AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0148140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148140 MtrunA17_Chr1g0150851 97.118 347 10 0 1 347 1 347 0.0 701
Msa0148140 MtrunA17_Chr5g0394371 68.106 301 96 0 42 342 25 325 3.68e-156 441
Msa0148140 MtrunA17_Chr3g0136181 78.788 198 42 0 149 346 30 227 7.61e-118 340
Msa0148140 MtrunA17_Chr5g0413701 33.212 274 164 10 21 285 33 296 1.37e-38 140
Msa0148140 MtrunA17_Chr8g0365071 31.200 250 156 8 44 285 54 295 3.33e-35 131
Msa0148140 MtrunA17_Chr3g0117881 32.203 177 116 3 57 232 59 232 5.83e-25 103
Msa0148140 MtrunA17_Chr3g0126551 28.723 282 190 8 56 332 83 358 4.27e-23 98.6
Msa0148140 MtrunA17_Chr1g0158851 30.337 267 177 7 56 320 88 347 5.38e-22 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148140 AT5G19530.1 69.027 339 100 2 11 346 1 337 1.61e-176 493
Msa0148140 AT5G19530.2 70.462 325 94 1 22 346 8 330 1.35e-173 485
Msa0148140 AT1G23820.2 34.667 225 139 6 56 277 105 324 7.54e-40 143
Msa0148140 AT1G23820.1 34.419 215 134 5 56 268 61 270 3.61e-37 136
Msa0148140 AT1G70310.1 31.600 250 155 8 44 285 51 292 1.67e-35 132
Msa0148140 AT5G53120.1 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0148140 AT5G53120.4 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0148140 AT5G53120.2 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0148140 AT5G53120.5 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0148140 AT5G53120.3 31.128 257 162 6 56 310 84 327 1.88e-23 100
Msa0148140 AT5G53120.7 31.128 257 162 6 56 310 101 344 2.47e-23 99.8
Msa0148140 AT5G53120.6 28.169 284 162 8 56 310 84 354 9.51e-20 89.7

Find 142 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACGTTTAAAATTGATTT+AGG 0.128410 1_4:-8422868 None:intergenic
CTGAAGCCATTATTGATTAT+TGG 0.166298 1_4:+8423381 Msa0148140:three_prime_UTR
AACGAACCTGTTGAGTTTAA+AGG 0.204551 1_4:-8418455 None:intergenic
TCATTAACGTAAAACATTTC+TGG 0.211926 1_4:-8418331 None:intergenic
GAGTCATTTCCTTTCCTTTA+GGG 0.233373 1_4:-8422322 None:intergenic
AAAATACCTGGTTGCAAATA+AGG 0.242099 1_4:+8420832 Msa0148140:CDS
GCCAAGTTGATGAAACAATT+TGG 0.248516 1_4:-8422731 None:intergenic
TTGTGGGTGGCTTGGGTTAG+TGG 0.257951 1_4:+8423338 Msa0148140:three_prime_UTR
TTAGTCCAGATTTGACTTTA+AGG 0.259268 1_4:+8422382 Msa0148140:three_prime_UTR
ACATGGTTTGGTTGAACTTC+AGG 0.282517 1_4:-8418370 None:intergenic
AGAATTGAAGCAAGAATAAA+AGG 0.285461 1_4:+8422055 Msa0148140:CDS
TTTAACTAAGTTCTCTTAAC+AGG 0.285839 1_4:+8423008 Msa0148140:three_prime_UTR
TCCACAGCATCAATCAATAT+TGG 0.287518 1_4:-8422022 None:intergenic
TGTTGTTCTTACAGCTATAT+TGG 0.300493 1_4:-8423060 Msa0148150:CDS
CCCCAAGACGGTGTTTATAA+TGG 0.300655 1_4:+8419962 Msa0148140:CDS
CCCATTATAAACACCGTCTT+GGG 0.300710 1_4:-8419963 None:intergenic
GCCATTATTGATTATTGGTT+TGG 0.302420 1_4:+8423386 Msa0148140:three_prime_UTR
CTCTTGGATACCAAGCGTTT+TGG 0.310020 1_4:+8418707 Msa0148140:CDS
AGAGTCATTTCCTTTCCTTT+AGG 0.310534 1_4:-8422323 None:intergenic
GAACGTTTAAAATTGATTTA+GGG 0.321829 1_4:-8422867 None:intergenic
TGATATCATTGTTGGAGATT+TGG 0.339425 1_4:+8421062 Msa0148140:CDS
GTTGTTCTTACAGCTATATT+GGG 0.346937 1_4:-8423059 Msa0148150:CDS
GTCTTCTTTGCTTGTGGAAA+GGG 0.349407 1_4:+8423272 Msa0148140:three_prime_UTR
ATTGGATGTGAGATGGAAAA+TGG 0.349509 1_4:+8423493 Msa0148140:three_prime_UTR
CTTCACAACTTTCTCATAGA+AGG 0.351490 1_4:-8421130 None:intergenic
TACCATCATTTGCTGATTCA+TGG 0.351693 1_4:+8421888 Msa0148140:CDS
ATGCCATTGTCAGTGAGTTT+AGG 0.356612 1_4:-8421153 None:intergenic
TGATTCATGGGGATGGGTTA+TGG 0.358644 1_4:+8421901 Msa0148140:CDS
ACCGTTCAATCTTAAATAAA+TGG 0.363219 1_4:-8422830 None:intergenic
GAGAAGTTTGATATCATTGT+TGG 0.364473 1_4:+8421054 Msa0148140:CDS
ACCAAACCAATAATCAATAA+TGG 0.366810 1_4:-8423387 None:intergenic
ATAGTTACCTAGATAAAATA+AGG 0.367155 1_4:+8422521 Msa0148140:three_prime_UTR
GCTATATTGGGTGCTGTTGT+TGG 0.379016 1_4:-8423047 Msa0148150:CDS
ATCAACTTGGCTTGAGTAGT+AGG 0.380131 1_4:+8422743 Msa0148140:three_prime_UTR
ACTTCAAAATCCAACCTTGT+TGG 0.385727 1_4:-8423233 Msa0148150:CDS
GTTGAAGAAATGTGTGGAAT+TGG 0.387818 1_4:+8423475 Msa0148140:three_prime_UTR
TTCTTATAGGCTGGACCAGC+AGG 0.390978 1_4:+8421448 Msa0148140:intron
AACCTGATGAATTGTGTCTA+AGG 0.394713 1_4:+8422661 Msa0148140:three_prime_UTR
AATGGTCCTTTAAACTCAAC+AGG 0.400428 1_4:+8418449 Msa0148140:CDS
ATACTTAGGTAAAGTTCTAT+AGG 0.406545 1_4:+8422547 Msa0148140:three_prime_UTR
ATACCAGGACATTGCTCTCT+TGG 0.416640 1_4:+8418691 Msa0148140:CDS
TGCTCTATCTAGACGGTGCT+TGG 0.419252 1_4:+8422083 Msa0148140:CDS
AATAATATAGCGCAATACTT+TGG 0.419360 1_4:-8422361 None:intergenic
ATTGACCTTAAAGTCAAATC+TGG 0.420822 1_4:-8422387 None:intergenic
CCCAAGACGGTGTTTATAAT+GGG 0.420987 1_4:+8419963 Msa0148140:CDS
