG 0.610047 5_1:-2966620 Msa0711110:CDS
GGCGGTGGAACTCCGACCGG+TGG 0.610943 5_1:+2966790 None:intergenic
CCAGGTTACCCACCGCAACA+AGG 0.612688 5_1:-2966542 Msa0711110:CDS
CCGCAAGGATATCCACCACC+AGG 0.612716 5_1:-2966560 Msa0711110:CDS
TGATTGTGTACATGTTGAGG+AGG 0.613494 5_1:+2966446 None:intergenic
GAAAAGAAACATTCAACAAG+GGG 0.613749 5_1:+2965502 None:intergenic
TACCCTTGTGCTGGGTACGG+TGG 0.619607 5_1:+2966509 None:intergenic
CCACCAGGTTATCCACCACA+AGG 0.620890 5_1:-2966605 Msa0711110:CDS
TGAAAAGAAACATTCAACAA+GGG 0.621294 5_1:+2965501 None:intergenic
TGAGGCGGTGGAACTCCGAC+CGG 0.621449 5_1:+2966787 None:intergenic
GAGGATATCCTTGTTGCGGT+GGG 0.626505 5_1:+2966534 None:intergenic
ATGAAAAGAAACATTCAACA+AGG 0.629147 5_1:+2965500 None:intergenic
GTCGGAGTTCCACCGCCTCA+AGG 0.629477 5_1:-2966784 Msa0711110:intron
GGTTATCCACCACCATCTGA+GGG 0.630213 5_1:-2966659 Msa0711110:CDS
GGTGGAGGATATCCTTGTTG+CGG 0.632248 5_1:+2966530 None:intergenic
CCACCGGGATATCCACCGCA+AGG 0.639006 5_1:-2966575 Msa0711110:CDS
GGAGGTTGAGCGTATTGAGG+AGG 0.640612 5_1:+2966470 None:intergenic
GGTGGCGGATACCCTTGTGG+TGG 0.642616 5_1:+2966593 None:intergenic
ACCAACCAATTAATAATGGG+GGG 0.648041 5_1:+2966878 None:intergenic
GGTGGTGGATATCCTTGCGG+TGG 0.654213 5_1:+2966563 None:intergenic
AAGGAAGGATATCCTCCACA+AGG 0.665100 5_1:-2966635 Msa0711110:CDS
CCTGGTGGTGGATATCCTTG+CGG 0.684642 5_1:+2966560 None:intergenic
CCTGGTGGTGGATACCCTTG+TGG 0.689600 5_1:+2966620 None:intergenic
CACCACCGTACCCAGCACAA+GGG 0.689874 5_1:-2966511 Msa0711110:CDS
AATCAGCAACAACCACCGGT+CGG 0.690924 5_1:-2966802 Msa0711110:CDS
ATTACGTATGTACCTTGAGG+CGG 0.695338 5_1:+2966772 None:intergenic
ACCATCCTTCTAAACAACCA+GGG 0.698603 5_1:+2966408 None:intergenic
TGTTGCGGTGGGTAACCTGG+TGG 0.703184 5_1:+2966545 None:intergenic
TGAATGAATGAATGAACGAG+TGG 0.716730 5_1:+2966918 None:intergenic
GGTGGTGGATACCCTTGTGG+AGG 0.717402 5_1:+2966623 None:intergenic
CCTTGTGGTGGATAACCTGG+TGG 0.718448 5_1:+2966605 None:intergenic
CACCAGGTTATCCACCACAA+GGG 0.720224 5_1:-2966604 Msa0711110:CDS
AGGAAGGATATCCTCCACAA+GGG 0.729865 5_1:-2966634 Msa0711110:CDS
CCTTGCGGTGGATATCCCGG+TGG 0.742293 5_1:+2966575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATGATTTATTTATGAAT+AGG - chr5_1:2965656-2965675 Msa0711110:intron 10.0%
!! TTTATGATTTATTTATGAAT+AGG - chr5_1:2965656-2965675 Msa0711110:intron 10.0%
!! AAGATAGAAACAAATATATT+TGG - chr5_1:2966242-2966261 Msa0711110:intron 15.0%
!! AAGATAGAAACAAATATATT+TGG - chr5_1:2966242-2966261 Msa0711110:intron 15.0%
!! ATAACCAACCAATTAATAAT+GGG + chr5_1:2965464-2965483 None:intergenic 20.0%
!! ATAACCAACCAATTAATAAT+GGG + chr5_1:2965464-2965483 None:intergenic 20.0%
! TAACCAACCAATTAATAATG+GGG + chr5_1:2965463-2965482 None:intergenic 25.0%
! GATAACCAACCAATTAATAA+TGG + chr5_1:2965465-2965484 None:intergenic 25.0%
! ACACACATATAAAACATCAA+AGG + chr5_1:2966076-2966095 None:intergenic 25.0%
! CTGATGAGAATCATAAATAT+TGG + chr5_1:2966444-2966463 None:intergenic 25.0%
! GTGCAAAATTTCAATTTGAT+AGG + chr5_1:2966523-2966542 None:intergenic 25.0%
! ATATTAAGAATTACCAGCAA+TGG + chr5_1:2966549-2966568 None:intergenic 25.0%
