AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0099530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099530 MtrunA17_Chr1g0150851 97.118 347 10 0 1 347 1 347 0.0 701
Msa0099530 MtrunA17_Chr5g0394371 68.106 301 96 0 42 342 25 325 3.68e-156 441
Msa0099530 MtrunA17_Chr3g0136181 78.788 198 42 0 149 346 30 227 7.61e-118 340
Msa0099530 MtrunA17_Chr5g0413701 33.212 274 164 10 21 285 33 296 1.37e-38 140
Msa0099530 MtrunA17_Chr8g0365071 31.200 250 156 8 44 285 54 295 3.33e-35 131
Msa0099530 MtrunA17_Chr3g0117881 32.203 177 116 3 57 232 59 232 5.83e-25 103
Msa0099530 MtrunA17_Chr3g0126551 28.723 282 190 8 56 332 83 358 4.27e-23 98.6
Msa0099530 MtrunA17_Chr1g0158851 30.337 267 177 7 56 320 88 347 5.38e-22 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099530 AT5G19530.1 69.027 339 100 2 11 346 1 337 1.61e-176 493
Msa0099530 AT5G19530.2 70.462 325 94 1 22 346 8 330 1.35e-173 485
Msa0099530 AT1G23820.2 34.667 225 139 6 56 277 105 324 7.54e-40 143
Msa0099530 AT1G23820.1 34.419 215 134 5 56 268 61 270 3.61e-37 136
Msa0099530 AT1G70310.1 31.600 250 155 8 44 285 51 292 1.67e-35 132
Msa0099530 AT5G53120.1 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0099530 AT5G53120.4 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0099530 AT5G53120.2 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0099530 AT5G53120.5 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0099530 AT5G53120.3 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0099530 AT5G53120.7 31.128 257 162 6 56 310 101 344 2.47e-23 99.8
Msa0099530 AT5G53120.6 28.169 284 162 8 56 310 84 354 9.51e-20 89.7

Find 142 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACGTTTAAAATTGATTT+AGG 0.128410 1_3:-5763702 None:intergenic
CTGAAGCCATTATTGATTAT+TGG 0.166298 1_3:+5764215 Msa0099530:three_prime_UTR
AACGAACCTGTTGAGTTTAA+AGG 0.204551 1_3:-5759306 None:intergenic
TCATTAACGTAAAACATTTC+TGG 0.211926 1_3:-5759182 None:intergenic
GAGTCATTTCCTTTCCTTTA+GGG 0.233373 1_3:-5763156 None:intergenic
AAAATACCTGGTTGCAAATA+AGG 0.242099 1_3:+5761665 Msa0099530:CDS
GCCAAGTTGATGAAACAATT+TGG 0.248516 1_3:-5763565 None:intergenic
TTGTGGGTGGCTTGGGTTAG+TGG 0.257951 1_3:+5764172 Msa0099530:three_prime_UTR
TTAGTCCAGATTTGACTTTA+AGG 0.259268 1_3:+5763216 Msa0099530:three_prime_UTR
ACATGGTTTGGTTGAACTTC+AGG 0.282517 1_3:-5759221 None:intergenic
AGAATTGAAGCAAGAATAAA+AGG 0.285461 1_3:+5762889 Msa0099530:CDS
TTTAACTAAGTTCTCTTAAC+AGG 0.285839 1_3:+5763842 Msa0099530:three_prime_UTR
TCCACAGCATCAATCAATAT+TGG 0.287518 1_3:-5762856 None:intergenic
TGTTGTTCTTACAGCTATAT+TGG 0.300493 1_3:-5763894 Msa0099540:CDS
CCCCAAGACGGTGTTTATAA+TGG 0.300655 1_3:+5760795 Msa0099530:CDS
CCCATTATAAACACCGTCTT+GGG 0.300710 1_3:-5760796 None:intergenic
GCCATTATTGATTATTGGTT+TGG 0.302420 1_3:+5764220 Msa0099530:three_prime_UTR
CTCTTGGATACCAAGCGTTT+TGG 0.310020 1_3:+5759540 Msa0099530:CDS
AGAGTCATTTCCTTTCCTTT+AGG 0.310534 1_3:-5763157 None:intergenic
GAACGTTTAAAATTGATTTA+GGG 0.321829 1_3:-5763701 None:intergenic
TGATATCATTGTTGGAGATT+TGG 0.339425 1_3:+5761896 Msa0099530:CDS
GTTGTTCTTACAGCTATATT+GGG 0.346937 1_3:-5763893 Msa0099540:CDS
GTCTTCTTTGCTTGTGGAAA+GGG 0.349407 1_3:+5764106 Msa0099530:three_prime_UTR
ATTGGATGTGAGATGGAAAA+TGG 0.349509 1_3:+5764327 Msa0099530:three_prime_UTR
CTTCACAACTTTCTCATAGA+AGG 0.351490 1_3:-5761964 None:intergenic
TACCATCATTTGCTGATTCA+TGG 0.351693 1_3:+5762722 Msa0099530:CDS
ATGCCATTGTCAGTGAGTTT+AGG 0.356612 1_3:-5761987 None:intergenic
TGATTCATGGGGATGGGTTA+TGG 0.358644 1_3:+5762735 Msa0099530:CDS
ACCGTTCAATCTTAAATAAA+TGG 0.363219 1_3:-5763664 None:intergenic
GAGAAGTTTGATATCATTGT+TGG 0.364473 1_3:+5761888 Msa0099530:CDS
ACCAAACCAATAATCAATAA+TGG 0.366810 1_3:-5764221 None:intergenic
ATAGTTACCTAGATAAAATA+AGG 0.367155 1_3:+5763355 Msa0099530:three_prime_UTR
GCTATATTGGGTGCTGTTGT+TGG 0.379016 1_3:-5763881 Msa0099540:CDS
ATCAACTTGGCTTGAGTAGT+AGG 0.380131 1_3:+5763577 Msa0099530:three_prime_UTR
ACTTCAAAATCCAACCTTGT+TGG 0.385727 1_3:-5764067 Msa0099540:CDS
GTTGAAGAAATGTGTGGAAT+TGG 0.387818 1_3:+5764309 Msa0099530:three_prime_UTR
TTCTTATAGGCTGGACCAGC+AGG 0.390978 1_3:+5762282 Msa0099530:intron
AACCTGATGAATTGTGTCTA+AGG 0.394713 1_3:+5763495 Msa0099530:three_prime_UTR
AATGGTCCTTTAAACTCAAC+AGG 0.400428 1_3:+5759300 Msa0099530:CDS
ATACTTAGGTAAAGTTCTAT+AGG 0.406545 1_3:+5763381 Msa0099530:three_prime_UTR
ATACCAGGACATTGCTCTCT+TGG 0.416640 1_3:+5759524 Msa0099530:CDS
TGCTCTATCTAGACGGTGCT+TGG 0.419252 1_3:+5762917 Msa0099530:CDS
AATAATATAGCGCAATACTT+TGG 0.419360 1_3:-5763195 None:intergenic
ATTGACCTTAAAGTCAAATC+TGG 0.420822 1_3:-5763221 None:intergenic
CCCAAGACGGTGTTTATAAT+GGG 0.420987 1_3:+5760796 Msa0099530:CDS
