AlfalfaGEDB | Msa0562360

M. sativa cultivar zhongmu-4 / Msa0562360

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562360	XP_039684437.1	98.496	133	0	1	1	133	34	164	7.52e-90	268

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562360	A0A396GU48	98.496	133	0	1	1	133	34	164	3.59e-90	268

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050530	Msa0562360	0.812124	4.964926e-51	-8.615850e-47
Msa0100600	Msa0562360	0.806254	8.995898e-50	-8.615850e-47
Msa0100890	Msa0562360	0.810760	9.819319e-51	-8.615850e-47
Msa0191570	Msa0562360	0.819706	1.008995e-52	-8.615850e-47
Msa0214210	Msa0562360	0.800506	1.395855e-48	-8.615850e-47
Msa0233570	Msa0562360	0.835329	1.788330e-56	-8.615850e-47
Msa0274650	Msa0562360	0.817040	4.053395e-52	-8.615850e-47
Msa0312250	Msa0562360	0.821448	4.016691e-53	-8.615850e-47
Msa0541740	Msa0562360	0.806630	7.493259e-50	-8.615850e-47
Msa0557850	Msa0562360	0.811808	5.817061e-51	-8.615850e-47
Msa0562360	Msa0571350	0.841673	4.119806e-58	-8.615850e-47
Msa0562360	Msa0575710	0.817216	3.699719e-52	-8.615850e-47
Msa0562360	Msa0616230	0.952825	1.049083e-110	-8.615850e-47
Msa0562360	Msa0653160	0.842795	2.078220e-58	-8.615850e-47
Msa0562360	Msa0655710	0.977038	5.459094e-143	-8.615850e-47
Msa0562360	Msa0660260	0.812870	3.410647e-51	-8.615850e-47
Msa0562360	Msa0688620	0.838735	2.410057e-57	-8.615850e-47
Msa0562360	Msa0699560	0.946491	4.171772e-105	-8.615850e-47
Msa0562360	Msa0701250	0.800102	1.687017e-48	-8.615850e-47
Msa0562360	Msa0706690	0.811575	6.536454e-51	-8.615850e-47
Msa0562360	Msa0749190	0.843750	1.156382e-58	-8.615850e-47
Msa0562360	Msa0750520	0.838939	2.134231e-57	-8.615850e-47
Msa0562360	Msa0831820	0.808539	2.946847e-50	-8.615850e-47
Msa0562360	Msa0929900	0.803736	3.023962e-49	-8.615850e-47
Msa0562360	Msa0978980	0.803630	3.180738e-49	-8.615850e-47
Msa0562360	Msa1033420	0.811334	7.373070e-51	-8.615850e-47
Msa0562360	Msa1071410	0.836859	7.307698e-57	-8.615850e-47
Msa0562360	Msa1073060	0.813498	2.482499e-51	-8.615850e-47
Msa0562360	Msa1144990	0.829674	4.511213e-55	-8.615850e-47
Msa0562360	Msa1212700	0.822023	2.956150e-53	-8.615850e-47
Msa0562360	Msa1212920	0.844633	6.698623e-59	-8.615850e-47
Msa0562360	Msa1267930	0.800291	1.543951e-48	-8.615850e-47
Msa0562360	Msa1308860	0.811795	5.854596e-51	-8.615850e-47
Msa0562360	Msa1331650	0.823037	1.718010e-53	-8.615850e-47
Msa0562360	Msa1343460	0.828655	7.968112e-55	-8.615850e-47
Msa0562360	Msa1368170	0.822624	2.144096e-53	-8.615850e-47
Msa0562360	Msa1371270	0.818813	1.611304e-52	-8.615850e-47
Msa0562360	Msa1372030	0.807253	5.532088e-50	-8.615850e-47
Msa0562360	Msa1377140	0.816036	6.800297e-52	-8.615850e-47
Msa0562360	Msa1381800	0.839281	1.740900e-57	-8.615850e-47
Msa0562360	Msa1453030	0.816239	6.126202e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562360	MtrunA17_Chr8g0375551	98.496	133	0	1	1	133	34	164	6.92e-94	268
Msa0562360	MtrunA17_Chr5g0410051	36.842	76	47	1	14	89	50	124	7.58e-14	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562360	AT1G31940.1	46.939	49	26	0	18	66	53	101	3.22e-12	60.5
Msa0562360	AT2G35585.1	41.818	55	31	1	14	67	48	102	4.84e-11	57.4

Find 68 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGAAAATAGTGATATTC+TGG	0.208224	4_1:-62185071	None:intergenic
CGCTTTCGCACTCCTCGAGC+TGG	0.260475	4_1:-62184964	None:intergenic
CCATTGATCAAAAGGGTAAT+TGG	0.293161	4_1:+62183817	Msa0562360:five_prime_UTR