TCCAAATTGTTTCATCAACT+TGG 0.421237 1_4:+8422730 Msa0148140:three_prime_UTR
ATTGATTGATGCTGTGGAAA+TGG 0.421971 1_4:+8422027 Msa0148140:CDS
ACTAGTGTCTTCTTTGCTTG+TGG 0.430477 1_4:+8423266 Msa0148140:three_prime_UTR
CATTTGCTGATTCATGGGGA+TGG 0.430597 1_4:+8421894 Msa0148140:CDS
GATAATGCTAGATTTATTCC+TGG 0.440598 1_4:+8422280 Msa0148140:CDS
CATGGTTTGGTTGAACTTCA+GGG 0.443362 1_4:-8418369 None:intergenic
TGATTCTTCCACATGGTATG+AGG 0.443438 1_4:+8418405 Msa0148140:CDS
TGCCTTAGACACAATTCATC+AGG 0.445100 1_4:-8422663 None:intergenic
CCAGATGTTGCTCATGCAGC+TGG 0.445643 1_4:-8423137 Msa0148150:CDS
TATACACAACACCATAAAAC+AGG 0.448583 1_4:+8421501 Msa0148140:CDS
TCAACGTTGTTGACATGGTT+TGG 0.458692 1_4:-8418382 None:intergenic
GATGCATGGTTGGATATATG+AGG 0.459338 1_4:+8423438 Msa0148140:three_prime_UTR
TGTCTTCTTTGCTTGTGGAA+AGG 0.459779 1_4:+8423271 Msa0148140:three_prime_UTR
TTTGCTTGTGGAAAGGGCAA+TGG 0.463285 1_4:+8423278 Msa0148140:three_prime_UTR
AATATTCCTGCAGGAGGTGG+TGG 0.466008 1_4:+8420799 Msa0148140:intron
TCTCTTAACAGGATCAAAGT+TGG 0.467747 1_4:+8423019 Msa0148140:three_prime_UTR
ATATAGGCGTTGATGCTTGA+TGG 0.475521 1_4:+8419067 Msa0148140:intron
TGCTTGAATTCCAACAAGGT+TGG 0.477724 1_4:+8423223 Msa0148140:three_prime_UTR
GACTTTAAGGTCAATCTGTA+GGG 0.481181 1_4:+8422395 Msa0148140:three_prime_UTR
TTCAAGAAGGGTGTGGTGGA+AGG 0.483812 1_4:+8423302 Msa0148140:three_prime_UTR
TGACTTTAAGGTCAATCTGT+AGG 0.485191 1_4:+8422394 Msa0148140:three_prime_UTR
ACCATCATTTGCTGATTCAT+GGG 0.486333 1_4:+8421889 Msa0148140:CDS
ATAAAATAAGGAAAATACTT+AGG 0.486942 1_4:+8422533 Msa0148140:three_prime_UTR
ATATGAGGGTTAGATATTAG+TGG 0.487006 1_4:+8423453 Msa0148140:three_prime_UTR
TGGTGAAGGTTCAGCAGCTA+GGG 0.487536 1_4:+8419989 Msa0148140:CDS
TCCCATTATAAACACCGTCT+TGG 0.488858 1_4:-8419964 None:intergenic
TTGCAATTGTTTCTAATACA+AGG 0.489713 1_4:-8422914 None:intergenic
CCAGCTGCATGAGCAACATC+TGG 0.490868 1_4:+8423137 Msa0148140:three_prime_UTR
TAAACGTTCTCGGCAATTGT+TGG 0.493487 1_4:+8422881 Msa0148140:three_prime_UTR
ACAATTGCAAACAAATCAAA+AGG 0.493565 1_4:+8422927 Msa0148140:three_prime_UTR
CATTTCTGGTGCCTCTCCCA+TGG 0.496543 1_4:-8418317 None:intergenic
TTTATAATGGGAGGTGGTGA+AGG 0.498635 1_4:+8419975 Msa0148140:CDS
TATTCATGATGGTAGATGAA+TGG 0.501719 1_4:-8422108 None:intergenic
CCCATTTGGTGCAGATGTGG+TGG 0.502068 1_4:+8421850 Msa0148140:intron
GGCTGAATTAGAGAAAAGAA+AGG 0.510493 1_4:+8421032 Msa0148140:CDS
GCTAGATTTATTCCTGGTCA+TGG 0.513206 1_4:+8422286 Msa0148140:CDS
ATTTGCTGATTCATGGGGAT+GGG 0.513753 1_4:+8421895 Msa0148140:CDS
ACCATTTATTTAAGATTGAA+CGG 0.515483 1_4:+8422829 Msa0148140:three_prime_UTR
TTGGCTGACCCACTTGAAGA+TGG 0.518779 1_4:+8421081 Msa0148140:CDS
AGCTCTCAAGCACAAGTCAA+TGG 0.518812 1_4:+8420013 Msa0148140:CDS
TCATTGATGATGATCTCAAA+TGG 0.521281 1_4:+8418431 Msa0148140:CDS
GCAAACCTTTCCAAAACGCT+TGG 0.521318 1_4:-8418717 None:intergenic
GCATAGCATGTCGTCCCTAA+AGG 0.523854 1_4:+8422308 Msa0148140:CDS
GTGGTGAAGGTTCAGCAGCT+AGG 0.528642 1_4:+8419988 Msa0148140:CDS
AATCATCAACGTTGTTGACA+TGG 0.529958 1_4:-8418387 None:intergenic
ACCAATATTGATTGATGCTG+TGG 0.532194 1_4:+8422021 Msa0148140:CDS
CCCCATGAATCAGCAAATGA+TGG 0.540394 1_4:-8421890 None:intergenic
CTATGTTGTCACAATCTCAA+AGG 0.546360 1_4:-8422985 None:intergenic
AATATAGCGCAATACTTTGG+AGG 0.553311 1_4:-8422358 None:intergenic
AACAAATAAAACCATGGGAG+AGG 0.560741 1_4:+8418306 Msa0148140:CDS
TTGCTTAGCATTGCTGCTGG+TGG 0.565122 1_4:-8423083 Msa0148150:CDS
CGACATGCTATGCCATGACC+AGG 0.567260 1_4:-8422298 None:intergenic
ATTGAAAGACAAAACAGTGA+AGG 0.569072 1_4:-8423198 Msa0148150:CDS
TTACGTTAATGAGTTTGCAA+AGG 0.578372 1_4:+8418342 Msa0148140:CDS
TTGTGTGAAAAGATACCTGC+TGG 0.579877 1_4:-8421463 None:intergenic
TTGAAAGACAAAACAGTGAA+GGG 0.580339 1_4:-8423197 Msa0148150:CDS
GAACACGGTCTTATTCATGA+TGG 0.581081 1_4:-8422119 None:intergenic
ATGCCTCCTTATTTGCAACC+AGG 0.583465 1_4:-8420838 None:intergenic
AAGGGCAATGGTTTCAAGAA+GGG 0.584655 1_4:+8423290 Msa0148140:three_prime_UTR
CAGCATCAATCAATATTGGT+TGG 0.586960 1_4:-8422018 None:intergenic
GTGTGGAATTGGATGTGAGA+TGG 0.594217 1_4:+8423486 Msa0148140:three_prime_UTR
AAAGGGCAATGGTTTCAAGA+AGG 0.598373 1_4:+8423289 Msa0148140:three_prime_UTR
TATCCAAGAGAGCAATGTCC+TGG 0.598690 1_4:-8418694 None:intergenic
TTTGGATGACATAAAAGAGA+GGG 0.601046 1_4:-8419145 None:intergenic
AAGAAACAAGTGACAATGGT+GGG 0.602709 1_4:-8418260 None:intergenic
GCATGTCGTCCCTAAAGGAA+AGG 0.605693 1_4:+8422313 Msa0148140:exon
CAATGGTTTCAAGAAGGGTG+TGG 0.606722 1_4:+8423295 Msa0148140:three_prime_UTR
GGATTTCTGCAGAAAATACC+TGG 0.607431 1_4:+8420820 Msa0148140:CDS
AACAAAGAAACAAGTGACAA+TGG 0.608931 1_4:-8418264 None:intergenic
GGAAAATTGCTCTATCTAGA+CGG 0.609264 1_4:+8422076 Msa0148140:CDS
