AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGCAAAGCCTGTAAATT+TGG 0.174955 5_4:+5214342 None:intergenic
GACAACTCTGCCAAATTTAC+AGG 0.248797 5_4:-5214352 Msa0832160:three_prime_UTR
GATAACCAACCAATTAATAA+TGG 0.300740 5_4:+5215768 None:intergenic
AGCGGCCCTGGTTGTTTAGA+AGG 0.307014 5_4:-5215323 Msa0832160:CDS
ATAACCAACCAATTAATAAT+GGG 0.356894 5_4:+5215769 None:intergenic
TGCTGATTGTATTGACTCAT+TGG 0.364781 5_4:+5215711 None:intergenic
CTTAGAAGCAGGCATCTAAT+AGG 0.377948 5_4:+5214518 None:intergenic
AAGGAAGTCTGGTAGGGAAC+AGG 0.394819 5_4:+5214288 None:intergenic
TAAACACACTTCAATCCAAT+TGG 0.422548 5_4:+5214479 None:intergenic
TCTGCTTTCAAAAGGAAGTC+TGG 0.423594 5_4:+5214277 None:intergenic
AGACTTTACTCAGCACCAAT+TGG 0.431506 5_4:-5214494 Msa0832160:three_prime_UTR
CTGTGGTTTCTGCTTTCAAA+AGG 0.438538 5_4:+5214269 None:intergenic
AGGAATTTAACTTGTTAACT+AGG 0.439997 5_4:+5214324 None:intergenic
ACCACAAGGGTATCCGCCAC+CGG 0.446125 5_4:-5215501 Msa0832160:CDS
CACAACAATTCAAGCGGCCC+TGG 0.453802 5_4:-5215335 Msa0832160:CDS
CCTTGTTGCGGTGGGTAACC+TGG 0.454558 5_4:+5215452 None:intergenic
TCCTTTCCCTCAGATGGTGG+TGG 0.458781 5_4:+5215563 None:intergenic
GCCCTGGTTGTTTAGAAGGA+TGG 0.472180 5_4:-5215319 Msa0832160:intron
TATCCTTCCTTTCCCTCAGA+TGG 0.481762 5_4:+5215557 None:intergenic
TGAGGAGGATACCCTTGTGC+TGG 0.485336 5_4:+5215410 None:intergenic
CCTTGTGCTGGGTACGGTGG+TGG 0.485759 5_4:+5215422 None:intergenic
GGTGGAGGTTGAGCGTATTG+AGG 0.489568 5_4:+5215377 None:intergenic
AAATTTGGCAGAGTTGTCCT+TGG 0.508021 5_4:+5214357 None:intergenic
TGTTATTGTGGGTGGATGGA+TGG 0.512539 5_4:+5215744 None:intergenic
CTTTCAAAAGGAAGTCTGGT+AGG 0.513498 5_4:+5214281 None:intergenic
AGTAAAGTCTTCTTAGAAGC+AGG 0.517983 5_4:+5214507 None:intergenic
TGCGGTGGGTAACCTGGTGG+TGG 0.520361 5_4:+5215458 None:intergenic
AATTTGGCAGAGTTGTCCTT+GGG 0.524005 5_4:+5214358 None:intergenic
TTGTGTACATGTTGAGGAGG+TGG 0.526514 5_4:+5215359 None:intergenic
TGTGCTGGGTACGGTGGTGG+AGG 0.526803 5_4:+5215425 None:intergenic
TATCCTTGCGGTGGATATCC+CGG 0.527607 5_4:+5215482 None:intergenic
CCTTCCTTTCCCTCAGATGG+TGG 0.531297 5_4:+5215560 None:intergenic
TACCCTTGTGGTGGATAACC+TGG 0.533442 5_4:+5215512 None:intergenic
GGATACCCTTGTGCTGGGTA+CGG 0.535216 5_4:+5215416 None:intergenic
GGAGGATATCCTTGTTGCGG+TGG 0.540273 5_4:+5215443 None:intergenic
GTGGCGATAGCTGTTATTGT+GGG 0.542724 5_4:+5215733 None:intergenic
ACGTATGCACCTTGAGGCGG+TGG 0.547125 5_4:+5215669 None:intergenic
TCCACCACCATCTGAGGGAA+AGG 0.552545 5_4:-5215564 Msa0832160:CDS
CCACCACCGTACCCAGCACA+AGG 0.553983 5_4:-5215422 Msa0832160:CDS
TGCGGTGGATATCCCGGTGG+CGG 0.554075 5_4:+5215488 None:intergenic
AGGTTATCCACCACCATCTG+AGG 0.559673 5_4:-5215570 Msa0832160:CDS
TGTGGTGGATAACCTGGTGG+TGG 0.559925 5_4:+5215518 None:intergenic
TGTACATGTTGAGGAGGTGG+AGG 0.561303 5_4:+5215362 None:intergenic
TATTGAGGAGGAGCATATTG+AGG 0.561401 5_4:+5215392 None:intergenic
TTGTGATTGTGTACATGTTG+AGG 0.564685 5_4:+5215353 None:intergenic
TAGCTGTTATTGTGGGTGGA+TGG 0.567493 5_4:+5215740 None:intergenic
GGTGGCGATAGCTGTTATTG+TGG 0.572837 5_4:+5215732 None:intergenic
TGATTGTATTGACTCATTGG+TGG 0.573418 5_4:+5215714 None:intergenic
CCACAAGGGTATCCGCCACC+GGG 0.580144 5_4:-5215500 Msa0832160:CDS
TGAGGAGGAGCATATTGAGG+AGG 0.587033 5_4:+5215395 None:intergenic
GAACAGGGAATTGAAGAACT+AGG 0.587934 5_4:+5214304 None:intergenic
AACCAACCAATTAATAATGG+GGG 0.589221 5_4:+5215771 None:intergenic
CCACCATCTGAGGGAAAGGA+AGG 0.589362 5_4:-5215560 Msa0832160:CDS
AGGAAGTCTGGTAGGGAACA+GGG 0.589572 5_4:+5214289 None:intergenic
GAGGAGGATACCCTTGTGCT+GGG 0.590232 5_4:+5215411 None:intergenic