AAAGGAGAGTGAGCATAAAA+AGG	0.300414	4_1:-62183619	None:intergenic
TTTATAGTTATATATGCTAA+TGG	0.325570	4_1:+62183732	Msa0562360:five_prime_UTR
TTAGATAGACAAATGTTTGT+AGG	0.331683	4_1:+62185370	Msa0562360:three_prime_UTR
TCTTCATGCACCAATGCTTC+CGG	0.370311	4_1:-62185215	None:intergenic
TTTCTTGTCCATTGATCAAA+AGG	0.371603	4_1:+62183809	Msa0562360:five_prime_UTR
GGCTCCATAGGATGTTCAAC+TGG	0.393061	4_1:-62184104	None:intergenic
TTATAGTTATATATGCTAAT+GGG	0.403730	4_1:+62183733	Msa0562360:five_prime_UTR
AGGAAGAGAGGTGAGATGTC+TGG	0.414508	4_1:+62184904	Msa0562360:CDS
GCTTTCGCACTCCTCGAGCT+GGG	0.417036	4_1:-62184963	None:intergenic
TTTCCCAGTTGAACATCCTA+TGG	0.422933	4_1:+62184100	Msa0562360:CDS
TTAGCTCGGTTGGTGAGTTA+AGG	0.434129	4_1:-62185452	None:intergenic
ACACTAATGACTGAAGATTC+AGG	0.437311	4_1:-62184161	None:intergenic
ACCCTCACTCATGGATCATC+AGG	0.442814	4_1:+62184994	Msa0562360:CDS
TTGGAAAATAGTGATATTCT+GGG	0.444826	4_1:-62185070	None:intergenic
TTTCCAAGTGCTTCAGCAGT+TGG	0.454811	4_1:+62185086	Msa0562360:CDS
AGAGGTGAGATGTCTGGGTC+TGG	0.464003	4_1:+62184910	Msa0562360:CDS
TTCACTTAGGAAAGAGAAAG+AGG	0.470639	4_1:-62183652	None:intergenic
AATTGGAGAATTTATTGATA+CGG	0.474812	4_1:+62183834	Msa0562360:five_prime_UTR
AGAGGAACACAGAAAGCATA+AGG	0.478521	4_1:+62184884	Msa0562360:CDS
CAGTCATAGAGTTAGTTAAG+AGG	0.484753	4_1:-62183784	None:intergenic
AACGACATATGATGAAAACT+TGG	0.485073	4_1:-62185241	None:intergenic
GTAAGATTTATGTTTCACTT+AGG	0.493864	4_1:-62183665	None:intergenic
TGTCCAACTGCTGAAGCACT+TGG	0.496596	4_1:-62185089	None:intergenic
TCTTCATCCGGTGGCTCCAT+AGG	0.504589	4_1:-62184116	None:intergenic
GGGTCTGGACAAAGAACAGC+TGG	0.506189	4_1:+62184925	Msa0562360:CDS
AGATGTGGCATTCTCATCAA+TGG	0.507933	4_1:-62185033	None:intergenic
ATATTCTGGGATTGTAGAGG+AGG	0.508528	4_1:-62185057	None:intergenic
CGGCATCACACCCTCACTCA+TGG	0.508751	4_1:+62184985	Msa0562360:CDS
GAAAGAGGAGAAGAAATGAA+AGG	0.518038	4_1:-62183637	None:intergenic
CCTTGCATGGAATGTTGTGA+TGG	0.518542	4_1:-62185140	None:intergenic
AACTTAAAATAGAGCAAGAC+CGG	0.519643	4_1:+62185196	Msa0562360:three_prime_UTR
GTCCACATAGTTAGCTCGGT+TGG	0.520181	4_1:-62185462	None:intergenic
ATGACTGAAGATTCAGGCAT+TGG	0.525006	4_1:-62184155	None:intergenic
TAGAGCAAGACCGGAAGCAT+TGG	0.526276	4_1:+62185205	Msa0562360:three_prime_UTR
GCCACCGGATGAAGATCGTC+CGG	0.527419	4_1:+62184124	Msa0562360:CDS
GGAAGAGAGGTGAGATGTCT+GGG	0.529996	4_1:+62184905	Msa0562360:CDS
AAAATGAATCCCTCCTTGCA+TGG	0.531998	4_1:-62185153	None:intergenic
CAGCTCGAGGAGTGCGAAAG+CGG	0.537056	4_1:+62184965	Msa0562360:CDS
TGGACAAAGAACAGCTGGCA+TGG	0.537925	4_1:+62184930	Msa0562360:CDS
ATGAAAGGATGCATGAAAAG+AGG	0.540753	4_1:+62184866	Msa0562360:CDS
TCAGGCATTGGACATTTCAC+CGG	0.545910	4_1:-62184143	None:intergenic
TATTCTGGGATTGTAGAGGA+GGG	0.548828	4_1:-62185056	None:intergenic
CTTGCATGGAATGTTGTGAT+GGG	0.556419	4_1:-62185139	None:intergenic
TTCACCGGACGATCTTCATC+CGG	0.561909	4_1:-62184128	None:intergenic
TACACAGAACAGTATCATCA+TGG	0.562804	4_1:+62184022	Msa0562360:exon
CTTTCGCACTCCTCGAGCTG+GGG	0.565176	4_1:-62184962	None:intergenic
TGAACATCCTATGGAGCCAC+CGG	0.581194	4_1:+62184109	Msa0562360:CDS
ACAGAAAGCATAAGGAAGAG+AGG	0.581626	4_1:+62184892	Msa0562360:CDS
TTCTTGTCCATTGATCAAAA+GGG	0.584575	4_1:+62183810	Msa0562360:five_prime_UTR
ACGACATATGATGAAAACTT+GGG	0.591479	4_1:-62185240	None:intergenic
CAACCCTCTGATGATGATGA+TGG	0.596745	4_1:-62184061	None:intergenic
CACAACATTCCATGCAAGGA+GGG	0.597092	4_1:+62185144	Msa0562360:three_prime_UTR