TGGTTTCAAGAAGGGTGTGG+TGG 0.610036 1_4:+8423298 Msa0148140:three_prime_UTR
AAGCCTAAACTCACTGACAA+TGG 0.615534 1_4:+8421150 Msa0148140:CDS
CCATTATAAACACCGTCTTG+GGG 0.615981 1_4:-8419962 None:intergenic
TAAAGCGATTAGTGAATACC+AGG 0.616434 1_4:+8418676 Msa0148140:CDS
GTGTGGTGGAAGGATTGTGA+AGG 0.617280 1_4:+8423312 Msa0148140:three_prime_UTR
ACGGTGTTTATAATGGGAGG+TGG 0.620093 1_4:+8419969 Msa0148140:CDS
ATTGCAAACAAATCAAAAGG+TGG 0.622598 1_4:+8422930 Msa0148140:three_prime_UTR
TTAGTGTAGAGCTGATAGCA+AGG 0.624227 1_4:-8421105 None:intergenic
AACATCTGGTAACACCATAG+AGG 0.635135 1_4:+8423151 Msa0148140:three_prime_UTR
ACTTTGCACAGTTGATGACA+AGG 0.637400 1_4:-8420880 None:intergenic
TAGCAAGGACCATCTTCAAG+TGG 0.638054 1_4:-8421090 None:intergenic
AGCAAGGACCATCTTCAAGT+GGG 0.640286 1_4:-8421089 None:intergenic
ATGATGCTTGAATTCCAACA+AGG 0.644146 1_4:+8423219 Msa0148140:three_prime_UTR
CTTTGGATGACATAAAAGAG+AGG 0.645177 1_4:-8419146 None:intergenic
GTACACTTACGATTTGAACA+CGG 0.645888 1_4:-8422134 None:intergenic
CCATCATTTGCTGATTCATG+GGG 0.648783 1_4:+8421890 Msa0148140:CDS
ATACCTGGTTGCAAATAAGG+AGG 0.651779 1_4:+8420835 Msa0148140:CDS
GATGAATTGTGTCTAAGGCA+CGG 0.652625 1_4:+8422666 Msa0148140:three_prime_UTR
AGTTATGTGCGATATTGACA+AGG 0.654516 1_4:+8420043 Msa0148140:CDS
ATATATTGGCAGCCCCAAGA+CGG 0.656927 1_4:+8419950 Msa0148140:intron
AAGACGGTGTTTATAATGGG+AGG 0.658751 1_4:+8419966 Msa0148140:CDS
ATGCATGGTTGGATATATGA+GGG 0.672872 1_4:+8423439 Msa0148140:three_prime_UTR
AAAGAAACAAGTGACAATGG+TGG 0.679920 1_4:-8418261 None:intergenic
AATGATTTCCTCATACCATG+TGG 0.685776 1_4:-8418413 None:intergenic
ACGTTGATGATTCTTCCACA+TGG 0.698888 1_4:+8418398 Msa0148140:CDS
GGTGGGTGCAAAGTGCAATG+TGG 0.721477 1_4:-8418243 None:intergenic
TTAGTGGTTGAAGAAATGTG+TGG 0.736065 1_4:+8423469 Msa0148140:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATGAATTTTTTTCTTTT+TGG + chr1_4:8419236-8419255 Msa0148140:intron 10.0%
!!! TTTTTTCATTTTAATATACA+TGG - chr1_4:8419282-8419301 None:intergenic 10.0%
!! TTATAATACTATAAACAAAA+TGG - chr1_4:8419396-8419415 None:intergenic 10.0%
!!! CAAGTTTTTTTTTTTTTTTT+AGG + chr1_4:8420532-8420551 Msa0148140:intron 10.0%
!!! TTTTTTTAAAACAATAGTAA+TGG + chr1_4:8420568-8420587 Msa0148140:intron 10.0%
!! AACAAAATTTAGTATATGTT+TGG + chr1_4:8418793-8418812 Msa0148140:intron 15.0%
!! ATTATAAAACAAACTTACTT+TGG - chr1_4:8419166-8419185 None:intergenic 15.0%
!!! TAAGTTTGTTTTATAATATC+AGG + chr1_4:8419169-8419188 Msa0148140:intron 15.0%
!!! AAGTTTGTTTTATAATATCA+GGG + chr1_4:8419170-8419189 Msa0148140:intron 15.0%
!! AGAAAAAAAAAACTAGTAAT+TGG + chr1_4:8419640-8419659 Msa0148140:intron 15.0%
!!! AAGTCATATTCTTATTTTTT+TGG + chr1_4:8420076-8420095 Msa0148140:intron 15.0%
!!! AGTCATATTCTTATTTTTTT+GGG + chr1_4:8420077-8420096 Msa0148140:intron 15.0%
!!! TTATTAAGTTTTCAATTTGA+GGG - chr1_4:8420183-8420202 None:intergenic 15.0%
!!! ATTATTAAGTTTTCAATTTG+AGG - chr1_4:8420184-8420203 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTAGGGA+AGG + chr1_4:8420537-8420556 Msa0148140:intron 15.0%
!!! AACAAAAATATTTTGCTAAA+AGG + chr1_4:8420649-8420668 Msa0148140:intron 15.0%
!! ATAAAATAAGGAAAATACTT+AGG + chr1_4:8422533-8422552 Msa0148140:three_prime_UTR 15.0%
!!! ATTTTCAACAAATAAAACCA+TGG + chr1_4:8418300-8418319 Msa0148140:CDS 20.0%
!!! TTTTCAACAAATAAAACCAT+GGG + chr1_4:8418301-8418320 Msa0148140:CDS 20.0%
!! TAAAACAGAGGAAATTAAAA+AGG - chr1_4:8418487-8418506 None:intergenic 20.0%
!! TACTATATCATATAAAACAG+AGG - chr1_4:8418499-8418518 None:intergenic 20.0%
!!! AATCACATACTTTTTTTTAG+AGG - chr1_4:8419025-8419044 None:intergenic 20.0%
!!! AGTTTGTTTTATAATATCAG+GGG + chr1_4:8419171-8419190 Msa0148140:intron 20.0%
!! AATAAGAGAATATTACATCA+AGG - chr1_4:8419373-8419392 None:intergenic 20.0%
!! GATATAAACATTGTATACAT+AGG - chr1_4:8419558-8419577 None:intergenic 20.0%
!!! TTTTCTTTTTAAAATGACGA+TGG - chr1_4:8419626-8419645 None:intergenic 20.0%
!!! GTAATTGGATATTTTTACAA+AGG + chr1_4:8419655-8419674 Msa0148140:intron 20.0%
!! TTTACAAAGGAAAAAACTTA+TGG + chr1_4:8419668-8419687 Msa0148140:intron 20.0%
!! TTGTAAAAGGATAAAAACAT+AGG - chr1_4:8419839-8419858 None:intergenic 20.0%
!!! AGTCTATAAAAAAAGCATAA+TGG - chr1_4:8419874-8419893 None:intergenic 20.0%
!!! CTTTTTTTATAGACTTGATT+GGG + chr1_4:8419879-8419898 Msa0148140:intron 20.0%
!!! GTCATATTCTTATTTTTTTG+GGG + chr1_4:8420078-8420097 Msa0148140:intron 20.0%
!!! TCATATTCTTATTTTTTTGG+GGG + chr1_4:8420079-8420098 Msa0148140:intron 20.0%
!! TAATAATATCCATATTGATG+TGG + chr1_4:8420200-8420219 Msa0148140:intron 20.0%
!! AATAATATCCATATTGATGT+GGG + chr1_4:8420201-8420220 Msa0148140:intron 20.0%
!!! TCCTTATTTTTCTTAAACAA+GGG - chr1_4:8420233-8420252 None:intergenic 20.0%
!! ACAAATAAATTGAGACAAAA+TGG - chr1_4:8420365-8420384 None:intergenic 20.0%