TCCAAATTGTTTCATCAACT+TGG 0.421237 1_3:+5763564 Msa0099530:three_prime_UTR
ATTGATTGATGCTGTGGAAA+TGG 0.421971 1_3:+5762861 Msa0099530:CDS
ACTAGTGTCTTCTTTGCTTG+TGG 0.430477 1_3:+5764100 Msa0099530:three_prime_UTR
CATTTGCTGATTCATGGGGA+TGG 0.430597 1_3:+5762728 Msa0099530:CDS
GATAATGCTAGATTTATTCC+TGG 0.440598 1_3:+5763114 Msa0099530:CDS
CATGGTTTGGTTGAACTTCA+GGG 0.443362 1_3:-5759220 None:intergenic
TGATTCTTCCACATGGTATG+AGG 0.443438 1_3:+5759256 Msa0099530:CDS
TGCCTTAGACACAATTCATC+AGG 0.445100 1_3:-5763497 None:intergenic
CCAGATGTTGCTCATGCAGC+TGG 0.445643 1_3:-5763971 Msa0099540:CDS
TATACACAACACCATAAAAC+AGG 0.448583 1_3:+5762335 Msa0099530:CDS
TCAACGTTGTTGACATGGTT+TGG 0.458692 1_3:-5759233 None:intergenic
GATGCATGGTTGGATATATG+AGG 0.459338 1_3:+5764272 Msa0099530:three_prime_UTR
TGTCTTCTTTGCTTGTGGAA+AGG 0.459779 1_3:+5764105 Msa0099530:three_prime_UTR
TTTGCTTGTGGAAAGGGCAA+TGG 0.463285 1_3:+5764112 Msa0099530:three_prime_UTR
AATATTCCTGCAGGAGGTGG+TGG 0.466008 1_3:+5761632 Msa0099530:intron
TCTCTTAACAGGATCAAAGT+TGG 0.467747 1_3:+5763853 Msa0099530:three_prime_UTR
ATATAGGCGTTGATGCTTGA+TGG 0.475521 1_3:+5759900 Msa0099530:intron
TGCTTGAATTCCAACAAGGT+TGG 0.477724 1_3:+5764057 Msa0099530:three_prime_UTR
GACTTTAAGGTCAATCTGTA+GGG 0.481181 1_3:+5763229 Msa0099530:three_prime_UTR
TTCAAGAAGGGTGTGGTGGA+AGG 0.483812 1_3:+5764136 Msa0099530:three_prime_UTR
TGACTTTAAGGTCAATCTGT+AGG 0.485191 1_3:+5763228 Msa0099530:three_prime_UTR
ACCATCATTTGCTGATTCAT+GGG 0.486333 1_3:+5762723 Msa0099530:CDS
ATAAAATAAGGAAAATACTT+AGG 0.486942 1_3:+5763367 Msa0099530:three_prime_UTR
ATATGAGGGTTAGATATTAG+TGG 0.487006 1_3:+5764287 Msa0099530:three_prime_UTR
TGGTGAAGGTTCAGCAGCTA+GGG 0.487536 1_3:+5760822 Msa0099530:CDS
TCCCATTATAAACACCGTCT+TGG 0.488858 1_3:-5760797 None:intergenic
TTGCAATTGTTTCTAATACA+AGG 0.489713 1_3:-5763748 None:intergenic
CCAGCTGCATGAGCAACATC+TGG 0.490868 1_3:+5763971 Msa0099530:three_prime_UTR
TAAACGTTCTCGGCAATTGT+TGG 0.493487 1_3:+5763715 Msa0099530:three_prime_UTR
ACAATTGCAAACAAATCAAA+AGG 0.493565 1_3:+5763761 Msa0099530:three_prime_UTR
CATTTCTGGTGCCTCTCCCA+TGG 0.496543 1_3:-5759168 None:intergenic
TTTATAATGGGAGGTGGTGA+AGG 0.498635 1_3:+5760808 Msa0099530:CDS
TATTCATGATGGTAGATGAA+TGG 0.501719 1_3:-5762942 None:intergenic
CCCATTTGGTGCAGATGTGG+TGG 0.502068 1_3:+5762684 Msa0099530:intron
GGCTGAATTAGAGAAAAGAA+AGG 0.510493 1_3:+5761866 Msa0099530:CDS
GCTAGATTTATTCCTGGTCA+TGG 0.513206 1_3:+5763120 Msa0099530:CDS
ATTTGCTGATTCATGGGGAT+GGG 0.513753 1_3:+5762729 Msa0099530:CDS
ACCATTTATTTAAGATTGAA+CGG 0.515483 1_3:+5763663 Msa0099530:three_prime_UTR
TTGGCTGACCCACTTGAAGA+TGG 0.518779 1_3:+5761915 Msa0099530:CDS
AGCTCTCAAGCACAAGTCAA+TGG 0.518812 1_3:+5760846 Msa0099530:CDS
TCATTGATGATGATCTCAAA+TGG 0.521281 1_3:+5759282 Msa0099530:CDS
GCAAACCTTTCCAAAACGCT+TGG 0.521318 1_3:-5759550 None:intergenic
GCATAGCATGTCGTCCCTAA+AGG 0.523854 1_3:+5763142 Msa0099530:CDS
GTGGTGAAGGTTCAGCAGCT+AGG 0.528642 1_3:+5760821 Msa0099530:CDS
AATCATCAACGTTGTTGACA+TGG 0.529958 1_3:-5759238 None:intergenic
ACCAATATTGATTGATGCTG+TGG 0.532194 1_3:+5762855 Msa0099530:CDS
CCCCATGAATCAGCAAATGA+TGG 0.540394 1_3:-5762724 None:intergenic
CTATGTTGTCACAATCTCAA+AGG 0.546360 1_3:-5763819 None:intergenic
AATATAGCGCAATACTTTGG+AGG 0.553311 1_3:-5763192 None:intergenic
AACAAATAAAACCATGGGAG+AGG 0.560741 1_3:+5759157 Msa0099530:CDS
TTGCTTAGCATTGCTGCTGG+TGG 0.565122 1_3:-5763917 Msa0099540:CDS
CGACATGCTATGCCATGACC+AGG 0.567260 1_3:-5763132 None:intergenic
ATTGAAAGACAAAACAGTGA+AGG 0.569072 1_3:-5764032 Msa0099540:CDS
TTACGTTAATGAGTTTGCAA+AGG 0.578372 1_3:+5759193 Msa0099530:CDS
TTGTGTGAAAAGATACCTGC+TGG 0.579877 1_3:-5762297 None:intergenic
TTGAAAGACAAAACAGTGAA+GGG 0.580339 1_3:-5764031 Msa0099540:CDS
GAACACGGTCTTATTCATGA+TGG 0.581081 1_3:-5762953 None:intergenic
ATGCCTCCTTATTTGCAACC+AGG 0.583465 1_3:-5761671 None:intergenic
AAGGGCAATGGTTTCAAGAA+GGG 0.584655 1_3:+5764124 Msa0099530:three_prime_UTR
CAGCATCAATCAATATTGGT+TGG 0.586960 1_3:-5762852 None:intergenic
GTGTGGAATTGGATGTGAGA+TGG 0.594217 1_3:+5764320 Msa0099530:three_prime_UTR
AAAGGGCAATGGTTTCAAGA+AGG 0.598373 1_3:+5764123 Msa0099530:three_prime_UTR
TATCCAAGAGAGCAATGTCC+TGG 0.598690 1_3:-5759527 None:intergenic
TTTGGATGACATAAAAGAGA+GGG 0.601046 1_3:-5759978 None:intergenic
AAGAAACAAGTGACAATGGT+GGG 0.602709 1_3:-5759111 None:intergenic
GCATGTCGTCCCTAAAGGAA+AGG 0.605693 1_3:+5763147 Msa0099530:exon
CAATGGTTTCAAGAAGGGTG+TGG 0.606722 1_3:+5764129 Msa0099530:three_prime_UTR
GGATTTCTGCAGAAAATACC+TGG 0.607431 1_3:+5761653 Msa0099530:CDS
AACAAAGAAACAAGTGACAA+TGG 0.608931 1_3:-5759115 None:intergenic
GGAAAATTGCTCTATCTAGA+CGG 0.609264 1_3:+5762910 Msa0099530:CDS
