AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1279060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279060 MtrunA17_Chr8g0349241 93.347 496 23 1 1 486 1 496 0.0 949
Msa1279060 MtrunA17_Chr7g0247261 61.220 410 154 3 53 458 35 443 0.0 569
Msa1279060 MtrunA17_Chr8g0349361 54.280 479 204 6 12 478 26 501 0.0 557
Msa1279060 MtrunA17_Chr7g0247251 63.566 387 138 1 75 458 10 396 0.0 554
Msa1279060 MtrunA17_Chr8g0349371 56.222 450 192 5 32 478 37 484 0.0 531
Msa1279060 MtrunA17_Chr6g0471441 53.882 425 195 1 55 478 70 494 0.0 530
Msa1279060 MtrunA17_Chr5g0397701 55.556 432 174 6 52 478 73 491 5.21e-176 503
Msa1279060 MtrunA17_Chr3g0104841 39.651 459 245 8 20 454 13 463 2.00e-119 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279060 AT5G23850.1 55.556 423 183 2 55 472 99 521 0.0 542
Msa1279060 AT2G45830.4 50.000 478 218 5 18 478 34 507 0.0 523
Msa1279060 AT2G45830.1 50.000 478 218 5 18 478 34 507 0.0 523
Msa1279060 AT3G48980.1 51.487 437 202 4 52 478 88 524 7.47e-180 515
Msa1279060 AT3G48980.2 51.487 437 202 4 52 478 94 530 1.05e-179 515
Msa1279060 AT3G61270.1 49.057 477 232 5 11 478 10 484 3.68e-176 504
Msa1279060 AT2G45830.3 55.738 366 162 0 113 478 1 366 2.41e-166 475
Msa1279060 AT2G45830.6 55.738 366 162 0 113 478 1 366 2.41e-166 475
Msa1279060 AT2G45830.2 55.738 366 162 0 113 478 1 366 2.41e-166 475
Msa1279060 AT2G45830.5 55.738 366 162 0 113 478 1 366 2.41e-166 475
Msa1279060 AT3G61280.1 51.636 428 200 4 57 478 97 523 4.30e-166 480
Msa1279060 AT1G63420.1 51.389 432 196 5 60 478 137 567 1.14e-163 475
Msa1279060 AT3G61290.1 50.353 425 202 4 59 478 17 437 2.31e-160 462
Msa1279060 AT2G45840.1 49.065 428 205 5 58 478 86 507 5.95e-159 461
Msa1279060 AT3G61270.2 54.098 366 167 1 113 478 1 365 9.00e-155 445
Msa1279060 AT1G07220.1 41.104 489 252 11 23 484 22 501 2.61e-131 390
Msa1279060 AT1G63420.2 54.348 322 138 4 60 373 137 457 2.01e-124 371
Msa1279060 AT3G61280.2 50.186 269 127 4 57 319 97 364 5.09e-94 290

Find 85 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAATACCTTATGCATTT+TGG 0.203852 8_3:-15794008 Msa1279060:CDS
TGAAGAGTTTGAGTTGTATA+AGG 0.263143 8_3:+15792416 None:intergenic
AAATTTCCAAGACACAAAAT+TGG 0.265181 8_3:-15793768 Msa1279060:CDS
CAAGGGATGTGTTCACAATA+TGG 0.273614 8_3:-15794737 Msa1279060:CDS
TGAGATTTGTTCTGAAAGTA+TGG 0.298990 8_3:-15792528 Msa1279060:CDS
CCACTATAACTCTTTATTCA+TGG 0.313202 8_3:+15792343 None:intergenic
CAAGAAGATGAAGGATAATA+AGG 0.313564 8_3:+15798826 None:intergenic
GATTAAGTTTGCAGTGGATT+GGG 0.334713 8_3:-15793423 Msa1279060:CDS
TGCTACCTTTGCACCACTAT+TGG 0.336505 8_3:-15793475 Msa1279060:CDS
TTGATGAAAGCTTTGACTAT+TGG 0.343613 8_3:+15798886 None:intergenic
CCCATGGTTTAAGATCTTCA+TGG 0.352277 8_3:+15794874 None:intergenic
CAAATTATCTATTATGTAGT+TGG 0.358455 8_3:+15792643 None:intergenic
TGGAAAATCAATGTACCTAT+AGG 0.373614 8_3:-15793748 Msa1279060:intron
CAAATCTCAACTGCTCCTTC+TGG 0.387979 8_3:+15792542 None:intergenic
TCCTTCTCAGCAATGGCAAC+AGG 0.392379 8_3:-15793801 Msa1279060:intron
CATGTCCACATTACTTCAAA+TGG 0.395790 8_3:-15794899 Msa1279060:CDS
AGATTAAGTTTGCAGTGGAT+TGG 0.397297 8_3:-15793424 Msa1279060:CDS
CTGATTGGACCTTCTGGGGT+TGG 0.400885 8_3:-15794539 Msa1279060:intron
TTTCTAATGGGAGATACTGC+TGG 0.418858 8_3:+15793976 None:intergenic
TCATCAATTTCTACAAGAAA+AGG 0.421386 8_3:-15792396 Msa1279060:CDS
AAGGGATGTGTTCACAATAT+GGG 0.434287 8_3:-15794736 Msa1279060:CDS
GTAAAGAAATCATAGTACTT+TGG 0.447141 8_3:+15793506 None:intergenic
CTTAAACCATGGGAGAAAAC+AGG 0.450613 8_3:-15794864 Msa1279060:CDS
CATTGAGATGGATTGTTGTT+GGG 0.452569 8_3:+15794940 None:intergenic
AACAGGAATCACAAGAGAAA+TGG 0.456719 8_3:-15794847 Msa1279060:CDS
TGGCACTGATAGGCCAATAG+TGG 0.459833 8_3:+15793462 None:intergenic
AGATGGACAAGTTGAGTTTG+AGG 0.459852 8_3:+15794968 None:intergenic
CAACCCCAGAAGGTCCAATC+AGG 0.463664 8_3:+15794540 None:intergenic
AAGGAAACATTTCATGGTTG+AGG 0.463785 8_3:-15792486 Msa1279060:CDS
ACATTTCATGGTTGAGGGCA+TGG 0.463967 8_3:-15792480 Msa1279060:CDS
TGAAACATTAGCTCTAAATC+AGG 0.466642 8_3:+15794675 None:intergenic
TTGCGTAATGTTGTTTCCCA+TGG 0.478952 8_3:+15794066 None:intergenic
TAAGCACTTTGATCATCCAT+TGG 0.483250 8_3:-15798790 Msa1279060:CDS
TTGTTTCCCATGGTCTTATG+TGG 0.487471 8_3:+15794076 None:intergenic
AGGAAACATTTCATGGTTGA+GGG 0.488331 8_3:-15792485 Msa1279060:CDS
GTTTGAGTTGTATAAGGAGA+AGG 0.488706 8_3:+15792422 None:intergenic
ATTGTTGTTGGGTAGGAAGA+TGG 0.490526 8_3:+15794951 None:intergenic
ACGCCACTGAAGAACATGAT+TGG 0.499765 8_3:-15793936 Msa1279060:CDS
TCATTGAGATGGATTGTTGT+TGG 0.505823 8_3:+15794939 None:intergenic
ATTAAGTTTGCAGTGGATTG+GGG 0.507989 8_3:-15793422 Msa1279060:CDS
AAGGCAACAAGAATGTCAAA+TGG 0.510499 8_3:-15794035 Msa1279060:CDS
TTGCCCTTCCAAAATGCATA+AGG 0.517407 8_3:+15794000 None:intergenic
TGGTGCAAGGAAACATTTCA+TGG 0.530997 8_3:-15792492 Msa1279060:CDS
TTTAGGCTTGTGGTTGTGGA+TGG 0.532168 8_3:-15794798 Msa1279060:CDS
TTTCCTGATTGGACCTTCTG+GGG 0.541065 8_3:-15794543 Msa1279060:CDS
GGTACAAGATTTATGCAGAA+GGG 0.544570 8_3:-15793592 Msa1279060:CDS
