AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420430 MtrunA17_Chr3g0119541 96.133 362 14 0 1 362 1 362 0.0 684
Msa0420430 MtrunA17_Chr5g0439251 73.684 342 90 0 20 361 19 360 0.0 529
Msa0420430 MtrunA17_Chr1g0177171 66.055 327 111 0 22 348 34 360 5.88e-158 452
Msa0420430 MtrunA17_Chr4g0043851 44.875 361 189 5 3 362 11 362 3.08e-101 304
Msa0420430 MtrunA17_Chr1g0189111 48.788 330 165 4 19 347 24 350 3.27e-101 305
Msa0420430 MtrunA17_Chr4g0026321 47.164 335 165 5 22 353 25 350 7.89e-101 303
Msa0420430 MtrunA17_Chr2g0321511 43.750 336 184 3 9 343 12 343 2.73e-95 289
Msa0420430 MtrunA17_Chr4g0003281 44.986 349 186 4 4 351 20 363 9.95e-95 288
Msa0420430 MtrunA17_Chr8g0389741 42.121 330 190 1 20 349 22 350 1.44e-93 288
Msa0420430 MtrunA17_Chr2g0285901 45.614 342 178 6 7 343 1 339 2.02e-93 284
Msa0420430 MtrunA17_Chr6g0487261 41.429 350 203 2 1 349 1 349 9.44e-92 283
Msa0420430 MtrunA17_Chr7g0234821 43.925 321 175 4 27 343 27 346 1.33e-91 282
Msa0420430 MtrunA17_Chr1g0146831 43.939 330 178 4 15 342 20 344 6.25e-91 277
Msa0420430 MtrunA17_Chr4g0034901 42.690 342 189 4 4 343 10 346 1.59e-89 276
Msa0420430 MtrunA17_Chr1g0161011 41.429 350 200 3 4 349 1 349 1.88e-89 277
Msa0420430 MtrunA17_Chr8g0339191 40.698 344 199 4 4 343 7 349 8.96e-89 275
Msa0420430 MtrunA17_Chr3g0110371 41.926 353 195 4 1 349 3 349 6.70e-88 273
Msa0420430 MtrunA17_Chr4g0046311 39.306 346 203 3 7 346 4 348 4.58e-87 270
Msa0420430 MtrunA17_Chr3g0144531 43.252 326 182 3 20 343 21 345 6.09e-87 270
Msa0420430 MtrunA17_Chr4g0064021 42.683 328 186 2 19 345 19 345 2.68e-85 263
Msa0420430 MtrunA17_Chr4g0075031 40.169 356 194 4 4 341 8 362 2.76e-85 267
Msa0420430 MtrunA17_Chr1g0155001 42.812 320 180 3 26 343 24 342 3.33e-85 264
Msa0420430 MtrunA17_Chr5g0434591 41.667 336 187 3 1 333 3 332 2.90e-83 261
Msa0420430 MtrunA17_Chr3g0121271 38.720 328 196 3 23 346 23 349 1.06e-81 257
Msa0420430 MtrunA17_Chr7g0223961 42.991 321 174 6 24 342 21 334 7.04e-81 254
Msa0420430 MtrunA17_Chr4g0043511 43.824 340 180 8 26 362 62 393 1.26e-80 256
Msa0420430 MtrunA17_Chr4g0039071 42.679 321 177 4 23 343 22 335 5.24e-80 249
Msa0420430 MtrunA17_Chr8g0378621 38.261 345 202 3 4 345 11 347 2.46e-78 249
Msa0420430 MtrunA17_Chr4g0038981 42.679 321 170 8 25 345 22 328 5.39e-78 243
Msa0420430 MtrunA17_Chr4g0038941 43.519 324 163 8 25 345 51 357 1.21e-76 240
Msa0420430 MtrunA17_Chr4g0039011 41.742 333 181 7 25 357 41 360 1.63e-76 240
Msa0420430 MtrunA17_Chr4g0038971 41.543 337 182 9 10 345 6 328 3.22e-75 235
Msa0420430 MtrunA17_Chr4g0038961 42.547 322 169 9 25 345 22 328 4.08e-75 235
Msa0420430 MtrunA17_Chr2g0294591 39.450 327 185 8 25 349 29 344 8.82e-71 225
Msa0420430 MtrunA17_Chr2g0294601 40.663 332 180 10 25 352 58 376 2.45e-68 220
Msa0420430 MtrunA17_Chr4g0039021 40.845 284 159 4 52 335 7 281 6.04e-67 213