TGGTTTCAAGAAGGGTGTGG+TGG 0.610036 1_3:+5764132 Msa0099530:three_prime_UTR
AAGCCTAAACTCACTGACAA+TGG 0.615534 1_3:+5761984 Msa0099530:CDS
CCATTATAAACACCGTCTTG+GGG 0.615981 1_3:-5760795 None:intergenic
TAAAGCGATTAGTGAATACC+AGG 0.616434 1_3:+5759509 Msa0099530:CDS
GTGTGGTGGAAGGATTGTGA+AGG 0.617280 1_3:+5764146 Msa0099530:three_prime_UTR
ACGGTGTTTATAATGGGAGG+TGG 0.620093 1_3:+5760802 Msa0099530:CDS
ATTGCAAACAAATCAAAAGG+TGG 0.622598 1_3:+5763764 Msa0099530:three_prime_UTR
TTAGTGTAGAGCTGATAGCA+AGG 0.624227 1_3:-5761939 None:intergenic
AACATCTGGTAACACCATAG+AGG 0.635135 1_3:+5763985 Msa0099530:three_prime_UTR
ACTTTGCACAGTTGATGACA+AGG 0.637400 1_3:-5761713 None:intergenic
TAGCAAGGACCATCTTCAAG+TGG 0.638054 1_3:-5761924 None:intergenic
AGCAAGGACCATCTTCAAGT+GGG 0.640286 1_3:-5761923 None:intergenic
ATGATGCTTGAATTCCAACA+AGG 0.644146 1_3:+5764053 Msa0099530:three_prime_UTR
CTTTGGATGACATAAAAGAG+AGG 0.645177 1_3:-5759979 None:intergenic
GTACACTTACGATTTGAACA+CGG 0.645888 1_3:-5762968 None:intergenic
CCATCATTTGCTGATTCATG+GGG 0.648783 1_3:+5762724 Msa0099530:CDS
ATACCTGGTTGCAAATAAGG+AGG 0.651779 1_3:+5761668 Msa0099530:CDS
GATGAATTGTGTCTAAGGCA+CGG 0.652625 1_3:+5763500 Msa0099530:three_prime_UTR
AGTTATGTGCGATATTGACA+AGG 0.654516 1_3:+5760876 Msa0099530:CDS
ATATATTGGCAGCCCCAAGA+CGG 0.656927 1_3:+5760783 Msa0099530:intron
AAGACGGTGTTTATAATGGG+AGG 0.658751 1_3:+5760799 Msa0099530:CDS
ATGCATGGTTGGATATATGA+GGG 0.672872 1_3:+5764273 Msa0099530:three_prime_UTR
AAAGAAACAAGTGACAATGG+TGG 0.679920 1_3:-5759112 None:intergenic
AATGATTTCCTCATACCATG+TGG 0.685776 1_3:-5759264 None:intergenic
ACGTTGATGATTCTTCCACA+TGG 0.698888 1_3:+5759249 Msa0099530:CDS
GGTGGGTGCAAAGTGCAATG+TGG 0.721477 1_3:-5759094 None:intergenic
TTAGTGGTTGAAGAAATGTG+TGG 0.736065 1_3:+5764303 Msa0099530:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATGAATTTTTTTCTTTT+TGG + chr1_3:5760069-5760088 Msa0099530:intron 10.0%
!!! TTTTTTCATTTTAATATACA+TGG - chr1_3:5760115-5760134 None:intergenic 10.0%
!! TTATAATACTATAAACAAAA+TGG - chr1_3:5760229-5760248 None:intergenic 10.0%
!!! CAAGTTTTTTTTTTTTTTTT+AGG + chr1_3:5761365-5761384 Msa0099530:intron 10.0%
!!! TTTTTTTAAAACAATAGTAA+TGG + chr1_3:5761401-5761420 Msa0099530:intron 10.0%
!! AACAAAATTTAGTATATGTT+TGG + chr1_3:5759626-5759645 Msa0099530:intron 15.0%
!! ATTATAAAACAAACTTACTT+TGG - chr1_3:5759999-5760018 None:intergenic 15.0%
!!! TAAGTTTGTTTTATAATATC+AGG + chr1_3:5760002-5760021 Msa0099530:intron 15.0%
!!! AAGTTTGTTTTATAATATCA+GGG + chr1_3:5760003-5760022 Msa0099530:intron 15.0%
!! AGAAAAAAAAAACTAGTAAT+TGG + chr1_3:5760473-5760492 Msa0099530:intron 15.0%
!!! AAGTCATATTCTTATTTTTT+TGG + chr1_3:5760909-5760928 Msa0099530:intron 15.0%
!!! AGTCATATTCTTATTTTTTT+GGG + chr1_3:5760910-5760929 Msa0099530:intron 15.0%
!!! TTATTAAGTTTTCAATTTGA+GGG - chr1_3:5761016-5761035 None:intergenic 15.0%
!!! ATTATTAAGTTTTCAATTTG+AGG - chr1_3:5761017-5761036 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTAGGGA+AGG + chr1_3:5761370-5761389 Msa0099530:intron 15.0%
!!! AACAAAAATATTTTGCTAAA+AGG + chr1_3:5761482-5761501 Msa0099530:intron 15.0%
!! ATAAAATAAGGAAAATACTT+AGG + chr1_3:5763367-5763386 Msa0099530:three_prime_UTR 15.0%
!!! ATTTTCAACAAATAAAACCA+TGG + chr1_3:5759151-5759170 Msa0099530:CDS 20.0%
!!! TTTTCAACAAATAAAACCAT+GGG + chr1_3:5759152-5759171 Msa0099530:CDS 20.0%
!! TAAAACAGAGGAAATTAAAA+AGG - chr1_3:5759338-5759357 None:intergenic 20.0%
!! TACTATATCATATAAAACAG+AGG - chr1_3:5759350-5759369 None:intergenic 20.0%
!!! AATCACATACTTTTTTTTAG+AGG - chr1_3:5759858-5759877 None:intergenic 20.0%
!!! AGTTTGTTTTATAATATCAG+GGG + chr1_3:5760004-5760023 Msa0099530:intron 20.0%
!! AATAAGAGAATATTACATCA+AGG - chr1_3:5760206-5760225 None:intergenic 20.0%
!! GATATAAACATTGTATACAT+AGG - chr1_3:5760391-5760410 None:intergenic 20.0%
!!! TTTTCTTTTTAAAATGACGA+TGG - chr1_3:5760459-5760478 None:intergenic 20.0%
!!! GTAATTGGATATTTTTACAA+AGG + chr1_3:5760488-5760507 Msa0099530:intron 20.0%
!! TTTACAAAGGAAAAAACTTA+TGG + chr1_3:5760501-5760520 Msa0099530:intron 20.0%
!! TTGTAAAAGGATAAAAACAT+AGG - chr1_3:5760672-5760691 None:intergenic 20.0%
!!! AGTCTATAAAAAAAGCATAA+TGG - chr1_3:5760707-5760726 None:intergenic 20.0%
!!! CTTTTTTTATAGACTTGATT+GGG + chr1_3:5760712-5760731 Msa0099530:intron 20.0%
!!! GTCATATTCTTATTTTTTTG+GGG + chr1_3:5760911-5760930 Msa0099530:intron 20.0%
!!! TCATATTCTTATTTTTTTGG+GGG + chr1_3:5760912-5760931 Msa0099530:intron 20.0%
!! TAATAATATCCATATTGATG+TGG + chr1_3:5761033-5761052 Msa0099530:intron 20.0%
!! AATAATATCCATATTGATGT+GGG + chr1_3:5761034-5761053 Msa0099530:intron 20.0%
!!! TCCTTATTTTTCTTAAACAA+GGG - chr1_3:5761066-5761085 None:intergenic 20.0%