GCGATAGCTGTTATTGTGGG+TGG 0.592089 5_4:+5215736 None:intergenic
TACCATCCTTCTAAACAACC+AGG 0.592914 5_4:+5215317 None:intergenic
CCCGGTGGCGGATACCCTTG+TGG 0.593123 5_4:+5215500 None:intergenic
CACAATCACAACAATTCAAG+CGG 0.593493 5_4:-5215341 Msa0832160:CDS
TTTCAAAAGGAAGTCTGGTA+GGG 0.597848 5_4:+5214282 None:intergenic
TAACCAACCAATTAATAATG+GGG 0.598437 5_4:+5215770 None:intergenic
GTCGGAGTTCCACCGCCTCA+AGG 0.599213 5_4:-5215678 Msa0832160:intron
ATACAATCAGCAACAACCAC+CGG 0.601122 5_4:-5215700 Msa0832160:CDS
ATATGAACTAATGCTTCCCA+AGG 0.609643 5_4:-5214374 Msa0832160:three_prime_UTR
CCACAAGGGTATCCACCACC+AGG 0.610047 5_4:-5215530 Msa0832160:CDS
GGCGGTGGAACTCCGACCGG+TGG 0.610943 5_4:+5215684 None:intergenic
CCAGGTTACCCACCGCAACA+AGG 0.612688 5_4:-5215452 Msa0832160:CDS
CCGCAAGGATATCCACCACC+AGG 0.612716 5_4:-5215470 Msa0832160:CDS
TGATTGTGTACATGTTGAGG+AGG 0.613494 5_4:+5215356 None:intergenic
GAAAAGAAACATTCAACAAG+GGG 0.613749 5_4:+5214408 None:intergenic
TACCCTTGTGCTGGGTACGG+TGG 0.619607 5_4:+5215419 None:intergenic
CCACCAGGTTATCCACCACA+AGG 0.620890 5_4:-5215515 Msa0832160:CDS
TGAAAAGAAACATTCAACAA+GGG 0.621294 5_4:+5214407 None:intergenic
TGAGGCGGTGGAACTCCGAC+CGG 0.621449 5_4:+5215681 None:intergenic
GAGGATATCCTTGTTGCGGT+GGG 0.626505 5_4:+5215444 None:intergenic
ATGAAAAGAAACATTCAACA+AGG 0.629147 5_4:+5214406 None:intergenic
GGTTATCCACCACCATCTGA+GGG 0.630213 5_4:-5215569 Msa0832160:CDS
GGTGGAGGATATCCTTGTTG+CGG 0.632248 5_4:+5215440 None:intergenic
CCACCGGGATATCCACCGCA+AGG 0.639006 5_4:-5215485 Msa0832160:CDS
GGAGGTTGAGCGTATTGAGG+AGG 0.640612 5_4:+5215380 None:intergenic
GGTGGCGGATACCCTTGTGG+TGG 0.642616 5_4:+5215503 None:intergenic
ACCAACCAATTAATAATGGG+GGG 0.648041 5_4:+5215772 None:intergenic
GGTGGTGGATATCCTTGCGG+TGG 0.654213 5_4:+5215473 None:intergenic
ATTACGTATGCACCTTGAGG+CGG 0.661787 5_4:+5215666 None:intergenic
AAGGAAGGATATCCTCCACA+AGG 0.665100 5_4:-5215545 Msa0832160:CDS
CCTGGTGGTGGATATCCTTG+CGG 0.684642 5_4:+5215470 None:intergenic
CCTGGTGGTGGATACCCTTG+TGG 0.689600 5_4:+5215530 None:intergenic
CACCACCGTACCCAGCACAA+GGG 0.689874 5_4:-5215421 Msa0832160:CDS
AATCAGCAACAACCACCGGT+CGG 0.690924 5_4:-5215696 Msa0832160:CDS
ACCATCCTTCTAAACAACCA+GGG 0.698603 5_4:+5215318 None:intergenic
AGTGGTGTGATGTGATACAC+AGG 0.699252 5_4:+5215830 None:intergenic
TGTTGCGGTGGGTAACCTGG+TGG 0.703184 5_4:+5215455 None:intergenic
TGAATGAATGAATGAACGAG+TGG 0.716730 5_4:+5215812 None:intergenic
GGTGGTGGATACCCTTGTGG+AGG 0.717402 5_4:+5215533 None:intergenic
CCTTGTGGTGGATAACCTGG+TGG 0.718448 5_4:+5215515 None:intergenic
CACCAGGTTATCCACCACAA+GGG 0.720224 5_4:-5215514 Msa0832160:CDS
AGGAAGGATATCCTCCACAA+GGG 0.729865 5_4:-5215544 Msa0832160:CDS
CCTTGCGGTGGATATCCCGG+TGG 0.742293 5_4:+5215485 None:intergenic
GTGGTGTGATGTGATACACA+GGG 0.806533 5_4:+5215831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATGATTTATTTATGAAT+AGG - chr5_4:5214501-5214520 Msa0832160:exon 10.0%
!! TTTATGATTTATTTATGAAT+AGG - chr5_4:5214501-5214520 Msa0832160:exon 10.0%
!! AAGATAGAAACAAATATATT+TGG - chr5_4:5215091-5215110 Msa0832160:intron 15.0%
!! AAGATAGAAACAAATATATT+TGG - chr5_4:5215091-5215110 Msa0832160:intron 15.0%
!! ATAACCAACCAATTAATAAT+GGG + chr5_4:5214325-5214344 None:intergenic 20.0%
!! ACACATATATAAAACATCAA+AGG + chr5_4:5214921-5214940 None:intergenic 20.0%
!! ATAACCAACCAATTAATAAT+GGG + chr5_4:5214325-5214344 None:intergenic 20.0%
!! ACACATATATAAAACATCAA+AGG + chr5_4:5214921-5214940 None:intergenic 20.0%
! TAACCAACCAATTAATAATG+GGG + chr5_4:5214324-5214343 None:intergenic 25.0%
! GATAACCAACCAATTAATAA+TGG + chr5_4:5214326-5214345 None:intergenic 25.0%