! TGAAAAGAAACATTCAACAA+GGG + chr5_1:2966838-2966857 None:intergenic 25.0%
! ATGAAAAGAAACATTCAACA+AGG + chr5_1:2966839-2966858 None:intergenic 25.0%
!!! AGGAATTTAACTTGTTAACT+AGG + chr5_1:2966921-2966940 None:intergenic 25.0%
! TAACCAACCAATTAATAATG+GGG + chr5_1:2965463-2965482 None:intergenic 25.0%
! GATAACCAACCAATTAATAA+TGG + chr5_1:2965465-2965484 None:intergenic 25.0%
! ACACACATATAAAACATCAA+AGG + chr5_1:2966076-2966095 None:intergenic 25.0%
! CTGATGAGAATCATAAATAT+TGG + chr5_1:2966444-2966463 None:intergenic 25.0%
! GTGCAAAATTTCAATTTGAT+AGG + chr5_1:2966523-2966542 None:intergenic 25.0%
! ATATTAAGAATTACCAGCAA+TGG + chr5_1:2966549-2966568 None:intergenic 25.0%
! TGAAAAGAAACATTCAACAA+GGG + chr5_1:2966838-2966857 None:intergenic 25.0%
! ATGAAAAGAAACATTCAACA+AGG + chr5_1:2966839-2966858 None:intergenic 25.0%
!!! AGGAATTTAACTTGTTAACT+AGG + chr5_1:2966921-2966940 None:intergenic 25.0%
AACCAACCAATTAATAATGG+GGG + chr5_1:2965462-2965481 None:intergenic 30.0%
TTAAGAATGAAAGGAATGCA+TGG + chr5_1:2965995-2966014 None:intergenic 30.0%
CACAAGAGATTAAGAATGAA+AGG + chr5_1:2966004-2966023 None:intergenic 30.0%
TATCTTCGATCTCATGTATA+TGG - chr5_1:2966136-2966155 Msa0711110:intron 30.0%
TCTTATTCATAAGATGAGAC+CGG - chr5_1:2966212-2966231 Msa0711110:intron 30.0%
! TGTTTCTATCTTACTTCATC+CGG + chr5_1:2966234-2966253 None:intergenic 30.0%
AACAAATATATTTGGCGTCA+TGG - chr5_1:2966250-2966269 Msa0711110:intron 30.0%
!!! TCCTATCTAGTTTTTGGTTT+GGG + chr5_1:2966316-2966335 None:intergenic 30.0%
AATACTTCATGTTCATGTCA+TGG - chr5_1:2966578-2966597 Msa0711110:CDS 30.0%
ACTTGTTTGCGTTTGTATAT+TGG - chr5_1:2966672-2966691 Msa0711110:intron 30.0%
TAAACACACTTCAATCCAAT+TGG + chr5_1:2966766-2966785 None:intergenic 30.0%
GAAAAGAAACATTCAACAAG+GGG + chr5_1:2966837-2966856 None:intergenic 30.0%
AACCAACCAATTAATAATGG+GGG + chr5_1:2965462-2965481 None:intergenic 30.0%
TTAAGAATGAAAGGAATGCA+TGG + chr5_1:2965995-2966014 None:intergenic 30.0%
CACAAGAGATTAAGAATGAA+AGG + chr5_1:2966004-2966023 None:intergenic 30.0%
TATCTTCGATCTCATGTATA+TGG - chr5_1:2966136-2966155 Msa0711110:intron 30.0%
TCTTATTCATAAGATGAGAC+CGG - chr5_1:2966212-2966231 Msa0711110:intron 30.0%
! TGTTTCTATCTTACTTCATC+CGG + chr5_1:2966234-2966253 None:intergenic 30.0%
AACAAATATATTTGGCGTCA+TGG - chr5_1:2966250-2966269 Msa0711110:intron 30.0%
!!! TCCTATCTAGTTTTTGGTTT+GGG + chr5_1:2966316-2966335 None:intergenic 30.0%
AATACTTCATGTTCATGTCA+TGG - chr5_1:2966578-2966597 Msa0711110:CDS 30.0%
ACTTGTTTGCGTTTGTATAT+TGG - chr5_1:2966672-2966691 Msa0711110:intron 30.0%
TAAACACACTTCAATCCAAT+TGG + chr5_1:2966766-2966785 None:intergenic 30.0%
GAAAAGAAACATTCAACAAG+GGG + chr5_1:2966837-2966856 None:intergenic 30.0%
TGAATGAATGAATGAACGAG+TGG + chr5_1:2965421-2965440 None:intergenic 35.0%
! ACCAACCAATTAATAATGGG+GGG + chr5_1:2965461-2965480 None:intergenic 35.0%
!! TGATTGTATTGACTCATTGG+TGG + chr5_1:2965519-2965538 None:intergenic 35.0%
!! TGCTGATTGTATTGACTCAT+TGG + chr5_1:2965522-2965541 None:intergenic 35.0%
ATGATTACGTATGTACCTTG+AGG + chr5_1:2965570-2965589 None:intergenic 35.0%
TTGTGATTGTGTACATGTTG+AGG + chr5_1:2965896-2965915 None:intergenic 35.0%
