AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1389170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389170 MtrunA17_Chr3g0091921 93.729 303 19 0 1 303 1 303 0.0 592
Msa1389170 MtrunA17_Chr4g0060931 67.492 323 79 7 1 302 1 318 6.52e-144 409
Msa1389170 MtrunA17_Chr6g0453451 52.795 322 128 9 1 303 5 321 1.49e-101 300
Msa1389170 MtrunA17_Chr7g0253011 66.667 216 63 6 1 208 1 215 5.85e-93 280
Msa1389170 MtrunA17_Chr6g0461661 64.251 207 68 5 6 207 8 213 2.52e-88 268
Msa1389170 MtrunA17_Chr6g0484441 57.021 235 89 4 16 249 5 228 3.12e-88 266
Msa1389170 MtrunA17_Chr2g0316971 64.815 216 54 3 16 209 23 238 1.00e-86 265
Msa1389170 MtrunA17_Chr7g0217721 58.159 239 78 4 2 218 5 243 1.36e-83 255
Msa1389170 MtrunA17_Chr3g0139331 70.440 159 41 2 16 172 11 165 6.18e-77 238
Msa1389170 MtrunA17_Chr1g0147421 67.273 165 47 3 11 172 22 182 8.07e-76 236
Msa1389170 MtrunA17_Chr7g0217711 73.333 150 39 1 2 150 5 154 1.16e-73 224
Msa1389170 MtrunA17_Chr2g0312321 48.945 237 90 8 1 222 1 221 1.38e-63 202
Msa1389170 MtrunA17_Chr3g0144271 66.438 146 41 3 6 143 8 153 1.20e-61 201
Msa1389170 MtrunA17_Chr4g0056541 60.127 158 54 3 16 169 7 159 1.85e-60 196
Msa1389170 MtrunA17_Chr5g0405211 48.768 203 95 4 16 213 8 206 7.39e-60 194
Msa1389170 MtrunA17_Chr4g0018391 45.378 238 105 7 16 246 7 226 7.40e-60 194
Msa1389170 MtrunA17_Chr8g0372121 56.688 157 61 3 16 169 6 158 5.87e-59 191
Msa1389170 MtrunA17_Chr4g0017921 61.688 154 51 3 16 166 8 156 6.95e-59 192
Msa1389170 MtrunA17_Chr2g0318081 55.689 167 72 1 13 179 13 177 7.03e-59 192
Msa1389170 MtrunA17_Chr8g0359921 48.058 206 96 2 13 209 11 214 1.72e-58 190
Msa1389170 MtrunA17_Chr2g0309331 56.962 158 60 3 13 166 7 160 4.09e-58 190
Msa1389170 MtrunA17_Chr5g0398971 57.595 158 60 3 16 169 7 161 5.37e-58 189
Msa1389170 MtrunA17_Chr8g0346001 53.714 175 69 4 2 166 3 175 1.00e-57 191
Msa1389170 MtrunA17_Chr7g0252971 44.444 234 113 6 13 230 5 237 1.60e-56 186
Msa1389170 MtrunA17_Chr4g0042561 55.063 158 69 1 16 171 9 166 1.79e-56 183
Msa1389170 MtrunA17_Chr1g0183741 48.663 187 80 5 16 200 10 182 2.14e-56 183
Msa1389170 MtrunA17_Chr5g0417791 55.484 155 67 1 14 166 1 155 3.35e-56 182
Msa1389170 MtrunA17_Chr2g0309891 56.051 157 66 2 14 168 4 159 4.42e-56 184
Msa1389170 MtrunA17_Chr1g0200561 55.195 154 62 3 16 166 19 168 9.76e-56 184
Msa1389170 MtrunA17_Chr7g0263931 56.962 158 64 3 13 166 8 165 2.29e-55 182
Msa1389170 MtrunA17_Chr3g0124761 50.847 177 75 3 13 178 4 179 4.71e-55 180
Msa1389170 MtrunA17_Chr7g0261411 46.890 209 99 6 16 219 10 211 1.73e-54 179
Msa1389170 MtrunA17_Chr6g0481091 55.195 154 65 2 16 167 6 157 4.65e-54 176
Msa1389170 MtrunA17_Chr2g0318101 52.469 162 66 3 16 166 15 176 5.05e-54 179
Msa1389170 MtrunA17_Chr3g0109821 56.863 153 63 2 16 166 6 157 2.44e-53 184
Msa1389170 MtrunA17_Chr3g0113001 61.972 142 50 2 65 202 14 155 3.13e-53 176
Msa1389170 MtrunA17_Chr8g0361731 50.000 168 74 3 8 166 7 173 5.52e-53 178
Msa1389170 MtrunA17_Chr5g0433781 55.556 153 64 3 16 166 6 156 1.43e-52 182
Msa1389170 MtrunA17_Chr4g0047841 50.575 174 63 4 16 166 15 188 1.43e-52 175
Msa1389170 MtrunA17_Chr7g0214071 50.000 176 79 4 7 180 6 174 3.61e-52 172
Msa1389170 MtrunA17_Chr5g0417001 50.556 180 78 5 12 181 11 189 6.94e-52 175
Msa1389170 MtrunA17_Chr8g0384721 44.495 218 101 4 16 214 7 223 8.15e-52 172
Msa1389170 MtrunA17_Chr3g0130731 48.000 175 89 2 11 184 2 175 4.38e-51 170
Msa1389170 MtrunA17_Chr2g0326361 51.875 160 73 3 16 171 14 173 1.38e-50 169
Msa1389170 MtrunA17_Chr6g0453131 46.154 195 90 4 16 198 15 206 3.26e-50 171
Msa1389170 MtrunA17_Chr3g0128151 44.762 210 104 3 16 223 22 221 5.54e-50 174
Msa1389170 MtrunA17_Chr5g0400461 46.774 186 83 4 16 192 6 184 1.20e-49 167
Msa1389170 MtrunA17_Chr4g0054791 47.541 183 86 4 16 190 6 186 6.73e-49 165
Msa1389170 MtrunA17_Chr5g0428991 53.797 158 59 3 16 166 25 175 1.09e-48 171
Msa1389170 MtrunA17_Chr3g0128111 49.689 161 77 2 19 177 45 203 1.12e-48 162
Msa1389170 MtrunA17_Chr1g0197361 44.954 218 105 8 10 219 2 212 3.44e-48 169
Msa1389170 MtrunA17_Chr3g0130101 50.932 161 73 3 15 172 6 163 4.87e-48 164
Msa1389170 MtrunA17_Chr5g0442771 36.996 273 146 8 9 261 12 278 1.01e-47 162
Msa1389170 MtrunA17_Chr1g0197351 52.795 161 70 2 16 170 42 202 6.83e-47 164
Msa1389170 MtrunA17_Chr3g0092671 53.416 161 63 5 18 172 7 161 2.22e-46 164
Msa1389170 MtrunA17_Chr2g0311651 44.444 189 85 6 1 173 9 193 3.61e-46 158
Msa1389170 MtrunA17_Chr8g0364791 48.447 161 75 3 16 172 6 162 9.98e-46 160
Msa1389170 MtrunA17_Chr4g0076731 48.701 154 72 3 15 166 53 201 6.55e-45 157
Msa1389170 MtrunA17_Chr2g0311661 40.488 205 99 6 1 190 9 205 1.02e-44 153
Msa1389170 MtrunA17_Chr1g0201021 46.821 173 87 3 2 172 6 175 5.14e-44 157
Msa1389170 MtrunA17_Chr8g0384201 47.170 159 80 2 16 172 6 162 6.16e-44 156
Msa1389170 MtrunA17_Chr3g0113031 60.305 131 47 3 77 202 1 131 1.21e-43 150
Msa1389170 MtrunA17_Chr4g0038751 45.977 174 80 5 1 171 4 166 2.26e-43 150
Msa1389170 MtrunA17_Chr8g0385991 43.125 160 84 3 16 170 14 171 9.57e-38 133
Msa1389170 MtrunA17_Chr8g0345671 56.923 130 48 6 16 139 11 138 1.29e-37 137