AAGAAAAGGAGAATTTAATA+CGG 0.545091 8_3:-15792382 Msa1279060:CDS
ATGTTTCCTTGCACCACGCA+AGG 0.545435 8_3:+15792499 None:intergenic
TGGATCCATTTGAAGTAATG+TGG 0.546946 8_3:+15794894 None:intergenic
CCATGAATAAAGAGTTATAG+TGG 0.549650 8_3:-15792343 None:intergenic
ACAAGAGAAATGGTTGAAAG+AGG 0.550127 8_3:-15794837 Msa1279060:CDS
AGAAGATGATTACTTTGTCA+AGG 0.556652 8_3:+15793390 None:intergenic
GTTTCATTGTTGCAATCAAG+TGG 0.560568 8_3:+15794990 None:intergenic
GAGATGGATTGTTGTTGGGT+AGG 0.565179 8_3:+15794944 None:intergenic
ATGGTGAATCATCATTGAGA+TGG 0.565251 8_3:+15794928 None:intergenic
TCCATGAAGATCTTAAACCA+TGG 0.568320 8_3:-15794875 Msa1279060:CDS
ATGCAAAATCTTATCAAACA+AGG 0.570824 8_3:-15794755 Msa1279060:CDS
TAAGGAGAAGGCATTGTGCA+TGG 0.571719 8_3:+15792434 None:intergenic
TTGCAATCAAGTGGGAATTG+AGG 0.572072 8_3:+15794999 None:intergenic
GACTTACAAGGTCAATCCAA+TGG 0.574254 8_3:+15798774 None:intergenic
CAACAAGAATGTCAAATGGA+AGG 0.574995 8_3:-15794031 Msa1279060:CDS
TGCAAAATCTTATCAAACAA+GGG 0.578981 8_3:-15794754 Msa1279060:CDS
CCATGAAGATCTTAAACCAT+GGG 0.585334 8_3:-15794874 Msa1279060:CDS
AGGTACAAGATTTATGCAGA+AGG 0.585736 8_3:-15793593 Msa1279060:CDS
CTGAGCTCCACATAAGACCA+TGG 0.593513 8_3:-15794083 Msa1279060:CDS
TGAAGAGATTAAGTTTGCAG+TGG 0.597774 8_3:-15793429 Msa1279060:CDS
TAATGTGGACATGATGAGGA+TGG 0.598426 8_3:+15794909 None:intergenic
TGGCTCTATGAACATAGTCA+TGG 0.599927 8_3:+15793526 None:intergenic
GTACAAGATTTATGCAGAAG+GGG 0.604983 8_3:-15793591 Msa1279060:CDS
TTTCATTGTTGCAATCAAGT+GGG 0.605373 8_3:+15794991 None:intergenic
AGGGATGTGTTCACAATATG+GGG 0.609928 8_3:-15794735 Msa1279060:CDS
ATTCCAATCATGTTCTTCAG+TGG 0.613079 8_3:+15793933 None:intergenic
CATGTTCCTTGCGTGGTGCA+AGG 0.615342 8_3:-15792505 Msa1279060:CDS
ATAGGCCAATAGTGGTGCAA+AGG 0.617869 8_3:+15793470 None:intergenic
ACATTACGCAATATACAAGA+AGG 0.621681 8_3:-15794054 Msa1279060:CDS
TAATACGGCAAGTGAAGACA+AGG 0.621694 8_3:-15792367 Msa1279060:CDS
GAAGCTTTACCAACCCCAGA+AGG 0.627314 8_3:+15794530 None:intergenic
TGAGCTCCACATAAGACCAT+GGG 0.632573 8_3:-15794082 Msa1279060:CDS
TTTATGCAGAAGGGGCAACA+TGG 0.637122 8_3:-15793583 Msa1279060:CDS
GAAGTAATGTGGACATGATG+AGG 0.645056 8_3:+15794905 None:intergenic
GTGCATGGAGGTGTATCACT+TGG 0.687133 8_3:+15792449 None:intergenic
AGTATGGCATGTTCCTTGCG+TGG 0.688064 8_3:-15792512 Msa1279060:CDS
GGAGAAGGCATTGTGCATGG+AGG 0.725676 8_3:+15792437 None:intergenic
AATACGGCAAGTGAAGACAA+GGG 0.753746 8_3:-15792366 Msa1279060:CDS
TTAGAGCTAATGTTTCAATG+TGG 0.759514 8_3:-15794669 Msa1279060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATAATATTTTAAAATT+TGG - chr8_3:15796921-15796940 Msa1279060:intron 0.0%
!!! CAAAAGTTTTTTTTTTTTTT+TGG - chr8_3:15792948-15792967 Msa1279060:intron 10.0%
!!! ATTGAATTTCTAAAATTATT+TGG - chr8_3:15794099-15794118 Msa1279060:intron 10.0%
!!! TCTCTTTTTTTTTTTTTTTT+TGG - chr8_3:15794507-15794526 Msa1279060:intron 10.0%
!! TTAGTACAATTATTATTATT+TGG - chr8_3:15794554-15794573 Msa1279060:CDS 10.0%
!!! TTTTATTATTATTACAAAGA+TGG - chr8_3:15794813-15794832 Msa1279060:CDS 10.0%
!!! TTAAAAATTACTATTTTCAA+AGG + chr8_3:15795224-15795243 None:intergenic 10.0%
!! TTTATTTGTTTATTAGTTAT+TGG + chr8_3:15795251-15795270 None:intergenic 10.0%
!! AAATGATGAATTATATTATT+GGG - chr8_3:15795715-15795734 Msa1279060:intron 10.0%
!!! AAAACTTTTTTTTTTAAACT+CGG + chr8_3:15798339-15798358 None:intergenic 10.0%
!!! AACGTTTGTATATAATATTT+TGG - chr8_3:15793268-15793287 Msa1279060:intron 15.0%
!!! ACGTTTGTATATAATATTTT+GGG - chr8_3:15793269-15793288 Msa1279060:intron 15.0%
!! AACAAAAAACATATTAAGAA+AGG - chr8_3:15793356-15793375 Msa1279060:intron 15.0%
!! ACAAAAAACATATTAAGAAA+GGG - chr8_3:15793357-15793376 Msa1279060:intron 15.0%
!!! ATATTTTATAGTTATCAAGA+AGG + chr8_3:15793519-15793538 None:intergenic 15.0%
!! TAAATTATATTTGCAAACAT+TGG + chr8_3:15794036-15794055 None:intergenic 15.0%
!! AAATATAATTTAACATGTGT+CGG - chr8_3:15794044-15794063 Msa1279060:CDS 15.0%
!!! GTTTTTGATGAAAAATTATT+TGG - chr8_3:15794132-15794151 Msa1279060:intron 15.0%
!! TTAATGTAAGTCATTTAAAA+TGG - chr8_3:15794405-15794424 Msa1279060:intron 15.0%
!!! TAATGTAAGTCATTTAAAAT+GGG - chr8_3:15794406-15794425 Msa1279060:intron 15.0%
!!! TTTTTTTTTTGGTTTGATTT+AGG - chr8_3:15794518-15794537 Msa1279060:intron 15.0%
!!! TTATTATTTGGCTTATATAA+AGG - chr8_3:15794566-15794585 Msa1279060:CDS 15.0%
!!! TATTATTTGGCTTATATAAA+GGG - chr8_3:15794567-15794586 Msa1279060:CDS 15.0%
!! AACAATGCATAATATATATA+AGG + chr8_3:15794637-15794656 None:intergenic 15.0%
!!! ATACTTTTTCATTTGTAATA+TGG - chr8_3:15794703-15794722 Msa1279060:CDS 15.0%
!! AATATAATTCATCATTTCAA+TGG + chr8_3:15795712-15795731 None:intergenic 15.0%
!! GAAATGATGAATTATATTAT+TGG - chr8_3:15795714-15795733 Msa1279060:intron 15.0%
!! AATGATGAATTATATTATTG+GGG - chr8_3:15795716-15795735 Msa1279060:intron 15.0%
!!! GTTTTTTTGTTTTTTTTTTG+TGG + chr8_3:15795845-15795864 None:intergenic 15.0%
!! TCTAATTAAAGTGAAATAAA+AGG - chr8_3:15797089-15797108 Msa1279060:intron 15.0%
!!! TTACATTTTTTTTTCTTGTT+AGG - chr8_3:15797129-15797148 Msa1279060:intron 15.0%