ACTGTTCTGTGTAGTTACAC+TGG	0.597328	4_1:-62184012	None:intergenic
TCCTGATGATCCATGAGTGA+GGG	0.599861	4_1:-62184995	None:intergenic
GACACAGATGCCCCAGCTCG+AGG	0.604247	4_1:+62184952	Msa0562360:CDS
CCATCACAACATTCCATGCA+AGG	0.608498	4_1:+62185140	Msa0562360:three_prime_UTR
ACCGGACGATCTTCATCCGG+TGG	0.608873	4_1:-62184125	None:intergenic
GATTGTAGAGGAGGGAGATG+TGG	0.615192	4_1:-62185048	None:intergenic
GTGATATTCTGGGATTGTAG+AGG	0.620846	4_1:-62185060	None:intergenic
ACCACCATCATCATCATCAG+AGG	0.627709	4_1:+62184057	Msa0562360:CDS
GCTCCATAGGATGTTCAACT+GGG	0.634698	4_1:-62184103	None:intergenic
CCACCATCATCATCATCAGA+GGG	0.645144	4_1:+62184058	Msa0562360:CDS
CTCCTGATGATCCATGAGTG+AGG	0.684933	4_1:-62184996	None:intergenic
TCACAACATTCCATGCAAGG+AGG	0.689773	4_1:+62185143	Msa0562360:three_prime_UTR
CCCTCTGATGATGATGATGG+TGG	0.719053	4_1:-62184058	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTATAGTTATATATGCTAA+TGG	+	chr4_1:62183732-62183751	Msa0562360:five_prime_UTR	15.0%
!!	TTATAGTTATATATGCTAAT+GGG	+	chr4_1:62183733-62183752	Msa0562360:five_prime_UTR	15.0%
!!!	CAACTAATTTTGTATATTTT+AGG	+	chr4_1:62183953-62183972	Msa0562360:intron	15.0%
!!	TTTATAGTTATATATGCTAA+TGG	+	chr4_1:62183732-62183751	Msa0562360:five_prime_UTR	15.0%
!!	TTATAGTTATATATGCTAAT+GGG	+	chr4_1:62183733-62183752	Msa0562360:five_prime_UTR	15.0%
!!!	CAACTAATTTTGTATATTTT+AGG	+	chr4_1:62183953-62183972	Msa0562360:intron	15.0%
!!	AATTGGAGAATTTATTGATA+CGG	+	chr4_1:62183834-62183853	Msa0562360:five_prime_UTR	20.0%
!!!	TTGTATATTTTAGGAAGAAA+AGG	+	chr4_1:62183962-62183981	Msa0562360:intron	20.0%
!!!	AAAACTAATCAGCTTTTAAA+TGG	+	chr4_1:62184439-62184458	Msa0562360:intron	20.0%
!!	CAAAATGTCTAATGAATATT+TGG	-	chr4_1:62184536-62184555	None:intergenic	20.0%
!!!	CAAATATTCATTAGACATTT+TGG	+	chr4_1:62184534-62184553	Msa0562360:intron	20.0%
!!	AACAATTATTGACAAATGTT+TGG	+	chr4_1:62184671-62184690	Msa0562360:intron	20.0%
!!	ATAAAGGATGAAGATAAAAA+TGG	-	chr4_1:62184732-62184751	None:intergenic	20.0%
!!!	AACAAGTTTTAGTGAAATAA+AGG	-	chr4_1:62184748-62184767	None:intergenic	20.0%
!!!	TTATTTCACTAAAACTTGTT+TGG	+	chr4_1:62184748-62184767	Msa0562360:intron	20.0%
!!!	TGTTGTTATGTTAGATTTTA+AGG	+	chr4_1:62185395-62185414	Msa0562360:three_prime_UTR	20.0%
!!!	AAAATGAATTTTAAGGTCTT+GGG	-	chr4_1:62185427-62185446	None:intergenic	20.0%
!!	AATTGGAGAATTTATTGATA+CGG	+	chr4_1:62183834-62183853	Msa0562360:five_prime_UTR	20.0%
!!!	TTGTATATTTTAGGAAGAAA+AGG	+	chr4_1:62183962-62183981	Msa0562360:intron	20.0%
!!!	AAAACTAATCAGCTTTTAAA+TGG	+	chr4_1:62184439-62184458	Msa0562360:intron	20.0%
!!	CAAAATGTCTAATGAATATT+TGG	-	chr4_1:62184536-62184555	None:intergenic	20.0%
!!!	CAAATATTCATTAGACATTT+TGG	+	chr4_1:62184534-62184553	Msa0562360:intron	20.0%
!!	AACAATTATTGACAAATGTT+TGG	+	chr4_1:62184671-62184690	Msa0562360:intron	20.0%
!!	ATAAAGGATGAAGATAAAAA+TGG	-	chr4_1:62184732-62184751	None:intergenic	20.0%
!!!	AACAAGTTTTAGTGAAATAA+AGG	-	chr4_1:62184748-62184767	None:intergenic	20.0%
!!!	TTATTTCACTAAAACTTGTT+TGG	+	chr4_1:62184748-62184767	Msa0562360:intron	20.0%
!!!	TGTTGTTATGTTAGATTTTA+AGG	+	chr4_1:62185395-62185414	Msa0562360:three_prime_UTR	20.0%
!!!	AAAATGAATTTTAAGGTCTT+GGG	-	chr4_1:62185427-62185446	None:intergenic	20.0%
!	GTAAGATTTATGTTTCACTT+AGG	-	chr4_1:62183668-62183687	None:intergenic	25.0%
!	TATTTGGATAGATATATCAC+AGG	-	chr4_1:62184520-62184539	None:intergenic	25.0%