Msa1389170 MtrunA17_Chr3g0131911 42.593 162 83 4 16 169 14 173 1.04e-36 131
Msa1389170 MtrunA17_Chr4g0026141 42.500 160 79 5 15 164 4 160 1.98e-34 125
Msa1389170 MtrunA17_Chr8g0345691 47.742 155 66 8 16 164 12 157 2.31e-34 129
Msa1389170 MtrunA17_Chr2g0321741 40.123 162 77 4 36 196 12 154 3.33e-33 125
Msa1389170 MtrunA17_Chr2g0321631 38.462 156 88 4 17 164 5 160 7.02e-32 119
Msa1389170 MtrunA17_Chr8g0345711 47.287 129 62 5 16 139 12 139 5.82e-31 114
Msa1389170 MtrunA17_Chr7g0266701 39.877 163 86 6 16 167 4 165 4.52e-30 114
Msa1389170 MtrunA17_Chr8g0345701 46.154 143 55 7 16 139 7 146 4.69e-29 109
Msa1389170 MtrunA17_Chr4g0050701 37.342 158 85 3 16 167 11 160 5.08e-29 109
Msa1389170 MtrunA17_Chr8g0345731 45.038 131 65 5 16 139 24 154 3.91e-28 107
Msa1389170 MtrunA17_Chr8g0345721 37.158 183 68 9 2 139 11 191 2.51e-25 100
Msa1389170 MtrunA17_Chr8g0384351 37.647 170 80 6 11 176 5 152 4.83e-25 99.0
Msa1389170 MtrunA17_Chr8g0345741 43.333 120 60 6 27 140 2 119 2.05e-22 91.3
Msa1389170 MtrunA17_Chr7g0243371 49.398 83 38 2 63 141 9 91 3.09e-22 89.7
Msa1389170 MtrunA17_Chr3g0130321 35.000 180 96 7 12 176 3 176 7.80e-21 88.6
Msa1389170 MtrunA17_Chr3g0113011 63.934 61 22 0 2 62 5 65 4.36e-20 82.4
Msa1389170 MtrunA17_Chr3g0113041 60.656 61 24 0 2 62 5 65 3.42e-18 77.4
Msa1389170 MtrunA17_Chr7g0251661 32.283 127 80 5 16 139 10 133 1.10e-16 75.9
Msa1389170 MtrunA17_Chr7g0251651 33.333 132 82 5 11 139 13 141 2.77e-16 75.9
Msa1389170 MtrunA17_Chr4g0040541 34.965 143 75 4 16 141 48 189 1.15e-14 72.8
Msa1389170 MtrunA17_Chr7g0251671 28.571 147 95 5 16 157 10 151 1.56e-13 67.4
Msa1389170 MtrunA17_Chr8g0389661 33.766 154 76 5 12 141 43 194 8.56e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389170 AT5G61430.1 57.864 337 107 6 1 303 1 336 1.07e-126 365
Msa1389170 AT5G07680.1 55.425 341 102 9 1 303 1 329 1.30e-116 339
Msa1389170 AT5G07680.2 55.657 327 96 8 14 303 1 315 4.07e-113 330
Msa1389170 AT5G39610.1 61.885 244 83 2 7 243 11 251 1.65e-100 296
Msa1389170 AT3G29035.1 70.149 201 46 1 2 202 10 196 1.32e-93 280
Msa1389170 AT5G18270.2 57.600 250 90 4 11 244 16 265 1.00e-89 271
Msa1389170 AT5G61430.2 54.212 273 90 6 65 303 2 273 2.48e-89 268
Msa1389170 AT5G18270.1 57.200 250 91 4 11 244 16 265 4.95e-89 269
Msa1389170 AT3G04060.1 65.686 204 63 4 2 198 4 207 1.02e-88 268
Msa1389170 AT3G15170.1 60.000 225 78 4 11 230 15 232 8.69e-87 263
Msa1389170 AT5G53950.1 76.582 158 35 1 12 167 13 170 6.85e-85 260
Msa1389170 AT3G18400.1 75.316 158 36 2 16 173 5 159 6.54e-83 253
Msa1389170 AT2G24430.2 68.675 166 45 4 9 172 11 171 1.93e-75 234
Msa1389170 AT2G24430.1 68.675 166 45 4 9 172 11 171 1.93e-75 234
Msa1389170 AT1G76420.1 66.250 160 49 2 9 166 15 171 1.71e-69 219
Msa1389170 AT3G12977.1 48.095 210 99 3 16 224 18 218 7.01e-67 211
Msa1389170 AT1G56010.2 49.107 224 92 8 16 224 19 235 4.60e-63 202
Msa1389170 AT1G12260.2 59.494 158 57 3 16 170 7 160 3.10e-60 196
Msa1389170 AT1G12260.1 59.494 158 57 3 16 170 7 160 4.87e-60 196
Msa1389170 AT1G62700.1 60.127 158 56 3 16 170 7 160 2.80e-59 194
Msa1389170 AT1G62700.2 60.127 158 56 3 16 170 7 160 2.80e-59 194
Msa1389170 AT2G18060.3 56.604 159 62 3 16 171 9 163 4.20e-59 193
Msa1389170 AT2G18060.1 56.604 159 62 3 16 171 9 163 4.20e-59 193
Msa1389170 AT1G71930.2 51.534 163 72 2 13 172 6 164 2.24e-58 190
Msa1389170 AT1G71930.1 51.534 163 72 2 13 172 6 164 2.24e-58 190
Msa1389170 AT4G10350.1 59.236 157 58 3 16 168 9 163 2.43e-58 191
Msa1389170 AT4G36160.1 55.030 169 63 4 1 166 1 159 7.86e-58 190
Msa1389170 AT4G36160.3 55.030 169 63 4 1 166 1 159 7.86e-58 190
Msa1389170 AT4G36160.2 55.030 169 63 4 1 166 5 163 8.70e-58 190
Msa1389170 AT5G62380.2 54.857 175 72 4 16 187 7 177 1.08e-57 189
Msa1389170 AT5G62380.1 54.857 175 72 4 16 187 7 177 1.08e-57 189
Msa1389170 AT4G27410.2 52.941 170 75 2 8 174 3 170 1.86e-57 187
Msa1389170 AT2G46770.1 54.167 168 63 3 13 166 13 180 1.90e-57 189
Msa1389170 AT3G04070.2 44.490 245 110 8 16 242 10 246 2.87e-57 188
Msa1389170 AT1G33280.1 57.143 154 58 2 16 166 8 156 6.83e-57 186
Msa1389170 AT3G61910.1 44.889 225 104 5 13 217 8 232 1.31e-56 186
Msa1389170 AT3G15500.1 54.491 167 74 2 13 179 11 175 1.65e-56 185
Msa1389170 AT1G61110.1 51.705 176 74 3 16 180 16 191 3.04e-56 184
Msa1389170 AT5G66300.1 56.329 158 61 4 16 169 12 165 3.05e-56 184
Msa1389170 AT3G17730.1 55.844 154 64 2 16 167 6 157 3.52e-56 182
Msa1389170 AT3G10500.1 56.522 161 62 3 16 172 9 165 1.53e-55 189
Msa1389170 AT1G52890.1 52.273 176 79 3 13 186 11 183 1.71e-55 182
Msa1389170 AT5G04410.1 56.875 160 63 3 16 172 9 165 1.92e-55 189
Msa1389170 AT4G35580.1 47.980 198 92 4 16 206 9 202 3.99e-55 187
Msa1389170 AT4G35580.3 47.980 198 92 4 16 206 9 202 4.50e-55 187
Msa1389170 AT4G35580.2 47.980 198 92 4 16 206 9 202 4.94e-55 187
Msa1389170 AT1G32770.1 54.545 165 64 3 13 166 13 177 8.82e-55 182
Msa1389170 AT3G04070.1 41.762 261 110 8 16 242 10 262 1.16e-54 182
Msa1389170 AT1G69490.1 54.658 161 71 1 13 171 6 166 1.63e-54 178
Msa1389170 AT1G54330.1 58.599 157 58 2 14 168 4 155 3.53e-54 179