!!! TACATTTTTTTTTCTTGTTA+GGG - chr8_3:15797130-15797149 Msa1279060:intron 15.0%
!!! TTAATATTTACTGGTTAATA+CGG + chr8_3:15798542-15798561 None:intergenic 15.0%
!! ATACAACAAAACAAAAAGAT+GGG - chr8_3:15792375-15792394 Msa1279060:CDS 20.0%
!! TTTGAACAATTAAGTTATGT+TGG - chr8_3:15792648-15792667 Msa1279060:CDS 20.0%
!!! CGTTTGTATATAATATTTTG+GGG - chr8_3:15793270-15793289 Msa1279060:intron 20.0%
!! AATGACTTACATTAAAAATG+TGG + chr8_3:15794400-15794419 None:intergenic 20.0%
!! CATAATATATATAAGGTTTG+AGG + chr8_3:15794630-15794649 None:intergenic 20.0%
!!! GTATCATTTTAAAAATAGCT+TGG + chr8_3:15794687-15794706 None:intergenic 20.0%
!!! GTTATAGTTTTAAAAACCTA+AGG + chr8_3:15794945-15794964 None:intergenic 20.0%
!! AAATATATTACCACAACAAA+AGG + chr8_3:15795009-15795028 None:intergenic 20.0%
!! ATCTATTGAAATAAGTAATG+AGG + chr8_3:15795063-15795082 None:intergenic 20.0%
!! AAATATAATGAGGATGATAA+TGG + chr8_3:15795400-15795419 None:intergenic 20.0%
!! ATGTTAAAGATATGAATGAA+GGG + chr8_3:15795570-15795589 None:intergenic 20.0%
!! AATGTTAAAGATATGAATGA+AGG + chr8_3:15795571-15795590 None:intergenic 20.0%
!!! ATCTTTAACATTCTTTTTCT+TGG - chr8_3:15795579-15795598 Msa1279060:intron 20.0%
!! ATGATGAATTATATTATTGG+GGG - chr8_3:15795717-15795736 Msa1279060:intron 20.0%
!! TGCATTTAATTCCAATTAAA+GGG + chr8_3:15796736-15796755 None:intergenic 20.0%
!! ATGCATTTAATTCCAATTAA+AGG + chr8_3:15796737-15796756 None:intergenic 20.0%
!!! GCAAGTCATATTTTTTTTTT+TGG - chr8_3:15796762-15796781 Msa1279060:intron 20.0%
!!! TAAATCATTTTGATTTTAGG+TGG + chr8_3:15796869-15796888 None:intergenic 20.0%
!! ACCTAAAATCAAAATGATTT+AGG - chr8_3:15796868-15796887 Msa1279060:intron 20.0%
!! GTTTGTGTTGAAATTATTTA+TGG + chr8_3:15796965-15796984 None:intergenic 20.0%
!!! TTTTTATGATTATTTGTGCA+TGG - chr8_3:15797024-15797043 Msa1279060:intron 20.0%
!! AAAATTATTTGCATACCTAT+AGG + chr8_3:15797506-15797525 None:intergenic 20.0%
!!! TGATAATATAGTTTTGTTCT+GGG - chr8_3:15797992-15798011 Msa1279060:intron 20.0%
!! AAACATAACCTTAGTTTAAT+TGG - chr8_3:15798403-15798422 Msa1279060:intron 20.0%
!! AGTAATTAACCAGTAAATAT+TGG + chr8_3:15798446-15798465 None:intergenic 20.0%
!! CAAATTATCTATTATGTAGT+TGG + chr8_3:15798596-15798615 None:intergenic 20.0%
!! AAGAAAAGGAGAATTTAATA+CGG - chr8_3:15798854-15798873 Msa1279060:CDS 20.0%
! CATACAACAAAACAAAAAGA+TGG - chr8_3:15792374-15792393 Msa1279060:CDS 25.0%
! AAAGAAAAACAAGAAGATGA+AGG + chr8_3:15792422-15792441 None:intergenic 25.0%
! TAGTACTTCCAAAAAAAATC+AGG + chr8_3:15792583-15792602 None:intergenic 25.0%
! AATTAATTTCTTGTCCAGTA+AGG - chr8_3:15792683-15792702 Msa1279060:intron 25.0%
!! TAAAACGATATTTTCCTTAC+TGG + chr8_3:15792700-15792719 None:intergenic 25.0%
! AGTATTAAGATTGCTTATAC+TGG - chr8_3:15792870-15792889 Msa1279060:intron 25.0%
! AAAAAGTCAAAGTAAGTCAA+AGG - chr8_3:15793203-15793222 Msa1279060:intron 25.0%
! ACTTTACATTTCTCTTAAGA+TGG - chr8_3:15793295-15793314 Msa1279060:intron 25.0%
! AATAAATAACTCACTTAACC+TGG - chr8_3:15793397-15793416 Msa1279060:intron 25.0%
! TTCTTGCATGTAAAAAACAT+GGG + chr8_3:15793612-15793631 None:intergenic 25.0%
! ATTCTTGCATGTAAAAAACA+TGG + chr8_3:15793613-15793632 None:intergenic 25.0%
! CATAGCTATATGAAAATTGT+TGG - chr8_3:15793705-15793724 Msa1279060:intron 25.0%
! AAAACATCATGAGGAATAAA+TGG - chr8_3:15793936-15793955 Msa1279060:CDS 25.0%
!! AACATTGGTCTATAACTAAA+GGG + chr8_3:15794021-15794040 None:intergenic 25.0%
!! AAACATTGGTCTATAACTAA+AGG + chr8_3:15794022-15794041 None:intergenic 25.0%
! GATGAAAAATTATTTGGTTG+AGG - chr8_3:15794138-15794157 Msa1279060:intron 25.0%
! TCAACTGTGTAATGTATTAT+GGG + chr8_3:15794197-15794216 None:intergenic 25.0%
! ATCAACTGTGTAATGTATTA+TGG + chr8_3:15794198-15794217 None:intergenic 25.0%
! ATCCTAACTTCAATATAGTT+TGG + chr8_3:15794457-15794476 None:intergenic 25.0%
! ATTATTATTACAAAGATGGC+TGG - chr8_3:15794817-15794836 Msa1279060:CDS 25.0%
! TAATTGCTATGCATTCTTTA+TGG + chr8_3:15795145-15795164 None:intergenic 25.0%
! TGAAATATGATAGACTTACA+AGG + chr8_3:15795452-15795471 None:intergenic 25.0%
! GTTATAGATGTTAAACACTT+TGG - chr8_3:15795513-15795532 Msa1279060:intron 25.0%
!! TTAACATTCTTTTTCTTGGT+TGG - chr8_3:15795583-15795602 Msa1279060:intron 25.0%
! TCAATATGTCACATACTAAT+GGG + chr8_3:15795644-15795663 None:intergenic 25.0%
! ATCAATATGTCACATACTAA+TGG + chr8_3:15795645-15795664 None:intergenic 25.0%
! GTTGCGATTATTAATTAGTA+TGG - chr8_3:15795912-15795931 Msa1279060:intron 25.0%
! TTGAGATTGATCAATCTAAT+CGG - chr8_3:15796131-15796150 Msa1279060:intron 25.0%
!! GAAAAAACATGTCACATTTT+AGG - chr8_3:15796421-15796440 Msa1279060:intron 25.0%
! ATGCAAAATCTTATCAAACA+AGG - chr8_3:15796481-15796500 Msa1279060:intron 25.0%
! TGCAAAATCTTATCAAACAA+GGG - chr8_3:15796482-15796501 Msa1279060:intron 25.0%
! TGGACAAGAAAAAATTTCAA+GGG - chr8_3:15796604-15796623 Msa1279060:intron 25.0%
! TCTCCACAATAATGAAAAAT+AGG + chr8_3:15796651-15796670 None:intergenic 25.0%
!!! GCCTAAATCATTTTGATTTT+AGG + chr8_3:15796872-15796891 None:intergenic 25.0%