!	AAGGAAATCAATATAGTTCT+AGG	-	chr4_1:62184630-62184649	None:intergenic	25.0%
!!!	TAGAACTATATTGATTTCCT+TGG	+	chr4_1:62184629-62184648	Msa0562360:intron	25.0%
!!	AAAACTTGTTTGGATTCTTT+AGG	+	chr4_1:62184758-62184777	Msa0562360:intron	25.0%
!	TTGGAAAATAGTGATATTCT+GGG	-	chr4_1:62185073-62185092	None:intergenic	25.0%
!	TTAGATAGACAAATGTTTGT+AGG	+	chr4_1:62185370-62185389	Msa0562360:three_prime_UTR	25.0%
!!!	CAAAATGAATTTTAAGGTCT+TGG	-	chr4_1:62185428-62185447	None:intergenic	25.0%
!!	GGAATGCAAAATGAATTTTA+AGG	-	chr4_1:62185434-62185453	None:intergenic	25.0%
!	GTAAGATTTATGTTTCACTT+AGG	-	chr4_1:62183668-62183687	None:intergenic	25.0%
!	TATTTGGATAGATATATCAC+AGG	-	chr4_1:62184520-62184539	None:intergenic	25.0%
!	AAGGAAATCAATATAGTTCT+AGG	-	chr4_1:62184630-62184649	None:intergenic	25.0%
!!!	TAGAACTATATTGATTTCCT+TGG	+	chr4_1:62184629-62184648	Msa0562360:intron	25.0%
!!	AAAACTTGTTTGGATTCTTT+AGG	+	chr4_1:62184758-62184777	Msa0562360:intron	25.0%
!	TTGGAAAATAGTGATATTCT+GGG	-	chr4_1:62185073-62185092	None:intergenic	25.0%
!	TTAGATAGACAAATGTTTGT+AGG	+	chr4_1:62185370-62185389	Msa0562360:three_prime_UTR	25.0%
!!!	CAAAATGAATTTTAAGGTCT+TGG	-	chr4_1:62185428-62185447	None:intergenic	25.0%
!!	GGAATGCAAAATGAATTTTA+AGG	-	chr4_1:62185434-62185453	None:intergenic	25.0%
	TTTCTTGTCCATTGATCAAA+AGG	+	chr4_1:62183809-62183828	Msa0562360:five_prime_UTR	30.0%
	TTCTTGTCCATTGATCAAAA+GGG	+	chr4_1:62183810-62183829	Msa0562360:five_prime_UTR	30.0%
!!	TATTTTAGGAAGAAAAGGAG+AGG	+	chr4_1:62183967-62183986	Msa0562360:intron	30.0%
!!	ATTTTAGGAAGAAAAGGAGA+GGG	+	chr4_1:62183968-62183987	Msa0562360:intron	30.0%
	GTTACCTACTTATCTTAAGA+TGG	+	chr4_1:62184207-62184226	Msa0562360:intron	30.0%
	TTTGCCATCTTAAGATAAGT+AGG	-	chr4_1:62184214-62184233	None:intergenic	30.0%
	ATTATATGAACACGACTACA+AGG	-	chr4_1:62184337-62184356	None:intergenic	30.0%
!	ATAATGTGTCACTAAACACT+AGG	+	chr4_1:62184355-62184374	Msa0562360:intron	30.0%
	ACCAATTTAGAAATTTCAGG+TGG	+	chr4_1:62184385-62184404	Msa0562360:intron	30.0%
	ACCACCTGAAATTTCTAAAT+TGG	-	chr4_1:62184389-62184408	None:intergenic	30.0%
!	TTCATTAGACATTTTGGACT+AGG	+	chr4_1:62184540-62184559	Msa0562360:intron	30.0%
!	TCATTAGACATTTTGGACTA+GGG	+	chr4_1:62184541-62184560	Msa0562360:intron	30.0%
	AATGTTTGGCAACAATTTAC+CGG	+	chr4_1:62184685-62184704	Msa0562360:intron	30.0%
	CTTGGAAAATAGTGATATTC+TGG	-	chr4_1:62185074-62185093	None:intergenic	30.0%
	AACTTAAAATAGAGCAAGAC+CGG	+	chr4_1:62185196-62185215	Msa0562360:three_prime_UTR	30.0%
	ACGACATATGATGAAAACTT+GGG	-	chr4_1:62185243-62185262	None:intergenic	30.0%
	AACGACATATGATGAAAACT+TGG	-	chr4_1:62185244-62185263	None:intergenic	30.0%
	TTTCTTGTCCATTGATCAAA+AGG	+	chr4_1:62183809-62183828	Msa0562360:five_prime_UTR	30.0%
	TTCTTGTCCATTGATCAAAA+GGG	+	chr4_1:62183810-62183829	Msa0562360:five_prime_UTR	30.0%
!!	TATTTTAGGAAGAAAAGGAG+AGG	+	chr4_1:62183967-62183986	Msa0562360:intron	30.0%
!!	ATTTTAGGAAGAAAAGGAGA+GGG	+	chr4_1:62183968-62183987	Msa0562360:intron	30.0%
	GTTACCTACTTATCTTAAGA+TGG	+	chr4_1:62184207-62184226	Msa0562360:intron	30.0%
	TTTGCCATCTTAAGATAAGT+AGG	-	chr4_1:62184214-62184233	None:intergenic	30.0%
	ATTATATGAACACGACTACA+AGG	-	chr4_1:62184337-62184356	None:intergenic	30.0%
!	ATAATGTGTCACTAAACACT+AGG	+	chr4_1:62184355-62184374	Msa0562360:intron	30.0%
	ACCAATTTAGAAATTTCAGG+TGG	+	chr4_1:62184385-62184404	Msa0562360:intron	30.0%
	ACCACCTGAAATTTCTAAAT+TGG	-	chr4_1:62184389-62184408	None:intergenic	30.0%