CACAATCACAACAATTCAAG+CGG - chr5_1:2965905-2965924 Msa0711110:intron 35.0%
TTGAAATGCGTGTGAATAGT+AGG - chr5_1:2966100-2966119 Msa0711110:intron 35.0%
! TATGGTGTCAGTAATCTGTT+AGG - chr5_1:2966275-2966294 Msa0711110:intron 35.0%
!!! CTCCTATCTAGTTTTTGGTT+TGG + chr5_1:2966317-2966336 None:intergenic 35.0%
TAAAACACACGAAGTTTGTG+TGG + chr5_1:2966378-2966397 None:intergenic 35.0%
! AATTTTGCACATTCCATTGC+TGG - chr5_1:2966533-2966552 Msa0711110:CDS 35.0%
AGTAAAGTCTTCTTAGAAGC+AGG + chr5_1:2966738-2966757 None:intergenic 35.0%
ATATGAACTAATGCTTCCCA+AGG - chr5_1:2966868-2966887 Msa0711110:five_prime_UTR 35.0%
TTTCAAAAGGAAGTCTGGTA+GGG + chr5_1:2966963-2966982 None:intergenic 35.0%
TGAATGAATGAATGAACGAG+TGG + chr5_1:2965421-2965440 None:intergenic 35.0%
! ACCAACCAATTAATAATGGG+GGG + chr5_1:2965461-2965480 None:intergenic 35.0%
!! TGATTGTATTGACTCATTGG+TGG + chr5_1:2965519-2965538 None:intergenic 35.0%
!! TGCTGATTGTATTGACTCAT+TGG + chr5_1:2965522-2965541 None:intergenic 35.0%
ATGATTACGTATGTACCTTG+AGG + chr5_1:2965570-2965589 None:intergenic 35.0%
TTGTGATTGTGTACATGTTG+AGG + chr5_1:2965896-2965915 None:intergenic 35.0%
CACAATCACAACAATTCAAG+CGG - chr5_1:2965905-2965924 Msa0711110:intron 35.0%
TTGAAATGCGTGTGAATAGT+AGG - chr5_1:2966100-2966119 Msa0711110:intron 35.0%
! TATGGTGTCAGTAATCTGTT+AGG - chr5_1:2966275-2966294 Msa0711110:intron 35.0%
!!! CTCCTATCTAGTTTTTGGTT+TGG + chr5_1:2966317-2966336 None:intergenic 35.0%
TAAAACACACGAAGTTTGTG+TGG + chr5_1:2966378-2966397 None:intergenic 35.0%
! AATTTTGCACATTCCATTGC+TGG - chr5_1:2966533-2966552 Msa0711110:CDS 35.0%
AGTAAAGTCTTCTTAGAAGC+AGG + chr5_1:2966738-2966757 None:intergenic 35.0%
ATATGAACTAATGCTTCCCA+AGG - chr5_1:2966868-2966887 Msa0711110:five_prime_UTR 35.0%
TTTCAAAAGGAAGTCTGGTA+GGG + chr5_1:2966963-2966982 None:intergenic 35.0%
ACCCCCCATTATTAATTGGT+TGG - chr5_1:2965457-2965476 Msa0711110:three_prime_UTR 40.0%
ATACAATCAGCAACAACCAC+CGG - chr5_1:2965530-2965549 Msa0711110:three_prime_UTR 40.0%
ATTACGTATGTACCTTGAGG+CGG + chr5_1:2965567-2965586 None:intergenic 40.0%
! TATTGAGGAGGAGCATATTG+AGG + chr5_1:2965857-2965876 None:intergenic 40.0%
TGATTGTGTACATGTTGAGG+AGG + chr5_1:2965893-2965912 None:intergenic 40.0%
ACCATCCTTCTAAACAACCA+GGG + chr5_1:2965931-2965950 None:intergenic 40.0%
TACCATCCTTCTAAACAACC+AGG + chr5_1:2965932-2965951 None:intergenic 40.0%
TTTGTCAAGCAGATCCGATT+CGG + chr5_1:2966041-2966060 None:intergenic 40.0%
ATATTTGGCGTCATGGCATA+TGG - chr5_1:2966257-2966276 Msa0711110:intron 40.0%
GCCCAAACCAAAAACTAGAT+AGG - chr5_1:2966312-2966331 Msa0711110:intron 40.0%
!!! AGGCTCTCCTATCTAGTTTT+TGG + chr5_1:2966322-2966341 None:intergenic 40.0%
AACTAGATAGGAGAGCCTAA+TGG - chr5_1:2966324-2966343 Msa0711110:intron 40.0%
! TGCTCTTAGGTTGCAAATCA+AGG - chr5_1:2966352-2966371 Msa0711110:intron 40.0%
CATGTTCATGTCATGGTAGA+CGG - chr5_1:2966585-2966604 Msa0711110:CDS 40.0%
AACGCAAACAAGTTAGTGAG+TGG + chr5_1:2966665-2966684 None:intergenic 40.0%
CTTAGAAGCAGGCATCTAAT+AGG + chr5_1:2966727-2966746 None:intergenic 40.0%
AGACTTTACTCAGCACCAAT+TGG - chr5_1:2966748-2966767 Msa0711110:intron 40.0%
AATTTGGCAGAGTTGTCCTT+GGG + chr5_1:2966887-2966906 None:intergenic 40.0%