!! ATAGAATACCTTATGCATTT+TGG - chr8_3:15797228-15797247 Msa1279060:intron 25.0%
!!! TTTTCGAGTTCTTTTCTAAT+GGG + chr8_3:15797275-15797294 None:intergenic 25.0%
!! TGAATTTCGTCTTTGAAAAA+TGG + chr8_3:15797395-15797414 None:intergenic 25.0%
! AAATTTCCAAGACACAAAAT+TGG - chr8_3:15797468-15797487 Msa1279060:intron 25.0%
!! ATGTGTCATGTTTTATGTTA+AGG - chr8_3:15797623-15797642 Msa1279060:intron 25.0%
! GTAAAGAAATCATAGTACTT+TGG + chr8_3:15797733-15797752 None:intergenic 25.0%
!!! CTGATAATATAGTTTTGTTC+TGG - chr8_3:15797991-15798010 Msa1279060:intron 25.0%
! AATTGAGTCCAATTAAACTA+AGG + chr8_3:15798414-15798433 None:intergenic 25.0%
!! TAGTGGCATTTAAATGTTTT+AGG + chr8_3:15798486-15798505 None:intergenic 25.0%
! TCATCAATTTCTACAAGAAA+AGG - chr8_3:15798840-15798859 Msa1279060:CDS 25.0%
! TTGATGAAAGCTTTGACTAT+TGG + chr8_3:15792353-15792372 None:intergenic 30.0%
CAAGAAGATGAAGGATAATA+AGG + chr8_3:15792413-15792432 None:intergenic 30.0%
CATCAGAAGCTATAAACTAA+AGG + chr8_3:15792545-15792564 None:intergenic 30.0%
!!! AGTTGCTTCCTGATTTTTTT+TGG - chr8_3:15792572-15792591 Msa1279060:CDS 30.0%
TTTGGATAAGAGAACTTAAG+AGG + chr8_3:15792841-15792860 None:intergenic 30.0%
CTTAATACTGTGAGTATGTT+TGG + chr8_3:15792859-15792878 None:intergenic 30.0%
!! TTTTTGGTATATGTGCACTA+AGG - chr8_3:15792964-15792983 Msa1279060:intron 30.0%
!!! ATGTGCACTAAGGTTTTATT+TGG - chr8_3:15792974-15792993 Msa1279060:intron 30.0%
TATTTGGTATATGTGCACTA+AGG - chr8_3:15792990-15793009 Msa1279060:intron 30.0%
GAACTTGTATGACTTGAATT+TGG - chr8_3:15793037-15793056 Msa1279060:intron 30.0%
AAGGAACAATAACATGTAAG+AGG - chr8_3:15793222-15793241 Msa1279060:intron 30.0%
AACAATAACATGTAAGAGGT+TGG - chr8_3:15793226-15793245 Msa1279060:intron 30.0%
ACAATAACATGTAAGAGGTT+GGG - chr8_3:15793227-15793246 Msa1279060:intron 30.0%
TTGGGAATAAACCAAACTAT+TGG - chr8_3:15793245-15793264 Msa1279060:intron 30.0%
ATACAAACGTTCCAATAGTT+TGG + chr8_3:15793259-15793278 None:intergenic 30.0%
! TTTTTGTACGAGTCAACTTT+GGG - chr8_3:15793328-15793347 Msa1279060:intron 30.0%
TAAACAAACATCATCTTACC+AGG + chr8_3:15793418-15793437 None:intergenic 30.0%
GTACTAAATCTAGAAAAGCA+AGG - chr8_3:15793849-15793868 Msa1279060:intron 30.0%
GAAAAGCAAGGAAATAATGT+TGG - chr8_3:15793861-15793880 Msa1279060:intron 30.0%
AAGGAAATAATGTTGGAGTT+TGG - chr8_3:15793868-15793887 Msa1279060:intron 30.0%
! ACATTGGTCTATAACTAAAG+GGG + chr8_3:15794020-15794039 None:intergenic 30.0%
! GTAAGTCATTTAAAATGGGA+CGG - chr8_3:15794410-15794429 Msa1279060:intron 30.0%
GACCAAACTATATTGAAGTT+AGG - chr8_3:15794452-15794471 Msa1279060:intron 30.0%
CATTCTTTATGGTGATATCA+CGG + chr8_3:15795134-15795153 None:intergenic 30.0%
AAACAGTTACATCATGCAAT+TGG - chr8_3:15795270-15795289 Msa1279060:intron 30.0%
CTTAGAATTCTACAAGCTAA+TGG + chr8_3:15795300-15795319 None:intergenic 30.0%
!! CATTAGCTTGTAGAATTCTA+AGG - chr8_3:15795298-15795317 Msa1279060:intron 30.0%
AGCTTGCAACAAATATAATG+AGG + chr8_3:15795410-15795429 None:intergenic 30.0%
AATTATGACAATTGAGGGAA+AGG + chr8_3:15795619-15795638 None:intergenic 30.0%
TACCAGATTGAAAAATCTCA+CGG - chr8_3:15795761-15795780 Msa1279060:intron 30.0%
! TCTTTATTTCCATTTCGTCA+TGG - chr8_3:15795890-15795909 Msa1279060:intron 30.0%
GTAACCTATATATAGATCGA+AGG - chr8_3:15795934-15795953 Msa1279060:intron 30.0%
TCAACCTTCGATCTATATAT+AGG + chr8_3:15795941-15795960 None:intergenic 30.0%
! TTAGCATTACCTTTTGATGT+AGG - chr8_3:15795968-15795987 Msa1279060:intron 30.0%
! ATTTTTGTTCTTTCAGTCCA+AGG - chr8_3:15796158-15796177 Msa1279060:intron 30.0%
TTTCATTGTTGCAATCAAGT+GGG + chr8_3:15796248-15796267 None:intergenic 30.0%
! GGGGAATTTTACAACTTTTA+AGG - chr8_3:15796520-15796539 Msa1279060:intron 30.0%
! CTAAATCAGGTATTTTTCCA+GGG + chr8_3:15796551-15796570 None:intergenic 30.0%
! TCTAAATCAGGTATTTTTCC+AGG + chr8_3:15796552-15796571 None:intergenic 30.0%
!! TGAAACATTAGCTCTAAATC+AGG + chr8_3:15796564-15796583 None:intergenic 30.0%
TTAGAGCTAATGTTTCAATG+TGG - chr8_3:15796567-15796586 Msa1279060:intron 30.0%
TCAATGTGGTGATAAAAATG+TGG - chr8_3:15796581-15796600 Msa1279060:intron 30.0%
GTGGACAAGAAAAAATTTCA+AGG - chr8_3:15796603-15796622 Msa1279060:intron 30.0%
CAATAATGAAAAATAGGTGG+AGG + chr8_3:15796645-15796664 None:intergenic 30.0%
CCACAATAATGAAAAATAGG+TGG + chr8_3:15796648-15796667 None:intergenic 30.0%
!! CCACCTATTTTTCATTATTG+TGG - chr8_3:15796645-15796664 Msa1279060:intron 30.0%
!! TTGACATTGTTTTTCCTGAT+TGG - chr8_3:15796682-15796701 Msa1279060:intron 30.0%
AAGCTTCTATTCCCTTTAAT+TGG - chr8_3:15796722-15796741 Msa1279060:intron 30.0%
ACATTACGCAATATACAAGA+AGG - chr8_3:15797182-15797201 Msa1279060:intron 30.0%
! AATACCTTATGCATTTTGGA+AGG - chr8_3:15797232-15797251 Msa1279060:intron 30.0%
!! ATACCTTATGCATTTTGGAA+GGG - chr8_3:15797233-15797252 Msa1279060:intron 30.0%
!!! CTTTTCGAGTTCTTTTCTAA+TGG + chr8_3:15797276-15797295 None:intergenic 30.0%
! GATTTTCCAATTTTGTGTCT+TGG + chr8_3:15797477-15797496 None:intergenic 30.0%
TGGAAAATCAATGTACCTAT+AGG - chr8_3:15797488-15797507 Msa1279060:intron 30.0%
! AATCTCTTCACACATGTTTT+TGG + chr8_3:15797797-15797816 None:intergenic 30.0%