! CTGATGAGAATCATAAATAT+TGG + chr5_4:5215293-5215312 None:intergenic 25.0%
! GTGCAAAATTTCAATTTGAT+AGG + chr5_4:5215372-5215391 None:intergenic 25.0%
! ATATTAAGAATTACCAGCAA+TGG + chr5_4:5215398-5215417 None:intergenic 25.0%
! TGAAAAGAAACATTCAACAA+GGG + chr5_4:5215687-5215706 None:intergenic 25.0%
! ATGAAAAGAAACATTCAACA+AGG + chr5_4:5215688-5215707 None:intergenic 25.0%
!!! AGGAATTTAACTTGTTAACT+AGG + chr5_4:5215770-5215789 None:intergenic 25.0%
! TAACCAACCAATTAATAATG+GGG + chr5_4:5214324-5214343 None:intergenic 25.0%
! GATAACCAACCAATTAATAA+TGG + chr5_4:5214326-5214345 None:intergenic 25.0%
! CTGATGAGAATCATAAATAT+TGG + chr5_4:5215293-5215312 None:intergenic 25.0%
! GTGCAAAATTTCAATTTGAT+AGG + chr5_4:5215372-5215391 None:intergenic 25.0%
! ATATTAAGAATTACCAGCAA+TGG + chr5_4:5215398-5215417 None:intergenic 25.0%
! TGAAAAGAAACATTCAACAA+GGG + chr5_4:5215687-5215706 None:intergenic 25.0%
! ATGAAAAGAAACATTCAACA+AGG + chr5_4:5215688-5215707 None:intergenic 25.0%
!!! AGGAATTTAACTTGTTAACT+AGG + chr5_4:5215770-5215789 None:intergenic 25.0%
AACCAACCAATTAATAATGG+GGG + chr5_4:5214323-5214342 None:intergenic 30.0%
TTAAGAATGAAAGGAATGCA+TGG + chr5_4:5214840-5214859 None:intergenic 30.0%
CACAAGAGATTAAGAATGAA+AGG + chr5_4:5214849-5214868 None:intergenic 30.0%
TATCTTCGATCTCATGTATA+TGG - chr5_4:5214983-5215002 Msa0832160:intron 30.0%
TCTTATTCATAAGATGAGAC+CGG - chr5_4:5215061-5215080 Msa0832160:intron 30.0%
! TGTTTCTATCTTACTTCATC+CGG + chr5_4:5215083-5215102 None:intergenic 30.0%
AACAAATATATTTGGCGTCA+TGG - chr5_4:5215099-5215118 Msa0832160:intron 30.0%
!!! TCCTATCTAGTTTTTGGTTT+GGG + chr5_4:5215165-5215184 None:intergenic 30.0%
AATACTTCATGTTCATGTCA+TGG - chr5_4:5215427-5215446 Msa0832160:CDS 30.0%
ACTTGTTTGCGTTTGTATAT+TGG - chr5_4:5215521-5215540 Msa0832160:CDS 30.0%
TAAACACACTTCAATCCAAT+TGG + chr5_4:5215615-5215634 None:intergenic 30.0%
GAAAAGAAACATTCAACAAG+GGG + chr5_4:5215686-5215705 None:intergenic 30.0%
AACCAACCAATTAATAATGG+GGG + chr5_4:5214323-5214342 None:intergenic 30.0%
TTAAGAATGAAAGGAATGCA+TGG + chr5_4:5214840-5214859 None:intergenic 30.0%
CACAAGAGATTAAGAATGAA+AGG + chr5_4:5214849-5214868 None:intergenic 30.0%
TATCTTCGATCTCATGTATA+TGG - chr5_4:5214983-5215002 Msa0832160:intron 30.0%
TCTTATTCATAAGATGAGAC+CGG - chr5_4:5215061-5215080 Msa0832160:intron 30.0%
! TGTTTCTATCTTACTTCATC+CGG + chr5_4:5215083-5215102 None:intergenic 30.0%
AACAAATATATTTGGCGTCA+TGG - chr5_4:5215099-5215118 Msa0832160:intron 30.0%
!!! TCCTATCTAGTTTTTGGTTT+GGG + chr5_4:5215165-5215184 None:intergenic 30.0%
AATACTTCATGTTCATGTCA+TGG - chr5_4:5215427-5215446 Msa0832160:CDS 30.0%
ACTTGTTTGCGTTTGTATAT+TGG - chr5_4:5215521-5215540 Msa0832160:CDS 30.0%
TAAACACACTTCAATCCAAT+TGG + chr5_4:5215615-5215634 None:intergenic 30.0%
GAAAAGAAACATTCAACAAG+GGG + chr5_4:5215686-5215705 None:intergenic 30.0%
TGAATGAATGAATGAACGAG+TGG + chr5_4:5214282-5214301 None:intergenic 35.0%
! ACCAACCAATTAATAATGGG+GGG + chr5_4:5214322-5214341 None:intergenic 35.0%
!! TGATTGTATTGACTCATTGG+TGG + chr5_4:5214380-5214399 None:intergenic 35.0%
!! TGCTGATTGTATTGACTCAT+TGG + chr5_4:5214383-5214402 None:intergenic 35.0%
TTGTGATTGTGTACATGTTG+AGG + chr5_4:5214741-5214760 None:intergenic 35.0%
CACAATCACAACAATTCAAG+CGG - chr5_4:5214750-5214769 Msa0832160:intron 35.0%
TTGAAATGCGTGTGAATAGT+AGG - chr5_4:5214947-5214966 Msa0832160:intron 35.0%
! TATGGTGTCAGTAATCTGTT+AGG - chr5_4:5215124-5215143 Msa0832160:intron 35.0%
!!! CTCCTATCTAGTTTTTGGTT+TGG + chr5_4:5215166-5215185 None:intergenic 35.0%
TAAAACACACGAAGTTTGTG+TGG + chr5_4:5215227-5215246 None:intergenic 35.0%