AAATTTGGCAGAGTTGTCCT+TGG + chr5_1:2966888-2966907 None:intergenic 40.0%
GACAACTCTGCCAAATTTAC+AGG - chr5_1:2966890-2966909 Msa0711110:five_prime_UTR 40.0%
CTAGGCAAAGCCTGTAAATT+TGG + chr5_1:2966903-2966922 None:intergenic 40.0%
GAACAGGGAATTGAAGAACT+AGG + chr5_1:2966941-2966960 None:intergenic 40.0%
CTTTCAAAAGGAAGTCTGGT+AGG + chr5_1:2966964-2966983 None:intergenic 40.0%
TCTGCTTTCAAAAGGAAGTC+TGG + chr5_1:2966968-2966987 None:intergenic 40.0%
CTGTGGTTTCTGCTTTCAAA+AGG + chr5_1:2966976-2966995 None:intergenic 40.0%
ACCCCCCATTATTAATTGGT+TGG - chr5_1:2965457-2965476 Msa0711110:three_prime_UTR 40.0%
ATACAATCAGCAACAACCAC+CGG - chr5_1:2965530-2965549 Msa0711110:three_prime_UTR 40.0%
ATTACGTATGTACCTTGAGG+CGG + chr5_1:2965567-2965586 None:intergenic 40.0%
! TATTGAGGAGGAGCATATTG+AGG + chr5_1:2965857-2965876 None:intergenic 40.0%
TGATTGTGTACATGTTGAGG+AGG + chr5_1:2965893-2965912 None:intergenic 40.0%
ACCATCCTTCTAAACAACCA+GGG + chr5_1:2965931-2965950 None:intergenic 40.0%
TACCATCCTTCTAAACAACC+AGG + chr5_1:2965932-2965951 None:intergenic 40.0%
TTTGTCAAGCAGATCCGATT+CGG + chr5_1:2966041-2966060 None:intergenic 40.0%
ATATTTGGCGTCATGGCATA+TGG - chr5_1:2966257-2966276 Msa0711110:intron 40.0%
GCCCAAACCAAAAACTAGAT+AGG - chr5_1:2966312-2966331 Msa0711110:intron 40.0%
!!! AGGCTCTCCTATCTAGTTTT+TGG + chr5_1:2966322-2966341 None:intergenic 40.0%
AACTAGATAGGAGAGCCTAA+TGG - chr5_1:2966324-2966343 Msa0711110:intron 40.0%
! TGCTCTTAGGTTGCAAATCA+AGG - chr5_1:2966352-2966371 Msa0711110:intron 40.0%
CATGTTCATGTCATGGTAGA+CGG - chr5_1:2966585-2966604 Msa0711110:CDS 40.0%
AACGCAAACAAGTTAGTGAG+TGG + chr5_1:2966665-2966684 None:intergenic 40.0%
CTTAGAAGCAGGCATCTAAT+AGG + chr5_1:2966727-2966746 None:intergenic 40.0%
AGACTTTACTCAGCACCAAT+TGG - chr5_1:2966748-2966767 Msa0711110:intron 40.0%
AATTTGGCAGAGTTGTCCTT+GGG + chr5_1:2966887-2966906 None:intergenic 40.0%
AAATTTGGCAGAGTTGTCCT+TGG + chr5_1:2966888-2966907 None:intergenic 40.0%
GACAACTCTGCCAAATTTAC+AGG - chr5_1:2966890-2966909 Msa0711110:five_prime_UTR 40.0%
CTAGGCAAAGCCTGTAAATT+TGG + chr5_1:2966903-2966922 None:intergenic 40.0%
GAACAGGGAATTGAAGAACT+AGG + chr5_1:2966941-2966960 None:intergenic 40.0%
CTTTCAAAAGGAAGTCTGGT+AGG + chr5_1:2966964-2966983 None:intergenic 40.0%
TCTGCTTTCAAAAGGAAGTC+TGG + chr5_1:2966968-2966987 None:intergenic 40.0%
CTGTGGTTTCTGCTTTCAAA+AGG + chr5_1:2966976-2966995 None:intergenic 40.0%
GCACACCCCCCATTATTAAT+TGG - chr5_1:2965453-2965472 Msa0711110:three_prime_UTR 45.0%
TGTTATTGTGGGTGGATGGA+TGG + chr5_1:2965489-2965508 None:intergenic 45.0%
!! TATTGACTCATTGGTGGCGA+TGG + chr5_1:2965513-2965532 None:intergenic 45.0%
TATCCTTCCTTTCCCTCAGA+TGG + chr5_1:2965692-2965711 None:intergenic 45.0%
AAGGAAGGATATCCTCCACA+AGG - chr5_1:2965701-2965720 Msa0711110:intron 45.0%
AGGAAGGATATCCTCCACAA+GGG - chr5_1:2965702-2965721 Msa0711110:intron 45.0%
TTGTGTACATGTTGAGGAGG+TGG + chr5_1:2965890-2965909 None:intergenic 45.0%
ATGCATGCATGGATGAGAGA+GGG + chr5_1:2965972-2965991 None:intergenic 45.0%
!! CCTAAGAGCACTAAGCCATT+AGG + chr5_1:2966342-2966361 None:intergenic 45.0%