AGAAGATGATTACTTTGTCA+AGG + chr8_3:15797849-15797868 None:intergenic 30.0%
TTAAATTAGCCCACCTAAAT+TGG + chr8_3:15798087-15798106 None:intergenic 30.0%
TTCTTCCACAATAACCAATT+TGG - chr8_3:15798129-15798148 Msa1279060:intron 30.0%
TCTTCCACAATAACCAATTT+GGG - chr8_3:15798130-15798149 Msa1279060:intron 30.0%
!!! AAAAGTTTTGTTCCACAATG+AGG - chr8_3:15798350-15798369 Msa1279060:intron 30.0%
AAGGTTATGTTTGTGTATGT+AGG + chr8_3:15798395-15798414 None:intergenic 30.0%
ACATTCTAGCCAATATTTAC+TGG - chr8_3:15798434-15798453 Msa1279060:intron 30.0%
CCATGAATAAAGAGTTATAG+TGG + chr8_3:15798893-15798912 None:intergenic 30.0%
CCACTATAACTCTTTATTCA+TGG - chr8_3:15798500-15798519 Msa1279060:intron 30.0%
AACCAGTAAATATTAACTGC+AGG - chr8_3:15798546-15798565 Msa1279060:intron 30.0%
TTCAAACCAAAAATACCAGA+AGG - chr8_3:15798679-15798698 Msa1279060:intron 30.0%
!! TGAGATTTGTTCTGAAAGTA+TGG - chr8_3:15798708-15798727 Msa1279060:intron 30.0%
!! TGAAGAGTTTGAGTTGTATA+AGG + chr8_3:15798823-15798842 None:intergenic 30.0%
TAAGCACTTTGATCATCCAT+TGG - chr8_3:15792446-15792465 Msa1279060:CDS 35.0%
GAGATAGCATATGACTTACA+AGG + chr8_3:15792477-15792496 None:intergenic 35.0%
! GTTTTTGTACGAGTCAACTT+TGG - chr8_3:15793327-15793346 Msa1279060:intron 35.0%
TGCATGTAAAAAACATGGGA+TGG + chr8_3:15793608-15793627 None:intergenic 35.0%
GTTGGAAATTAGAGCTATGA+TGG - chr8_3:15793723-15793742 Msa1279060:intron 35.0%
!!! TAGACATGTGCTCCTTTTTT+AGG + chr8_3:15793782-15793801 None:intergenic 35.0%
AATTGTCATCCTTCAATCGA+CGG + chr8_3:15793826-15793845 None:intergenic 35.0%
CATCATGAGGAATAAATGGT+TGG - chr8_3:15793940-15793959 Msa1279060:CDS 35.0%
!!! GGGTTTTGTTATGCAAACAT+TGG + chr8_3:15794000-15794019 None:intergenic 35.0%
CTGTGTAATGTATTATGGGA+CGG + chr8_3:15794193-15794212 None:intergenic 35.0%
AAAAACCTAAGGATGAAGAG+AGG + chr8_3:15794934-15794953 None:intergenic 35.0%
!! ATTTTAGCACACTTTGTGCT+AGG - chr8_3:15794979-15794998 Msa1279060:CDS 35.0%
TGCATAGCAATTAGTACCAT+TGG - chr8_3:15795152-15795171 Msa1279060:intron 35.0%
GCATAGCAATTAGTACCATT+GGG - chr8_3:15795153-15795172 Msa1279060:intron 35.0%
CATAGCAATTAGTACCATTG+GGG - chr8_3:15795154-15795173 Msa1279060:intron 35.0%
CAGTGAATTGAATATGCGAA+AGG + chr8_3:15795328-15795347 None:intergenic 35.0%
TTCGCATATTCAATTCACTG+AGG - chr8_3:15795328-15795347 Msa1279060:intron 35.0%
TGTTGAACATAATGACGAGA+TGG - chr8_3:15795364-15795383 Msa1279060:intron 35.0%
!! AATGAGGATGATAATGGAGA+AGG + chr8_3:15795394-15795413 None:intergenic 35.0%
GATGTTAAACACTTTGGTCA+TGG - chr8_3:15795519-15795538 Msa1279060:intron 35.0%
GGGAGAATTATGACAATTGA+GGG + chr8_3:15795624-15795643 None:intergenic 35.0%
TGGGAGAATTATGACAATTG+AGG + chr8_3:15795625-15795644 None:intergenic 35.0%
TATTGATGAAGAGAGAGTGA+AGG - chr8_3:15795658-15795677 Msa1279060:intron 35.0%
AACCTCTTATCTCTATCTCA+GGG + chr8_3:15795813-15795832 None:intergenic 35.0%
TGTGTTCTTCCTACATCAAA+AGG + chr8_3:15795980-15795999 None:intergenic 35.0%
! AATAGTAGTGCTTGTTACCT+TGG + chr8_3:15796178-15796197 None:intergenic 35.0%
GTTTCATTGTTGCAATCAAG+TGG + chr8_3:15796249-15796268 None:intergenic 35.0%
!! CATTGAGATGGATTGTTGTT+GGG + chr8_3:15796299-15796318 None:intergenic 35.0%
!! TCATTGAGATGGATTGTTGT+TGG + chr8_3:15796300-15796319 None:intergenic 35.0%
ATGGTGAATCATCATTGAGA+TGG + chr8_3:15796311-15796330 None:intergenic 35.0%
TCCATGAAGATCTTAAACCA+TGG - chr8_3:15796361-15796380 Msa1279060:intron 35.0%
CCATGAAGATCTTAAACCAT+GGG - chr8_3:15796362-15796381 Msa1279060:intron 35.0%
AACAGGAATCACAAGAGAAA+TGG - chr8_3:15796389-15796408 Msa1279060:intron 35.0%
ACAAGAGAAATGGTTGAAAG+AGG - chr8_3:15796399-15796418 Msa1279060:intron 35.0%
AAGGGATGTGTTCACAATAT+GGG - chr8_3:15796500-15796519 Msa1279060:intron 35.0%
!!! CAACTTTTAAGGTTATACCC+TGG - chr8_3:15796531-15796550 Msa1279060:intron 35.0%
ATGTGGTGATAAAAATGTGG+TGG - chr8_3:15796584-15796603 Msa1279060:intron 35.0%
! AGAAGCAGTTAAGATTTGCT+CGG - chr8_3:15796840-15796859 Msa1279060:intron 35.0%
AAGGCAACAAGAATGTCAAA+TGG - chr8_3:15797201-15797220 Msa1279060:intron 35.0%
CAACAAGAATGTCAAATGGA+AGG - chr8_3:15797205-15797224 Msa1279060:intron 35.0%
ATTCCAATCATGTTCTTCAG+TGG + chr8_3:15797306-15797325 None:intergenic 35.0%
AGGTACAAGATTTATGCAGA+AGG - chr8_3:15797643-15797662 Msa1279060:intron 35.0%
GGTACAAGATTTATGCAGAA+GGG - chr8_3:15797644-15797663 Msa1279060:intron 35.0%
GTACAAGATTTATGCAGAAG+GGG - chr8_3:15797645-15797664 Msa1279060:intron 35.0%
TGAAGAGATTAAGTTTGCAG+TGG - chr8_3:15797807-15797826 Msa1279060:intron 35.0%
AGATTAAGTTTGCAGTGGAT+TGG - chr8_3:15797812-15797831 Msa1279060:intron 35.0%
! GATTAAGTTTGCAGTGGATT+GGG - chr8_3:15797813-15797832 Msa1279060:intron 35.0%
!! ATTAAGTTTGCAGTGGATTG+GGG - chr8_3:15797814-15797833 Msa1279060:intron 35.0%
CTTCCACAATAACCAATTTG+GGG - chr8_3:15798131-15798150 Msa1279060:intron 35.0%
TGCCTGCAGTTAATATTTAC+TGG + chr8_3:15798551-15798570 None:intergenic 35.0%
TAACTGCAGGCACAAAAAAT+TGG - chr8_3:15798559-15798578 Msa1279060:intron 35.0%
AAGGAAACATTTCATGGTTG+AGG - chr8_3:15798750-15798769 Msa1279060:intron 35.0%