Msa1389170 AT1G33060.1 56.209 153 63 2 16 166 24 174 4.76e-54 186
Msa1389170 AT1G79580.3 55.696 158 61 3 13 166 14 166 4.78e-54 180
Msa1389170 AT1G79580.5 55.696 158 61 3 13 166 14 166 4.78e-54 180
Msa1389170 AT1G79580.4 55.696 158 61 3 13 166 14 166 4.78e-54 180
Msa1389170 AT1G79580.2 55.696 158 61 3 13 166 14 166 4.78e-54 180
Msa1389170 AT1G79580.1 55.696 158 61 3 13 166 14 166 4.78e-54 180
Msa1389170 AT1G33060.2 56.209 153 63 2 16 166 24 174 4.92e-54 186
Msa1389170 AT1G01720.1 55.484 155 66 3 14 166 5 158 1.57e-53 176
Msa1389170 AT5G46590.1 56.129 155 64 3 16 167 6 159 2.03e-53 176
Msa1389170 AT3G03200.1 55.769 156 60 3 16 166 6 157 2.28e-53 181
Msa1389170 AT3G10490.1 56.051 157 66 2 16 170 27 182 2.64e-53 174
Msa1389170 AT3G10480.1 57.325 157 64 2 16 170 27 182 3.28e-53 180
Msa1389170 AT4G27410.3 51.462 171 64 2 13 166 11 179 7.73e-53 176
Msa1389170 AT3G10480.2 57.962 157 62 2 16 170 27 181 1.32e-52 179
Msa1389170 AT1G65910.1 53.459 159 70 2 16 172 6 162 2.29e-52 181
Msa1389170 AT5G17260.1 54.487 156 62 3 16 166 6 157 4.49e-52 178
Msa1389170 AT5G46590.2 62.016 129 46 2 16 141 6 134 4.65e-52 172
Msa1389170 AT4G28530.1 51.479 169 58 4 16 166 10 172 5.16e-52 174
Msa1389170 AT3G10490.2 56.051 157 66 2 16 170 27 182 5.60e-52 177
Msa1389170 AT5G08790.1 50.888 169 67 3 13 172 4 165 6.50e-52 172
Msa1389170 AT2G33480.2 53.216 171 68 4 1 169 1 161 8.03e-52 171
Msa1389170 AT1G26870.1 45.283 212 95 5 9 211 11 210 1.46e-51 175
Msa1389170 AT1G77450.1 52.174 161 75 2 7 166 1 160 1.52e-51 170
Msa1389170 AT5G13180.1 50.000 174 77 4 1 172 1 166 2.13e-51 170
Msa1389170 AT2G33480.1 52.632 171 71 4 1 169 1 163 5.81e-51 169
Msa1389170 AT2G43000.1 47.239 163 84 2 9 171 12 172 6.23e-50 167
Msa1389170 AT3G15510.1 52.830 159 64 4 20 167 21 179 7.89e-50 169
Msa1389170 AT5G24590.2 43.103 232 116 6 16 243 13 232 9.56e-50 171
Msa1389170 AT5G63790.1 50.299 167 79 2 9 172 43 208 1.37e-49 167
Msa1389170 AT5G63790.2 51.553 161 74 2 9 166 53 212 1.43e-49 167
Msa1389170 AT4G17980.1 47.090 189 96 2 16 200 6 194 1.95e-49 165
Msa1389170 AT4G17980.2 47.090 189 96 2 16 200 6 194 2.40e-49 166
Msa1389170 AT5G39820.1 48.295 176 69 4 12 166 17 191 9.07e-49 166
Msa1389170 AT3G49530.2 52.258 155 67 4 16 166 13 164 1.35e-48 167
Msa1389170 AT3G49530.1 52.258 155 67 4 16 166 13 164 4.83e-48 167
Msa1389170 AT3G10480.3 47.368 190 64 2 16 170 27 215 1.97e-47 166
Msa1389170 AT5G64060.1 47.500 160 78 3 16 172 6 162 6.92e-47 161
Msa1389170 AT2G02450.1 50.327 153 71 2 15 166 50 198 7.33e-47 162
Msa1389170 AT2G02450.2 50.327 153 71 2 15 166 50 198 7.74e-47 162
Msa1389170 AT3G12977.2 47.205 161 75 3 65 224 14 165 1.04e-46 157
Msa1389170 AT2G27300.1 49.669 151 66 3 16 165 14 155 3.87e-46 159
Msa1389170 AT5G09330.5 47.500 160 78 3 16 172 6 162 1.02e-45 161
Msa1389170 AT5G09330.2 47.500 160 78 3 16 172 6 162 1.02e-45 161
Msa1389170 AT5G09330.4 47.500 160 78 3 16 172 6 162 1.02e-45 161
Msa1389170 AT5G09330.3 47.500 160 78 3 16 172 6 162 1.02e-45 161
Msa1389170 AT5G09330.1 47.500 160 78 3 16 172 6 162 1.02e-45 161
Msa1389170 AT1G52880.1 51.250 160 68 3 20 169 21 180 2.07e-45 156
Msa1389170 AT1G56010.1 49.425 174 67 7 65 224 2 168 3.15e-44 151
Msa1389170 AT2G17040.1 47.134 157 73 3 18 171 8 157 7.74e-44 151
Msa1389170 AT1G32510.1 47.059 170 78 4 15 174 5 172 1.24e-43 150
Msa1389170 AT1G34180.3 47.134 157 79 2 18 172 18 172 3.67e-43 154
Msa1389170 AT1G34190.1 46.497 157 80 2 18 172 18 172 9.39e-43 154
Msa1389170 AT1G34180.1 47.134 157 79 2 18 172 18 172 1.58e-42 154
Msa1389170 AT5G22290.1 46.939 147 69 2 18 163 23 161 1.67e-42 149
Msa1389170 AT3G12910.1 43.889 180 84 6 8 172 14 191 3.24e-42 147
Msa1389170 AT3G44290.2 48.980 147 65 3 18 163 16 153 1.07e-41 144
Msa1389170 AT1G34180.4 44.379 169 78 3 18 172 18 184 2.01e-41 149
Msa1389170 AT3G44290.1 51.969 127 60 1 18 143 16 142 4.27e-41 145
Msa1389170 AT1G32870.1 49.686 159 76 2 16 172 10 166 4.64e-41 149
Msa1389170 AT1G32870.2 49.686 159 76 2 16 172 10 166 5.31e-41 149
Msa1389170 AT1G34180.2 44.379 169 78 3 18 172 18 184 6.85e-41 149
Msa1389170 AT1G32870.3 49.686 159 76 2 16 172 46 202 1.07e-40 149
Msa1389170 AT5G04395.1 50.000 142 55 2 16 141 28 169 1.41e-38 135
Msa1389170 AT4G10350.2 57.143 112 42 3 61 168 7 116 4.02e-35 129
Msa1389170 AT4G28530.2 47.656 128 49 2 16 125 10 137 3.07e-31 119
Msa1389170 AT2G33480.3 55.340 103 40 2 69 169 8 106 1.50e-30 114
Msa1389170 AT3G04420.2 40.260 154 81 4 17 166 4 150 9.24e-30 114
Msa1389170 AT3G04420.1 40.260 154 81 4 17 166 4 150 3.75e-29 114
Msa1389170 AT4G01550.1 41.139 158 80 6 19 170 7 157 1.40e-27 111
Msa1389170 AT1G02230.1 41.727 139 71 4 14 145 1 136 3.75e-27 109
Msa1389170 AT3G44350.2 37.037 162 95 4 16 171 5 165 4.42e-27 106
Msa1389170 AT5G64530.1 36.416 173 84 4 14 172 1 161 4.64e-27 104
Msa1389170 AT5G22380.1 36.364 154 89 5 19 164 8 160 6.27e-26 103
Msa1389170 AT5G64530.2 40.769 130 63 3 14 141 1 118 2.85e-25 99.4
Msa1389170 AT1G02220.1 34.375 192 111 6 14 200 1 182 3.53e-25 104
Msa1389170 AT1G02250.1 30.508 295 180 10 14 300 1 278 5.51e-25 103