CCTAATGGCTTAGTGCTCTT+AGG - chr5_1:2966339-2966358 Msa0711110:intron 45.0%
GCACACCCCCCATTATTAAT+TGG - chr5_1:2965453-2965472 Msa0711110:three_prime_UTR 45.0%
TGTTATTGTGGGTGGATGGA+TGG + chr5_1:2965489-2965508 None:intergenic 45.0%
!! TATTGACTCATTGGTGGCGA+TGG + chr5_1:2965513-2965532 None:intergenic 45.0%
TATCCTTCCTTTCCCTCAGA+TGG + chr5_1:2965692-2965711 None:intergenic 45.0%
AAGGAAGGATATCCTCCACA+AGG - chr5_1:2965701-2965720 Msa0711110:intron 45.0%
AGGAAGGATATCCTCCACAA+GGG - chr5_1:2965702-2965721 Msa0711110:intron 45.0%
TTGTGTACATGTTGAGGAGG+TGG + chr5_1:2965890-2965909 None:intergenic 45.0%
ATGCATGCATGGATGAGAGA+GGG + chr5_1:2965972-2965991 None:intergenic 45.0%
!! CCTAAGAGCACTAAGCCATT+AGG + chr5_1:2966342-2966361 None:intergenic 45.0%
CCTAATGGCTTAGTGCTCTT+AGG - chr5_1:2966339-2966358 Msa0711110:intron 45.0%
! AGCAACGACGTGTGATGATG+AGG - chr5_1:2965362-2965381 Msa0711110:three_prime_UTR 50.0%
! TAATAATGGGGGGTGTGCGT+GGG + chr5_1:2965451-2965470 None:intergenic 50.0%
! TTAATAATGGGGGGTGTGCG+TGG + chr5_1:2965452-2965471 None:intergenic 50.0%
TGGCTGTTATTGTGGGTGGA+TGG + chr5_1:2965493-2965512 None:intergenic 50.0%
GTGGCGATGGCTGTTATTGT+GGG + chr5_1:2965500-2965519 None:intergenic 50.0%
AATCAGCAACAACCACCGGT+CGG - chr5_1:2965534-2965553 Msa0711110:three_prime_UTR 50.0%
AGGTTATCCACCACCATCTG+AGG - chr5_1:2965676-2965695 Msa0711110:intron 50.0%
GGTTATCCACCACCATCTGA+GGG - chr5_1:2965677-2965696 Msa0711110:intron 50.0%
CACCAGGTTATCCACCACAA+GGG - chr5_1:2965732-2965751 Msa0711110:intron 50.0%
!! TACCCTTGTGGTGGATAACC+TGG + chr5_1:2965737-2965756 None:intergenic 50.0%
TATCCTTGCGGTGGATATCC+CGG + chr5_1:2965767-2965786 None:intergenic 50.0%
GAGGATATCCTTGTTGCGGT+GGG + chr5_1:2965805-2965824 None:intergenic 50.0%
GGTGGAGGATATCCTTGTTG+CGG + chr5_1:2965809-2965828 None:intergenic 50.0%
! TGAGGAGGAGCATATTGAGG+AGG + chr5_1:2965854-2965873 None:intergenic 50.0%
TGTACATGTTGAGGAGGTGG+AGG + chr5_1:2965887-2965906 None:intergenic 50.0%
GCCCTGGTTGTTTAGAAGGA+TGG - chr5_1:2965927-2965946 Msa0711110:intron 50.0%
GATGCATGCATGGATGAGAG+AGG + chr5_1:2965973-2965992 None:intergenic 50.0%
GGAATGCATGGATGCATGCA+TGG + chr5_1:2965983-2966002 None:intergenic 50.0%
AGGAAGTCTGGTAGGGAACA+GGG + chr5_1:2966956-2966975 None:intergenic 50.0%
AAGGAAGTCTGGTAGGGAAC+AGG + chr5_1:2966957-2966976 None:intergenic 50.0%
! AGCAACGACGTGTGATGATG+AGG - chr5_1:2965362-2965381 Msa0711110:three_prime_UTR 50.0%
! TAATAATGGGGGGTGTGCGT+GGG + chr5_1:2965451-2965470 None:intergenic 50.0%
! TTAATAATGGGGGGTGTGCG+TGG + chr5_1:2965452-2965471 None:intergenic 50.0%
TGGCTGTTATTGTGGGTGGA+TGG + chr5_1:2965493-2965512 None:intergenic 50.0%
GTGGCGATGGCTGTTATTGT+GGG + chr5_1:2965500-2965519 None:intergenic 50.0%
AATCAGCAACAACCACCGGT+CGG - chr5_1:2965534-2965553 Msa0711110:three_prime_UTR 50.0%
AGGTTATCCACCACCATCTG+AGG - chr5_1:2965676-2965695 Msa0711110:intron 50.0%
GGTTATCCACCACCATCTGA+GGG - chr5_1:2965677-2965696 Msa0711110:intron 50.0%
CACCAGGTTATCCACCACAA+GGG - chr5_1:2965732-2965751 Msa0711110:intron 50.0%
!! TACCCTTGTGGTGGATAACC+TGG + chr5_1:2965737-2965756 None:intergenic 50.0%