!! AATAAAAAAAATATTCCTGC+AGG + chr1_4:8420790-8420809 Msa0148140:intron 20.0%
!! ATGTTAAATAGTGATTAGAT+GGG - chr1_4:8421404-8421423 None:intergenic 20.0%
!! AATGTTAAATAGTGATTAGA+TGG - chr1_4:8421405-8421424 None:intergenic 20.0%
!! CTATAAGAAAACATACAAAA+AGG - chr1_4:8421437-8421456 None:intergenic 20.0%
!!! CTTTTTGTATGTTTTCTTAT+AGG + chr1_4:8421435-8421454 Msa0148140:intron 20.0%
!! AAGTCTAATTATGTTCAATT+GGG - chr1_4:8421659-8421678 None:intergenic 20.0%
!!! AAATTCTTTAAAAATGGACA+CGG - chr1_4:8422204-8422223 None:intergenic 20.0%
!!! GATGTCAAATTCTTTAAAAA+TGG - chr1_4:8422210-8422229 None:intergenic 20.0%
!! ATCCAAATTATTATTGTTTC+AGG + chr1_4:8422227-8422246 Msa0148140:intron 20.0%
!!! TGTTTTCATTAATTTGCATA+TGG + chr1_4:8422443-8422462 Msa0148140:three_prime_UTR 20.0%
!! ATAGTTACCTAGATAAAATA+AGG + chr1_4:8422521-8422540 Msa0148140:three_prime_UTR 20.0%
!!! GTATTTTCCTTATTTTATCT+AGG - chr1_4:8422531-8422550 None:intergenic 20.0%
!!! ATGAGATTTTTAACTTTGAA+TGG - chr1_4:8422793-8422812 None:intergenic 20.0%
!!! ACCATTTATTTAAGATTGAA+CGG + chr1_4:8422829-8422848 Msa0148140:three_prime_UTR 20.0%
!!! GAACGTTTAAAATTGATTTA+GGG - chr1_4:8422870-8422889 None:intergenic 20.0%
!!! AGAACGTTTAAAATTGATTT+AGG - chr1_4:8422871-8422890 None:intergenic 20.0%
!!! AAATCAATTTTAAACGTTCT+CGG + chr1_4:8422871-8422890 Msa0148140:three_prime_UTR 20.0%
!!! TCACTTGTTTCTTTGTTTTA+TGG + chr1_4:8418270-8418289 Msa0148140:exon 25.0%
!!! CACTTGTTTCTTTGTTTTAT+GGG + chr1_4:8418271-8418290 Msa0148140:exon 25.0%
! TCATTAACGTAAAACATTTC+TGG - chr1_4:8418334-8418353 None:intergenic 25.0%
! TCGTAATTTCGATAAATCTA+CGG - chr1_4:8418824-8418843 None:intergenic 25.0%
!!! TTGTTATTTATGCTGCATAT+AGG + chr1_4:8419051-8419070 Msa0148140:intron 25.0%
!!! TGTTGCTATCAATATTTTTG+CGG - chr1_4:8419472-8419491 None:intergenic 25.0%
! TAAACCATACCACTTTATAT+TGG + chr1_4:8419531-8419550 Msa0148140:intron 25.0%
!!! AAACATAGGTGGATTTTTTT+AGG - chr1_4:8419825-8419844 None:intergenic 25.0%
! TAAAAGGATAAAAACATAGG+TGG - chr1_4:8419836-8419855 None:intergenic 25.0%
!!! GCTTTTTTTATAGACTTGAT+TGG + chr1_4:8419878-8419897 Msa0148140:intron 25.0%
!!! CCTTATTTTTCTTAAACAAG+GGG - chr1_4:8420232-8420251 None:intergenic 25.0%
!!! GTCCTTATTTTTCTTAAACA+AGG - chr1_4:8420234-8420253 None:intergenic 25.0%
! AGCAAACTTAAGTCATTTAA+GGG - chr1_4:8420472-8420491 None:intergenic 25.0%
! TAGCAAACTTAAGTCATTTA+AGG - chr1_4:8420473-8420492 None:intergenic 25.0%
!!! CATTTTTTTTTTTGTGTGTG+TGG + chr1_4:8420957-8420976 Msa0148140:intron 25.0%
!! CTTCACAATTTTGTGTTAAA+GGG + chr1_4:8421011-8421030 Msa0148140:intron 25.0%
! ATGTTAGATAGTTGTTCAAT+AGG + chr1_4:8421214-8421233 Msa0148140:intron 25.0%
! GAAGTCTAATTATGTTCAAT+TGG - chr1_4:8421660-8421679 None:intergenic 25.0%
! AATTCAGTACATGAAATTGT+GGG + chr1_4:8421753-8421772 Msa0148140:intron 25.0%
!! AATTTCTATGCTTTGAATTC+AGG + chr1_4:8421988-8422007 Msa0148140:intron 25.0%
! AGAATTGAAGCAAGAATAAA+AGG + chr1_4:8422055-8422074 Msa0148140:CDS 25.0%
! TGTACAAACCTCAAATTTAA+AGG + chr1_4:8422152-8422171 Msa0148140:intron 25.0%
! AGCCTGAAACAATAATAATT+TGG - chr1_4:8422232-8422251 None:intergenic 25.0%
! AATAATATAGCGCAATACTT+TGG - chr1_4:8422364-8422383 None:intergenic 25.0%
! ATACTTAGGTAAAGTTCTAT+AGG + chr1_4:8422547-8422566 Msa0148140:three_prime_UTR 25.0%
! ACCGTTCAATCTTAAATAAA+TGG - chr1_4:8422833-8422852 None:intergenic 25.0%
!!! TTGCAATTGTTTCTAATACA+AGG - chr1_4:8422917-8422936 None:intergenic 25.0%
! ACAATTGCAAACAAATCAAA+AGG + chr1_4:8422927-8422946 Msa0148140:three_prime_UTR 25.0%
! TTTAACTAAGTTCTCTTAAC+AGG + chr1_4:8423008-8423027 Msa0148140:three_prime_UTR 25.0%
!!! AGCAAAAAGTTTTTAAGAGA+TGG + chr1_4:8423101-8423120 Msa0148140:three_prime_UTR 25.0%
! ACCAAACCAATAATCAATAA+TGG - chr1_4:8423390-8423409 None:intergenic 25.0%
!!! GAGATTTTTTTTGATGATGT+GGG + chr1_4:8423515-8423534 Msa0148140:three_prime_UTR 25.0%
AACAAAGAAACAAGTGACAA+TGG - chr1_4:8418267-8418286 None:intergenic 30.0%
!!! TTGTTTCTTTGTTTTATGGG+AGG + chr1_4:8418274-8418293 Msa0148140:exon 30.0%
TTACGTTAATGAGTTTGCAA+AGG + chr1_4:8418342-8418361 Msa0148140:CDS 30.0%
!! TCATTGATGATGATCTCAAA+TGG + chr1_4:8418431-8418450 Msa0148140:CDS 30.0%
TTTGGATGACATAAAAGAGA+GGG - chr1_4:8419148-8419167 None:intergenic 30.0%
!! TTGTTTTATAATATCAGGGG+AGG + chr1_4:8419174-8419193 Msa0148140:intron 30.0%
TACATAGGTCCAATATAAAG+TGG - chr1_4:8419543-8419562 None:intergenic 30.0%
! ACTCTTTTATACTCTCTTGT+TGG - chr1_4:8419580-8419599 None:intergenic 30.0%
!! GCGTGCTATTAATTTGTAAA+AGG - chr1_4:8419852-8419871 None:intergenic 30.0%
GATTATGTTTGATGAAACCT+TGG + chr1_4:8419901-8419920 Msa0148140:intron 30.0%
! TAAGTTTTCAATTTGAGGGA+CGG - chr1_4:8420179-8420198 None:intergenic 30.0%