Msa0420430 MtrunA17_Chr1g0174261 41.724 290 160 5 55 343 1 282 7.32e-66 212
Msa0420430 MtrunA17_Chr7g0250301 37.342 316 189 6 26 341 8 314 1.56e-65 210
Msa0420430 MtrunA17_Chr4g0076581 36.443 343 203 11 6 341 14 348 3.99e-57 193
Msa0420430 MtrunA17_Chr2g0290821 37.349 332 194 9 20 343 22 347 1.04e-55 189
Msa0420430 MtrunA17_Chr4g0062771 35.897 351 207 11 2 343 9 350 6.11e-54 185
Msa0420430 MtrunA17_Chr7g0250321 37.500 296 171 7 1 292 1 286 7.22e-53 176
Msa0420430 MtrunA17_Chr8g0383311 34.441 331 203 10 26 349 43 366 3.01e-52 180
Msa0420430 MtrunA17_Chr1g0148391 36.086 327 191 11 26 343 26 343 7.31e-51 176
Msa0420430 MtrunA17_Chr4g0069801 34.637 358 209 13 4 352 11 352 1.23e-50 176
Msa0420430 MtrunA17_Chr7g0253091 34.097 349 205 13 1 336 1 337 6.03e-50 174
Msa0420430 MtrunA17_Chr3g0138741 35.736 333 198 11 19 343 24 348 1.16e-49 173
Msa0420430 MtrunA17_Chr6g0461601 36.778 329 179 14 26 338 26 341 3.21e-48 169
Msa0420430 MtrunA17_Chr3g0129341 32.386 352 217 15 9 349 14 355 2.92e-45 161
Msa0420430 MtrunA17_Chr5g0436361 32.131 305 195 8 42 342 53 349 1.02e-43 155
Msa0420430 MtrunA17_Chr2g0306311 32.768 354 194 12 26 343 30 375 3.31e-43 156
Msa0420430 MtrunA17_Chr3g0105981 33.846 325 201 9 25 343 26 342 5.98e-43 154
Msa0420430 MtrunA17_Chr2g0294581 38.168 131 79 1 25 153 75 205 1.67e-22 95.9
Msa0420430 MtrunA17_Chr2g0294581 39.796 98 51 5 243 339 187 277 1.45e-12 67.4
Msa0420430 MtrunA17_Chr4g0018771 45.977 87 42 2 257 343 94 175 1.62e-16 77.8
Msa0420430 MtrunA17_Chr4g0018771 43.548 62 35 0 23 84 23 84 2.48e-11 62.8
Msa0420430 MtrunA17_Chr4g0018861 45.977 87 42 2 257 343 92 173 4.92e-16 76.3
Msa0420430 MtrunA17_Chr4g0018861 44.262 61 34 0 24 84 20 80 2.98e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420430 AT2G05790.1 72.754 334 91 0 22 355 21 354 0.0 530
Msa0420430 AT5G55180.2 68.111 323 103 0 21 343 22 344 2.58e-158 452
Msa0420430 AT5G55180.1 68.111 323 103 0 21 343 22 344 2.86e-158 452
Msa0420430 AT4G26830.1 64.201 338 119 2 9 346 9 344 2.30e-148 427
Msa0420430 AT4G26830.2 65.231 325 112 1 22 346 25 348 2.54e-148 427
Msa0420430 AT1G32860.1 47.853 326 165 4 25 347 28 351 3.05e-103 311
Msa0420430 AT2G27500.2 46.687 332 170 3 23 353 26 351 7.33e-100 300
Msa0420430 AT2G27500.1 46.687 332 170 3 23 353 26 351 1.18e-99 300
Msa0420430 AT4G18340.2 45.245 347 181 4 8 347 10 354 2.82e-98 296
Msa0420430 AT4G18340.1 45.376 346 180 4 8 346 10 353 5.17e-98 296
Msa0420430 AT1G30080.2 45.115 348 182 4 3 343 7 352 6.69e-98 296
Msa0420430 AT1G30080.1 47.352 321 166 3 24 343 34 352 1.09e-97 296
Msa0420430 AT5G24318.4 45.794 321 167 4 25 343 29 344 1.37e-96 292
Msa0420430 AT5G42100.1 47.147 333 168 6 15 343 18 346 2.18e-96 293
Msa0420430 AT5G42100.2 47.147 333 168 6 15 343 18 346 2.34e-96 293
Msa0420430 AT5G24318.2 44.543 339 181 4 25 361 29 362 1.15e-95 292
Msa0420430 AT3G15800.1 47.561 328 167 4 27 352 44 368 2.37e-95 290