!! ACAAATAAATTGAGACAAAA+TGG - chr1_3:5761198-5761217 None:intergenic 20.0%
!! AATAAAAAAAATATTCCTGC+AGG + chr1_3:5761623-5761642 Msa0099530:intron 20.0%
!!! AATTTTTTTTTTTGTGTGTG+TGG + chr1_3:5761791-5761810 Msa0099530:intron 20.0%
!! ATGTTAAATAGTGATTAGAT+GGG - chr1_3:5762238-5762257 None:intergenic 20.0%
!! AATGTTAAATAGTGATTAGA+TGG - chr1_3:5762239-5762258 None:intergenic 20.0%
!! CTATAAGAAAACATACAAAA+AGG - chr1_3:5762271-5762290 None:intergenic 20.0%
!!! CTTTTTGTATGTTTTCTTAT+AGG + chr1_3:5762269-5762288 Msa0099530:intron 20.0%
!! AAGTCTAATTATGTTCAATT+GGG - chr1_3:5762493-5762512 None:intergenic 20.0%
!!! AAATTCTTTAAAAATGGACA+CGG - chr1_3:5763038-5763057 None:intergenic 20.0%
!!! GATGTCAAATTCTTTAAAAA+TGG - chr1_3:5763044-5763063 None:intergenic 20.0%
!! ATCCAAATTATTATTGTTTC+AGG + chr1_3:5763061-5763080 Msa0099530:intron 20.0%
!!! TGTTTTCATTAATTTGCATA+TGG + chr1_3:5763277-5763296 Msa0099530:three_prime_UTR 20.0%
!! ATAGTTACCTAGATAAAATA+AGG + chr1_3:5763355-5763374 Msa0099530:three_prime_UTR 20.0%
!!! GTATTTTCCTTATTTTATCT+AGG - chr1_3:5763365-5763384 None:intergenic 20.0%
!!! ATGAGATTTTTAACTTTGAA+TGG - chr1_3:5763627-5763646 None:intergenic 20.0%
!!! ACCATTTATTTAAGATTGAA+CGG + chr1_3:5763663-5763682 Msa0099530:three_prime_UTR 20.0%
!!! GAACGTTTAAAATTGATTTA+GGG - chr1_3:5763704-5763723 None:intergenic 20.0%
!!! AGAACGTTTAAAATTGATTT+AGG - chr1_3:5763705-5763724 None:intergenic 20.0%
!!! AAATCAATTTTAAACGTTCT+CGG + chr1_3:5763705-5763724 Msa0099530:three_prime_UTR 20.0%
!!! AGATTTTTTTTTGATGATGT+GGG + chr1_3:5764350-5764369 Msa0099530:three_prime_UTR 20.0%
!!! TCACTTGTTTCTTTGTTTTA+TGG + chr1_3:5759121-5759140 Msa0099530:exon 25.0%
!!! CACTTGTTTCTTTGTTTTAT+GGG + chr1_3:5759122-5759141 Msa0099530:exon 25.0%
! TCATTAACGTAAAACATTTC+TGG - chr1_3:5759185-5759204 None:intergenic 25.0%
! TCGTAATTTCGATAAATCTA+CGG - chr1_3:5759657-5759676 None:intergenic 25.0%
!!! TTGTTATTTATGCTGCATAT+AGG + chr1_3:5759884-5759903 Msa0099530:intron 25.0%
!!! TGTTGCTATCAATATTTTTG+CGG - chr1_3:5760305-5760324 None:intergenic 25.0%
! TAAACCATACCACTTTATAT+TGG + chr1_3:5760364-5760383 Msa0099530:intron 25.0%
!!! AAACATAGGTGGATTTTTTT+AGG - chr1_3:5760658-5760677 None:intergenic 25.0%
! TAAAAGGATAAAAACATAGG+TGG - chr1_3:5760669-5760688 None:intergenic 25.0%
!!! GCTTTTTTTATAGACTTGAT+TGG + chr1_3:5760711-5760730 Msa0099530:intron 25.0%
!!! CCTTATTTTTCTTAAACAAG+GGG - chr1_3:5761065-5761084 None:intergenic 25.0%
!!! GTCCTTATTTTTCTTAAACA+AGG - chr1_3:5761067-5761086 None:intergenic 25.0%
! AGCAAACTTAAGTCATTTAA+GGG - chr1_3:5761305-5761324 None:intergenic 25.0%
! TAGCAAACTTAAGTCATTTA+AGG - chr1_3:5761306-5761325 None:intergenic 25.0%
!! CTTCACAATTTTGTGTTAAA+GGG + chr1_3:5761845-5761864 Msa0099530:intron 25.0%
! ATGTTAGATAGTTGTTCAAT+AGG + chr1_3:5762048-5762067 Msa0099530:intron 25.0%
! GAAGTCTAATTATGTTCAAT+TGG - chr1_3:5762494-5762513 None:intergenic 25.0%
!! AATTTCTATGCTTTGAATTC+AGG + chr1_3:5762822-5762841 Msa0099530:intron 25.0%
! AGAATTGAAGCAAGAATAAA+AGG + chr1_3:5762889-5762908 Msa0099530:CDS 25.0%
! TGTACAAACCTCAAATTTAA+AGG + chr1_3:5762986-5763005 Msa0099530:intron 25.0%
! AGCCTGAAACAATAATAATT+TGG - chr1_3:5763066-5763085 None:intergenic 25.0%
! AATAATATAGCGCAATACTT+TGG - chr1_3:5763198-5763217 None:intergenic 25.0%
! ATACTTAGGTAAAGTTCTAT+AGG + chr1_3:5763381-5763400 Msa0099530:three_prime_UTR 25.0%
! ACCGTTCAATCTTAAATAAA+TGG - chr1_3:5763667-5763686 None:intergenic 25.0%
!!! TTGCAATTGTTTCTAATACA+AGG - chr1_3:5763751-5763770 None:intergenic 25.0%
! ACAATTGCAAACAAATCAAA+AGG + chr1_3:5763761-5763780 Msa0099530:three_prime_UTR 25.0%
! TTTAACTAAGTTCTCTTAAC+AGG + chr1_3:5763842-5763861 Msa0099530:three_prime_UTR 25.0%
!!! AGCAAAAAGTTTTTAAGAGA+TGG + chr1_3:5763935-5763954 Msa0099530:three_prime_UTR 25.0%
! ACCAAACCAATAATCAATAA+TGG - chr1_3:5764224-5764243 None:intergenic 25.0%
!!! GAGATTTTTTTTTGATGATG+TGG + chr1_3:5764349-5764368 Msa0099530:three_prime_UTR 25.0%
AACAAAGAAACAAGTGACAA+TGG - chr1_3:5759118-5759137 None:intergenic 30.0%
!!! TTGTTTCTTTGTTTTATGGG+AGG + chr1_3:5759125-5759144 Msa0099530:exon 30.0%
TTACGTTAATGAGTTTGCAA+AGG + chr1_3:5759193-5759212 Msa0099530:CDS 30.0%
!! TCATTGATGATGATCTCAAA+TGG + chr1_3:5759282-5759301 Msa0099530:CDS 30.0%
TTTGGATGACATAAAAGAGA+GGG - chr1_3:5759981-5760000 None:intergenic 30.0%
!! TTGTTTTATAATATCAGGGG+AGG + chr1_3:5760007-5760026 Msa0099530:intron 30.0%
TACATAGGTCCAATATAAAG+TGG - chr1_3:5760376-5760395 None:intergenic 30.0%
! ACTCTTTTATACTCTCTTGT+TGG - chr1_3:5760413-5760432 None:intergenic 30.0%
!! GCGTGCTATTAATTTGTAAA+AGG - chr1_3:5760685-5760704 None:intergenic 30.0%
GATTATGTTTGATGAAACCT+TGG + chr1_3:5760734-5760753 Msa0099530:intron 30.0%