! CCCCTTGTTTAAGAAAAATA+AGG + chr1_4:8420229-8420248 Msa0148140:intron 30.0%
TTAAGTCATTTAAGGGATAC+TGG - chr1_4:8420465-8420484 None:intergenic 30.0%
TGGTAAGAATTTGTAAGACA+TGG + chr1_4:8420701-8420720 Msa0148140:intron 30.0%
AAAAAAAATATTCCTGCAGG+AGG + chr1_4:8420793-8420812 Msa0148140:intron 30.0%
AAAATACCTGGTTGCAAATA+AGG + chr1_4:8420832-8420851 Msa0148140:CDS 30.0%
! GCTTCACAATTTTGTGTTAA+AGG + chr1_4:8421010-8421029 Msa0148140:intron 30.0%
GAGAAGTTTGATATCATTGT+TGG + chr1_4:8421054-8421073 Msa0148140:CDS 30.0%
TGATATCATTGTTGGAGATT+TGG + chr1_4:8421062-8421081 Msa0148140:CDS 30.0%
TTCAAAATCGATCACTTGAT+TGG - chr1_4:8421335-8421354 None:intergenic 30.0%
AAAGCGTGGTAACAAAAATA+TGG - chr1_4:8421373-8421392 None:intergenic 30.0%
! TTGTATGTTTTCTTATAGGC+TGG + chr1_4:8421439-8421458 Msa0148140:intron 30.0%
!!! TTTTATGGTGTTGTGTATAG+AGG - chr1_4:8421500-8421519 None:intergenic 30.0%
TATACACAACACCATAAAAC+AGG + chr1_4:8421501-8421520 Msa0148140:CDS 30.0%
! ACATTTGAAGACCTGTTTTA+TGG - chr1_4:8421515-8421534 None:intergenic 30.0%
! ACCTCAAATCTTTTACTAGT+AGG + chr1_4:8421547-8421566 Msa0148140:intron 30.0%
ACCTACTAGTAAAAGATTTG+AGG - chr1_4:8421551-8421570 None:intergenic 30.0%
!! TAGTAGGTGTTTGTTATAAC+CGG + chr1_4:8421563-8421582 Msa0148140:intron 30.0%
ACACTTGTTCAAACAAAACA+TGG + chr1_4:8421718-8421737 Msa0148140:intron 30.0%
CAATTCAGTACATGAAATTG+TGG + chr1_4:8421752-8421771 Msa0148140:intron 30.0%
TATTCATGATGGTAGATGAA+TGG - chr1_4:8422111-8422130 None:intergenic 30.0%
AAATGGTTAAATTACACCAG+AGG - chr1_4:8422179-8422198 None:intergenic 30.0%
TAAAAATGGACACGGTTAAA+TGG - chr1_4:8422196-8422215 None:intergenic 30.0%
GATAATGCTAGATTTATTCC+TGG + chr1_4:8422280-8422299 Msa0148140:CDS 30.0%
! TTAGTCCAGATTTGACTTTA+AGG + chr1_4:8422382-8422401 Msa0148140:three_prime_UTR 30.0%
ATTGACCTTAAAGTCAAATC+TGG - chr1_4:8422390-8422409 None:intergenic 30.0%
! TTTTATCTAGGTAACTATGC+TGG - chr1_4:8422519-8422538 None:intergenic 30.0%
TCCAAATTGTTTCATCAACT+TGG + chr1_4:8422730-8422749 Msa0148140:three_prime_UTR 30.0%
ATTGCAAACAAATCAAAAGG+TGG + chr1_4:8422930-8422949 Msa0148140:three_prime_UTR 30.0%
GTTGTTCTTACAGCTATATT+GGG - chr1_4:8423062-8423081 Msa0148150:CDS 30.0%
TGTTGTTCTTACAGCTATAT+TGG - chr1_4:8423063-8423082 Msa0148150:CDS 30.0%
TTGAAAGACAAAACAGTGAA+GGG - chr1_4:8423200-8423219 Msa0148150:CDS 30.0%
ATTGAAAGACAAAACAGTGA+AGG - chr1_4:8423201-8423220 Msa0148150:CDS 30.0%
! CTGAAGCCATTATTGATTAT+TGG + chr1_4:8423381-8423400 Msa0148140:three_prime_UTR 30.0%
! GCCATTATTGATTATTGGTT+TGG + chr1_4:8423386-8423405 Msa0148140:three_prime_UTR 30.0%
! AGATAAGTTTTTGTGATGCA+TGG + chr1_4:8423424-8423443 Msa0148140:three_prime_UTR 30.0%
ATATGAGGGTTAGATATTAG+TGG + chr1_4:8423453-8423472 Msa0148140:three_prime_UTR 30.0%
!!! GGAGATTTTTTTTGATGATG+TGG + chr1_4:8423514-8423533 Msa0148140:three_prime_UTR 30.0%
AAGAAACAAGTGACAATGGT+GGG - chr1_4:8418263-8418282 None:intergenic 35.0%
AAAGAAACAAGTGACAATGG+TGG - chr1_4:8418264-8418283 None:intergenic 35.0%
AACAAATAAAACCATGGGAG+AGG + chr1_4:8418306-8418325 Msa0148140:CDS 35.0%
AATCATCAACGTTGTTGACA+TGG - chr1_4:8418390-8418409 None:intergenic 35.0%
AATGATTTCCTCATACCATG+TGG - chr1_4:8418416-8418435 None:intergenic 35.0%
AATGGTCCTTTAAACTCAAC+AGG + chr1_4:8418449-8418468 Msa0148140:CDS 35.0%
AACGAACCTGTTGAGTTTAA+AGG - chr1_4:8418458-8418477 None:intergenic 35.0%
TAAAGCGATTAGTGAATACC+AGG + chr1_4:8418676-8418695 Msa0148140:CDS 35.0%
CTTTGGATGACATAAAAGAG+AGG - chr1_4:8419149-8419168 None:intergenic 35.0%
AGGTCCAATATAAAGTGGTA+TGG - chr1_4:8419538-8419557 None:intergenic 35.0%
AACCTTGGACTAATATGAAG+AGG + chr1_4:8419916-8419935 Msa0148140:intron 35.0%
AGGCATGTGTGGTAATATAT+TGG + chr1_4:8419936-8419955 Msa0148140:intron 35.0%
AGTTATGTGCGATATTGACA+AGG + chr1_4:8420043-8420062 Msa0148140:CDS 35.0%
TGCTAAAAGGACAGACAAAA+TGG + chr1_4:8420662-8420681 Msa0148140:intron 35.0%
ATGGAACAGAGAGAGAATAT+TGG + chr1_4:8420681-8420700 Msa0148140:intron 35.0%
! AGCTAGCTCATTTTGCAAAT+AGG + chr1_4:8420907-8420926 Msa0148140:intron 35.0%
! TTTTGTGTGTGTGGATTTCA+TGG + chr1_4:8420966-8420985 Msa0148140:intron 35.0%
GGCTGAATTAGAGAAAAGAA+AGG + chr1_4:8421032-8421051 Msa0148140:CDS 35.0%
CTTCACAACTTTCTCATAGA+AGG - chr1_4:8421133-8421152 None:intergenic 35.0%
! TACAATCTGGAGCGAAATTT+AGG - chr1_4:8421242-8421261 None:intergenic 35.0%
TCAGAAGTTGTGATACAATC+TGG - chr1_4:8421255-8421274 None:intergenic 35.0%
TTGGAAAAAGAATACCAGTC+AGG - chr1_4:8421316-8421335 None:intergenic 35.0%
! AGGTATCTTTTCACACAAAG+AGG + chr1_4:8421468-8421487 Msa0148140:CDS 35.0%
!! AACCGGGTTGAATTTGTTAT+TGG + chr1_4:8421590-8421609 Msa0148140:intron 35.0%
AGCCAATAACAAATTCAACC+CGG - chr1_4:8421595-8421614 None:intergenic 35.0%