AGGAAACATTTCATGGTTGA+GGG - chr8_3:15798751-15798770 Msa1279060:intron 35.0%
!! GTTTGAGTTGTATAAGGAGA+AGG + chr8_3:15798817-15798836 None:intergenic 35.0%
GACTTACAAGGTCAATCCAA+TGG + chr8_3:15792465-15792484 None:intergenic 40.0%
! GATGGTCGCGCTATTATTTT+AGG + chr8_3:15793590-15793609 None:intergenic 40.0%
GACGAATGGGTAAAACACTA+CGG - chr8_3:15793749-15793768 Msa1279060:CDS 40.0%
CATGTCTATAGTGTTAGTCG+CGG - chr8_3:15793794-15793813 Msa1279060:CDS 40.0%
GTGTAGAGGAAAACATCATG+AGG - chr8_3:15793927-15793946 Msa1279060:CDS 40.0%
GTAATGTATTATGGGACGGA+GGG + chr8_3:15794189-15794208 None:intergenic 40.0%
TGTAATGTATTATGGGACGG+AGG + chr8_3:15794190-15794209 None:intergenic 40.0%
! AGTCATTTAAAATGGGACGG+AGG - chr8_3:15794413-15794432 Msa1279060:intron 40.0%
! GTCATTTAAAATGGGACGGA+GGG - chr8_3:15794414-15794433 Msa1279060:intron 40.0%
TTGAAGTTAGGATGTGTGCT+TGG - chr8_3:15794464-15794483 Msa1279060:intron 40.0%
TGTGTGCTTGGCACATATTT+AGG - chr8_3:15794476-15794495 Msa1279060:intron 40.0%
AGGGAGCCAAGTTGTTTATT+TGG - chr8_3:15794586-15794605 Msa1279060:CDS 40.0%
GAGCCAAGTTGTTTATTTGG+CGG - chr8_3:15794589-15794608 Msa1279060:CDS 40.0%
! AAGGTTTGAGGTACAAACTC+CGG + chr8_3:15794618-15794637 None:intergenic 40.0%
AAGGATGAAGAGAGGTTTGT+GGG + chr8_3:15794926-15794945 None:intergenic 40.0%
TAAGGATGAAGAGAGGTTTG+TGG + chr8_3:15794927-15794946 None:intergenic 40.0%
ACAAACCTCTCTTCATCCTT+AGG - chr8_3:15794926-15794945 Msa1279060:CDS 40.0%
TCTTTATGGTGATATCACGG+AGG + chr8_3:15795131-15795150 None:intergenic 40.0%
CAATTAGTACCATTGGGGTT+AGG - chr8_3:15795159-15795178 Msa1279060:intron 40.0%
CACTATTATCCTAACCCCAA+TGG + chr8_3:15795171-15795190 None:intergenic 40.0%
TGTTGCAAGCTCTTTCATCT+TGG - chr8_3:15795419-15795438 Msa1279060:intron 40.0%
TGACAATTGAGGGAAAGGAA+AGG + chr8_3:15795614-15795633 None:intergenic 40.0%
TATTATTGGGGGAATCTGAG+AGG - chr8_3:15795728-15795747 Msa1279060:intron 40.0%
ATTATTGGGGGAATCTGAGA+GGG - chr8_3:15795729-15795748 Msa1279060:intron 40.0%
AACCCTGAGATAGAGATAAG+AGG - chr8_3:15795808-15795827 Msa1279060:intron 40.0%
GAACCTCTTATCTCTATCTC+AGG + chr8_3:15795814-15795833 None:intergenic 40.0%
TAATCGCAACCATGACGAAA+TGG + chr8_3:15795902-15795921 None:intergenic 40.0%
GGAAGAACACATATGTTGTG+TGG - chr8_3:15795989-15796008 Msa1279060:intron 40.0%
TTGCAATCAAGTGGGAATTG+AGG + chr8_3:15796240-15796259 None:intergenic 40.0%
! AGATGGACAAGTTGAGTTTG+AGG + chr8_3:15796271-15796290 None:intergenic 40.0%
! ATTGTTGTTGGGTAGGAAGA+TGG + chr8_3:15796288-15796307 None:intergenic 40.0%
! CCCATGGTTTAAGATCTTCA+TGG + chr8_3:15796365-15796384 None:intergenic 40.0%
CTTAAACCATGGGAGAAAAC+AGG - chr8_3:15796372-15796391 Msa1279060:intron 40.0%
! CATGTCACATTTTAGGCTTG+TGG - chr8_3:15796428-15796447 Msa1279060:intron 40.0%
! ACATTTTAGGCTTGTGGTTG+TGG - chr8_3:15796434-15796453 Msa1279060:intron 40.0%
CAAGGGATGTGTTCACAATA+TGG - chr8_3:15796499-15796518 Msa1279060:intron 40.0%
AGGGATGTGTTCACAATATG+GGG - chr8_3:15796501-15796520 Msa1279060:intron 40.0%
! TTTTTCCTGATTGGACCTTC+TGG - chr8_3:15796691-15796710 Msa1279060:intron 40.0%
! TTTTCCTGATTGGACCTTCT+GGG - chr8_3:15796692-15796711 Msa1279060:intron 40.0%
!! TTGTTTCCCATGGTCTTATG+TGG + chr8_3:15797163-15797182 None:intergenic 40.0%
!! TTGCGTAATGTTGTTTCCCA+TGG + chr8_3:15797173-15797192 None:intergenic 40.0%
TTGCCCTTCCAAAATGCATA+AGG + chr8_3:15797239-15797258 None:intergenic 40.0%
TTTCTAATGGGAGATACTGC+TGG + chr8_3:15797263-15797282 None:intergenic 40.0%
TTACTCGAAACAAAAGCGAG+AGG + chr8_3:15797366-15797385 None:intergenic 40.0%
! TGGCTCTATGAACATAGTCA+TGG + chr8_3:15797713-15797732 None:intergenic 40.0%
!!! CACATGTTTTTGGCACTGAT+AGG + chr8_3:15797787-15797806 None:intergenic 40.0%
!!! ATAGTTTTGTTCTGGGAGTG+TGG - chr8_3:15797999-15798018 Msa1279060:intron 40.0%
CAACCCCAAATTGGTTATTG+TGG + chr8_3:15798137-15798156 None:intergenic 40.0%
! CACAATAACCAATTTGGGGT+TGG - chr8_3:15798135-15798154 Msa1279060:intron 40.0%
AAGATCTCAAACCAACCACT+AGG + chr8_3:15798161-15798180 None:intergenic 40.0%
!! TAGTGGTTGGTTTGAGATCT+TGG - chr8_3:15798160-15798179 Msa1279060:intron 40.0%
CCACTGAAATTGACACTAGA+GGG + chr8_3:15798218-15798237 None:intergenic 40.0%
ACCACTGAAATTGACACTAG+AGG + chr8_3:15798219-15798238 None:intergenic 40.0%
GTATGTAGGAACAAAGTGCA+TGG + chr8_3:15798381-15798400 None:intergenic 40.0%
AATACGGCAAGTGAAGACAA+GGG + chr8_3:15798870-15798889 None:intergenic 40.0%
TAATACGGCAAGTGAAGACA+AGG + chr8_3:15798869-15798888 None:intergenic 40.0%
CAGGCACAAAAAATTGGAGA+AGG - chr8_3:15798565-15798584 Msa1279060:intron 40.0%
GCACAAAAAATTGGAGAAGG+AGG - chr8_3:15798568-15798587 Msa1279060:intron 40.0%
! ACTGCTCCTTCTGGTATTTT+TGG + chr8_3:15798688-15798707 None:intergenic 40.0%
TGGTGCAAGGAAACATTTCA+TGG - chr8_3:15798744-15798763 Msa1279060:intron 40.0%
TAATACGGCAAGTGAAGACA+AGG - chr8_3:15798869-15798888 Msa1279060:CDS 40.0%
AATACGGCAAGTGAAGACAA+GGG - chr8_3:15798870-15798889 Msa1279060:CDS 40.0%
TCTCACACACACTCACTTGT+TGG - chr8_3:15792625-15792644 Msa1279060:CDS 45.0%