! AATTTTGCACATTCCATTGC+TGG - chr5_4:5215382-5215401 Msa0832160:CDS 35.0%
AGTAAAGTCTTCTTAGAAGC+AGG + chr5_4:5215587-5215606 None:intergenic 35.0%
ATATGAACTAATGCTTCCCA+AGG - chr5_4:5215717-5215736 Msa0832160:exon 35.0%
TTTCAAAAGGAAGTCTGGTA+GGG + chr5_4:5215812-5215831 None:intergenic 35.0%
TGAATGAATGAATGAACGAG+TGG + chr5_4:5214282-5214301 None:intergenic 35.0%
! ACCAACCAATTAATAATGGG+GGG + chr5_4:5214322-5214341 None:intergenic 35.0%
!! TGATTGTATTGACTCATTGG+TGG + chr5_4:5214380-5214399 None:intergenic 35.0%
!! TGCTGATTGTATTGACTCAT+TGG + chr5_4:5214383-5214402 None:intergenic 35.0%
TTGTGATTGTGTACATGTTG+AGG + chr5_4:5214741-5214760 None:intergenic 35.0%
CACAATCACAACAATTCAAG+CGG - chr5_4:5214750-5214769 Msa0832160:intron 35.0%
TTGAAATGCGTGTGAATAGT+AGG - chr5_4:5214947-5214966 Msa0832160:intron 35.0%
! TATGGTGTCAGTAATCTGTT+AGG - chr5_4:5215124-5215143 Msa0832160:intron 35.0%
!!! CTCCTATCTAGTTTTTGGTT+TGG + chr5_4:5215166-5215185 None:intergenic 35.0%
TAAAACACACGAAGTTTGTG+TGG + chr5_4:5215227-5215246 None:intergenic 35.0%
! AATTTTGCACATTCCATTGC+TGG - chr5_4:5215382-5215401 Msa0832160:CDS 35.0%
AGTAAAGTCTTCTTAGAAGC+AGG + chr5_4:5215587-5215606 None:intergenic 35.0%
ATATGAACTAATGCTTCCCA+AGG - chr5_4:5215717-5215736 Msa0832160:exon 35.0%
TTTCAAAAGGAAGTCTGGTA+GGG + chr5_4:5215812-5215831 None:intergenic 35.0%
ACCCCCCATTATTAATTGGT+TGG - chr5_4:5214318-5214337 Msa0832160:three_prime_UTR 40.0%
ATACAATCAGCAACAACCAC+CGG - chr5_4:5214391-5214410 Msa0832160:three_prime_UTR 40.0%
ATGATTACGTATGCACCTTG+AGG + chr5_4:5214431-5214450 None:intergenic 40.0%
! TATTGAGGAGGAGCATATTG+AGG + chr5_4:5214702-5214721 None:intergenic 40.0%
TGATTGTGTACATGTTGAGG+AGG + chr5_4:5214738-5214757 None:intergenic 40.0%
ACCATCCTTCTAAACAACCA+GGG + chr5_4:5214776-5214795 None:intergenic 40.0%
TACCATCCTTCTAAACAACC+AGG + chr5_4:5214777-5214796 None:intergenic 40.0%
TTTGTCAAGCAGATCCGATT+CGG + chr5_4:5214886-5214905 None:intergenic 40.0%
ATATTTGGCGTCATGGCATA+TGG - chr5_4:5215106-5215125 Msa0832160:intron 40.0%
GCCCAAACCAAAAACTAGAT+AGG - chr5_4:5215161-5215180 Msa0832160:intron 40.0%
!!! AGGCTCTCCTATCTAGTTTT+TGG + chr5_4:5215171-5215190 None:intergenic 40.0%
AACTAGATAGGAGAGCCTAA+TGG - chr5_4:5215173-5215192 Msa0832160:intron 40.0%
! TGCTCTTAGGTTGCAAATCA+AGG - chr5_4:5215201-5215220 Msa0832160:intron 40.0%
CATGTTCATGTCATGGTAGA+CGG - chr5_4:5215434-5215453 Msa0832160:CDS 40.0%
AACGCAAACAAGTTAGTGAG+TGG + chr5_4:5215514-5215533 None:intergenic 40.0%
CTTAGAAGCAGGCATCTAAT+AGG + chr5_4:5215576-5215595 None:intergenic 40.0%
AGACTTTACTCAGCACCAAT+TGG - chr5_4:5215597-5215616 Msa0832160:intron 40.0%
AATTTGGCAGAGTTGTCCTT+GGG + chr5_4:5215736-5215755 None:intergenic 40.0%
AAATTTGGCAGAGTTGTCCT+TGG + chr5_4:5215737-5215756 None:intergenic 40.0%
GACAACTCTGCCAAATTTAC+AGG - chr5_4:5215739-5215758 Msa0832160:five_prime_UTR 40.0%
CTAGGCAAAGCCTGTAAATT+TGG + chr5_4:5215752-5215771 None:intergenic 40.0%
GAACAGGGAATTGAAGAACT+AGG + chr5_4:5215790-5215809 None:intergenic 40.0%
CTTTCAAAAGGAAGTCTGGT+AGG + chr5_4:5215813-5215832 None:intergenic 40.0%
TCTGCTTTCAAAAGGAAGTC+TGG + chr5_4:5215817-5215836 None:intergenic 40.0%
CTGTGGTTTCTGCTTTCAAA+AGG + chr5_4:5215825-5215844 None:intergenic 40.0%
ACCCCCCATTATTAATTGGT+TGG - chr5_4:5214318-5214337 Msa0832160:three_prime_UTR 40.0%
ATACAATCAGCAACAACCAC+CGG - chr5_4:5214391-5214410 Msa0832160:three_prime_UTR 40.0%
ATGATTACGTATGCACCTTG+AGG + chr5_4:5214431-5214450 None:intergenic 40.0%
! TATTGAGGAGGAGCATATTG+AGG + chr5_4:5214702-5214721 None:intergenic 40.0%
TGATTGTGTACATGTTGAGG+AGG + chr5_4:5214738-5214757 None:intergenic 40.0%