Msa1389170 AT2G18060.2 58.974 78 28 2 94 171 2 75 1.71e-24 100
Msa1389170 AT3G44350.1 38.356 146 80 4 16 153 5 148 2.56e-24 97.1
Msa1389170 AT4G01520.1 38.961 154 80 7 17 163 5 151 8.88e-24 99.0
Msa1389170 AT4G01540.4 39.474 152 78 7 19 163 7 151 3.43e-23 98.6
Msa1389170 AT4G01540.3 39.474 152 78 7 19 163 7 151 4.24e-23 99.0
Msa1389170 AT3G10490.4 57.317 82 34 1 89 170 2 82 4.76e-23 97.8
Msa1389170 AT3G10490.3 57.317 82 34 1 89 170 2 82 4.76e-23 97.8
Msa1389170 AT4G01540.2 38.816 152 79 7 19 163 7 151 5.45e-23 98.6
Msa1389170 AT4G01540.1 39.474 152 78 7 19 163 7 151 5.82e-23 99.0
Msa1389170 AT1G01010.1 37.725 167 75 7 11 163 2 153 8.19e-23 98.2
Msa1389170 AT2G43000.2 43.158 95 53 1 77 171 1 94 1.97e-21 90.1
Msa1389170 AT3G56530.1 32.258 155 98 3 13 164 49 199 8.06e-20 88.2
Msa1389170 AT5G14000.2 37.879 132 78 2 14 143 13 142 4.57e-19 82.8
Msa1389170 AT5G14000.1 35.976 164 91 5 14 172 13 167 1.62e-18 82.4
Msa1389170 AT5G50820.1 31.579 190 106 7 14 191 15 192 2.77e-16 76.3
Msa1389170 AT3G55210.1 31.707 164 92 5 15 164 10 167 5.95e-16 77.0
Msa1389170 AT5G22290.2 45.070 71 31 1 95 165 2 64 1.21e-15 75.5
Msa1389170 AT3G04430.1 31.298 131 78 3 22 140 6 136 1.02e-12 66.2
Msa1389170 AT5G14490.1 33.544 158 82 6 16 152 58 213 2.43e-12 67.0
Msa1389170 AT5G14490.4 33.544 158 82 6 16 152 55 210 2.56e-12 67.0
Msa1389170 AT4G29230.3 32.911 158 79 5 9 141 41 196 3.06e-12 67.0
Msa1389170 AT5G14490.3 33.544 158 82 6 16 152 58 213 3.38e-12 66.6
Msa1389170 AT5G14490.2 32.484 157 85 5 16 152 55 210 3.48e-12 65.9
Msa1389170 AT4G29230.1 32.911 158 79 5 9 141 41 196 3.90e-12 67.0
Msa1389170 AT4G29230.2 32.903 155 77 5 12 141 43 195 1.36e-11 65.5

Find 58 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACTTGGTTTCTTTCAAT+TGG 0.256365 tig0021219:-7487 Msa1389170:intergenic
TTCAAAAGGGGTGTTGTTAA+AGG 0.259485 tig0021219:-7521 Msa1389170:intergenic
GGTTATAGGTAAAGCCAAAA+TGG 0.262710 tig0021219:+6568 Msa1389170:intron
CTAAAGGAGAGAAAAGTAAT+TGG 0.275422 tig0021219:+6768 Msa1389170:CDS
TAGTCATTACCTTTACAAAA+AGG 0.312749 tig0021219:+6252 Msa1389170:CDS
ATAATGAGGTTAGAATCTTT+TGG 0.317375 tig0021219:+7367 Msa1389170:CDS
CAATTGATCTATCTACCTTA+TGG 0.334456 tig0021219:+7716 Msa1389170:CDS
AGATTGAGTGGGTGATTTGC+AGG 0.374745 tig0021219:+7299 Msa1389170:intron
GTATTCAAGAAGAATTTATC+AGG 0.375173 tig0021219:+7322 Msa1389170:CDS
GAGCTACTGAGGCTGGATAC+TGG 0.379620 tig0021219:+6657 Msa1389170:CDS
TTGGTTTCTTTCAATTGGAT+TGG 0.390371 tig0021219:-7482 Msa1389170:intergenic
TGATTTGAAGGAACTTCAAA+AGG 0.409160 tig0021219:-7535 Msa1389170:intergenic
TTTGAACAAATCTGAGCCTT+GGG 0.414691 tig0021219:+6318 Msa1389170:CDS
CATAAGGTAGATAGATCAAT+TGG 0.429936 tig0021219:-7715 Msa1389170:intergenic
TACAGAGGAAAATCTCTTGT+TGG 0.430359 tig0021219:+6707 Msa1389170:CDS
TTCAATTGGATTGGAGAAGC+AGG 0.441289 tig0021219:-7473 Msa1389170:intergenic
GTTATAGGTAAAGCCAAAAT+GGG 0.446731 tig0021219:+6569 Msa1389170:intron
GTGCAGTTGAAGCAGGTTGA+TGG 0.452689 tig0021219:-7693 Msa1389170:intergenic
GCTGGATACTGGAAGGCAAC+AGG 0.459474 tig0021219:+6668 Msa1389170:CDS
CTAATAAGCTCTTCATCAGT+TGG 0.462975 tig0021219:-6232 Msa1389170:intergenic
AGATTCATTGAATGATTTGA+AGG 0.469156 tig0021219:-7547 Msa1389170:intergenic
TAAAGGAGAGAAAAGTAATT+GGG 0.477512 tig0021219:+6769 Msa1389170:CDS
TGCTAGGGCCATTGGAGAAG+TGG 0.480465 tig0021219:+6294 Msa1389170:CDS
TTGAATTCAGTAATTCCATA+AGG 0.481231 tig0021219:-7731 Msa1389170:intergenic
ATTTGAACAAATCTGAGCCT+TGG 0.481500 tig0021219:+6317 Msa1389170:CDS
TCAATTGGTGCAGTTGAAGC+AGG 0.484138 tig0021219:-7700 Msa1389170:intergenic
AAAAGTACCCAACTGGTTTG+AGG 0.488534 tig0021219:+6627 Msa1389170:CDS
TCAACAAATTTGCCATTACC+TGG 0.493752 tig0021219:+7631 Msa1389170:CDS
CCTGGTTCTGTCTATAACAA+TGG 0.502369 tig0021219:+7649 Msa1389170:CDS
ACTAATAGAGCTACTGAGGC+TGG 0.503438 tig0021219:+6650 Msa1389170:CDS
ATGCATGAATATAGACTTGA+GGG 0.513338 tig0021219:+6794 Msa1389170:CDS
AGGAATCAAAGGTTCCAACT+TGG 0.513759 tig0021219:-7501 Msa1389170:intergenic
GGTAATGGCAAATTTGTTGA+GGG 0.518830 tig0021219:-7628 Msa1389170:intergenic
CTATTAGTCCTCAAACCAGT+TGG 0.520776 tig0021219:-6635 Msa1389170:intergenic
GTTCAAATCCACTTCTCCAA+TGG 0.523031 tig0021219:-6302 Msa1389170:intergenic
GATTTGAAGGAACTTCAAAA+GGG 0.527496 tig0021219:-7534 Msa1389170:intergenic
GGTGTTGTTAAAGGAATCAA+AGG 0.531027 tig0021219:-7512 Msa1389170:intergenic
TATTAGTCCTCAAACCAGTT+GGG 0.531607 tig0021219:-6634 Msa1389170:intergenic
CATGTCATTCTGGGATAATG+AGG 0.543430 tig0021219:+7353 Msa1389170:CDS
TACAAAGGAAGAGCACCTAA+AGG 0.552423 tig0021219:+6752 Msa1389170:CDS
TTATAGACAGAACCAGGTAA+TGG 0.560214 tig0021219:-7643 Msa1389170:intergenic
AGGTAATGGCAAATTTGTTG+AGG 0.565495 tig0021219:-7629 Msa1389170:intergenic
CCAATTGAAAGAAACCAAGT+TGG 0.570767 tig0021219:+7487 Msa1389170:CDS
CCATTGTTATAGACAGAACC+AGG 0.571803 tig0021219:-7649 Msa1389170:intergenic
AAAGATAAGGAGATTTACAG+AGG 0.580242 tig0021219:+6692 Msa1389170:CDS
GGTGATGAATCTGTGAGTGG+TGG 0.583550 tig0021219:-7415 Msa1389170:intergenic