!	TTCATTAGACATTTTGGACT+AGG	+	chr4_1:62184540-62184559	Msa0562360:intron	30.0%
!	TCATTAGACATTTTGGACTA+GGG	+	chr4_1:62184541-62184560	Msa0562360:intron	30.0%
	AATGTTTGGCAACAATTTAC+CGG	+	chr4_1:62184685-62184704	Msa0562360:intron	30.0%
	CTTGGAAAATAGTGATATTC+TGG	-	chr4_1:62185074-62185093	None:intergenic	30.0%
	AACTTAAAATAGAGCAAGAC+CGG	+	chr4_1:62185196-62185215	Msa0562360:three_prime_UTR	30.0%
	ACGACATATGATGAAAACTT+GGG	-	chr4_1:62185243-62185262	None:intergenic	30.0%
	AACGACATATGATGAAAACT+TGG	-	chr4_1:62185244-62185263	None:intergenic	30.0%
	AAAGGAGAGTGAGCATAAAA+AGG	-	chr4_1:62183622-62183641	None:intergenic	35.0%
	GAAAGAGGAGAAGAAATGAA+AGG	-	chr4_1:62183640-62183659	None:intergenic	35.0%
	TTCACTTAGGAAAGAGAAAG+AGG	-	chr4_1:62183655-62183674	None:intergenic	35.0%
	AAAGAAGCTGAGAAAAATGC+TGG	-	chr4_1:62183702-62183721	None:intergenic	35.0%
!	CATTTTTCTCAGCTTCTTTC+TGG	+	chr4_1:62183703-62183722	Msa0562360:five_prime_UTR	35.0%
	CAGTCATAGAGTTAGTTAAG+AGG	-	chr4_1:62183787-62183806	None:intergenic	35.0%
!	CCAATTACCCTTTTGATCAA+TGG	-	chr4_1:62183820-62183839	None:intergenic	35.0%
	CCATTGATCAAAAGGGTAAT+TGG	+	chr4_1:62183817-62183836	Msa0562360:five_prime_UTR	35.0%
!	AGCTGCTGCTATATATGTTT+TGG	-	chr4_1:62183902-62183921	None:intergenic	35.0%
	TACACAGAACAGTATCATCA+TGG	+	chr4_1:62184022-62184041	Msa0562360:exon	35.0%
	ACACTAATGACTGAAGATTC+AGG	-	chr4_1:62184164-62184183	None:intergenic	35.0%
	GGGACCAATTTAGAAATTTC+AGG	+	chr4_1:62184382-62184401	Msa0562360:intron	35.0%
!!	CATTAGACATTTTGGACTAG+GGG	+	chr4_1:62184542-62184561	Msa0562360:intron	35.0%
	ACATTTAACAACTGCTACCA+AGG	-	chr4_1:62184649-62184668	None:intergenic	35.0%
!	CATGACTTTTACAGGATGAA+AGG	+	chr4_1:62184851-62184870	Msa0562360:intron	35.0%
	ATGAAAGGATGCATGAAAAG+AGG	+	chr4_1:62184866-62184885	Msa0562360:CDS	35.0%
	AAAGGAGAGTGAGCATAAAA+AGG	-	chr4_1:62183622-62183641	None:intergenic	35.0%
	GAAAGAGGAGAAGAAATGAA+AGG	-	chr4_1:62183640-62183659	None:intergenic	35.0%
	TTCACTTAGGAAAGAGAAAG+AGG	-	chr4_1:62183655-62183674	None:intergenic	35.0%
	AAAGAAGCTGAGAAAAATGC+TGG	-	chr4_1:62183702-62183721	None:intergenic	35.0%
!	CATTTTTCTCAGCTTCTTTC+TGG	+	chr4_1:62183703-62183722	Msa0562360:five_prime_UTR	35.0%
	CAGTCATAGAGTTAGTTAAG+AGG	-	chr4_1:62183787-62183806	None:intergenic	35.0%
!	CCAATTACCCTTTTGATCAA+TGG	-	chr4_1:62183820-62183839	None:intergenic	35.0%
	CCATTGATCAAAAGGGTAAT+TGG	+	chr4_1:62183817-62183836	Msa0562360:five_prime_UTR	35.0%
!	AGCTGCTGCTATATATGTTT+TGG	-	chr4_1:62183902-62183921	None:intergenic	35.0%
	TACACAGAACAGTATCATCA+TGG	+	chr4_1:62184022-62184041	Msa0562360:exon	35.0%
	ACACTAATGACTGAAGATTC+AGG	-	chr4_1:62184164-62184183	None:intergenic	35.0%
	GGGACCAATTTAGAAATTTC+AGG	+	chr4_1:62184382-62184401	Msa0562360:intron	35.0%
!!	CATTAGACATTTTGGACTAG+GGG	+	chr4_1:62184542-62184561	Msa0562360:intron	35.0%
	ACATTTAACAACTGCTACCA+AGG	-	chr4_1:62184649-62184668	None:intergenic	35.0%
!	CATGACTTTTACAGGATGAA+AGG	+	chr4_1:62184851-62184870	Msa0562360:intron	35.0%
	ATGAAAGGATGCATGAAAAG+AGG	+	chr4_1:62184866-62184885	Msa0562360:CDS	35.0%
	ACTGTTCTGTGTAGTTACAC+TGG	-	chr4_1:62184015-62184034	None:intergenic	40.0%
	TTTCCCAGTTGAACATCCTA+TGG	+	chr4_1:62184100-62184119	Msa0562360:CDS	40.0%
	ATGACTGAAGATTCAGGCAT+TGG	-	chr4_1:62184158-62184177	None:intergenic	40.0%
	CTAGAAAGAGAAGCTGCAAA+GGG	-	chr4_1:62184572-62184591	None:intergenic	40.0%
	CAACAATTTACCGGTCATTC+TGG	+	chr4_1:62184694-62184713	Msa0562360:intron	40.0%