GCAAAGCAGTAGATGTGTAG+AGG - chr8_3:15793913-15793932 Msa1279060:intron 45.0%
CCACCGCCAAATAAACAACT+TGG + chr8_3:15794595-15794614 None:intergenic 45.0%
CCAAGTTGTTTATTTGGCGG+TGG - chr8_3:15794592-15794611 Msa1279060:CDS 45.0%
GCAAAGACTCGACCAAAAGT+GGG + chr8_3:15794845-15794864 None:intergenic 45.0%
TGCAAAGACTCGACCAAAAG+TGG + chr8_3:15794846-15794865 None:intergenic 45.0%
TTAGCACACTTTGTGCTAGG+AGG - chr8_3:15794982-15795001 Msa1279060:CDS 45.0%
!! GGCCGTGAGATTTTTCAATC+TGG + chr8_3:15795766-15795785 None:intergenic 45.0%
!! GAGATGGATTGTTGTTGGGT+AGG + chr8_3:15796295-15796314 None:intergenic 45.0%
! GTGATTCCTGTTTTCTCCCA+TGG + chr8_3:15796381-15796400 None:intergenic 45.0%
TTTAGGCTTGTGGTTGTGGA+TGG - chr8_3:15796438-15796457 Msa1279060:intron 45.0%
TTTCCTGATTGGACCTTCTG+GGG - chr8_3:15796693-15796712 Msa1279060:intron 45.0%
TGAGCTCCACATAAGACCAT+GGG - chr8_3:15797154-15797173 Msa1279060:intron 45.0%
ACGCCACTGAAGAACATGAT+TGG - chr8_3:15797300-15797319 Msa1279060:intron 45.0%
! TTTTCGCTCCTTCTCAGCAA+TGG - chr8_3:15797428-15797447 Msa1279060:intron 45.0%
TTTATGCAGAAGGGGCAACA+TGG - chr8_3:15797653-15797672 Msa1279060:intron 45.0%
TGCTACCTTTGCACCACTAT+TGG - chr8_3:15797761-15797780 Msa1279060:intron 45.0%
ATAGGCCAATAGTGGTGCAA+AGG + chr8_3:15797769-15797788 None:intergenic 45.0%
!! TTGTTCTGGGAGTGTGGTAT+TGG - chr8_3:15798005-15798024 Msa1279060:intron 45.0%
!! TGGGAGTGTGGTATTGGTTT+GGG - chr8_3:15798011-15798030 Msa1279060:intron 45.0%
!! TGTGGTATTGGTTTGGGATC+TGG - chr8_3:15798017-15798036 Msa1279060:intron 45.0%
!! GTGGTATTGGTTTGGGATCT+GGG - chr8_3:15798018-15798037 Msa1279060:intron 45.0%
GAATCGAACTTGAGACCTCA+AGG + chr8_3:15798055-15798074 None:intergenic 45.0%
GTCTCAAGTTCGATTCTCTC+CGG - chr8_3:15798059-15798078 Msa1279060:intron 45.0%
! ATTCTCTCCGGTGCCAATTT+AGG - chr8_3:15798071-15798090 Msa1279060:intron 45.0%
CCCTCTAGTGTCAATTTCAG+TGG - chr8_3:15798215-15798234 Msa1279060:intron 45.0%
! TTTAATGGGGCACCTACAAG+TGG - chr8_3:15798267-15798286 Msa1279060:intron 45.0%
! TTAATGGGGCACCTACAAGT+GGG - chr8_3:15798268-15798287 Msa1279060:intron 45.0%
TGCATGGTTCAACCTCATTG+TGG + chr8_3:15798365-15798384 None:intergenic 45.0%
CAAATCTCAACTGCTCCTTC+TGG + chr8_3:15798697-15798716 None:intergenic 45.0%
ACATTTCATGGTTGAGGGCA+TGG - chr8_3:15798756-15798775 Msa1279060:intron 45.0%
!! TAAGGAGAAGGCATTGTGCA+TGG + chr8_3:15798805-15798824 None:intergenic 45.0%
!!! TGAATTAATTTATTTATTTT+AGG + chr8_3:15793151-15793170 None:intergenic 5.0%
!! AAATTATTTATTTATTTAGA+AGG - chr8_3:15797885-15797904 Msa1279060:intron 5.0%
! AGCTATGATGGCGAGACGAA+TGG - chr8_3:15793735-15793754 Msa1279060:intron 50.0%
! GCTATGATGGCGAGACGAAT+GGG - chr8_3:15793736-15793755 Msa1279060:intron 50.0%
GGGTAAAACACTACGGCGAT+CGG - chr8_3:15793756-15793775 Msa1279060:CDS 50.0%
TACGGCGATCGGCCTAAAAA+AGG - chr8_3:15793767-15793786 Msa1279060:CDS 50.0%
TATAGTGTTAGTCGCGGCGT+TGG - chr8_3:15793800-15793819 Msa1279060:intron 50.0%
!! GGAGTTTGGTGTTGCAGCAA+TGG - chr8_3:15793882-15793901 Msa1279060:intron 50.0%
GTTGTTTATTTGGCGGTGGC+CGG - chr8_3:15794596-15794615 Msa1279060:CDS 50.0%
! GCTAGGAGGACCTTTTGTTG+TGG - chr8_3:15794996-15795015 Msa1279060:CDS 50.0%
! GGTGGAGGTGACACATTTTC+TGG + chr8_3:15796630-15796649 None:intergenic 50.0%
GAAGCTTTACCAACCCCAGA+AGG + chr8_3:15796709-15796728 None:intergenic 50.0%
CTGAGCTCCACATAAGACCA+TGG - chr8_3:15797153-15797172 Msa1279060:intron 50.0%
TCCTTCTCAGCAATGGCAAC+AGG - chr8_3:15797435-15797454 Msa1279060:intron 50.0%
TCCTGTTGCCATTGCTGAGA+AGG + chr8_3:15797439-15797458 None:intergenic 50.0%
!! TGGCACTGATAGGCCAATAG+TGG + chr8_3:15797777-15797796 None:intergenic 50.0%
!! CTGGGAGTGTGGTATTGGTT+TGG - chr8_3:15798010-15798029 Msa1279060:intron 50.0%
TCGAACTTGAGACCTCAAGG+AGG + chr8_3:15798052-15798071 None:intergenic 50.0%
! TCTCCGGTGCCAATTTAGGT+GGG - chr8_3:15798075-15798094 Msa1279060:intron 50.0%
TAGCCCACCTAAATTGGCAC+CGG + chr8_3:15798081-15798100 None:intergenic 50.0%
AGTCCATACAAAGCCCTGCT+CGG - chr8_3:15798241-15798260 Msa1279060:intron 50.0%
AGTATGGCATGTTCCTTGCG+TGG - chr8_3:15798724-15798743 Msa1279060:intron 50.0%
ATGTTTCCTTGCACCACGCA+AGG + chr8_3:15798740-15798759 None:intergenic 50.0%
! GTGCATGGAGGTGTATCACT+TGG + chr8_3:15798790-15798809 None:intergenic 50.0%
! AGATGGCTGGAGCCCACTTT+TGG - chr8_3:15794830-15794849 Msa1279060:CDS 55.0%
ATCTCACGGCCAACAGAGAG+TGG - chr8_3:15795775-15795794 Msa1279060:intron 55.0%
TCTCACGGCCAACAGAGAGT+GGG - chr8_3:15795776-15795795 Msa1279060:intron 55.0%
CAACCCCAGAAGGTCCAATC+AGG + chr8_3:15796699-15796718 None:intergenic 55.0%
!! CTGATTGGACCTTCTGGGGT+TGG - chr8_3:15796697-15796716 Msa1279060:intron 55.0%
! CTCTCCGGTGCCAATTTAGG+TGG - chr8_3:15798074-15798093 Msa1279060:intron 55.0%
CCACTAGGCCAACCCCAAAT+TGG + chr8_3:15798146-15798165 None:intergenic 55.0%
!! CCAATTTGGGGTTGGCCTAG+TGG - chr8_3:15798143-15798162 Msa1279060:intron 55.0%
!! TTTGGGGTTGGCCTAGTGGT+TGG - chr8_3:15798147-15798166 Msa1279060:intron 55.0%
GTCCATACAAAGCCCTGCTC+GGG - chr8_3:15798242-15798261 Msa1279060:intron 55.0%