GAAGGCAACAGGAAAAGATA+AGG 0.584216 tig0021219:+6679 Msa1389170:CDS
TTGGAGAAGCAGGACACGTA+AGG 0.590495 tig0021219:-7463 Msa1389170:intergenic
GATTGAGTGGGTGATTTGCA+GGG 0.595659 tig0021219:+7300 Msa1389170:intron
AACTTACATGGCAAATCCCA+AGG 0.595710 tig0021219:-6334 Msa1389170:intergenic
CAACCTCCCTAAAACTGCCA+AGG 0.602916 tig0021219:+6832 Msa1389170:CDS
AATGCATGAATATAGACTTG+AGG 0.610990 tig0021219:+6793 Msa1389170:CDS
TACTGAGGCTGGATACTGGA+AGG 0.614504 tig0021219:+6661 Msa1389170:CDS
ATTTGAAGGAACTTCAAAAG+GGG 0.629715 tig0021219:-7533 Msa1389170:intergenic
GTTGGATGAAACCTAAACCC+TGG 0.635628 tig0021219:-6214 Msa1389170:intergenic
GAGGACTAATAGAGCTACTG+AGG 0.646589 tig0021219:+6646 Msa1389170:CDS
TAAGGTGATGAATCTGTGAG+TGG 0.710371 tig0021219:-7418 None:intergenic
GGATGAAACCTAAACCCTGG+AGG 0.741977 tig0021219:-6211 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTACTTTTATGATTAATT+TGG + tig0021219:6547-6566 Msa1389170:intron 15.0%
!!! TTTATGATTAATTTGGTTAT+AGG + tig0021219:6554-6573 Msa1389170:intron 15.0%
!!! TGTTACTTTTATGATTAATT+TGG + tig0021219:6547-6566 Msa1389170:intron 15.0%
!!! TTTATGATTAATTTGGTTAT+AGG + tig0021219:6554-6573 Msa1389170:intron 15.0%
!!! AATCATTTACCTTTTTGTAA+AGG - tig0021219:6264-6283 Msa1389170:intergenic 20.0%
!! GTAAATGATAGGTTTATATT+AGG + tig0021219:6462-6481 Msa1389170:intron 20.0%
!!! AAAAAATAGGTATACACTTT+TGG - tig0021219:6871-6890 Msa1389170:intergenic 20.0%
!!! AAGTGTATACCTATTTTTTT+CGG + tig0021219:6872-6891 Msa1389170:intron 20.0%
!!! TATTTAAAGCCGAAAAAAAT+AGG - tig0021219:6884-6903 Msa1389170:intergenic 20.0%
!!! TTTTTTTCGGCTTTAAATAA+AGG + tig0021219:6885-6904 Msa1389170:intron 20.0%
!!! AATCATTTACCTTTTTGTAA+AGG - tig0021219:6264-6283 Msa1389170:intergenic 20.0%
!! GTAAATGATAGGTTTATATT+AGG + tig0021219:6462-6481 Msa1389170:intron 20.0%
!!! AAAAAATAGGTATACACTTT+TGG - tig0021219:6871-6890 Msa1389170:intergenic 20.0%
!!! AAGTGTATACCTATTTTTTT+CGG + tig0021219:6872-6891 Msa1389170:intron 20.0%
!!! TATTTAAAGCCGAAAAAAAT+AGG - tig0021219:6884-6903 Msa1389170:intergenic 20.0%
!!! TTTTTTTCGGCTTTAAATAA+AGG + tig0021219:6885-6904 Msa1389170:intron 20.0%
!!! AAATGTTTCAGTTTTGTGTA+AGG + tig0021219:6168-6187 Msa1389170:CDS 25.0%
! TAGTCATTACCTTTACAAAA+AGG + tig0021219:6252-6271 Msa1389170:CDS 25.0%
! CAAAGATCAAAAACAAAAGT+AGG - tig0021219:6369-6388 Msa1389170:intergenic 25.0%
!!! AAAACTCTTGTTTTCTACAA+AGG + tig0021219:6737-6756 Msa1389170:CDS 25.0%
! TAAAGGAGAGAAAAGTAATT+GGG + tig0021219:6769-6788 Msa1389170:CDS 25.0%
!!! TTTTAAAAGAGGTCTTAGTA+AGG - tig0021219:7011-7030 Msa1389170:intergenic 25.0%
!!! AAGACCTCTTTTAAAAATGT+TGG + tig0021219:7015-7034 Msa1389170:intron 25.0%
!!! ACAACCAACATTTTTAAAAG+AGG - tig0021219:7022-7041 Msa1389170:intergenic 25.0%
! GTATTCAAGAAGAATTTATC+AGG + tig0021219:7322-7341 Msa1389170:CDS 25.0%
!! ATAATGAGGTTAGAATCTTT+TGG + tig0021219:7367-7386 Msa1389170:CDS 25.0%
!! TTGATTTTGTCAATGGAATA+AGG - tig0021219:7439-7458 Msa1389170:intergenic 25.0%
! AGATTCATTGAATGATTTGA+AGG - tig0021219:7550-7569 Msa1389170:intergenic 25.0%
!!! CCAATAGAAAGTGTATTTTT+TGG - tig0021219:7574-7593 Msa1389170:intergenic 25.0%
! CCAAAAAATACACTTTCTAT+TGG + tig0021219:7571-7590 Msa1389170:CDS 25.0%
!!! AAATGTTTCAGTTTTGTGTA+AGG + tig0021219:6168-6187 Msa1389170:CDS 25.0%
! TAGTCATTACCTTTACAAAA+AGG + tig0021219:6252-6271 Msa1389170:CDS 25.0%
! CAAAGATCAAAAACAAAAGT+AGG - tig0021219:6369-6388 Msa1389170:intergenic 25.0%
!!! AAAACTCTTGTTTTCTACAA+AGG + tig0021219:6737-6756 Msa1389170:CDS 25.0%
! TAAAGGAGAGAAAAGTAATT+GGG + tig0021219:6769-6788 Msa1389170:CDS 25.0%
!!! TTTTAAAAGAGGTCTTAGTA+AGG - tig0021219:7011-7030 Msa1389170:intergenic 25.0%
!!! AAGACCTCTTTTAAAAATGT+TGG + tig0021219:7015-7034 Msa1389170:intron 25.0%
!!! ACAACCAACATTTTTAAAAG+AGG - tig0021219:7022-7041 Msa1389170:intergenic 25.0%
! GTATTCAAGAAGAATTTATC+AGG + tig0021219:7322-7341 Msa1389170:CDS 25.0%
!! ATAATGAGGTTAGAATCTTT+TGG + tig0021219:7367-7386 Msa1389170:CDS 25.0%
!! TTGATTTTGTCAATGGAATA+AGG - tig0021219:7439-7458 Msa1389170:intergenic 25.0%
! AGATTCATTGAATGATTTGA+AGG - tig0021219:7550-7569 Msa1389170:intergenic 25.0%
!!! CCAATAGAAAGTGTATTTTT+TGG - tig0021219:7574-7593 Msa1389170:intergenic 25.0%
! CCAAAAAATACACTTTCTAT+TGG + tig0021219:7571-7590 Msa1389170:CDS 25.0%
! ATGATTCAAACTTTTCTGCT+AGG + tig0021219:6278-6297 Msa1389170:CDS 30.0%
! TGATTCAAACTTTTCTGCTA+GGG + tig0021219:6279-6298 Msa1389170:CDS 30.0%
AGGACTCATTATAACTTACA+TGG - tig0021219:6349-6368 Msa1389170:intergenic 30.0%
TAATTCATATGCACGTAGAT+CGG + tig0021219:6392-6411 Msa1389170:intron 30.0%
TTTCATCGCATGTAAATGAT+AGG + tig0021219:6451-6470 Msa1389170:intron 30.0%
GTTATAGGTAAAGCCAAAAT+GGG + tig0021219:6569-6588 Msa1389170:intron 30.0%
AAAGATAAGGAGATTTACAG+AGG + tig0021219:6692-6711 Msa1389170:CDS 30.0%
!! CAATTACTTTTCTCTCCTTT+AGG - tig0021219:6770-6789 Msa1389170:intergenic 30.0%
CTAAAGGAGAGAAAAGTAAT+TGG + tig0021219:6768-6787 Msa1389170:CDS 30.0%
AATGCATGAATATAGACTTG+AGG + tig0021219:6793-6812 Msa1389170:CDS 30.0%
ATGCATGAATATAGACTTGA+GGG + tig0021219:6794-6813 Msa1389170:CDS 30.0%