	TCAGTAGTTTCCAGAATGAC+CGG	-	chr4_1:62184707-62184726	None:intergenic	40.0%
!!	TGCAGTTCATTCTGAAGTTC+AGG	+	chr4_1:62184807-62184826	Msa0562360:intron	40.0%
!!	GCAGTTCATTCTGAAGTTCA+GGG	+	chr4_1:62184808-62184827	Msa0562360:intron	40.0%
!	CTGACAAGCATGACTTTTAC+AGG	+	chr4_1:62184843-62184862	Msa0562360:intron	40.0%
!	AGAGGAACACAGAAAGCATA+AGG	+	chr4_1:62184884-62184903	Msa0562360:CDS	40.0%
!	ACAGAAAGCATAAGGAAGAG+AGG	+	chr4_1:62184892-62184911	Msa0562360:CDS	40.0%
	AGATGTGGCATTCTCATCAA+TGG	-	chr4_1:62185036-62185055	None:intergenic	40.0%
!!	TATTCTGGGATTGTAGAGGA+GGG	-	chr4_1:62185059-62185078	None:intergenic	40.0%
!!	ATATTCTGGGATTGTAGAGG+AGG	-	chr4_1:62185060-62185079	None:intergenic	40.0%
!!	GTGATATTCTGGGATTGTAG+AGG	-	chr4_1:62185063-62185082	None:intergenic	40.0%
	CTTGCATGGAATGTTGTGAT+GGG	-	chr4_1:62185142-62185161	None:intergenic	40.0%
	AAAATGAATCCCTCCTTGCA+TGG	-	chr4_1:62185156-62185175	None:intergenic	40.0%
	ACTGTTCTGTGTAGTTACAC+TGG	-	chr4_1:62184015-62184034	None:intergenic	40.0%
	TTTCCCAGTTGAACATCCTA+TGG	+	chr4_1:62184100-62184119	Msa0562360:CDS	40.0%
	ATGACTGAAGATTCAGGCAT+TGG	-	chr4_1:62184158-62184177	None:intergenic	40.0%
	CTAGAAAGAGAAGCTGCAAA+GGG	-	chr4_1:62184572-62184591	None:intergenic	40.0%
	CAACAATTTACCGGTCATTC+TGG	+	chr4_1:62184694-62184713	Msa0562360:intron	40.0%
	TCAGTAGTTTCCAGAATGAC+CGG	-	chr4_1:62184707-62184726	None:intergenic	40.0%
!!	TGCAGTTCATTCTGAAGTTC+AGG	+	chr4_1:62184807-62184826	Msa0562360:intron	40.0%
!!	GCAGTTCATTCTGAAGTTCA+GGG	+	chr4_1:62184808-62184827	Msa0562360:intron	40.0%
!	CTGACAAGCATGACTTTTAC+AGG	+	chr4_1:62184843-62184862	Msa0562360:intron	40.0%
!	AGAGGAACACAGAAAGCATA+AGG	+	chr4_1:62184884-62184903	Msa0562360:CDS	40.0%
!	ACAGAAAGCATAAGGAAGAG+AGG	+	chr4_1:62184892-62184911	Msa0562360:CDS	40.0%
	AGATGTGGCATTCTCATCAA+TGG	-	chr4_1:62185036-62185055	None:intergenic	40.0%
!!	TATTCTGGGATTGTAGAGGA+GGG	-	chr4_1:62185059-62185078	None:intergenic	40.0%
!!	ATATTCTGGGATTGTAGAGG+AGG	-	chr4_1:62185060-62185079	None:intergenic	40.0%
!!	GTGATATTCTGGGATTGTAG+AGG	-	chr4_1:62185063-62185082	None:intergenic	40.0%
	CTTGCATGGAATGTTGTGAT+GGG	-	chr4_1:62185142-62185161	None:intergenic	40.0%
	AAAATGAATCCCTCCTTGCA+TGG	-	chr4_1:62185156-62185175	None:intergenic	40.0%
!	GCTAATGGGATTTTCATGCG+AGG	+	chr4_1:62183747-62183766	Msa0562360:five_prime_UTR	45.0%
	ACCACCATCATCATCATCAG+AGG	+	chr4_1:62184057-62184076	Msa0562360:CDS	45.0%
	CCACCATCATCATCATCAGA+GGG	+	chr4_1:62184058-62184077	Msa0562360:CDS	45.0%
!	CAACCCTCTGATGATGATGA+TGG	-	chr4_1:62184064-62184083	None:intergenic	45.0%
	GCTCCATAGGATGTTCAACT+GGG	-	chr4_1:62184106-62184125	None:intergenic	45.0%
!!	TCAGGCATTGGACATTTCAC+CGG	-	chr4_1:62184146-62184165	None:intergenic	45.0%
	ATGGCAAAGCATGCTTTGCA+TGG	+	chr4_1:62184226-62184245	Msa0562360:intron	45.0%
	TGTCACTAAACACTAGGCTC+AGG	+	chr4_1:62184361-62184380	Msa0562360:intron	45.0%
	GTCACTAAACACTAGGCTCA+GGG	+	chr4_1:62184362-62184381	Msa0562360:intron	45.0%
	GCTAGAAAGAGAAGCTGCAA+AGG	-	chr4_1:62184573-62184592	None:intergenic	45.0%
	TCCTGATGATCCATGAGTGA+GGG	-	chr4_1:62184998-62185017	None:intergenic	45.0%
	TTTCCAAGTGCTTCAGCAGT+TGG	+	chr4_1:62185086-62185105	Msa0562360:CDS	45.0%
	CCTTGCATGGAATGTTGTGA+TGG	-	chr4_1:62185143-62185162	None:intergenic	45.0%
	CCATCACAACATTCCATGCA+AGG	+	chr4_1:62185140-62185159	Msa0562360:three_prime_UTR	45.0%
	TCACAACATTCCATGCAAGG+AGG	+	chr4_1:62185143-62185162	Msa0562360:three_prime_UTR	45.0%