ACCATCCTTCTAAACAACCA+GGG + chr5_4:5214776-5214795 None:intergenic 40.0%
TACCATCCTTCTAAACAACC+AGG + chr5_4:5214777-5214796 None:intergenic 40.0%
TTTGTCAAGCAGATCCGATT+CGG + chr5_4:5214886-5214905 None:intergenic 40.0%
ATATTTGGCGTCATGGCATA+TGG - chr5_4:5215106-5215125 Msa0832160:intron 40.0%
GCCCAAACCAAAAACTAGAT+AGG - chr5_4:5215161-5215180 Msa0832160:intron 40.0%
!!! AGGCTCTCCTATCTAGTTTT+TGG + chr5_4:5215171-5215190 None:intergenic 40.0%
AACTAGATAGGAGAGCCTAA+TGG - chr5_4:5215173-5215192 Msa0832160:intron 40.0%
! TGCTCTTAGGTTGCAAATCA+AGG - chr5_4:5215201-5215220 Msa0832160:intron 40.0%
CATGTTCATGTCATGGTAGA+CGG - chr5_4:5215434-5215453 Msa0832160:CDS 40.0%
AACGCAAACAAGTTAGTGAG+TGG + chr5_4:5215514-5215533 None:intergenic 40.0%
CTTAGAAGCAGGCATCTAAT+AGG + chr5_4:5215576-5215595 None:intergenic 40.0%
AGACTTTACTCAGCACCAAT+TGG - chr5_4:5215597-5215616 Msa0832160:intron 40.0%
AATTTGGCAGAGTTGTCCTT+GGG + chr5_4:5215736-5215755 None:intergenic 40.0%
AAATTTGGCAGAGTTGTCCT+TGG + chr5_4:5215737-5215756 None:intergenic 40.0%
GACAACTCTGCCAAATTTAC+AGG - chr5_4:5215739-5215758 Msa0832160:five_prime_UTR 40.0%
CTAGGCAAAGCCTGTAAATT+TGG + chr5_4:5215752-5215771 None:intergenic 40.0%
GAACAGGGAATTGAAGAACT+AGG + chr5_4:5215790-5215809 None:intergenic 40.0%
CTTTCAAAAGGAAGTCTGGT+AGG + chr5_4:5215813-5215832 None:intergenic 40.0%
TCTGCTTTCAAAAGGAAGTC+TGG + chr5_4:5215817-5215836 None:intergenic 40.0%
CTGTGGTTTCTGCTTTCAAA+AGG + chr5_4:5215825-5215844 None:intergenic 40.0%
GCACACCCCCCATTATTAAT+TGG - chr5_4:5214314-5214333 Msa0832160:three_prime_UTR 45.0%
TGTTATTGTGGGTGGATGGA+TGG + chr5_4:5214350-5214369 None:intergenic 45.0%
TAGCTGTTATTGTGGGTGGA+TGG + chr5_4:5214354-5214373 None:intergenic 45.0%
GTGGCGATAGCTGTTATTGT+GGG + chr5_4:5214361-5214380 None:intergenic 45.0%
ATTACGTATGCACCTTGAGG+CGG + chr5_4:5214428-5214447 None:intergenic 45.0%
TATCCTTCCTTTCCCTCAGA+TGG + chr5_4:5214537-5214556 None:intergenic 45.0%
AAGGAAGGATATCCTCCACA+AGG - chr5_4:5214546-5214565 Msa0832160:intron 45.0%
AGGAAGGATATCCTCCACAA+GGG - chr5_4:5214547-5214566 Msa0832160:intron 45.0%
TTGTGTACATGTTGAGGAGG+TGG + chr5_4:5214735-5214754 None:intergenic 45.0%
ATGCATGCATGGATGAGAGA+GGG + chr5_4:5214817-5214836 None:intergenic 45.0%
!! CCTAAGAGCACTAAGCCATT+AGG + chr5_4:5215191-5215210 None:intergenic 45.0%
CCTAATGGCTTAGTGCTCTT+AGG - chr5_4:5215188-5215207 Msa0832160:intron 45.0%
GCACACCCCCCATTATTAAT+TGG - chr5_4:5214314-5214333 Msa0832160:three_prime_UTR 45.0%
TGTTATTGTGGGTGGATGGA+TGG + chr5_4:5214350-5214369 None:intergenic 45.0%
TAGCTGTTATTGTGGGTGGA+TGG + chr5_4:5214354-5214373 None:intergenic 45.0%
GTGGCGATAGCTGTTATTGT+GGG + chr5_4:5214361-5214380 None:intergenic 45.0%
ATTACGTATGCACCTTGAGG+CGG + chr5_4:5214428-5214447 None:intergenic 45.0%
TATCCTTCCTTTCCCTCAGA+TGG + chr5_4:5214537-5214556 None:intergenic 45.0%
AAGGAAGGATATCCTCCACA+AGG - chr5_4:5214546-5214565 Msa0832160:intron 45.0%
AGGAAGGATATCCTCCACAA+GGG - chr5_4:5214547-5214566 Msa0832160:intron 45.0%
TTGTGTACATGTTGAGGAGG+TGG + chr5_4:5214735-5214754 None:intergenic 45.0%
ATGCATGCATGGATGAGAGA+GGG + chr5_4:5214817-5214836 None:intergenic 45.0%
!! CCTAAGAGCACTAAGCCATT+AGG + chr5_4:5215191-5215210 None:intergenic 45.0%
CCTAATGGCTTAGTGCTCTT+AGG - chr5_4:5215188-5215207 Msa0832160:intron 45.0%
! TAATAATGGGGGGTGTGCGT+GGG + chr5_4:5214312-5214331 None:intergenic 50.0%
! TTAATAATGGGGGGTGTGCG+TGG + chr5_4:5214313-5214332 None:intergenic 50.0%
GCGATAGCTGTTATTGTGGG+TGG + chr5_4:5214358-5214377 None:intergenic 50.0%
GGTGGCGATAGCTGTTATTG+TGG + chr5_4:5214362-5214381 None:intergenic 50.0%
AATCAGCAACAACCACCGGT+CGG - chr5_4:5214395-5214414 Msa0832160:three_prime_UTR 50.0%