! TAAGTTTTCAATTTGAGGGA+CGG - chr1_3:5761012-5761031 None:intergenic 30.0%
! CCCCTTGTTTAAGAAAAATA+AGG + chr1_3:5761062-5761081 Msa0099530:intron 30.0%
TTAAGTCATTTAAGGGATAC+TGG - chr1_3:5761298-5761317 None:intergenic 30.0%
TGGTAAGAATTTGTAAGACA+TGG + chr1_3:5761534-5761553 Msa0099530:intron 30.0%
AAAAAAAATATTCCTGCAGG+AGG + chr1_3:5761626-5761645 Msa0099530:intron 30.0%
AAAATACCTGGTTGCAAATA+AGG + chr1_3:5761665-5761684 Msa0099530:CDS 30.0%
! GCTTCACAATTTTGTGTTAA+AGG + chr1_3:5761844-5761863 Msa0099530:intron 30.0%
GAGAAGTTTGATATCATTGT+TGG + chr1_3:5761888-5761907 Msa0099530:CDS 30.0%
TGATATCATTGTTGGAGATT+TGG + chr1_3:5761896-5761915 Msa0099530:CDS 30.0%
TTCAAAATCGATCACTTGAT+TGG - chr1_3:5762169-5762188 None:intergenic 30.0%
AAAGCGTGGTAACAAAAATA+TGG - chr1_3:5762207-5762226 None:intergenic 30.0%
! TTGTATGTTTTCTTATAGGC+TGG + chr1_3:5762273-5762292 Msa0099530:intron 30.0%
!!! TTTTATGGTGTTGTGTATAG+AGG - chr1_3:5762334-5762353 None:intergenic 30.0%
TATACACAACACCATAAAAC+AGG + chr1_3:5762335-5762354 Msa0099530:CDS 30.0%
! ACATTTGAAGACCTGTTTTA+TGG - chr1_3:5762349-5762368 None:intergenic 30.0%
! ACCTCAAATCTTTTACTAGT+AGG + chr1_3:5762381-5762400 Msa0099530:intron 30.0%
ACCTACTAGTAAAAGATTTG+AGG - chr1_3:5762385-5762404 None:intergenic 30.0%
!! TAGTAGGTGTTTGTTATAAC+CGG + chr1_3:5762397-5762416 Msa0099530:intron 30.0%
ACACTTGTTCAAACAAAACA+TGG + chr1_3:5762552-5762571 Msa0099530:intron 30.0%
TATTCATGATGGTAGATGAA+TGG - chr1_3:5762945-5762964 None:intergenic 30.0%
AAATGGTTAAATTACACCAG+AGG - chr1_3:5763013-5763032 None:intergenic 30.0%
TAAAAATGGACACGGTTAAA+TGG - chr1_3:5763030-5763049 None:intergenic 30.0%
GATAATGCTAGATTTATTCC+TGG + chr1_3:5763114-5763133 Msa0099530:CDS 30.0%
! TTAGTCCAGATTTGACTTTA+AGG + chr1_3:5763216-5763235 Msa0099530:three_prime_UTR 30.0%
ATTGACCTTAAAGTCAAATC+TGG - chr1_3:5763224-5763243 None:intergenic 30.0%
! TTTTATCTAGGTAACTATGC+TGG - chr1_3:5763353-5763372 None:intergenic 30.0%
TCCAAATTGTTTCATCAACT+TGG + chr1_3:5763564-5763583 Msa0099530:three_prime_UTR 30.0%
ATTGCAAACAAATCAAAAGG+TGG + chr1_3:5763764-5763783 Msa0099530:three_prime_UTR 30.0%
GTTGTTCTTACAGCTATATT+GGG - chr1_3:5763896-5763915 Msa0099540:CDS 30.0%
TGTTGTTCTTACAGCTATAT+TGG - chr1_3:5763897-5763916 Msa0099540:CDS 30.0%
TTGAAAGACAAAACAGTGAA+GGG - chr1_3:5764034-5764053 Msa0099540:CDS 30.0%
ATTGAAAGACAAAACAGTGA+AGG - chr1_3:5764035-5764054 Msa0099540:CDS 30.0%
! CTGAAGCCATTATTGATTAT+TGG + chr1_3:5764215-5764234 Msa0099530:three_prime_UTR 30.0%
! GCCATTATTGATTATTGGTT+TGG + chr1_3:5764220-5764239 Msa0099530:three_prime_UTR 30.0%
! AGATAAGTTTTTGTGATGCA+TGG + chr1_3:5764258-5764277 Msa0099530:three_prime_UTR 30.0%
ATATGAGGGTTAGATATTAG+TGG + chr1_3:5764287-5764306 Msa0099530:three_prime_UTR 30.0%
AAGAAACAAGTGACAATGGT+GGG - chr1_3:5759114-5759133 None:intergenic 35.0%
AAAGAAACAAGTGACAATGG+TGG - chr1_3:5759115-5759134 None:intergenic 35.0%
AACAAATAAAACCATGGGAG+AGG + chr1_3:5759157-5759176 Msa0099530:CDS 35.0%
AATCATCAACGTTGTTGACA+TGG - chr1_3:5759241-5759260 None:intergenic 35.0%
AATGATTTCCTCATACCATG+TGG - chr1_3:5759267-5759286 None:intergenic 35.0%
AATGGTCCTTTAAACTCAAC+AGG + chr1_3:5759300-5759319 Msa0099530:CDS 35.0%
AACGAACCTGTTGAGTTTAA+AGG - chr1_3:5759309-5759328 None:intergenic 35.0%
TAAAGCGATTAGTGAATACC+AGG + chr1_3:5759509-5759528 Msa0099530:CDS 35.0%
CTTTGGATGACATAAAAGAG+AGG - chr1_3:5759982-5760001 None:intergenic 35.0%
AGGTCCAATATAAAGTGGTA+TGG - chr1_3:5760371-5760390 None:intergenic 35.0%
AACCTTGGACTAATATGAAG+AGG + chr1_3:5760749-5760768 Msa0099530:intron 35.0%
AGGCATGTGTGGTAATATAT+TGG + chr1_3:5760769-5760788 Msa0099530:intron 35.0%
AGTTATGTGCGATATTGACA+AGG + chr1_3:5760876-5760895 Msa0099530:CDS 35.0%
TGCTAAAAGGACAGACAAAA+TGG + chr1_3:5761495-5761514 Msa0099530:intron 35.0%
ATGGAACAGAGAGAGAATAT+TGG + chr1_3:5761514-5761533 Msa0099530:intron 35.0%
! AGCTAGCTCATTTTGCAAAT+AGG + chr1_3:5761740-5761759 Msa0099530:intron 35.0%
! TTTTGTGTGTGTGGATTTCA+TGG + chr1_3:5761800-5761819 Msa0099530:intron 35.0%
GGCTGAATTAGAGAAAAGAA+AGG + chr1_3:5761866-5761885 Msa0099530:CDS 35.0%
CTTCACAACTTTCTCATAGA+AGG - chr1_3:5761967-5761986 None:intergenic 35.0%
! TACAATCTGGAGCGAAATTT+AGG - chr1_3:5762076-5762095 None:intergenic 35.0%
TCAGAAGTTGTGATACAATC+TGG - chr1_3:5762089-5762108 None:intergenic 35.0%
TTGGAAAAAGAATACCAGTC+AGG - chr1_3:5762150-5762169 None:intergenic 35.0%
! AGGTATCTTTTCACACAAAG+AGG + chr1_3:5762302-5762321 Msa0099530:CDS 35.0%
!! AACCGGGTTGAATTTGTTAT+TGG + chr1_3:5762424-5762443 Msa0099530:intron 35.0%
AGCCAATAACAAATTCAACC+CGG - chr1_3:5762429-5762448 None:intergenic 35.0%
! ATGTTTTGCTTACGTGCTTT+TGG + chr1_3:5762639-5762658 Msa0099530:intron 35.0%