! ATGTTTTGCTTACGTGCTTT+TGG + chr1_4:8421805-8421824 Msa0148140:intron 35.0%
!! TACCATCATTTGCTGATTCA+TGG + chr1_4:8421888-8421907 Msa0148140:CDS 35.0%
!! ACCATCATTTGCTGATTCAT+GGG + chr1_4:8421889-8421908 Msa0148140:CDS 35.0%
CAGCATCAATCAATATTGGT+TGG - chr1_4:8422021-8422040 None:intergenic 35.0%
! ACCAATATTGATTGATGCTG+TGG + chr1_4:8422021-8422040 Msa0148140:CDS 35.0%
TCCACAGCATCAATCAATAT+TGG - chr1_4:8422025-8422044 None:intergenic 35.0%
ATTGATTGATGCTGTGGAAA+TGG + chr1_4:8422027-8422046 Msa0148140:CDS 35.0%
GGAAAATTGCTCTATCTAGA+CGG + chr1_4:8422076-8422095 Msa0148140:CDS 35.0%
GTACACTTACGATTTGAACA+CGG - chr1_4:8422137-8422156 None:intergenic 35.0%
GAGTCATTTCCTTTCCTTTA+GGG - chr1_4:8422325-8422344 None:intergenic 35.0%
AGAGTCATTTCCTTTCCTTT+AGG - chr1_4:8422326-8422345 None:intergenic 35.0%
AATATAGCGCAATACTTTGG+AGG - chr1_4:8422361-8422380 None:intergenic 35.0%
!! TGACTTTAAGGTCAATCTGT+AGG + chr1_4:8422394-8422413 Msa0148140:three_prime_UTR 35.0%
!! GACTTTAAGGTCAATCTGTA+GGG + chr1_4:8422395-8422414 Msa0148140:three_prime_UTR 35.0%
AACCTGATGAATTGTGTCTA+AGG + chr1_4:8422661-8422680 Msa0148140:three_prime_UTR 35.0%
!! GCCAAGTTGATGAAACAATT+TGG - chr1_4:8422734-8422753 None:intergenic 35.0%
CTATGTTGTCACAATCTCAA+AGG - chr1_4:8422988-8423007 None:intergenic 35.0%
TCTCTTAACAGGATCAAAGT+TGG + chr1_4:8423019-8423038 Msa0148140:three_prime_UTR 35.0%
! TTTTGCATTAACAGCCTCTA+TGG - chr1_4:8423168-8423187 Msa0148150:CDS 35.0%
ATGATGCTTGAATTCCAACA+AGG + chr1_4:8423219-8423238 Msa0148140:three_prime_UTR 35.0%
ACTTCAAAATCCAACCTTGT+TGG - chr1_4:8423236-8423255 Msa0148150:CDS 35.0%
! AAGGATTGTGAAGGTTTTTG+TGG + chr1_4:8423321-8423340 Msa0148140:three_prime_UTR 35.0%
! AGGATTGTGAAGGTTTTTGT+GGG + chr1_4:8423322-8423341 Msa0148140:three_prime_UTR 35.0%
! AAGTTTTTGTGATGCATGGT+TGG + chr1_4:8423428-8423447 Msa0148140:three_prime_UTR 35.0%
ATGCATGGTTGGATATATGA+GGG + chr1_4:8423439-8423458 Msa0148140:three_prime_UTR 35.0%
TTAGTGGTTGAAGAAATGTG+TGG + chr1_4:8423469-8423488 Msa0148140:three_prime_UTR 35.0%
GTTGAAGAAATGTGTGGAAT+TGG + chr1_4:8423475-8423494 Msa0148140:three_prime_UTR 35.0%
ATTGGATGTGAGATGGAAAA+TGG + chr1_4:8423493-8423512 Msa0148140:three_prime_UTR 35.0%
!! CATGGTTTGGTTGAACTTCA+GGG - chr1_4:8418372-8418391 None:intergenic 40.0%
!! ACATGGTTTGGTTGAACTTC+AGG - chr1_4:8418373-8418392 None:intergenic 40.0%
TCAACGTTGTTGACATGGTT+TGG - chr1_4:8418385-8418404 None:intergenic 40.0%
!! ACGTTGATGATTCTTCCACA+TGG + chr1_4:8418398-8418417 Msa0148140:CDS 40.0%
TGATTCTTCCACATGGTATG+AGG + chr1_4:8418405-8418424 Msa0148140:CDS 40.0%
!!! ATTTTGATTCGCAACGAGTG+TGG - chr1_4:8418862-8418881 None:intergenic 40.0%
!! ATATAGGCGTTGATGCTTGA+TGG + chr1_4:8419067-8419086 Msa0148140:intron 40.0%
GAGTCTGACAAAAGTAAGTG+TGG + chr1_4:8419596-8419615 Msa0148140:intron 40.0%
TGCCTCTTCATATTAGTCCA+AGG - chr1_4:8419921-8419940 None:intergenic 40.0%
! CTAATATGAAGAGGCATGTG+TGG + chr1_4:8419925-8419944 Msa0148140:intron 40.0%
CCATTATAAACACCGTCTTG+GGG - chr1_4:8419965-8419984 None:intergenic 40.0%
CCCATTATAAACACCGTCTT+GGG - chr1_4:8419966-8419985 None:intergenic 40.0%
CCCAAGACGGTGTTTATAAT+GGG + chr1_4:8419963-8419982 Msa0148140:CDS 40.0%
TCCCATTATAAACACCGTCT+TGG - chr1_4:8419967-8419986 None:intergenic 40.0%
! AAGACGGTGTTTATAATGGG+AGG + chr1_4:8419966-8419985 Msa0148140:CDS 40.0%
! TTTATAATGGGAGGTGGTGA+AGG + chr1_4:8419975-8419994 Msa0148140:CDS 40.0%
AAAAATATTCCTGCAGGAGG+TGG + chr1_4:8420796-8420815 Msa0148140:intron 40.0%
GGATTTCTGCAGAAAATACC+TGG + chr1_4:8420820-8420839 Msa0148140:CDS 40.0%
ATACCTGGTTGCAAATAAGG+AGG + chr1_4:8420835-8420854 Msa0148140:CDS 40.0%
!! ACTTTGCACAGTTGATGACA+AGG - chr1_4:8420883-8420902 None:intergenic 40.0%
TTAGTGTAGAGCTGATAGCA+AGG - chr1_4:8421108-8421127 None:intergenic 40.0%
AAGCCTAAACTCACTGACAA+TGG + chr1_4:8421150-8421169 Msa0148140:CDS 40.0%
ATGCCATTGTCAGTGAGTTT+AGG - chr1_4:8421156-8421175 None:intergenic 40.0%
TGTTCCTCAAAAGTCTACCT+GGG - chr1_4:8421187-8421206 None:intergenic 40.0%
GTCAGGAGTTACAACTCAAT+CGG - chr1_4:8421299-8421318 None:intergenic 40.0%
! ATTGAGTTGTAACTCCTGAC+TGG + chr1_4:8421299-8421318 Msa0148140:intron 40.0%
TTGTGTGAAAAGATACCTGC+TGG - chr1_4:8421466-8421485 None:intergenic 40.0%
TTGTTATAACCGGATCGAAC+CGG + chr1_4:8421573-8421592 Msa0148140:intron 40.0%
TTCGTTCCTTCTTTCCCATT+TGG + chr1_4:8421836-8421855 Msa0148140:intron 40.0%
!! CCATCATTTGCTGATTCATG+GGG + chr1_4:8421890-8421909 Msa0148140:CDS 40.0%
!! ATTTGCTGATTCATGGGGAT+GGG + chr1_4:8421895-8421914 Msa0148140:CDS 40.0%
!! GAACACGGTCTTATTCATGA+TGG - chr1_4:8422122-8422141 None:intergenic 40.0%
CCAGAGGTCCTTTAAATTTG+AGG - chr1_4:8422163-8422182 None:intergenic 40.0%
CCTCAAATTTAAAGGACCTC+TGG + chr1_4:8422160-8422179 Msa0148140:intron 40.0%