AGGTTATCCACCACCATCTG+AGG - chr5_4:5214521-5214540 Msa0832160:CDS 50.0%
GGTTATCCACCACCATCTGA+GGG - chr5_4:5214522-5214541 Msa0832160:CDS 50.0%
CACCAGGTTATCCACCACAA+GGG - chr5_4:5214577-5214596 Msa0832160:intron 50.0%
!! TACCCTTGTGGTGGATAACC+TGG + chr5_4:5214582-5214601 None:intergenic 50.0%
TATCCTTGCGGTGGATATCC+CGG + chr5_4:5214612-5214631 None:intergenic 50.0%
GAGGATATCCTTGTTGCGGT+GGG + chr5_4:5214650-5214669 None:intergenic 50.0%
GGTGGAGGATATCCTTGTTG+CGG + chr5_4:5214654-5214673 None:intergenic 50.0%
! TGAGGAGGAGCATATTGAGG+AGG + chr5_4:5214699-5214718 None:intergenic 50.0%
TGTACATGTTGAGGAGGTGG+AGG + chr5_4:5214732-5214751 None:intergenic 50.0%
GCCCTGGTTGTTTAGAAGGA+TGG - chr5_4:5214772-5214791 Msa0832160:intron 50.0%
GATGCATGCATGGATGAGAG+AGG + chr5_4:5214818-5214837 None:intergenic 50.0%
GGAATGCATGGATGCATGCA+TGG + chr5_4:5214828-5214847 None:intergenic 50.0%
AGGAAGTCTGGTAGGGAACA+GGG + chr5_4:5215805-5215824 None:intergenic 50.0%
AAGGAAGTCTGGTAGGGAAC+AGG + chr5_4:5215806-5215825 None:intergenic 50.0%
! TAATAATGGGGGGTGTGCGT+GGG + chr5_4:5214312-5214331 None:intergenic 50.0%
! TTAATAATGGGGGGTGTGCG+TGG + chr5_4:5214313-5214332 None:intergenic 50.0%
GCGATAGCTGTTATTGTGGG+TGG + chr5_4:5214358-5214377 None:intergenic 50.0%
GGTGGCGATAGCTGTTATTG+TGG + chr5_4:5214362-5214381 None:intergenic 50.0%
AATCAGCAACAACCACCGGT+CGG - chr5_4:5214395-5214414 Msa0832160:three_prime_UTR 50.0%
AGGTTATCCACCACCATCTG+AGG - chr5_4:5214521-5214540 Msa0832160:CDS 50.0%
GGTTATCCACCACCATCTGA+GGG - chr5_4:5214522-5214541 Msa0832160:CDS 50.0%
CACCAGGTTATCCACCACAA+GGG - chr5_4:5214577-5214596 Msa0832160:intron 50.0%
!! TACCCTTGTGGTGGATAACC+TGG + chr5_4:5214582-5214601 None:intergenic 50.0%
TATCCTTGCGGTGGATATCC+CGG + chr5_4:5214612-5214631 None:intergenic 50.0%
GAGGATATCCTTGTTGCGGT+GGG + chr5_4:5214650-5214669 None:intergenic 50.0%
GGTGGAGGATATCCTTGTTG+CGG + chr5_4:5214654-5214673 None:intergenic 50.0%
! TGAGGAGGAGCATATTGAGG+AGG + chr5_4:5214699-5214718 None:intergenic 50.0%
TGTACATGTTGAGGAGGTGG+AGG + chr5_4:5214732-5214751 None:intergenic 50.0%
GCCCTGGTTGTTTAGAAGGA+TGG - chr5_4:5214772-5214791 Msa0832160:intron 50.0%
GATGCATGCATGGATGAGAG+AGG + chr5_4:5214818-5214837 None:intergenic 50.0%
GGAATGCATGGATGCATGCA+TGG + chr5_4:5214828-5214847 None:intergenic 50.0%
AGGAAGTCTGGTAGGGAACA+GGG + chr5_4:5215805-5215824 None:intergenic 50.0%
AAGGAAGTCTGGTAGGGAAC+AGG + chr5_4:5215806-5215825 None:intergenic 50.0%
TCCACCACCATCTGAGGGAA+AGG - chr5_4:5214527-5214546 Msa0832160:CDS 55.0%
! TCCTTTCCCTCAGATGGTGG+TGG + chr5_4:5214531-5214550 None:intergenic 55.0%
CCTTCCTTTCCCTCAGATGG+TGG + chr5_4:5214534-5214553 None:intergenic 55.0%
CCACCATCTGAGGGAAAGGA+AGG - chr5_4:5214531-5214550 Msa0832160:CDS 55.0%
!! TGTGGTGGATAACCTGGTGG+TGG + chr5_4:5214576-5214595 None:intergenic 55.0%
!! CCTTGTGGTGGATAACCTGG+TGG + chr5_4:5214579-5214598 None:intergenic 55.0%
CCACCAGGTTATCCACCACA+AGG - chr5_4:5214576-5214595 Msa0832160:intron 55.0%
!! CCTGGTGGTGGATATCCTTG+CGG + chr5_4:5214624-5214643 None:intergenic 55.0%
GGAGGATATCCTTGTTGCGG+TGG + chr5_4:5214651-5214670 None:intergenic 55.0%
GGATACCCTTGTGCTGGGTA+CGG + chr5_4:5214678-5214697 None:intergenic 55.0%
GAGGAGGATACCCTTGTGCT+GGG + chr5_4:5214683-5214702 None:intergenic 55.0%
TGAGGAGGATACCCTTGTGC+TGG + chr5_4:5214684-5214703 None:intergenic 55.0%
GGAGGTTGAGCGTATTGAGG+AGG + chr5_4:5214714-5214733 None:intergenic 55.0%
GGTGGAGGTTGAGCGTATTG+AGG + chr5_4:5214717-5214736 None:intergenic 55.0%
CACAACAATTCAAGCGGCCC+TGG - chr5_4:5214756-5214775 Msa0832160:intron 55.0%