! AGCCCTGCTCGGGCTTTTAA+TGG - chr8_3:15798252-15798271 Msa1279060:intron 55.0%
! GCCCTGCTCGGGCTTTTAAT+GGG - chr8_3:15798253-15798272 Msa1279060:intron 55.0%
CCCCATTAAAAGCCCGAGCA+GGG + chr8_3:15798257-15798276 None:intergenic 55.0%
! CCCTGCTCGGGCTTTTAATG+GGG - chr8_3:15798254-15798273 Msa1279060:intron 55.0%
CATGTTCCTTGCGTGGTGCA+AGG - chr8_3:15798731-15798750 Msa1279060:intron 55.0%
!! GGAGAAGGCATTGTGCATGG+AGG + chr8_3:15798802-15798821 None:intergenic 55.0%
CTCACGGCCAACAGAGAGTG+GGG - chr8_3:15795777-15795796 Msa1279060:intron 60.0%
GGCCAACAGAGAGTGGGGAT+CGG - chr8_3:15795782-15795801 Msa1279060:intron 60.0%
GCCAACAGAGAGTGGGGATC+GGG - chr8_3:15795783-15795802 Msa1279060:intron 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG - chr8_3:15798037-15798056 Msa1279060:intron 60.0%
! AGCCCGAGCAGGGCTTTGTA+TGG + chr8_3:15798247-15798266 None:intergenic 60.0%
GCCCCATTAAAAGCCCGAGC+AGG + chr8_3:15798258-15798277 None:intergenic 60.0%
! ATGGGGCACCTACAAGTGGG+CGG - chr8_3:15798271-15798290 Msa1279060:intron 60.0%
CAATCCCACCGCCCACTTGT+AGG + chr8_3:15798282-15798301 None:intergenic 60.0%
CTACAAGTGGGCGGTGGGAT+TGG - chr8_3:15798280-15798299 Msa1279060:intron 60.0%
! GGCGGTGGGATTGGTACACT+CGG - chr8_3:15798289-15798308 Msa1279060:intron 60.0%
!! CGGCGTTGGCCGTCGATTGA+AGG - chr8_3:15793814-15793833 Msa1279060:intron 65.0%
GCCCGATCCCCACTCTCTGT+TGG + chr8_3:15795787-15795806 None:intergenic 65.0%
GGCACCTACAAGTGGGCGGT+GGG - chr8_3:15798275-15798294 Msa1279060:intron 65.0%
GGGCACCTACAAGTGGGCGG+TGG - chr8_3:15798274-15798293 Msa1279060:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 15792346 15798912 15792346 ID=Msa1279060;Name=Msa1279060
chr8_3 mRNA 15792346 15798912 15792346 ID=Msa1279060-mRNA-1;Parent=Msa1279060;Name=Msa1279060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0.8|0.66|6|0|486
chr8_3 exon 15798781 15798912 15798781 ID=Msa1279060-mRNA-1:exon:6112;Parent=Msa1279060-mRNA-1
chr8_3 exon 15794540 15795054 15794540 ID=Msa1279060-mRNA-1:exon:6111;Parent=Msa1279060-mRNA-1
chr8_3 exon 15793915 15794107 15793915 ID=Msa1279060-mRNA-1:exon:6110;Parent=Msa1279060-mRNA-1
chr8_3 exon 15793749 15793813 15793749 ID=Msa1279060-mRNA-1:exon:6109;Parent=Msa1279060-mRNA-1
chr8_3 exon 15793403 15793613 15793403 ID=Msa1279060-mRNA-1:exon:6108;Parent=Msa1279060-mRNA-1
chr8_3 exon 15792346 15792690 15792346 ID=Msa1279060-mRNA-1:exon:6107;Parent=Msa1279060-mRNA-1
chr8_3 CDS 15798781 15798912 15798781 ID=Msa1279060-mRNA-1:cds;Parent=Msa1279060-mRNA-1
chr8_3 CDS 15794540 15795054 15794540 ID=Msa1279060-mRNA-1:cds;Parent=Msa1279060-mRNA-1
chr8_3 CDS 15793915 15794107 15793915 ID=Msa1279060-mRNA-1:cds;Parent=Msa1279060-mRNA-1
chr8_3 CDS 15793749 15793813 15793749 ID=Msa1279060-mRNA-1:cds;Parent=Msa1279060-mRNA-1
chr8_3 CDS 15793403 15793613 15793403 ID=Msa1279060-mRNA-1:cds;Parent=Msa1279060-mRNA-1
chr8_3 CDS 15792346 15792690 15792346 ID=Msa1279060-mRNA-1:cds;Parent=Msa1279060-mRNA-1
Gene Sequence

>Msa1279060

ATGGCCAATAGTCAAAGCTTTCATCAAGCATACAACAAAACAAAAAGATGGGTTTCAACTTCAGCCTTATTATCCTTCATCTTCTTGTTTTTCTTTGCTCTAAGCACTTTGATCATCCATTGGATTGACCTTACAATAGAAGTCTTCAACAACATTAAACAACAACCTCAATTCCCACTTGATTGCAACAATGAAACCTCAAACTCAACTTGTCCATCTTCCTACCCAACAACAATCCATCTCAATGATGATTCACCATCCTCATCATGTCCACATTACTTCAAATGGATCCATGAAGATCTTAAACCATGGGAGAAAACAGGAATCACAAGAGAAATGGTTGAAAGAGGAAAAAACATGTCACATTTTAGGCTTGTGGTTGTGGATGGAAAAGCATACATAGATAAATATGCAAAATCTTATCAAACAAGGGATGTGTTCACAATATGGGGAATTTTACAACTTTTAAGGTTATACCCTGGAAAAATACCTGATTTAGAGCTAATGTTTCAATGTGGTGATAAAAATGTGGTGGACAAGAAAAAATTTCAAGGGCCAGAAAATGTGTCACCTCCACCTATTTTTCATTATTGTGGAGATGAAGATACAATTGACATTGTTTTTCCTGATTGGACCTTCTGGGGTTGGGCTGAGCTCCACATAAGACCATGGGAAACAACATTACGCAATATACAAGAAGGCAACAAGAATGTCAAATGGAAGGATAGAATACCTTATGCATTTTGGAAGGGCAATCCAGCAGTATCTCCCATTAGAAAAGAACTCGAAAAGTGTAACGCCACTGAAGAACATGATTGGAATGCTCGAATATATGACATCCAATGGCAACAGGAGAGATCAAAAAATTTCCAAGACACAAAATTGGAAAATCAATGTACCTATAGGTACAAGATTTATGCAGAAGGGGCAACATGGTCTGTGAGTGAAAAGTACATAATAGCATGTGACTCCATGACTATGTTCATAGAGCCAAAGTACTATGATTTCTTTACAAGAAGCTTGCTACCTTTGCACCACTATTGGCCTATCAGTGCCAAAAACATGTGTGAAGAGATTAAGTTTGCAGTGGATTGGGGAAATGCTCACCTTGACAAAGCACAAAAAATTGGAGAAGGAGGAACCAACTACATAATAGATAATTTGAAGATGAAGTTTGTTTATGATTACATGTTTCATCTATTAAATAGTTATGCTAAGCTTTTGAGATTCAAACCAAAAATACCAGAAGGAGCAGTTGAGATTTGTTCTGAAAGTATGGCATGTTCCTTGCGTGGTGCAAGGAAACATTTCATGGTTGAGGGCATGGTGATGTCACCAAGTGATACACCTCCATGCACAATGCCTTCTCCTTATACAACTCAAACTCTTCATCAATTTCTACAAGAAAAGGAGAATTTAATACGGCAAGTGAAGACAAGGGCCATGAATAAAGAGTTATAG

Protein sequence

>Msa1279060

MANSQSFHQAYNKTKRWVSTSALLSFIFLFFFALSTLIIHWIDLTIEVFNNIKQQPQFPLDCNNETSNSTCPSSYPTTIHLNDDSPSSSCPHYFKWIHEDLKPWEKTGITREMVERGKNMSHFRLVVVDGKAYIDKYAKSYQTRDVFTIWGILQLLRLYPGKIPDLELMFQCGDKNVVDKKKFQGPENVSPPPIFHYCGDEDTIDIVFPDWTFWGWAELHIRPWETTLRNIQEGNKNVKWKDRIPYAFWKGNPAVSPIRKELEKCNATEEHDWNARIYDIQWQQERSKNFQDTKLENQCTYRYKIYAEGATWSVSEKYIIACDSMTMFIEPKYYDFFTRSLLPLHHYWPISAKNMCEEIKFAVDWGNAHLDKAQKIGEGGTNYIIDNLKMKFVYDYMFHLLNSYAKLLRFKPKIPEGAVEICSESMACSLRGARKHFMVEGMVMSPSDTPPCTMPSPYTTQTLHQFLQEKENLIRQVKTRAMNKEL*