GCTAGATTTATTCCTGGTCA+TGG + chr1_4:8422286-8422305 Msa0148140:CDS 40.0%
TGCCTTAGACACAATTCATC+AGG - chr1_4:8422666-8422685 None:intergenic 40.0%
! GATGAATTGTGTCTAAGGCA+CGG + chr1_4:8422666-8422685 Msa0148140:three_prime_UTR 40.0%
! ATCAACTTGGCTTGAGTAGT+AGG + chr1_4:8422743-8422762 Msa0148140:three_prime_UTR 40.0%
TAAACGTTCTCGGCAATTGT+TGG + chr1_4:8422881-8422900 Msa0148140:three_prime_UTR 40.0%
! TTTTTGCTTAGCATTGCTGC+TGG - chr1_4:8423089-8423108 Msa0148150:CDS 40.0%
AACATCTGGTAACACCATAG+AGG + chr1_4:8423151-8423170 Msa0148140:three_prime_UTR 40.0%
TGCTTGAATTCCAACAAGGT+TGG + chr1_4:8423223-8423242 Msa0148140:three_prime_UTR 40.0%
ACTAGTGTCTTCTTTGCTTG+TGG + chr1_4:8423266-8423285 Msa0148140:three_prime_UTR 40.0%
TGTCTTCTTTGCTTGTGGAA+AGG + chr1_4:8423271-8423290 Msa0148140:three_prime_UTR 40.0%
GTCTTCTTTGCTTGTGGAAA+GGG + chr1_4:8423272-8423291 Msa0148140:three_prime_UTR 40.0%
AAAGGGCAATGGTTTCAAGA+AGG + chr1_4:8423289-8423308 Msa0148140:three_prime_UTR 40.0%
AAGGGCAATGGTTTCAAGAA+GGG + chr1_4:8423290-8423309 Msa0148140:three_prime_UTR 40.0%
! ATTGTGAAGGTTTTTGTGGG+TGG + chr1_4:8423325-8423344 Msa0148140:three_prime_UTR 40.0%
GATGCATGGTTGGATATATG+AGG + chr1_4:8423438-8423457 Msa0148140:three_prime_UTR 40.0%
ATACCAGGACATTGCTCTCT+TGG + chr1_4:8418691-8418710 Msa0148140:CDS 45.0%
TATCCAAGAGAGCAATGTCC+TGG - chr1_4:8418697-8418716 None:intergenic 45.0%
! CTCTTGGATACCAAGCGTTT+TGG + chr1_4:8418707-8418726 Msa0148140:CDS 45.0%
!!! GGATACCAAGCGTTTTGGAA+AGG + chr1_4:8418712-8418731 Msa0148140:CDS 45.0%
GCAAACCTTTCCAAAACGCT+TGG - chr1_4:8418720-8418739 None:intergenic 45.0%
ATATATTGGCAGCCCCAAGA+CGG + chr1_4:8419950-8419969 Msa0148140:intron 45.0%
CCCCAAGACGGTGTTTATAA+TGG + chr1_4:8419962-8419981 Msa0148140:CDS 45.0%
! ACGGTGTTTATAATGGGAGG+TGG + chr1_4:8419969-8419988 Msa0148140:CDS 45.0%
AGCTCTCAAGCACAAGTCAA+TGG + chr1_4:8420013-8420032 Msa0148140:CDS 45.0%
! ATGCCTCCTTATTTGCAACC+AGG - chr1_4:8420841-8420860 None:intergenic 45.0%
AGCAAGGACCATCTTCAAGT+GGG - chr1_4:8421092-8421111 None:intergenic 45.0%
TAGCAAGGACCATCTTCAAG+TGG - chr1_4:8421093-8421112 None:intergenic 45.0%
! CAATGGCATTTTTGTGACCC+AGG + chr1_4:8421167-8421186 Msa0148140:CDS 45.0%
GTGTTCCTCAAAAGTCTACC+TGG - chr1_4:8421188-8421207 None:intergenic 45.0%
TGTTATAACCGGATCGAACC+GGG + chr1_4:8421574-8421593 Msa0148140:intron 45.0%
! AAATTCAACCCGGTTCGATC+CGG - chr1_4:8421585-8421604 None:intergenic 45.0%
TCTGCACCAAATGGGAAAGA+AGG - chr1_4:8421845-8421864 None:intergenic 45.0%
!! TTTCCCATTTGGTGCAGATG+TGG + chr1_4:8421847-8421866 Msa0148140:intron 45.0%
CCCCATGAATCAGCAAATGA+TGG - chr1_4:8421893-8421912 None:intergenic 45.0%
!! CATTTGCTGATTCATGGGGA+TGG + chr1_4:8421894-8421913 Msa0148140:CDS 45.0%
!! TGATTCATGGGGATGGGTTA+TGG + chr1_4:8421901-8421920 Msa0148140:CDS 45.0%
!! GCTATATTGGGTGCTGTTGT+TGG - chr1_4:8423050-8423069 Msa0148150:CDS 45.0%
TTTGCTTGTGGAAAGGGCAA+TGG + chr1_4:8423278-8423297 Msa0148140:three_prime_UTR 45.0%
CAATGGTTTCAAGAAGGGTG+TGG + chr1_4:8423295-8423314 Msa0148140:three_prime_UTR 45.0%
! AAGGTTTTTGTGGGTGGCTT+GGG + chr1_4:8423331-8423350 Msa0148140:three_prime_UTR 45.0%
GTGTGGAATTGGATGTGAGA+TGG + chr1_4:8423486-8423505 Msa0148140:three_prime_UTR 45.0%
!!! AAGTTTTTTTTTTTTTTTTA+GGG + chr1_4:8420533-8420552 Msa0148140:intron 5.0%
!!! TTATTATTGAATTATTTTAT+GGG - chr1_4:8422705-8422724 None:intergenic 5.0%
!!! TTTATTATTGAATTATTTTA+TGG - chr1_4:8422706-8422725 None:intergenic 5.0%
TGGTGAAGGTTCAGCAGCTA+GGG + chr1_4:8419989-8420008 Msa0148140:CDS 50.0%
AATATTCCTGCAGGAGGTGG+TGG + chr1_4:8420799-8420818 Msa0148140:intron 50.0%
TTGGCTGACCCACTTGAAGA+TGG + chr1_4:8421081-8421100 Msa0148140:CDS 50.0%
! GTGACCCAGGTAGACTTTTG+AGG + chr1_4:8421180-8421199 Msa0148140:intron 50.0%
GATGGGTAGTGAGAAAAGCG+TGG - chr1_4:8421387-8421406 None:intergenic 50.0%
TTCTTATAGGCTGGACCAGC+AGG + chr1_4:8421448-8421467 Msa0148140:intron 50.0%
CCACCACATCTGCACCAAAT+GGG - chr1_4:8421853-8421872 None:intergenic 50.0%
TGCTCTATCTAGACGGTGCT+TGG + chr1_4:8422083-8422102 Msa0148140:CDS 50.0%
GCATAGCATGTCGTCCCTAA+AGG + chr1_4:8422308-8422327 Msa0148140:CDS 50.0%
GCATGTCGTCCCTAAAGGAA+AGG + chr1_4:8422313-8422332 Msa0148140:exon 50.0%
TTGCTTAGCATTGCTGCTGG+TGG - chr1_4:8423086-8423105 Msa0148150:CDS 50.0%
! TGGTTTCAAGAAGGGTGTGG+TGG + chr1_4:8423298-8423317 Msa0148140:three_prime_UTR 50.0%
! TTCAAGAAGGGTGTGGTGGA+AGG + chr1_4:8423302-8423321 Msa0148140:three_prime_UTR 50.0%
! GTGTGGTGGAAGGATTGTGA+AGG + chr1_4:8423312-8423331 Msa0148140:three_prime_UTR 50.0%
! GAAGGTTTTTGTGGGTGGCT+TGG + chr1_4:8423330-8423349 Msa0148140:three_prime_UTR 50.0%
GGTGGGTGCAAAGTGCAATG+TGG - chr1_4:8418246-8418265 None:intergenic 55.0%