AGCGGCCCTGGTTGTTTAGA+AGG - chr5_4:5214768-5214787 Msa0832160:intron 55.0%
!! TCAAGCAGATCCGATTCGGC+GGG + chr5_4:5214882-5214901 None:intergenic 55.0%
!! GTCAAGCAGATCCGATTCGG+CGG + chr5_4:5214883-5214902 None:intergenic 55.0%
TCCACCACCATCTGAGGGAA+AGG - chr5_4:5214527-5214546 Msa0832160:CDS 55.0%
! TCCTTTCCCTCAGATGGTGG+TGG + chr5_4:5214531-5214550 None:intergenic 55.0%
CCTTCCTTTCCCTCAGATGG+TGG + chr5_4:5214534-5214553 None:intergenic 55.0%
CCACCATCTGAGGGAAAGGA+AGG - chr5_4:5214531-5214550 Msa0832160:CDS 55.0%
!! TGTGGTGGATAACCTGGTGG+TGG + chr5_4:5214576-5214595 None:intergenic 55.0%
!! CCTTGTGGTGGATAACCTGG+TGG + chr5_4:5214579-5214598 None:intergenic 55.0%
CCACCAGGTTATCCACCACA+AGG - chr5_4:5214576-5214595 Msa0832160:intron 55.0%
!! CCTGGTGGTGGATATCCTTG+CGG + chr5_4:5214624-5214643 None:intergenic 55.0%
GGAGGATATCCTTGTTGCGG+TGG + chr5_4:5214651-5214670 None:intergenic 55.0%
GGATACCCTTGTGCTGGGTA+CGG + chr5_4:5214678-5214697 None:intergenic 55.0%
GAGGAGGATACCCTTGTGCT+GGG + chr5_4:5214683-5214702 None:intergenic 55.0%
TGAGGAGGATACCCTTGTGC+TGG + chr5_4:5214684-5214703 None:intergenic 55.0%
GGAGGTTGAGCGTATTGAGG+AGG + chr5_4:5214714-5214733 None:intergenic 55.0%
GGTGGAGGTTGAGCGTATTG+AGG + chr5_4:5214717-5214736 None:intergenic 55.0%
CACAACAATTCAAGCGGCCC+TGG - chr5_4:5214756-5214775 Msa0832160:intron 55.0%
AGCGGCCCTGGTTGTTTAGA+AGG - chr5_4:5214768-5214787 Msa0832160:intron 55.0%
!! TCAAGCAGATCCGATTCGGC+GGG + chr5_4:5214882-5214901 None:intergenic 55.0%
!! GTCAAGCAGATCCGATTCGG+CGG + chr5_4:5214883-5214902 None:intergenic 55.0%
ACGTATGCACCTTGAGGCGG+TGG + chr5_4:5214425-5214444 None:intergenic 60.0%
!! GGTGGTGGATACCCTTGTGG+AGG + chr5_4:5214561-5214580 None:intergenic 60.0%
!! CCTGGTGGTGGATACCCTTG+TGG + chr5_4:5214564-5214583 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+AGG - chr5_4:5214561-5214580 Msa0832160:intron 60.0%
!! ACCACAAGGGTATCCGCCAC+CGG - chr5_4:5214590-5214609 Msa0832160:intron 60.0%
!! GGTGGTGGATATCCTTGCGG+TGG + chr5_4:5214621-5214640 None:intergenic 60.0%
CCGCAAGGATATCCACCACC+AGG - chr5_4:5214621-5214640 Msa0832160:intron 60.0%
TGTTGCGGTGGGTAACCTGG+TGG + chr5_4:5214639-5214658 None:intergenic 60.0%
CCTTGTTGCGGTGGGTAACC+TGG + chr5_4:5214642-5214661 None:intergenic 60.0%
CCAGGTTACCCACCGCAACA+AGG - chr5_4:5214639-5214658 Msa0832160:intron 60.0%
CACCACCGTACCCAGCACAA+GGG - chr5_4:5214670-5214689 Msa0832160:intron 60.0%
TACCCTTGTGCTGGGTACGG+TGG + chr5_4:5214675-5214694 None:intergenic 60.0%
TCTCGTTCTGCCCGCCGAAT+CGG - chr5_4:5214869-5214888 Msa0832160:intron 60.0%
ACGTATGCACCTTGAGGCGG+TGG + chr5_4:5214425-5214444 None:intergenic 60.0%
!! GGTGGTGGATACCCTTGTGG+AGG + chr5_4:5214561-5214580 None:intergenic 60.0%
!! CCTGGTGGTGGATACCCTTG+TGG + chr5_4:5214564-5214583 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+AGG - chr5_4:5214561-5214580 Msa0832160:intron 60.0%
!! ACCACAAGGGTATCCGCCAC+CGG - chr5_4:5214590-5214609 Msa0832160:intron 60.0%
!! GGTGGTGGATATCCTTGCGG+TGG + chr5_4:5214621-5214640 None:intergenic 60.0%
CCGCAAGGATATCCACCACC+AGG - chr5_4:5214621-5214640 Msa0832160:intron 60.0%
TGTTGCGGTGGGTAACCTGG+TGG + chr5_4:5214639-5214658 None:intergenic 60.0%
CCTTGTTGCGGTGGGTAACC+TGG + chr5_4:5214642-5214661 None:intergenic 60.0%
CCAGGTTACCCACCGCAACA+AGG - chr5_4:5214639-5214658 Msa0832160:intron 60.0%
CACCACCGTACCCAGCACAA+GGG - chr5_4:5214670-5214689 Msa0832160:intron 60.0%
TACCCTTGTGCTGGGTACGG+TGG + chr5_4:5214675-5214694 None:intergenic 60.0%
TCTCGTTCTGCCCGCCGAAT+CGG - chr5_4:5214869-5214888 Msa0832160:intron 60.0%
! TAATGGGGGGTGTGCGTGGG+TGG + chr5_4:5214309-5214328 None:intergenic 65.0%