! AATTTACCTTGGCAGTTTTA+GGG - tig0021219:6841-6860 Msa1389170:intergenic 30.0%
TTGGAATAGAGAATTTACCT+TGG - tig0021219:6852-6871 Msa1389170:intergenic 30.0%
!! TCATTTCGACTAATTGGTTT+TGG + tig0021219:7265-7284 Msa1389170:intron 30.0%
!!! TAATTGGTTTTGGTCTTTTG+TGG + tig0021219:7275-7294 Msa1389170:intron 30.0%
!! AGGTGATTTGATTTTGTCAA+TGG - tig0021219:7446-7465 Msa1389170:intergenic 30.0%
TTGGTTTCTTTCAATTGGAT+TGG - tig0021219:7485-7504 Msa1389170:intergenic 30.0%
ATTTGAAGGAACTTCAAAAG+GGG - tig0021219:7536-7555 Msa1389170:intergenic 30.0%
GATTTGAAGGAACTTCAAAA+GGG - tig0021219:7537-7556 Msa1389170:intergenic 30.0%
TGATTTGAAGGAACTTCAAA+AGG - tig0021219:7538-7557 Msa1389170:intergenic 30.0%
CATAAGGTAGATAGATCAAT+TGG - tig0021219:7718-7737 Msa1389170:intergenic 30.0%
CAATTGATCTATCTACCTTA+TGG + tig0021219:7716-7735 Msa1389170:CDS 30.0%
! ATGATTCAAACTTTTCTGCT+AGG + tig0021219:6278-6297 Msa1389170:CDS 30.0%
! TGATTCAAACTTTTCTGCTA+GGG + tig0021219:6279-6298 Msa1389170:CDS 30.0%
AGGACTCATTATAACTTACA+TGG - tig0021219:6349-6368 Msa1389170:intergenic 30.0%
TAATTCATATGCACGTAGAT+CGG + tig0021219:6392-6411 Msa1389170:intron 30.0%
TTTCATCGCATGTAAATGAT+AGG + tig0021219:6451-6470 Msa1389170:intron 30.0%
GTTATAGGTAAAGCCAAAAT+GGG + tig0021219:6569-6588 Msa1389170:intron 30.0%
AAAGATAAGGAGATTTACAG+AGG + tig0021219:6692-6711 Msa1389170:CDS 30.0%
!! CAATTACTTTTCTCTCCTTT+AGG - tig0021219:6770-6789 Msa1389170:intergenic 30.0%
CTAAAGGAGAGAAAAGTAAT+TGG + tig0021219:6768-6787 Msa1389170:CDS 30.0%
AATGCATGAATATAGACTTG+AGG + tig0021219:6793-6812 Msa1389170:CDS 30.0%
ATGCATGAATATAGACTTGA+GGG + tig0021219:6794-6813 Msa1389170:CDS 30.0%
! AATTTACCTTGGCAGTTTTA+GGG - tig0021219:6841-6860 Msa1389170:intergenic 30.0%
TTGGAATAGAGAATTTACCT+TGG - tig0021219:6852-6871 Msa1389170:intergenic 30.0%
!! TCATTTCGACTAATTGGTTT+TGG + tig0021219:7265-7284 Msa1389170:intron 30.0%
!!! TAATTGGTTTTGGTCTTTTG+TGG + tig0021219:7275-7294 Msa1389170:intron 30.0%
!! AGGTGATTTGATTTTGTCAA+TGG - tig0021219:7446-7465 Msa1389170:intergenic 30.0%
TTGGTTTCTTTCAATTGGAT+TGG - tig0021219:7485-7504 Msa1389170:intergenic 30.0%
ATTTGAAGGAACTTCAAAAG+GGG - tig0021219:7536-7555 Msa1389170:intergenic 30.0%
GATTTGAAGGAACTTCAAAA+GGG - tig0021219:7537-7556 Msa1389170:intergenic 30.0%
TGATTTGAAGGAACTTCAAA+AGG - tig0021219:7538-7557 Msa1389170:intergenic 30.0%
CATAAGGTAGATAGATCAAT+TGG - tig0021219:7718-7737 Msa1389170:intergenic 30.0%
CAATTGATCTATCTACCTTA+TGG + tig0021219:7716-7735 Msa1389170:CDS 30.0%
!! TTCAGTTTTGTGTAAGGAAG+AGG + tig0021219:6174-6193 Msa1389170:CDS 35.0%
CTAATAAGCTCTTCATCAGT+TGG - tig0021219:6235-6254 Msa1389170:intergenic 35.0%
ATTTGAACAAATCTGAGCCT+TGG + tig0021219:6317-6336 Msa1389170:CDS 35.0%
TTTGAACAAATCTGAGCCTT+GGG + tig0021219:6318-6337 Msa1389170:CDS 35.0%
AATTCATATGCACGTAGATC+GGG + tig0021219:6393-6412 Msa1389170:intron 35.0%
GGTTATAGGTAAAGCCAAAA+TGG + tig0021219:6568-6587 Msa1389170:intron 35.0%
!! AGAGATAAAAAGTACCCAAC+TGG + tig0021219:6620-6639 Msa1389170:CDS 35.0%
TATTAGTCCTCAAACCAGTT+GGG - tig0021219:6637-6656 Msa1389170:intergenic 35.0%
TACAGAGGAAAATCTCTTGT+TGG + tig0021219:6707-6726 Msa1389170:CDS 35.0%
! GAATTTACCTTGGCAGTTTT+AGG - tig0021219:6842-6861 Msa1389170:intergenic 35.0%
TGAATGTAATCACATGTGAC+AGG - tig0021219:7168-7187 Msa1389170:intergenic 35.0%
AGTGCTTCATTTCGACTAAT+TGG + tig0021219:7259-7278 Msa1389170:intron 35.0%
GCAAAAAGACATGTCATTCT+GGG + tig0021219:7344-7363 Msa1389170:CDS 35.0%
CCAACTTGGTTTCTTTCAAT+TGG - tig0021219:7490-7509 Msa1389170:intergenic 35.0%
CCAATTGAAAGAAACCAAGT+TGG + tig0021219:7487-7506 Msa1389170:CDS 35.0%
!! GGTGTTGTTAAAGGAATCAA+AGG - tig0021219:7515-7534 Msa1389170:intergenic 35.0%
!! TTCAAAAGGGGTGTTGTTAA+AGG - tig0021219:7524-7543 Msa1389170:intergenic 35.0%
! GGTTCATTTTACTCTACTCA+AGG + tig0021219:7592-7611 Msa1389170:CDS 35.0%
!! GGTAATGGCAAATTTGTTGA+GGG - tig0021219:7631-7650 Msa1389170:intergenic 35.0%
!! AGGTAATGGCAAATTTGTTG+AGG - tig0021219:7632-7651 Msa1389170:intergenic 35.0%
TCAACAAATTTGCCATTACC+TGG + tig0021219:7631-7650 Msa1389170:CDS 35.0%
TTATAGACAGAACCAGGTAA+TGG - tig0021219:7646-7665 Msa1389170:intergenic 35.0%
!! TTCAGTTTTGTGTAAGGAAG+AGG + tig0021219:6174-6193 Msa1389170:CDS 35.0%
CTAATAAGCTCTTCATCAGT+TGG - tig0021219:6235-6254 Msa1389170:intergenic 35.0%
ATTTGAACAAATCTGAGCCT+TGG + tig0021219:6317-6336 Msa1389170:CDS 35.0%
TTTGAACAAATCTGAGCCTT+GGG + tig0021219:6318-6337 Msa1389170:CDS 35.0%
AATTCATATGCACGTAGATC+GGG + tig0021219:6393-6412 Msa1389170:intron 35.0%
GGTTATAGGTAAAGCCAAAA+TGG + tig0021219:6568-6587 Msa1389170:intron 35.0%
!! AGAGATAAAAAGTACCCAAC+TGG + tig0021219:6620-6639 Msa1389170:CDS 35.0%
TATTAGTCCTCAAACCAGTT+GGG - tig0021219:6637-6656 Msa1389170:intergenic 35.0%
TACAGAGGAAAATCTCTTGT+TGG + tig0021219:6707-6726 Msa1389170:CDS 35.0%
! GAATTTACCTTGGCAGTTTT+AGG - tig0021219:6842-6861 Msa1389170:intergenic 35.0%
TGAATGTAATCACATGTGAC+AGG - tig0021219:7168-7187 Msa1389170:intergenic 35.0%
AGTGCTTCATTTCGACTAAT+TGG + tig0021219:7259-7278 Msa1389170:intron 35.0%
GCAAAAAGACATGTCATTCT+GGG + tig0021219:7344-7363 Msa1389170:CDS 35.0%