!! CATTTCTGGTGCCTCTCCCA+TGG - chr1_4:8418320-8418339 None:intergenic 55.0%
CAACGAGTGTGGCACGATCA+CGG - chr1_4:8418851-8418870 None:intergenic 55.0%
GTGGTGAAGGTTCAGCAGCT+AGG + chr1_4:8419988-8420007 Msa0148140:CDS 55.0%
! GGGCACTGCCCACATCAATA+TGG - chr1_4:8420212-8420231 None:intergenic 55.0%
AGAAATCCACCACCTCCTGC+AGG - chr1_4:8420808-8420827 None:intergenic 55.0%
!! CCCATTTGGTGCAGATGTGG+TGG + chr1_4:8421850-8421869 Msa0148140:intron 55.0%
GCCACCACATCTGCACCAAA+TGG - chr1_4:8421854-8421873 None:intergenic 55.0%
CGACATGCTATGCCATGACC+AGG - chr1_4:8422301-8422320 None:intergenic 55.0%
CCAGATGTTGCTCATGCAGC+TGG - chr1_4:8423140-8423159 Msa0148150:CDS 55.0%
CCAGCTGCATGAGCAACATC+TGG + chr1_4:8423137-8423156 Msa0148140:three_prime_UTR 55.0%
! TTGTGGGTGGCTTGGGTTAG+TGG + chr1_4:8423338-8423357 Msa0148140:three_prime_UTR 55.0%
CGAGTGTGGCACGATCACGG+TGG - chr1_4:8418848-8418867 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 8418243 8423542 8418243 ID=Msa0148140;Name=Msa0148140
chr1_4 mRNA 8418243 8423542 8418243 ID=Msa0148140-mRNA-1;Parent=Msa0148140;Name=Msa0148140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=46|1|1|1|1|1|10|1215|347
chr1_4 exon 8418243 8418470 8418243 ID=Msa0148140-mRNA-1:exon:3610;Parent=Msa0148140-mRNA-1
chr1_4 exon 8418667 8418733 8418667 ID=Msa0148140-mRNA-1:exon:3611;Parent=Msa0148140-mRNA-1
chr1_4 exon 8419073 8419167 8419073 ID=Msa0148140-mRNA-1:exon:3612;Parent=Msa0148140-mRNA-1
chr1_4 exon 8419962 8420064 8419962 ID=Msa0148140-mRNA-1:exon:3613;Parent=Msa0148140-mRNA-1
chr1_4 exon 8420812 8420900 8420812 ID=Msa0148140-mRNA-1:exon:3614;Parent=Msa0148140-mRNA-1
chr1_4 exon 8421032 8421188 8421032 ID=Msa0148140-mRNA-1:exon:3615;Parent=Msa0148140-mRNA-1
chr1_4 exon 8421457 8421532 8421457 ID=Msa0148140-mRNA-1:exon:3616;Parent=Msa0148140-mRNA-1
chr1_4 exon 8421864 8421922 8421864 ID=Msa0148140-mRNA-1:exon:3617;Parent=Msa0148140-mRNA-1
chr1_4 exon 8422010 8422146 8422010 ID=Msa0148140-mRNA-1:exon:3618;Parent=Msa0148140-mRNA-1
chr1_4 exon 8422249 8423542 8422249 ID=Msa0148140-mRNA-1:exon:3619;Parent=Msa0148140-mRNA-1
chr1_4 five_prime_UTR 8418243 8418288 8418243 ID=Msa0148140-mRNA-1:five_prime_utr;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8418289 8418470 8418289 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8418667 8418733 8418667 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8419073 8419167 8419073 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8419962 8420064 8419962 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8420812 8420900 8420812 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8421032 8421188 8421032 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8421457 8421532 8421457 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8421864 8421922 8421864 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8422010 8422146 8422010 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 CDS 8422249 8422327 8422249 ID=Msa0148140-mRNA-1:cds;Parent=Msa0148140-mRNA-1
chr1_4 three_prime_UTR 8422328 8423542 8422328 ID=Msa0148140-mRNA-1:three_prime_utr;Parent=Msa0148140-mRNA-1
Gene Sequence

>Msa0148140

ATGGGAGGTGTATTTTCAACAAATAAAACCATGGGAGAGGCACCAGAAATGTTTTACGTTAATGAGTTTGCAAAGGTTGTCCCTGAAGTTCAACCAAACCATGTCAACAACGTTGATGATTCTTCCACATGGTATGAGGAAATCATTGATGATGATCTCAAATGGTCCTTTAAACTCAACAGTGTGCTTCATAAAGCGATTAGTGAATACCAGGACATTGCTCTCTTGGATACCAAGCGTTTTGGAAAGGCGTTGATGCTTGATGGAAAGATGCAGAGTTCTGAAGCAGATGAATTCATTTATCATGAATGCTTGATTCATCCCTCTCTTTTATGTCATCCAAACCCCAAGACGGTGTTTATAATGGGAGGTGGTGAAGGTTCAGCAGCTAGGGAAGCTCTCAAGCACAAGTCAATGGACAAAGTAGTTATGTGCGATATTGACAAGGAGGTGGTGGATTTCTGCAGAAAATACCTGGTTGCAAATAAGGAGGCATTTGCTGACAAGAAGCTCGACCTTGTCATCAACTGTGCAAAGGCTGAATTAGAGAAAAGAAAGGAGAAGTTTGATATCATTGTTGGAGATTTGGCTGACCCACTTGAAGATGGTCCTTGCTATCAGCTCTACACTAAGTCCTTCTATGAGAAAGTTGTGAAGCCTAAACTCACTGACAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGTATCTTTTCACACAAAGAGGTCTTCACCTCTATACACAACACCATAAAACAGGTCTTCAAATATGTGGTGGCATACTCGACTCATGTACCATCATTTGCTGATTCATGGGGATGGGTTATGGCTTCAGACCAACCAATATTGATTGATGCTGTGGAAATGGACAAAAGAATTGAAGCAAGAATAAAAGGAAAATTGCTCTATCTAGACGGTGCTTGGTTCCATTCATCTACCATCATGAATAAGACCGTGTTCAAATCGCTGAAGAATGAAACTCATGTTTACACTGAAGATAATGCTAGATTTATTCCTGGTCATGGCATAGCATGTCGTCCCTAA

Protein sequence

>Msa0148140

MGGVFSTNKTMGEAPEMFYVNEFAKVVPEVQPNHVNNVDDSSTWYEEIIDDDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALMLDGKMQSSEADEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALKHKSMDKVVMCDIDKEVVDFCRKYLVANKEAFADKKLDLVINCAKAELEKRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKVVKPKLTDNGIFVTQAGPAGIFSHKEVFTSIHNTIKQVFKYVVAYSTHVPSFADSWGWVMASDQPILIDAVEMDKRIEARIKGKLLYLDGAWFHSSTIMNKTVFKSLKNETHVYTEDNARFIPGHGIACRP*