TATCCTTGCGGTGGATATCC+CGG + chr5_1:2965767-2965786 None:intergenic 50.0%
GAGGATATCCTTGTTGCGGT+GGG + chr5_1:2965805-2965824 None:intergenic 50.0%
GGTGGAGGATATCCTTGTTG+CGG + chr5_1:2965809-2965828 None:intergenic 50.0%
! TGAGGAGGAGCATATTGAGG+AGG + chr5_1:2965854-2965873 None:intergenic 50.0%
TGTACATGTTGAGGAGGTGG+AGG + chr5_1:2965887-2965906 None:intergenic 50.0%
GCCCTGGTTGTTTAGAAGGA+TGG - chr5_1:2965927-2965946 Msa0711110:intron 50.0%
GATGCATGCATGGATGAGAG+AGG + chr5_1:2965973-2965992 None:intergenic 50.0%
GGAATGCATGGATGCATGCA+TGG + chr5_1:2965983-2966002 None:intergenic 50.0%
AGGAAGTCTGGTAGGGAACA+GGG + chr5_1:2966956-2966975 None:intergenic 50.0%
AAGGAAGTCTGGTAGGGAAC+AGG + chr5_1:2966957-2966976 None:intergenic 50.0%
GCGATGGCTGTTATTGTGGG+TGG + chr5_1:2965497-2965516 None:intergenic 55.0%
GGTGGCGATGGCTGTTATTG+TGG + chr5_1:2965501-2965520 None:intergenic 55.0%
ACGTATGTACCTTGAGGCGG+TGG + chr5_1:2965564-2965583 None:intergenic 55.0%
TCCACCACCATCTGAGGGAA+AGG - chr5_1:2965682-2965701 Msa0711110:intron 55.0%
! TCCTTTCCCTCAGATGGTGG+TGG + chr5_1:2965686-2965705 None:intergenic 55.0%
CCTTCCTTTCCCTCAGATGG+TGG + chr5_1:2965689-2965708 None:intergenic 55.0%
CCACCATCTGAGGGAAAGGA+AGG - chr5_1:2965686-2965705 Msa0711110:intron 55.0%
!! TGTGGTGGATAACCTGGTGG+TGG + chr5_1:2965731-2965750 None:intergenic 55.0%
!! CCTTGTGGTGGATAACCTGG+TGG + chr5_1:2965734-2965753 None:intergenic 55.0%
CCACCAGGTTATCCACCACA+AGG - chr5_1:2965731-2965750 Msa0711110:intron 55.0%
!! CCTGGTGGTGGATATCCTTG+CGG + chr5_1:2965779-2965798 None:intergenic 55.0%
GGAGGATATCCTTGTTGCGG+TGG + chr5_1:2965806-2965825 None:intergenic 55.0%
GGATACCCTTGTGCTGGGTA+CGG + chr5_1:2965833-2965852 None:intergenic 55.0%
GAGGAGGATACCCTTGTGCT+GGG + chr5_1:2965838-2965857 None:intergenic 55.0%
TGAGGAGGATACCCTTGTGC+TGG + chr5_1:2965839-2965858 None:intergenic 55.0%
GGAGGTTGAGCGTATTGAGG+AGG + chr5_1:2965869-2965888 None:intergenic 55.0%
GGTGGAGGTTGAGCGTATTG+AGG + chr5_1:2965872-2965891 None:intergenic 55.0%
CACAACAATTCAAGCGGCCC+TGG - chr5_1:2965911-2965930 Msa0711110:intron 55.0%
AGCGGCCCTGGTTGTTTAGA+AGG - chr5_1:2965923-2965942 Msa0711110:intron 55.0%
!! TCAAGCAGATCCGATTCGGC+GGG + chr5_1:2966037-2966056 None:intergenic 55.0%
!! GTCAAGCAGATCCGATTCGG+CGG + chr5_1:2966038-2966057 None:intergenic 55.0%
GCGATGGCTGTTATTGTGGG+TGG + chr5_1:2965497-2965516 None:intergenic 55.0%
GGTGGCGATGGCTGTTATTG+TGG + chr5_1:2965501-2965520 None:intergenic 55.0%
ACGTATGTACCTTGAGGCGG+TGG + chr5_1:2965564-2965583 None:intergenic 55.0%
TCCACCACCATCTGAGGGAA+AGG - chr5_1:2965682-2965701 Msa0711110:intron 55.0%
! TCCTTTCCCTCAGATGGTGG+TGG + chr5_1:2965686-2965705 None:intergenic 55.0%
CCTTCCTTTCCCTCAGATGG+TGG + chr5_1:2965689-2965708 None:intergenic 55.0%
CCACCATCTGAGGGAAAGGA+AGG - chr5_1:2965686-2965705 Msa0711110:intron 55.0%
!! TGTGGTGGATAACCTGGTGG+TGG + chr5_1:2965731-2965750 None:intergenic 55.0%
!! CCTTGTGGTGGATAACCTGG+TGG + chr5_1:2965734-2965753 None:intergenic 55.0%
CCACCAGGTTATCCACCACA+AGG - chr5_1:2965731-2965750 Msa0711110:intron 55.0%
!! CCTGGTGGTGGATATCCTTG+CGG + chr5_1:2965779-2965798 None:intergenic 55.0%