TGAGGCGGTGGAACTCCGAC+CGG + chr5_4:5214413-5214432 None:intergenic 65.0%
GTCGGAGTTCCACCGCCTCA+AGG - chr5_4:5214413-5214432 Msa0832160:three_prime_UTR 65.0%
!! GGTGGCGGATACCCTTGTGG+TGG + chr5_4:5214591-5214610 None:intergenic 65.0%
!! CCACAAGGGTATCCGCCACC+GGG - chr5_4:5214591-5214610 Msa0832160:intron 65.0%
TGCGGTGGATATCCCGGTGG+CGG + chr5_4:5214606-5214625 None:intergenic 65.0%
CCTTGCGGTGGATATCCCGG+TGG + chr5_4:5214609-5214628 None:intergenic 65.0%
CCACCGGGATATCCACCGCA+AGG - chr5_4:5214606-5214625 Msa0832160:intron 65.0%
TGCGGTGGGTAACCTGGTGG+TGG + chr5_4:5214636-5214655 None:intergenic 65.0%
! TGTGCTGGGTACGGTGGTGG+AGG + chr5_4:5214669-5214688 None:intergenic 65.0%
CCTTGTGCTGGGTACGGTGG+TGG + chr5_4:5214672-5214691 None:intergenic 65.0%
CCACCACCGTACCCAGCACA+AGG - chr5_4:5214669-5214688 Msa0832160:intron 65.0%
! TAATGGGGGGTGTGCGTGGG+TGG + chr5_4:5214309-5214328 None:intergenic 65.0%
TGAGGCGGTGGAACTCCGAC+CGG + chr5_4:5214413-5214432 None:intergenic 65.0%
GTCGGAGTTCCACCGCCTCA+AGG - chr5_4:5214413-5214432 Msa0832160:three_prime_UTR 65.0%
!! GGTGGCGGATACCCTTGTGG+TGG + chr5_4:5214591-5214610 None:intergenic 65.0%
!! CCACAAGGGTATCCGCCACC+GGG - chr5_4:5214591-5214610 Msa0832160:intron 65.0%
TGCGGTGGATATCCCGGTGG+CGG + chr5_4:5214606-5214625 None:intergenic 65.0%
CCTTGCGGTGGATATCCCGG+TGG + chr5_4:5214609-5214628 None:intergenic 65.0%
CCACCGGGATATCCACCGCA+AGG - chr5_4:5214606-5214625 Msa0832160:intron 65.0%
TGCGGTGGGTAACCTGGTGG+TGG + chr5_4:5214636-5214655 None:intergenic 65.0%
! TGTGCTGGGTACGGTGGTGG+AGG + chr5_4:5214669-5214688 None:intergenic 65.0%
CCTTGTGCTGGGTACGGTGG+TGG + chr5_4:5214672-5214691 None:intergenic 65.0%
CCACCACCGTACCCAGCACA+AGG - chr5_4:5214669-5214688 Msa0832160:intron 65.0%
!! CCCGGTGGCGGATACCCTTG+TGG + chr5_4:5214594-5214613 None:intergenic 70.0%
!! CCCGGTGGCGGATACCCTTG+TGG + chr5_4:5214594-5214613 None:intergenic 70.0%
GGCGGTGGAACTCCGACCGG+TGG + chr5_4:5214410-5214429 None:intergenic 75.0%
GGCGGTGGAACTCCGACCGG+TGG + chr5_4:5214410-5214429 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5214263 5215850 5214263 ID=Msa0832160;Name=Msa0832160
chr5_4 mRNA 5214263 5215850 5214263 ID=Msa0832160-mRNA-1;Parent=Msa0832160;Name=Msa0832160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|0.5|0.33|3|256|122
chr5_4 exon 5214263 5214564 5214263 ID=Msa0832160-mRNA-1:exon:2221;Parent=Msa0832160-mRNA-1
chr5_4 exon 5215320 5215590 5215320 ID=Msa0832160-mRNA-1:exon:2220;Parent=Msa0832160-mRNA-1
chr5_4 exon 5215679 5215850 5215679 ID=Msa0832160-mRNA-1:exon:2219;Parent=Msa0832160-mRNA-1
chr5_4 five_prime_UTR 5215731 5215850 5215731 ID=Msa0832160-mRNA-1:five_prime_utr;Parent=Msa0832160-mRNA-1
chr5_4 CDS 5215679 5215730 5215679 ID=Msa0832160-mRNA-1:cds;Parent=Msa0832160-mRNA-1
chr5_4 CDS 5215320 5215590 5215320 ID=Msa0832160-mRNA-1:cds;Parent=Msa0832160-mRNA-1
chr5_4 CDS 5214519 5214564 5214519 ID=Msa0832160-mRNA-1:cds;Parent=Msa0832160-mRNA-1
chr5_4 three_prime_UTR 5214263 5214518 5214263 ID=Msa0832160-mRNA-1:three_prime_utr;Parent=Msa0832160-mRNA-1
Gene Sequence

>Msa0832160

ATGAGTCAATACAATCAGCAACAACCACCGGTCGGAGTTCCACCGCCTCAAGGTTATCCACCACCATCTGAGGGAAAGGAAGGATATCCTCCACAAGGGTATCCACCACCAGGTTATCCACCACAAGGGTATCCGCCACCGGGATATCCACCGCAAGGATATCCACCACCAGGTTACCCACCGCAACAAGGATATCCTCCACCACCGTACCCAGCACAAGGGTATCCTCCTCAATATGCTCCTCCTCAATACGCTCAACCTCCACCTCCTCAACATGTACACAATCACAACAATTCAAGCGGCCCTGGTTGTTTAGAAGGATGTTGTGCTGCTCTGTGCTGCTGCTGCCTATTAGATGCCTGCTTCTAA

Protein sequence

>Msa0832160

MSQYNQQQPPVGVPPPQGYPPPSEGKEGYPPQGYPPPGYPPQGYPPPGYPPQGYPPPGYPPQQGYPPPPYPAQGYPPQYAPPQYAQPPPPQHVHNHNNSSGPGCLEGCCAALCCCCLLDACF*