CCAACTTGGTTTCTTTCAAT+TGG - tig0021219:7490-7509 Msa1389170:intergenic 35.0%
CCAATTGAAAGAAACCAAGT+TGG + tig0021219:7487-7506 Msa1389170:CDS 35.0%
!! GGTGTTGTTAAAGGAATCAA+AGG - tig0021219:7515-7534 Msa1389170:intergenic 35.0%
!! TTCAAAAGGGGTGTTGTTAA+AGG - tig0021219:7524-7543 Msa1389170:intergenic 35.0%
! GGTTCATTTTACTCTACTCA+AGG + tig0021219:7592-7611 Msa1389170:CDS 35.0%
!! GGTAATGGCAAATTTGTTGA+GGG - tig0021219:7631-7650 Msa1389170:intergenic 35.0%
!! AGGTAATGGCAAATTTGTTG+AGG - tig0021219:7632-7651 Msa1389170:intergenic 35.0%
TCAACAAATTTGCCATTACC+TGG + tig0021219:7631-7650 Msa1389170:CDS 35.0%
TTATAGACAGAACCAGGTAA+TGG - tig0021219:7646-7665 Msa1389170:intergenic 35.0%
! ATCAGATGATTTTGCCTCCA+GGG + tig0021219:6197-6216 Msa1389170:CDS 40.0%
GTTCAAATCCACTTCTCCAA+TGG - tig0021219:6305-6324 Msa1389170:intergenic 40.0%
AACTTACATGGCAAATCCCA+AGG - tig0021219:6337-6356 Msa1389170:intergenic 40.0%
!! CCACTCTTTTTCACCCATTT+TGG - tig0021219:6585-6604 Msa1389170:intergenic 40.0%
CCAAAATGGGTGAAAAAGAG+TGG + tig0021219:6582-6601 Msa1389170:CDS 40.0%
!! AAAAGTACCCAACTGGTTTG+AGG + tig0021219:6627-6646 Msa1389170:CDS 40.0%
CTATTAGTCCTCAAACCAGT+TGG - tig0021219:6638-6657 Msa1389170:intergenic 40.0%
GAAGGCAACAGGAAAAGATA+AGG + tig0021219:6679-6698 Msa1389170:CDS 40.0%
!! TACAAAGGAAGAGCACCTAA+AGG + tig0021219:6752-6771 Msa1389170:CDS 40.0%
ATCACATTCACCTTATGCCA+CGG - tig0021219:6930-6949 Msa1389170:intergenic 40.0%
GGTGAATGTGATTGCAATTG+AGG + tig0021219:6938-6957 Msa1389170:intron 40.0%
CATTTGATCTCAGGTGTGTT+TGG + tig0021219:7079-7098 Msa1389170:intron 40.0%
!! TCATTAGTGTTGACGTGCAA+GGG + tig0021219:7217-7236 Msa1389170:intron 40.0%
! TCTTTTGTGGCAGATTGAGT+GGG + tig0021219:7288-7307 Msa1389170:intron 40.0%
GGCAAAAAGACATGTCATTC+TGG + tig0021219:7343-7362 Msa1389170:CDS 40.0%
!! CATGTCATTCTGGGATAATG+AGG + tig0021219:7353-7372 Msa1389170:CDS 40.0%
TAAGGTGATGAATCTGTGAG+TGG - tig0021219:7421-7440 Msa1389170:intergenic 40.0%
! TTCAATTGGATTGGAGAAGC+AGG - tig0021219:7476-7495 Msa1389170:intergenic 40.0%
AGGAATCAAAGGTTCCAACT+TGG - tig0021219:7504-7523 Msa1389170:intergenic 40.0%
CCATTGTTATAGACAGAACC+AGG - tig0021219:7652-7671 Msa1389170:intergenic 40.0%
!! CCTGGTTCTGTCTATAACAA+TGG + tig0021219:7649-7668 Msa1389170:CDS 40.0%
! ATCAGATGATTTTGCCTCCA+GGG + tig0021219:6197-6216 Msa1389170:CDS 40.0%
GTTCAAATCCACTTCTCCAA+TGG - tig0021219:6305-6324 Msa1389170:intergenic 40.0%
AACTTACATGGCAAATCCCA+AGG - tig0021219:6337-6356 Msa1389170:intergenic 40.0%
!! CCACTCTTTTTCACCCATTT+TGG - tig0021219:6585-6604 Msa1389170:intergenic 40.0%
CCAAAATGGGTGAAAAAGAG+TGG + tig0021219:6582-6601 Msa1389170:CDS 40.0%
!! AAAAGTACCCAACTGGTTTG+AGG + tig0021219:6627-6646 Msa1389170:CDS 40.0%
CTATTAGTCCTCAAACCAGT+TGG - tig0021219:6638-6657 Msa1389170:intergenic 40.0%
GAAGGCAACAGGAAAAGATA+AGG + tig0021219:6679-6698 Msa1389170:CDS 40.0%
!! TACAAAGGAAGAGCACCTAA+AGG + tig0021219:6752-6771 Msa1389170:CDS 40.0%
ATCACATTCACCTTATGCCA+CGG - tig0021219:6930-6949 Msa1389170:intergenic 40.0%
GGTGAATGTGATTGCAATTG+AGG + tig0021219:6938-6957 Msa1389170:intron 40.0%
CATTTGATCTCAGGTGTGTT+TGG + tig0021219:7079-7098 Msa1389170:intron 40.0%
!! TCATTAGTGTTGACGTGCAA+GGG + tig0021219:7217-7236 Msa1389170:intron 40.0%
! TCTTTTGTGGCAGATTGAGT+GGG + tig0021219:7288-7307 Msa1389170:intron 40.0%
GGCAAAAAGACATGTCATTC+TGG + tig0021219:7343-7362 Msa1389170:CDS 40.0%
!! CATGTCATTCTGGGATAATG+AGG + tig0021219:7353-7372 Msa1389170:CDS 40.0%
TAAGGTGATGAATCTGTGAG+TGG - tig0021219:7421-7440 Msa1389170:intergenic 40.0%
! TTCAATTGGATTGGAGAAGC+AGG - tig0021219:7476-7495 Msa1389170:intergenic 40.0%
AGGAATCAAAGGTTCCAACT+TGG - tig0021219:7504-7523 Msa1389170:intergenic 40.0%
CCATTGTTATAGACAGAACC+AGG - tig0021219:7652-7671 Msa1389170:intergenic 40.0%
!! CCTGGTTCTGTCTATAACAA+TGG + tig0021219:7649-7668 Msa1389170:CDS 40.0%
! GATCAGATGATTTTGCCTCC+AGG + tig0021219:6196-6215 Msa1389170:CDS 45.0%
! TGATTTTGCCTCCAGGGTTT+AGG + tig0021219:6203-6222 Msa1389170:CDS 45.0%
GTTGGATGAAACCTAAACCC+TGG - tig0021219:6217-6236 Msa1389170:intergenic 45.0%
! AACTTTTCTGCTAGGGCCAT+TGG + tig0021219:6286-6305 Msa1389170:CDS 45.0%
GAGGACTAATAGAGCTACTG+AGG + tig0021219:6646-6665 Msa1389170:CDS 45.0%
ACTAATAGAGCTACTGAGGC+TGG + tig0021219:6650-6669 Msa1389170:CDS 45.0%
!!! TTACCTTGGCAGTTTTAGGG+AGG - tig0021219:6838-6857 Msa1389170:intergenic 45.0%
GTAGTATAAGCCGTGGCATA+AGG + tig0021219:6917-6936 Msa1389170:intron 45.0%
ACACCTGAGATCAAATGCGT+TGG - tig0021219:7076-7095 Msa1389170:intergenic 45.0%
!! CTCATTAGTGTTGACGTGCA+AGG + tig0021219:7216-7235 Msa1389170:intron 45.0%
! GTCTTTTGTGGCAGATTGAG+TGG + tig0021219:7287-7306 Msa1389170:intron 45.0%
! AGATTGAGTGGGTGATTTGC+AGG + tig0021219:7299-7318 Msa1389170:intron 45.0%
! GATTGAGTGGGTGATTTGCA+GGG + tig0021219:7300-7319 Msa1389170:intron 45.0%
TCAATTGGTGCAGTTGAAGC+AGG - tig0021219:7703-7722 Msa1389170:intergenic 45.0%
! GATCAGATGATTTTGCCTCC+AGG + tig0021219:6196-6215 Msa1389170:CDS 45.0%
! TGATTTTGCCTCCAGGGTTT+AGG + tig0021219:6203-6222 Msa1389170:CDS 45.0%