	CACAACATTCCATGCAAGGA+GGG	+	chr4_1:62185144-62185163	Msa0562360:three_prime_UTR	45.0%
	TCTTCATGCACCAATGCTTC+CGG	-	chr4_1:62185218-62185237	None:intergenic	45.0%
!	GCTAATGGGATTTTCATGCG+AGG	+	chr4_1:62183747-62183766	Msa0562360:five_prime_UTR	45.0%
	ACCACCATCATCATCATCAG+AGG	+	chr4_1:62184057-62184076	Msa0562360:CDS	45.0%
	CCACCATCATCATCATCAGA+GGG	+	chr4_1:62184058-62184077	Msa0562360:CDS	45.0%
!	CAACCCTCTGATGATGATGA+TGG	-	chr4_1:62184064-62184083	None:intergenic	45.0%
	GCTCCATAGGATGTTCAACT+GGG	-	chr4_1:62184106-62184125	None:intergenic	45.0%
!!	TCAGGCATTGGACATTTCAC+CGG	-	chr4_1:62184146-62184165	None:intergenic	45.0%
	ATGGCAAAGCATGCTTTGCA+TGG	+	chr4_1:62184226-62184245	Msa0562360:intron	45.0%
	TGTCACTAAACACTAGGCTC+AGG	+	chr4_1:62184361-62184380	Msa0562360:intron	45.0%
	GTCACTAAACACTAGGCTCA+GGG	+	chr4_1:62184362-62184381	Msa0562360:intron	45.0%
	GCTAGAAAGAGAAGCTGCAA+AGG	-	chr4_1:62184573-62184592	None:intergenic	45.0%
	TCCTGATGATCCATGAGTGA+GGG	-	chr4_1:62184998-62185017	None:intergenic	45.0%
	TTTCCAAGTGCTTCAGCAGT+TGG	+	chr4_1:62185086-62185105	Msa0562360:CDS	45.0%
	CCTTGCATGGAATGTTGTGA+TGG	-	chr4_1:62185143-62185162	None:intergenic	45.0%
	CCATCACAACATTCCATGCA+AGG	+	chr4_1:62185140-62185159	Msa0562360:three_prime_UTR	45.0%
	TCACAACATTCCATGCAAGG+AGG	+	chr4_1:62185143-62185162	Msa0562360:three_prime_UTR	45.0%
	CACAACATTCCATGCAAGGA+GGG	+	chr4_1:62185144-62185163	Msa0562360:three_prime_UTR	45.0%
	TCTTCATGCACCAATGCTTC+CGG	-	chr4_1:62185218-62185237	None:intergenic	45.0%
	AGAGAGAGAGAGAGAGAGAG+AGG	-	chr4_1:62183569-62183588	None:intergenic	50.0%
!!	CCCTCTGATGATGATGATGG+TGG	-	chr4_1:62184061-62184080	None:intergenic	50.0%
	GGCTCCATAGGATGTTCAAC+TGG	-	chr4_1:62184107-62184126	None:intergenic	50.0%
	TGAACATCCTATGGAGCCAC+CGG	+	chr4_1:62184109-62184128	Msa0562360:CDS	50.0%
	TTCACCGGACGATCTTCATC+CGG	-	chr4_1:62184131-62184150	None:intergenic	50.0%
	AGGAAGAGAGGTGAGATGTC+TGG	+	chr4_1:62184904-62184923	Msa0562360:CDS	50.0%
	GGAAGAGAGGTGAGATGTCT+GGG	+	chr4_1:62184905-62184924	Msa0562360:CDS	50.0%
	TGGACAAAGAACAGCTGGCA+TGG	+	chr4_1:62184930-62184949	Msa0562360:CDS	50.0%
	ACCCTCACTCATGGATCATC+AGG	+	chr4_1:62184994-62185013	Msa0562360:CDS	50.0%
	CTCCTGATGATCCATGAGTG+AGG	-	chr4_1:62184999-62185018	None:intergenic	50.0%
	GATTGTAGAGGAGGGAGATG+TGG	-	chr4_1:62185051-62185070	None:intergenic	50.0%
!	TGTCCAACTGCTGAAGCACT+TGG	-	chr4_1:62185092-62185111	None:intergenic	50.0%
!	TAGAGCAAGACCGGAAGCAT+TGG	+	chr4_1:62185205-62185224	Msa0562360:three_prime_UTR	50.0%
	AGAGAGAGAGAGAGAGAGAG+AGG	-	chr4_1:62183569-62183588	None:intergenic	50.0%
!!	CCCTCTGATGATGATGATGG+TGG	-	chr4_1:62184061-62184080	None:intergenic	50.0%
	GGCTCCATAGGATGTTCAAC+TGG	-	chr4_1:62184107-62184126	None:intergenic	50.0%
	TGAACATCCTATGGAGCCAC+CGG	+	chr4_1:62184109-62184128	Msa0562360:CDS	50.0%
	TTCACCGGACGATCTTCATC+CGG	-	chr4_1:62184131-62184150	None:intergenic	50.0%
	AGGAAGAGAGGTGAGATGTC+TGG	+	chr4_1:62184904-62184923	Msa0562360:CDS	50.0%
	GGAAGAGAGGTGAGATGTCT+GGG	+	chr4_1:62184905-62184924	Msa0562360:CDS	50.0%
	TGGACAAAGAACAGCTGGCA+TGG	+	chr4_1:62184930-62184949	Msa0562360:CDS	50.0%
	ACCCTCACTCATGGATCATC+AGG	+	chr4_1:62184994-62185013	Msa0562360:CDS	50.0%
	CTCCTGATGATCCATGAGTG+AGG	-	chr4_1:62184999-62185018	None:intergenic	50.0%
	GATTGTAGAGGAGGGAGATG+TGG	-	chr4_1:62185051-62185070	None:intergenic	50.0%
!	TGTCCAACTGCTGAAGCACT+TGG	-	chr4_1:62185092-62185111	None:intergenic	50.0%