!! TACCATCATTTGCTGATTCA+TGG + chr1_3:5762722-5762741 Msa0099530:CDS 35.0%
!! ACCATCATTTGCTGATTCAT+GGG + chr1_3:5762723-5762742 Msa0099530:CDS 35.0%
CAGCATCAATCAATATTGGT+TGG - chr1_3:5762855-5762874 None:intergenic 35.0%
! ACCAATATTGATTGATGCTG+TGG + chr1_3:5762855-5762874 Msa0099530:CDS 35.0%
TCCACAGCATCAATCAATAT+TGG - chr1_3:5762859-5762878 None:intergenic 35.0%
ATTGATTGATGCTGTGGAAA+TGG + chr1_3:5762861-5762880 Msa0099530:CDS 35.0%
GGAAAATTGCTCTATCTAGA+CGG + chr1_3:5762910-5762929 Msa0099530:CDS 35.0%
GTACACTTACGATTTGAACA+CGG - chr1_3:5762971-5762990 None:intergenic 35.0%
GAGTCATTTCCTTTCCTTTA+GGG - chr1_3:5763159-5763178 None:intergenic 35.0%
AGAGTCATTTCCTTTCCTTT+AGG - chr1_3:5763160-5763179 None:intergenic 35.0%
AATATAGCGCAATACTTTGG+AGG - chr1_3:5763195-5763214 None:intergenic 35.0%
!! TGACTTTAAGGTCAATCTGT+AGG + chr1_3:5763228-5763247 Msa0099530:three_prime_UTR 35.0%
!! GACTTTAAGGTCAATCTGTA+GGG + chr1_3:5763229-5763248 Msa0099530:three_prime_UTR 35.0%
AACCTGATGAATTGTGTCTA+AGG + chr1_3:5763495-5763514 Msa0099530:three_prime_UTR 35.0%
!! GCCAAGTTGATGAAACAATT+TGG - chr1_3:5763568-5763587 None:intergenic 35.0%
CTATGTTGTCACAATCTCAA+AGG - chr1_3:5763822-5763841 None:intergenic 35.0%
TCTCTTAACAGGATCAAAGT+TGG + chr1_3:5763853-5763872 Msa0099530:three_prime_UTR 35.0%
! TTTTGCATTAACAGCCTCTA+TGG - chr1_3:5764002-5764021 Msa0099540:CDS 35.0%
ATGATGCTTGAATTCCAACA+AGG + chr1_3:5764053-5764072 Msa0099530:three_prime_UTR 35.0%
ACTTCAAAATCCAACCTTGT+TGG - chr1_3:5764070-5764089 Msa0099540:CDS 35.0%
! AAGGATTGTGAAGGTTTTTG+TGG + chr1_3:5764155-5764174 Msa0099530:three_prime_UTR 35.0%
! AGGATTGTGAAGGTTTTTGT+GGG + chr1_3:5764156-5764175 Msa0099530:three_prime_UTR 35.0%
! AAGTTTTTGTGATGCATGGT+TGG + chr1_3:5764262-5764281 Msa0099530:three_prime_UTR 35.0%
ATGCATGGTTGGATATATGA+GGG + chr1_3:5764273-5764292 Msa0099530:three_prime_UTR 35.0%
TTAGTGGTTGAAGAAATGTG+TGG + chr1_3:5764303-5764322 Msa0099530:three_prime_UTR 35.0%
GTTGAAGAAATGTGTGGAAT+TGG + chr1_3:5764309-5764328 Msa0099530:three_prime_UTR 35.0%
ATTGGATGTGAGATGGAAAA+TGG + chr1_3:5764327-5764346 Msa0099530:three_prime_UTR 35.0%
!! CATGGTTTGGTTGAACTTCA+GGG - chr1_3:5759223-5759242 None:intergenic 40.0%
!! ACATGGTTTGGTTGAACTTC+AGG - chr1_3:5759224-5759243 None:intergenic 40.0%
TCAACGTTGTTGACATGGTT+TGG - chr1_3:5759236-5759255 None:intergenic 40.0%
!! ACGTTGATGATTCTTCCACA+TGG + chr1_3:5759249-5759268 Msa0099530:CDS 40.0%
TGATTCTTCCACATGGTATG+AGG + chr1_3:5759256-5759275 Msa0099530:CDS 40.0%
!!! ATTTTGATTCGCAACGAGTG+TGG - chr1_3:5759695-5759714 None:intergenic 40.0%
!! ATATAGGCGTTGATGCTTGA+TGG + chr1_3:5759900-5759919 Msa0099530:intron 40.0%
GAGTCTGACAAAAGTAAGTG+TGG + chr1_3:5760429-5760448 Msa0099530:intron 40.0%
TGCCTCTTCATATTAGTCCA+AGG - chr1_3:5760754-5760773 None:intergenic 40.0%
! CTAATATGAAGAGGCATGTG+TGG + chr1_3:5760758-5760777 Msa0099530:intron 40.0%
CCATTATAAACACCGTCTTG+GGG - chr1_3:5760798-5760817 None:intergenic 40.0%
CCCATTATAAACACCGTCTT+GGG - chr1_3:5760799-5760818 None:intergenic 40.0%
CCCAAGACGGTGTTTATAAT+GGG + chr1_3:5760796-5760815 Msa0099530:CDS 40.0%
TCCCATTATAAACACCGTCT+TGG - chr1_3:5760800-5760819 None:intergenic 40.0%
! AAGACGGTGTTTATAATGGG+AGG + chr1_3:5760799-5760818 Msa0099530:CDS 40.0%
! TTTATAATGGGAGGTGGTGA+AGG + chr1_3:5760808-5760827 Msa0099530:CDS 40.0%
AAAAATATTCCTGCAGGAGG+TGG + chr1_3:5761629-5761648 Msa0099530:intron 40.0%
GGATTTCTGCAGAAAATACC+TGG + chr1_3:5761653-5761672 Msa0099530:CDS 40.0%
ATACCTGGTTGCAAATAAGG+AGG + chr1_3:5761668-5761687 Msa0099530:CDS 40.0%
!! ACTTTGCACAGTTGATGACA+AGG - chr1_3:5761716-5761735 None:intergenic 40.0%
TTAGTGTAGAGCTGATAGCA+AGG - chr1_3:5761942-5761961 None:intergenic 40.0%
AAGCCTAAACTCACTGACAA+TGG + chr1_3:5761984-5762003 Msa0099530:CDS 40.0%
ATGCCATTGTCAGTGAGTTT+AGG - chr1_3:5761990-5762009 None:intergenic 40.0%
TGTTCCTCAAAAGTCTACCT+GGG - chr1_3:5762021-5762040 None:intergenic 40.0%
GTCAGGAGTTACAACTCAAT+CGG - chr1_3:5762133-5762152 None:intergenic 40.0%
! ATTGAGTTGTAACTCCTGAC+TGG + chr1_3:5762133-5762152 Msa0099530:intron 40.0%
TTGTGTGAAAAGATACCTGC+TGG - chr1_3:5762300-5762319 None:intergenic 40.0%
TTGTTATAACCGGATCGAAC+CGG + chr1_3:5762407-5762426 Msa0099530:intron 40.0%
TTCGTTCCTTCTTTCCCATT+TGG + chr1_3:5762670-5762689 Msa0099530:intron 40.0%
!! CCATCATTTGCTGATTCATG+GGG + chr1_3:5762724-5762743 Msa0099530:CDS 40.0%
!! ATTTGCTGATTCATGGGGAT+GGG + chr1_3:5762729-5762748 Msa0099530:CDS 40.0%
!! GAACACGGTCTTATTCATGA+TGG - chr1_3:5762956-5762975 None:intergenic 40.0%
CCAGAGGTCCTTTAAATTTG+AGG - chr1_3:5762997-5763016 None:intergenic 40.0%
CCTCAAATTTAAAGGACCTC+TGG + chr1_3:5762994-5763013 Msa0099530:intron 40.0%