GGAGGATATCCTTGTTGCGG+TGG + chr5_1:2965806-2965825 None:intergenic 55.0%
GGATACCCTTGTGCTGGGTA+CGG + chr5_1:2965833-2965852 None:intergenic 55.0%
GAGGAGGATACCCTTGTGCT+GGG + chr5_1:2965838-2965857 None:intergenic 55.0%
TGAGGAGGATACCCTTGTGC+TGG + chr5_1:2965839-2965858 None:intergenic 55.0%
GGAGGTTGAGCGTATTGAGG+AGG + chr5_1:2965869-2965888 None:intergenic 55.0%
GGTGGAGGTTGAGCGTATTG+AGG + chr5_1:2965872-2965891 None:intergenic 55.0%
CACAACAATTCAAGCGGCCC+TGG - chr5_1:2965911-2965930 Msa0711110:intron 55.0%
AGCGGCCCTGGTTGTTTAGA+AGG - chr5_1:2965923-2965942 Msa0711110:intron 55.0%
!! TCAAGCAGATCCGATTCGGC+GGG + chr5_1:2966037-2966056 None:intergenic 55.0%
!! GTCAAGCAGATCCGATTCGG+CGG + chr5_1:2966038-2966057 None:intergenic 55.0%
!! GGTGGTGGATACCCTTGTGG+AGG + chr5_1:2965716-2965735 None:intergenic 60.0%
!! CCTGGTGGTGGATACCCTTG+TGG + chr5_1:2965719-2965738 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+AGG - chr5_1:2965716-2965735 Msa0711110:intron 60.0%
!! ACCACAAGGGTATCCGCCAC+CGG - chr5_1:2965745-2965764 Msa0711110:intron 60.0%
!! GGTGGTGGATATCCTTGCGG+TGG + chr5_1:2965776-2965795 None:intergenic 60.0%
CCGCAAGGATATCCACCACC+AGG - chr5_1:2965776-2965795 Msa0711110:intron 60.0%
TGTTGCGGTGGGTAACCTGG+TGG + chr5_1:2965794-2965813 None:intergenic 60.0%
CCTTGTTGCGGTGGGTAACC+TGG + chr5_1:2965797-2965816 None:intergenic 60.0%
CCAGGTTACCCACCGCAACA+AGG - chr5_1:2965794-2965813 Msa0711110:intron 60.0%
CACCACCGTACCCAGCACAA+GGG - chr5_1:2965825-2965844 Msa0711110:intron 60.0%
TACCCTTGTGCTGGGTACGG+TGG + chr5_1:2965830-2965849 None:intergenic 60.0%
TCTCGTTCTGCCCGCCGAAT+CGG - chr5_1:2966024-2966043 Msa0711110:intron 60.0%
!! GGTGGTGGATACCCTTGTGG+AGG + chr5_1:2965716-2965735 None:intergenic 60.0%
!! CCTGGTGGTGGATACCCTTG+TGG + chr5_1:2965719-2965738 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+AGG - chr5_1:2965716-2965735 Msa0711110:intron 60.0%
!! ACCACAAGGGTATCCGCCAC+CGG - chr5_1:2965745-2965764 Msa0711110:intron 60.0%
!! GGTGGTGGATATCCTTGCGG+TGG + chr5_1:2965776-2965795 None:intergenic 60.0%
CCGCAAGGATATCCACCACC+AGG - chr5_1:2965776-2965795 Msa0711110:intron 60.0%
TGTTGCGGTGGGTAACCTGG+TGG + chr5_1:2965794-2965813 None:intergenic 60.0%
CCTTGTTGCGGTGGGTAACC+TGG + chr5_1:2965797-2965816 None:intergenic 60.0%
CCAGGTTACCCACCGCAACA+AGG - chr5_1:2965794-2965813 Msa0711110:intron 60.0%
CACCACCGTACCCAGCACAA+GGG - chr5_1:2965825-2965844 Msa0711110:intron 60.0%
TACCCTTGTGCTGGGTACGG+TGG + chr5_1:2965830-2965849 None:intergenic 60.0%
TCTCGTTCTGCCCGCCGAAT+CGG - chr5_1:2966024-2966043 Msa0711110:intron 60.0%
! TAATGGGGGGTGTGCGTGGG+TGG + chr5_1:2965448-2965467 None:intergenic 65.0%
TGAGGCGGTGGAACTCCGAC+CGG + chr5_1:2965552-2965571 None:intergenic 65.0%
GTCGGAGTTCCACCGCCTCA+AGG - chr5_1:2965552-2965571 Msa0711110:three_prime_UTR 65.0%
!! GGTGGCGGATACCCTTGTGG+TGG + chr5_1:2965746-2965765 None:intergenic 65.0%
!! CCACAAGGGTATCCGCCACC+GGG - chr5_1:2965746-2965765 Msa0711110:intron 65.0%
TGCGGTGGATATCCCGGTGG+CGG + chr5_1:2965761-2965780 None:intergenic 65.0%
CCTTGCGGTGGATATCCCGG+TGG + chr5_1:2965764-2965783 None:intergenic 65.0%