!	TAGAGCAAGACCGGAAGCAT+TGG	+	chr4_1:62185205-62185224	Msa0562360:three_prime_UTR	50.0%
	TCTTCATCCGGTGGCTCCAT+AGG	-	chr4_1:62184119-62184138	None:intergenic	55.0%
	AGAGGTGAGATGTCTGGGTC+TGG	+	chr4_1:62184910-62184929	Msa0562360:CDS	55.0%
	GGGTCTGGACAAAGAACAGC+TGG	+	chr4_1:62184925-62184944	Msa0562360:CDS	55.0%
	TCTTCATCCGGTGGCTCCAT+AGG	-	chr4_1:62184119-62184138	None:intergenic	55.0%
	AGAGGTGAGATGTCTGGGTC+TGG	+	chr4_1:62184910-62184929	Msa0562360:CDS	55.0%
	GGGTCTGGACAAAGAACAGC+TGG	+	chr4_1:62184925-62184944	Msa0562360:CDS	55.0%
	GCCACCGGATGAAGATCGTC+CGG	+	chr4_1:62184124-62184143	Msa0562360:CDS	60.0%
	ACCGGACGATCTTCATCCGG+TGG	-	chr4_1:62184128-62184147	None:intergenic	60.0%
	CTTTCGCACTCCTCGAGCTG+GGG	-	chr4_1:62184965-62184984	None:intergenic	60.0%
	GCTTTCGCACTCCTCGAGCT+GGG	-	chr4_1:62184966-62184985	None:intergenic	60.0%
!	CAGCTCGAGGAGTGCGAAAG+CGG	+	chr4_1:62184965-62184984	Msa0562360:CDS	60.0%
	CGGCATCACACCCTCACTCA+TGG	+	chr4_1:62184985-62185004	Msa0562360:CDS	60.0%
	GCCACCGGATGAAGATCGTC+CGG	+	chr4_1:62184124-62184143	Msa0562360:CDS	60.0%
	ACCGGACGATCTTCATCCGG+TGG	-	chr4_1:62184128-62184147	None:intergenic	60.0%
	CTTTCGCACTCCTCGAGCTG+GGG	-	chr4_1:62184965-62184984	None:intergenic	60.0%
	GCTTTCGCACTCCTCGAGCT+GGG	-	chr4_1:62184966-62184985	None:intergenic	60.0%
!	CAGCTCGAGGAGTGCGAAAG+CGG	+	chr4_1:62184965-62184984	Msa0562360:CDS	60.0%
	CGGCATCACACCCTCACTCA+TGG	+	chr4_1:62184985-62185004	Msa0562360:CDS	60.0%
	GACACAGATGCCCCAGCTCG+AGG	+	chr4_1:62184952-62184971	Msa0562360:CDS	65.0%
	CGCTTTCGCACTCCTCGAGC+TGG	-	chr4_1:62184967-62184986	None:intergenic	65.0%
	GACACAGATGCCCCAGCTCG+AGG	+	chr4_1:62184952-62184971	Msa0562360:CDS	65.0%
	CGCTTTCGCACTCCTCGAGC+TGG	-	chr4_1:62184967-62184986	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	62183563	62185471	62183563	ID=Msa0562360;Name=Msa0562360
chr4_1	mRNA	62183563	62185471	62183563	ID=Msa0562360-mRNA-1;Parent=Msa0562360;Name=Msa0562360-mRNA-1;_AED=0.16;_eAED=0.16;_QI=359\|1\|1\|1\|0.5\|0.33\|3\|346\|133
chr4_1	exon	62183563	62183855	62183563	ID=Msa0562360-mRNA-1:exon:19651;Parent=Msa0562360-mRNA-1
chr4_1	exon	62183975	62184181	62183975	ID=Msa0562360-mRNA-1:exon:19652;Parent=Msa0562360-mRNA-1
chr4_1	exon	62184865	62185471	62184865	ID=Msa0562360-mRNA-1:exon:19653;Parent=Msa0562360-mRNA-1
chr4_1	five_prime_UTR	62183563	62183855	62183563	ID=Msa0562360-mRNA-1:five_prime_utr;Parent=Msa0562360-mRNA-1
chr4_1	five_prime_UTR	62183975	62184040	62183975	ID=Msa0562360-mRNA-1:five_prime_utr;Parent=Msa0562360-mRNA-1
chr4_1	CDS	62184041	62184181	62184041	ID=Msa0562360-mRNA-1:cds;Parent=Msa0562360-mRNA-1
chr4_1	CDS	62184865	62185125	62184865	ID=Msa0562360-mRNA-1:cds;Parent=Msa0562360-mRNA-1
chr4_1	three_prime_UTR	62185126	62185471	62185126	ID=Msa0562360-mRNA-1:three_prime_utr;Parent=Msa0562360-mRNA-1

Gene Sequence

>Msa0562360

ATGGAAGTGTATCATCACCACCATCATCATCATCAGAGGGTTGATAACAACACAGATTTTTTCCCAGTTGAACATCCTATGGAGCCACCGGATGAAGATCGTCCGGTGAAATGTCCAATGCCTGAATCTTCAGTCATTAGTGATGAAAGGATGCATGAAAAGAGGAACACAGAAAGCATAAGGAAGAGAGGTGAGATGTCTGGGTCTGGACAAAGAACAGCTGGCATGGACACAGATGCCCCAGCTCGAGGAGTGCGAAAGCGGCATCACACCCTCACTCATGGATCATCAGGAGACATTGTGATGACTCCATTGATGAGAATGCCACATCTCCCTCCTCTACAATCCCAGAATATCACTATTTTCCAAGTGCTTCAGCAGTTGGACAAGTTTGAGTCTTAA

Protein sequence

>Msa0562360

MEVYHHHHHHHQRVDNNTDFFPVEHPMEPPDEDRPVKCPMPESSVISDERMHEKRNTESIRKRGEMSGSGQRTAGMDTDAPARGVRKRHHTLTHGSSGDIVMTPLMRMPHLPPLQSQNITIFQVLQQLDKFES*