GCTAGATTTATTCCTGGTCA+TGG + chr1_3:5763120-5763139 Msa0099530:CDS 40.0%
TGCCTTAGACACAATTCATC+AGG - chr1_3:5763500-5763519 None:intergenic 40.0%
! GATGAATTGTGTCTAAGGCA+CGG + chr1_3:5763500-5763519 Msa0099530:three_prime_UTR 40.0%
! ATCAACTTGGCTTGAGTAGT+AGG + chr1_3:5763577-5763596 Msa0099530:three_prime_UTR 40.0%
TAAACGTTCTCGGCAATTGT+TGG + chr1_3:5763715-5763734 Msa0099530:three_prime_UTR 40.0%
! TTTTTGCTTAGCATTGCTGC+TGG - chr1_3:5763923-5763942 Msa0099540:CDS 40.0%
AACATCTGGTAACACCATAG+AGG + chr1_3:5763985-5764004 Msa0099530:three_prime_UTR 40.0%
TGCTTGAATTCCAACAAGGT+TGG + chr1_3:5764057-5764076 Msa0099530:three_prime_UTR 40.0%
ACTAGTGTCTTCTTTGCTTG+TGG + chr1_3:5764100-5764119 Msa0099530:three_prime_UTR 40.0%
TGTCTTCTTTGCTTGTGGAA+AGG + chr1_3:5764105-5764124 Msa0099530:three_prime_UTR 40.0%
GTCTTCTTTGCTTGTGGAAA+GGG + chr1_3:5764106-5764125 Msa0099530:three_prime_UTR 40.0%
AAAGGGCAATGGTTTCAAGA+AGG + chr1_3:5764123-5764142 Msa0099530:three_prime_UTR 40.0%
AAGGGCAATGGTTTCAAGAA+GGG + chr1_3:5764124-5764143 Msa0099530:three_prime_UTR 40.0%
! ATTGTGAAGGTTTTTGTGGG+TGG + chr1_3:5764159-5764178 Msa0099530:three_prime_UTR 40.0%
GATGCATGGTTGGATATATG+AGG + chr1_3:5764272-5764291 Msa0099530:three_prime_UTR 40.0%
ATACCAGGACATTGCTCTCT+TGG + chr1_3:5759524-5759543 Msa0099530:CDS 45.0%
TATCCAAGAGAGCAATGTCC+TGG - chr1_3:5759530-5759549 None:intergenic 45.0%
! CTCTTGGATACCAAGCGTTT+TGG + chr1_3:5759540-5759559 Msa0099530:CDS 45.0%
!!! GGATACCAAGCGTTTTGGAA+AGG + chr1_3:5759545-5759564 Msa0099530:CDS 45.0%
GCAAACCTTTCCAAAACGCT+TGG - chr1_3:5759553-5759572 None:intergenic 45.0%
ATATATTGGCAGCCCCAAGA+CGG + chr1_3:5760783-5760802 Msa0099530:intron 45.0%
CCCCAAGACGGTGTTTATAA+TGG + chr1_3:5760795-5760814 Msa0099530:CDS 45.0%
! ACGGTGTTTATAATGGGAGG+TGG + chr1_3:5760802-5760821 Msa0099530:CDS 45.0%
AGCTCTCAAGCACAAGTCAA+TGG + chr1_3:5760846-5760865 Msa0099530:CDS 45.0%
! ATGCCTCCTTATTTGCAACC+AGG - chr1_3:5761674-5761693 None:intergenic 45.0%
AGCAAGGACCATCTTCAAGT+GGG - chr1_3:5761926-5761945 None:intergenic 45.0%
TAGCAAGGACCATCTTCAAG+TGG - chr1_3:5761927-5761946 None:intergenic 45.0%
! CAATGGCATTTTTGTGACCC+AGG + chr1_3:5762001-5762020 Msa0099530:CDS 45.0%
GTGTTCCTCAAAAGTCTACC+TGG - chr1_3:5762022-5762041 None:intergenic 45.0%
TGTTATAACCGGATCGAACC+GGG + chr1_3:5762408-5762427 Msa0099530:intron 45.0%
! AAATTCAACCCGGTTCGATC+CGG - chr1_3:5762419-5762438 None:intergenic 45.0%
TCTGCACCAAATGGGAAAGA+AGG - chr1_3:5762679-5762698 None:intergenic 45.0%
!! TTTCCCATTTGGTGCAGATG+TGG + chr1_3:5762681-5762700 Msa0099530:intron 45.0%
CCCCATGAATCAGCAAATGA+TGG - chr1_3:5762727-5762746 None:intergenic 45.0%
!! CATTTGCTGATTCATGGGGA+TGG + chr1_3:5762728-5762747 Msa0099530:CDS 45.0%
!! TGATTCATGGGGATGGGTTA+TGG + chr1_3:5762735-5762754 Msa0099530:CDS 45.0%
!! GCTATATTGGGTGCTGTTGT+TGG - chr1_3:5763884-5763903 Msa0099540:CDS 45.0%
TTTGCTTGTGGAAAGGGCAA+TGG + chr1_3:5764112-5764131 Msa0099530:three_prime_UTR 45.0%
CAATGGTTTCAAGAAGGGTG+TGG + chr1_3:5764129-5764148 Msa0099530:three_prime_UTR 45.0%
! AAGGTTTTTGTGGGTGGCTT+GGG + chr1_3:5764165-5764184 Msa0099530:three_prime_UTR 45.0%
GTGTGGAATTGGATGTGAGA+TGG + chr1_3:5764320-5764339 Msa0099530:three_prime_UTR 45.0%
!!! AAGTTTTTTTTTTTTTTTTA+GGG + chr1_3:5761366-5761385 Msa0099530:intron 5.0%
!!! TTATTATTGAATTATTTTAT+GGG - chr1_3:5763539-5763558 None:intergenic 5.0%
!!! TTTATTATTGAATTATTTTA+TGG - chr1_3:5763540-5763559 None:intergenic 5.0%
TGGTGAAGGTTCAGCAGCTA+GGG + chr1_3:5760822-5760841 Msa0099530:CDS 50.0%
AATATTCCTGCAGGAGGTGG+TGG + chr1_3:5761632-5761651 Msa0099530:intron 50.0%
TTGGCTGACCCACTTGAAGA+TGG + chr1_3:5761915-5761934 Msa0099530:CDS 50.0%
! GTGACCCAGGTAGACTTTTG+AGG + chr1_3:5762014-5762033 Msa0099530:intron 50.0%
GATGGGTAGTGAGAAAAGCG+TGG - chr1_3:5762221-5762240 None:intergenic 50.0%
TTCTTATAGGCTGGACCAGC+AGG + chr1_3:5762282-5762301 Msa0099530:intron 50.0%
CCACCACATCTGCACCAAAT+GGG - chr1_3:5762687-5762706 None:intergenic 50.0%
TGCTCTATCTAGACGGTGCT+TGG + chr1_3:5762917-5762936 Msa0099530:CDS 50.0%
GCATAGCATGTCGTCCCTAA+AGG + chr1_3:5763142-5763161 Msa0099530:CDS 50.0%
GCATGTCGTCCCTAAAGGAA+AGG + chr1_3:5763147-5763166 Msa0099530:exon 50.0%
TTGCTTAGCATTGCTGCTGG+TGG - chr1_3:5763920-5763939 Msa0099540:CDS 50.0%
! TGGTTTCAAGAAGGGTGTGG+TGG + chr1_3:5764132-5764151 Msa0099530:three_prime_UTR 50.0%
! TTCAAGAAGGGTGTGGTGGA+AGG + chr1_3:5764136-5764155 Msa0099530:three_prime_UTR 50.0%
! GTGTGGTGGAAGGATTGTGA+AGG + chr1_3:5764146-5764165 Msa0099530:three_prime_UTR 50.0%
! GAAGGTTTTTGTGGGTGGCT+TGG + chr1_3:5764164-5764183 Msa0099530:three_prime_UTR 50.0%
GGTGGGTGCAAAGTGCAATG+TGG - chr1_3:5759097-5759116 None:intergenic 55.0%