CCACCGGGATATCCACCGCA+AGG - chr5_1:2965761-2965780 Msa0711110:intron 65.0%
TGCGGTGGGTAACCTGGTGG+TGG + chr5_1:2965791-2965810 None:intergenic 65.0%
! TGTGCTGGGTACGGTGGTGG+AGG + chr5_1:2965824-2965843 None:intergenic 65.0%
CCTTGTGCTGGGTACGGTGG+TGG + chr5_1:2965827-2965846 None:intergenic 65.0%
CCACCACCGTACCCAGCACA+AGG - chr5_1:2965824-2965843 Msa0711110:intron 65.0%
! TAATGGGGGGTGTGCGTGGG+TGG + chr5_1:2965448-2965467 None:intergenic 65.0%
TGAGGCGGTGGAACTCCGAC+CGG + chr5_1:2965552-2965571 None:intergenic 65.0%
GTCGGAGTTCCACCGCCTCA+AGG - chr5_1:2965552-2965571 Msa0711110:three_prime_UTR 65.0%
!! GGTGGCGGATACCCTTGTGG+TGG + chr5_1:2965746-2965765 None:intergenic 65.0%
!! CCACAAGGGTATCCGCCACC+GGG - chr5_1:2965746-2965765 Msa0711110:intron 65.0%
TGCGGTGGATATCCCGGTGG+CGG + chr5_1:2965761-2965780 None:intergenic 65.0%
CCTTGCGGTGGATATCCCGG+TGG + chr5_1:2965764-2965783 None:intergenic 65.0%
CCACCGGGATATCCACCGCA+AGG - chr5_1:2965761-2965780 Msa0711110:intron 65.0%
TGCGGTGGGTAACCTGGTGG+TGG + chr5_1:2965791-2965810 None:intergenic 65.0%
! TGTGCTGGGTACGGTGGTGG+AGG + chr5_1:2965824-2965843 None:intergenic 65.0%
CCTTGTGCTGGGTACGGTGG+TGG + chr5_1:2965827-2965846 None:intergenic 65.0%
CCACCACCGTACCCAGCACA+AGG - chr5_1:2965824-2965843 Msa0711110:intron 65.0%
!! CCCGGTGGCGGATACCCTTG+TGG + chr5_1:2965749-2965768 None:intergenic 70.0%
!! CCCGGTGGCGGATACCCTTG+TGG + chr5_1:2965749-2965768 None:intergenic 70.0%
GGCGGTGGAACTCCGACCGG+TGG + chr5_1:2965549-2965568 None:intergenic 75.0%
GGCGGTGGAACTCCGACCGG+TGG + chr5_1:2965549-2965568 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 2965357 2967001 2965357 ID=Msa0711110;Name=Msa0711110
chr5_1 mRNA 2965357 2967001 2965357 ID=Msa0711110-mRNA-1;Parent=Msa0711110;Name=Msa0711110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=165|1|1|1|0.5|0.66|3|256|122
chr5_1 exon 2965357 2965658 2965357 ID=Msa0711110-mRNA-1:exon:989;Parent=Msa0711110-mRNA-1
chr5_1 exon 2966410 2966680 2966410 ID=Msa0711110-mRNA-1:exon:988;Parent=Msa0711110-mRNA-1
chr5_1 exon 2966785 2967001 2966785 ID=Msa0711110-mRNA-1:exon:987;Parent=Msa0711110-mRNA-1
chr5_1 five_prime_UTR 2966837 2967001 2966837 ID=Msa0711110-mRNA-1:five_prime_utr;Parent=Msa0711110-mRNA-1
chr5_1 CDS 2966785 2966836 2966785 ID=Msa0711110-mRNA-1:cds;Parent=Msa0711110-mRNA-1
chr5_1 CDS 2966410 2966680 2966410 ID=Msa0711110-mRNA-1:cds;Parent=Msa0711110-mRNA-1
chr5_1 CDS 2965613 2965658 2965613 ID=Msa0711110-mRNA-1:cds;Parent=Msa0711110-mRNA-1
chr5_1 three_prime_UTR 2965357 2965612 2965357 ID=Msa0711110-mRNA-1:three_prime_utr;Parent=Msa0711110-mRNA-1
Gene Sequence

>Msa0711110

ATGAGTCAATACAATCAGCAACAACCACCGGTCGGAGTTCCACCGCCTCAAGGTTATCCACCACCATCTGAGGGAAAGGAAGGATATCCTCCACAAGGGTATCCACCACCAGGTTATCCACCACAAGGGTATCCGCCACCGGGATATCCACCGCAAGGATATCCACCACCAGGTTACCCACCGCAACAAGGATATCCTCCACCACCGTACCCAGCACAAGGGTATCCTCCTCAATATGCTCCTCCTCAATACGCTCAACCTCCACCTCCTCAACATGTACACAATCACAACAATTCAAGCGGCCCTGGTTGTTTAGAAGGATGTTGTGCTGCTCTGTGCTGCTGCTGCCTATTAGATGCCTGCTTCTAA

Protein sequence

>Msa0711110

MSQYNQQQPPVGVPPPQGYPPPSEGKEGYPPQGYPPPGYPPQGYPPPGYPPQGYPPPGYPPQQGYPPPPYPAQGYPPQYAPPQYAQPPPPQHVHNHNNSSGPGCLEGCCAALCCCCLLDACF*