GTTGGATGAAACCTAAACCC+TGG - tig0021219:6217-6236 Msa1389170:intergenic 45.0%
! AACTTTTCTGCTAGGGCCAT+TGG + tig0021219:6286-6305 Msa1389170:CDS 45.0%
GAGGACTAATAGAGCTACTG+AGG + tig0021219:6646-6665 Msa1389170:CDS 45.0%
ACTAATAGAGCTACTGAGGC+TGG + tig0021219:6650-6669 Msa1389170:CDS 45.0%
!!! TTACCTTGGCAGTTTTAGGG+AGG - tig0021219:6838-6857 Msa1389170:intergenic 45.0%
GTAGTATAAGCCGTGGCATA+AGG + tig0021219:6917-6936 Msa1389170:intron 45.0%
ACACCTGAGATCAAATGCGT+TGG - tig0021219:7076-7095 Msa1389170:intergenic 45.0%
!! CTCATTAGTGTTGACGTGCA+AGG + tig0021219:7216-7235 Msa1389170:intron 45.0%
! GTCTTTTGTGGCAGATTGAG+TGG + tig0021219:7287-7306 Msa1389170:intron 45.0%
! AGATTGAGTGGGTGATTTGC+AGG + tig0021219:7299-7318 Msa1389170:intron 45.0%
! GATTGAGTGGGTGATTTGCA+GGG + tig0021219:7300-7319 Msa1389170:intron 45.0%
TCAATTGGTGCAGTTGAAGC+AGG - tig0021219:7703-7722 Msa1389170:intergenic 45.0%
GGATGAAACCTAAACCCTGG+AGG - tig0021219:6214-6233 Msa1389170:intergenic 50.0%
TACTGAGGCTGGATACTGGA+AGG + tig0021219:6661-6680 Msa1389170:CDS 50.0%
CAACCTCCCTAAAACTGCCA+AGG + tig0021219:6832-6851 Msa1389170:CDS 50.0%
TGCGATCGTAGTATAAGCCG+TGG + tig0021219:6910-6929 Msa1389170:intron 50.0%
GCACCAACGCATTTGATCTC+AGG + tig0021219:7070-7089 Msa1389170:intron 50.0%
GACACAGACACATGTCGTGT+TGG - tig0021219:7131-7150 Msa1389170:intergenic 50.0%
GTGACAGGTCGTGATGGTTT+CGG - tig0021219:7153-7172 Msa1389170:intergenic 50.0%
TCACATGTGACAGGTCGTGA+TGG - tig0021219:7159-7178 Msa1389170:intergenic 50.0%
GGTGATGAATCTGTGAGTGG+TGG - tig0021219:7418-7437 Msa1389170:intergenic 50.0%
TTGGAGAAGCAGGACACGTA+AGG - tig0021219:7466-7485 Msa1389170:intergenic 50.0%
! GTGCAGTTGAAGCAGGTTGA+TGG - tig0021219:7696-7715 Msa1389170:intergenic 50.0%
GGATGAAACCTAAACCCTGG+AGG - tig0021219:6214-6233 Msa1389170:intergenic 50.0%
TACTGAGGCTGGATACTGGA+AGG + tig0021219:6661-6680 Msa1389170:CDS 50.0%
CAACCTCCCTAAAACTGCCA+AGG + tig0021219:6832-6851 Msa1389170:CDS 50.0%
TGCGATCGTAGTATAAGCCG+TGG + tig0021219:6910-6929 Msa1389170:intron 50.0%
GCACCAACGCATTTGATCTC+AGG + tig0021219:7070-7089 Msa1389170:intron 50.0%
GACACAGACACATGTCGTGT+TGG - tig0021219:7131-7150 Msa1389170:intergenic 50.0%
GTGACAGGTCGTGATGGTTT+CGG - tig0021219:7153-7172 Msa1389170:intergenic 50.0%
TCACATGTGACAGGTCGTGA+TGG - tig0021219:7159-7178 Msa1389170:intergenic 50.0%
GGTGATGAATCTGTGAGTGG+TGG - tig0021219:7418-7437 Msa1389170:intergenic 50.0%
TTGGAGAAGCAGGACACGTA+AGG - tig0021219:7466-7485 Msa1389170:intergenic 50.0%
! GTGCAGTTGAAGCAGGTTGA+TGG - tig0021219:7696-7715 Msa1389170:intergenic 50.0%
TGCTAGGGCCATTGGAGAAG+TGG + tig0021219:6294-6313 Msa1389170:CDS 55.0%
GAGCTACTGAGGCTGGATAC+TGG + tig0021219:6657-6676 Msa1389170:CDS 55.0%
GCTGGATACTGGAAGGCAAC+AGG + tig0021219:6668-6687 Msa1389170:CDS 55.0%
TGCTAGGGCCATTGGAGAAG+TGG + tig0021219:6294-6313 Msa1389170:CDS 55.0%
GAGCTACTGAGGCTGGATAC+TGG + tig0021219:6657-6676 Msa1389170:CDS 55.0%
GCTGGATACTGGAAGGCAAC+AGG + tig0021219:6668-6687 Msa1389170:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0021219 gene 6163 7747 6163 ID=Msa1389170;Name=Msa1389170
tig0021219 mRNA 6163 7747 6163 ID=Msa1389170-mRNA-1;Parent=Msa1389170;Name=Msa1389170-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|303
tig0021219 exon 6163 6349 6163 ID=Msa1389170-mRNA-1:exon:11488;Parent=Msa1389170-mRNA-1
tig0021219 exon 6576 6853 6576 ID=Msa1389170-mRNA-1:exon:11489;Parent=Msa1389170-mRNA-1
tig0021219 exon 7301 7747 7301 ID=Msa1389170-mRNA-1:exon:11490;Parent=Msa1389170-mRNA-1
tig0021219 CDS 6163 6349 6163 ID=Msa1389170-mRNA-1:cds;Parent=Msa1389170-mRNA-1
tig0021219 CDS 6576 6853 6576 ID=Msa1389170-mRNA-1:cds;Parent=Msa1389170-mRNA-1
tig0021219 CDS 7301 7747 7301 ID=Msa1389170-mRNA-1:cds;Parent=Msa1389170-mRNA-1
Gene Sequence

>Msa1389170

ATGGAAAATGTTTCAGTTTTGTGTAAGGAAGAGGATCAGATGATTTTGCCTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATTAGTCATTACCTTTACAAAAAGGTAAATGATTCAAACTTTTCTGCTAGGGCCATTGGAGAAGTGGATTTGAACAAATCTGAGCCTTGGGATTTGCCATGTAAAGCCAAAATGGGTGAAAAAGAGTGGTACTTTTTTTGTGTGAGAGATAAAAAGTACCCAACTGGTTTGAGGACTAATAGAGCTACTGAGGCTGGATACTGGAAGGCAACAGGAAAAGATAAGGAGATTTACAGAGGAAAATCTCTTGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAGAAAAGTAATTGGGTAATGCATGAATATAGACTTGAGGGTAAATTCTCTGTTTACAACCTCCCTAAAACTGCCAAGATTGAGTGGGTGATTTGCAGGGTATTCAAGAAGAATTTATCAGGCAAAAAGACATGTCATTCTGGGATAATGAGGTTAGAATCTTTTGGAAATGAAATGAGTTCTTCTCTTCTTCCACCACTCACAGATTCATCACCTTATTCCATTGACAAAATCAAATCACCTTACGTGTCCTGCTTCTCCAATCCAATTGAAAGAAACCAAGTTGGAACCTTTGATTCCTTTAACAACACCCCTTTTGAAGTTCCTTCAAATCATTCAATGAATCTTCCAAAAAATACACTTTCTATTGGTTCATTTTACTCTACTCAAGGAATTCAAGTTCATCCCTCAACAAATTTGCCATTACCTGGTTCTGTCTATAACAATGGATCAAACTTTGATAATCAGCACCATCAACCTGCTTCAACTGCACCAATTGATCTATCTACCTTATGGAATTACTGA

Protein sequence

>Msa1389170

MENVSVLCKEEDQMILPPGFRFHPTDEELISHYLYKKVNDSNFSARAIGEVDLNKSEPWDLPCKAKMGEKEWYFFCVRDKKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVYNLPKTAKIEWVICRVFKKNLSGKKTCHSGIMRLESFGNEMSSSLLPPLTDSSPYSIDKIKSPYVSCFSNPIERNQVGTFDSFNNTPFEVPSNHSMNLPKNTLSIGSFYSTQGIQVHPSTNLPLPGSVYNNGSNFDNQHHQPASTAPIDLSTLWNY*