!! CATTTCTGGTGCCTCTCCCA+TGG - chr1_3:5759171-5759190 None:intergenic 55.0%
CAACGAGTGTGGCACGATCA+CGG - chr1_3:5759684-5759703 None:intergenic 55.0%
GTGGTGAAGGTTCAGCAGCT+AGG + chr1_3:5760821-5760840 Msa0099530:CDS 55.0%
! GGGCACTGCCCACATCAATA+TGG - chr1_3:5761045-5761064 None:intergenic 55.0%
AGAAATCCACCACCTCCTGC+AGG - chr1_3:5761641-5761660 None:intergenic 55.0%
!! CCCATTTGGTGCAGATGTGG+TGG + chr1_3:5762684-5762703 Msa0099530:intron 55.0%
GCCACCACATCTGCACCAAA+TGG - chr1_3:5762688-5762707 None:intergenic 55.0%
CGACATGCTATGCCATGACC+AGG - chr1_3:5763135-5763154 None:intergenic 55.0%
CCAGATGTTGCTCATGCAGC+TGG - chr1_3:5763974-5763993 Msa0099540:CDS 55.0%
CCAGCTGCATGAGCAACATC+TGG + chr1_3:5763971-5763990 Msa0099530:three_prime_UTR 55.0%
! TTGTGGGTGGCTTGGGTTAG+TGG + chr1_3:5764172-5764191 Msa0099530:three_prime_UTR 55.0%
CGAGTGTGGCACGATCACGG+TGG - chr1_3:5759681-5759700 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 5759094 5764377 5759094 ID=Msa0099530;Name=Msa0099530
chr1_3 mRNA 5759094 5764377 5759094 ID=Msa0099530-mRNA-1;Parent=Msa0099530;Name=Msa0099530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=46|1|1|1|1|1|10|1216|347
chr1_3 exon 5759094 5759321 5759094 ID=Msa0099530-mRNA-1:exon:2177;Parent=Msa0099530-mRNA-1
chr1_3 exon 5759500 5759566 5759500 ID=Msa0099530-mRNA-1:exon:2178;Parent=Msa0099530-mRNA-1
chr1_3 exon 5759906 5760000 5759906 ID=Msa0099530-mRNA-1:exon:2179;Parent=Msa0099530-mRNA-1
chr1_3 exon 5760795 5760897 5760795 ID=Msa0099530-mRNA-1:exon:2180;Parent=Msa0099530-mRNA-1
chr1_3 exon 5761645 5761733 5761645 ID=Msa0099530-mRNA-1:exon:2181;Parent=Msa0099530-mRNA-1
chr1_3 exon 5761866 5762022 5761866 ID=Msa0099530-mRNA-1:exon:2182;Parent=Msa0099530-mRNA-1
chr1_3 exon 5762291 5762366 5762291 ID=Msa0099530-mRNA-1:exon:2183;Parent=Msa0099530-mRNA-1
chr1_3 exon 5762698 5762756 5762698 ID=Msa0099530-mRNA-1:exon:2184;Parent=Msa0099530-mRNA-1
chr1_3 exon 5762844 5762980 5762844 ID=Msa0099530-mRNA-1:exon:2185;Parent=Msa0099530-mRNA-1
chr1_3 exon 5763083 5764377 5763083 ID=Msa0099530-mRNA-1:exon:2186;Parent=Msa0099530-mRNA-1
chr1_3 five_prime_UTR 5759094 5759139 5759094 ID=Msa0099530-mRNA-1:five_prime_utr;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5759140 5759321 5759140 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5759500 5759566 5759500 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5759906 5760000 5759906 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5760795 5760897 5760795 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5761645 5761733 5761645 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5761866 5762022 5761866 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5762291 5762366 5762291 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5762698 5762756 5762698 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5762844 5762980 5762844 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 CDS 5763083 5763161 5763083 ID=Msa0099530-mRNA-1:cds;Parent=Msa0099530-mRNA-1
chr1_3 three_prime_UTR 5763162 5764377 5763162 ID=Msa0099530-mRNA-1:three_prime_utr;Parent=Msa0099530-mRNA-1
Gene Sequence

>Msa0099530

ATGGGAGGTGTATTTTCAACAAATAAAACCATGGGAGAGGCACCAGAAATGTTTTACGTTAATGAGTTTGCAAAGGTTGTCCCTGAAGTTCAACCAAACCATGTCAACAACGTTGATGATTCTTCCACATGGTATGAGGAAATCATTGATGATGATCTCAAATGGTCCTTTAAACTCAACAGTGTGCTTCATAAAGCGATTAGTGAATACCAGGACATTGCTCTCTTGGATACCAAGCGTTTTGGAAAGGCGTTGATGCTTGATGGAAAGATGCAGAGTTCTGAAGCAGATGAATTCATTTATCATGAATGCTTGATTCATCCCTCTCTTTTATGTCATCCAAACCCCAAGACGGTGTTTATAATGGGAGGTGGTGAAGGTTCAGCAGCTAGGGAAGCTCTCAAGCACAAGTCAATGGACAAAGTAGTTATGTGCGATATTGACAAGGAGGTGGTGGATTTCTGCAGAAAATACCTGGTTGCAAATAAGGAGGCATTTGCTGACAAGAAGCTCGACCTTGTCATCAACTGTGCAAAGGCTGAATTAGAGAAAAGAAAGGAGAAGTTTGATATCATTGTTGGAGATTTGGCTGACCCACTTGAAGATGGTCCTTGCTATCAGCTCTACACTAAGTCCTTCTATGAGAAAGTTGTGAAGCCTAAACTCACTGACAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGTATCTTTTCACACAAAGAGGTCTTCACCTCTATACACAACACCATAAAACAGGTCTTCAAATATGTGGTGGCATACTCGACTCATGTACCATCATTTGCTGATTCATGGGGATGGGTTATGGCTTCAGACCAACCAATATTGATTGATGCTGTGGAAATGGACAAAAGAATTGAAGCAAGAATAAAAGGAAAATTGCTCTATCTAGACGGTGCTTGGTTCCATTCATCTACCATCATGAATAAGACCGTGTTCAAATCGCTGAAGAATGAAACTCATGTTTACACTGAAGATAATGCTAGATTTATTCCTGGTCATGGCATAGCATGTCGTCCCTAA

Protein sequence

>Msa0099530

MGGVFSTNKTMGEAPEMFYVNEFAKVVPEVQPNHVNNVDDSSTWYEEIIDDDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALMLDGKMQSSEADEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALKHKSMDKVVMCDIDKEVVDFCRKYLVANKEAFADKKLDLVINCAKAELEKRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKVVKPKLTDNGIFVTQAGPAGIFSHKEVFTSIHNTIKQVFKYVVAYSTHVPSFADSWGWVMASDQPILIDAVEMDKRIEARIKGKLLYLDGAWFHSSTIMNKTVFKSLKNETHVYTEDNARFIPGHGIACRP*