Msa0420430 AT5G24318.1 44.543 339 181 4 25 361 29 362 2.77e-95 291
Msa0420430 AT2G16230.1 44.720 322 176 2 26 346 25 345 8.54e-92 284
Msa0420430 AT5G42720.1 44.638 345 182 4 4 346 10 347 1.15e-91 281
Msa0420430 AT2G26600.1 43.413 334 184 3 16 345 21 353 3.68e-90 276
Msa0420430 AT5G56590.1 41.411 326 188 3 23 346 23 347 2.42e-87 273
Msa0420430 AT4G29360.2 42.857 343 193 2 6 346 15 356 1.99e-86 271
Msa0420430 AT4G14080.1 41.088 331 191 3 19 346 35 364 4.49e-86 268
Msa0420430 AT4G34480.2 44.514 319 175 2 26 343 26 343 6.66e-86 264
Msa0420430 AT4G29360.1 41.159 345 202 1 2 346 3 346 2.15e-85 268
Msa0420430 AT3G07320.1 40.841 333 190 5 27 355 26 355 1.14e-84 264
Msa0420430 AT2G01630.2 40.979 327 189 2 26 349 23 348 2.03e-84 261
Msa0420430 AT2G01630.3 40.979 327 189 2 26 349 23 348 4.38e-84 262
Msa0420430 AT4G34480.1 44.514 319 175 2 26 343 26 343 5.11e-84 264
Msa0420430 AT3G23770.1 40.176 341 195 4 19 353 30 367 5.48e-84 263
Msa0420430 AT2G01630.1 40.979 327 189 2 26 349 23 348 4.44e-83 261
Msa0420430 AT1G66250.1 40.597 335 194 3 18 349 24 356 5.55e-83 261
Msa0420430 AT1G11820.1 40.125 319 187 3 26 341 44 361 6.04e-81 252
Msa0420430 AT3G13560.4 39.939 328 191 4 19 341 17 343 4.83e-80 254
Msa0420430 AT3G13560.1 39.939 328 191 4 19 341 17 343 4.83e-80 254
Msa0420430 AT3G13560.2 39.939 328 191 4 19 341 17 343 4.83e-80 254
Msa0420430 AT3G13560.5 39.939 328 191 4 19 341 17 343 4.83e-80 254
Msa0420430 AT3G13560.3 39.939 328 191 4 19 341 17 343 4.83e-80 254
Msa0420430 AT1G11820.3 40.125 319 187 3 26 341 44 361 8.64e-80 252
Msa0420430 AT1G11820.2 40.125 319 187 3 26 341 44 361 1.87e-79 252
Msa0420430 AT2G27500.3 44.604 278 147 3 77 353 2 273 1.48e-78 244
Msa0420430 AT4G16260.1 39.710 345 196 7 4 348 5 337 4.59e-76 238
Msa0420430 AT3G57270.1 41.231 325 180 7 23 345 24 339 4.91e-73 230
Msa0420430 AT3G46570.1 42.000 350 182 12 1 343 7 342 9.83e-72 228
Msa0420430 AT4G16260.2 40.190 316 180 6 33 348 2 308 5.19e-71 224
Msa0420430 AT3G55430.1 38.690 336 187 12 14 343 19 341 5.44e-70 226
Msa0420430 AT2G26600.2 42.913 254 143 2 93 345 7 259 2.76e-69 219
Msa0420430 AT3G61810.1 37.386 329 187 5 26 346 55 372 1.22e-68 220
Msa0420430 AT1G77780.1 39.650 343 192 9 4 343 2 332 4.85e-66 213
Msa0420430 AT3G57260.1 37.427 342 197 8 4 345 14 338 3.12e-65 210
Msa0420430 AT3G57260.2 37.427 342 197 8 4 345 30 354 6.52e-65 210
Msa0420430 AT5G24318.3 44.934 227 121 1 135 361 1 223 3.31e-64 207
Msa0420430 AT2G39640.1 35.756 344 207 10 3 343 6 338 2.11e-60 203
Msa0420430 AT1G77790.1 36.443 343 208 7 3 343 7 341 1.93e-59 196
Msa0420430 AT3G57240.1 36.875 320 188 8 26 345 35 340 8.64e-59 194
Msa0420430 AT5G20390.1 36.364 341 205 9 3 341 11 341 1.58e-58 193
Msa0420430 AT4G34480.3 47.186 231 120 2 114 343 3 232 2.79e-58 194
Msa0420430 AT5G20330.1 38.838 327 189 8 19 343 27 344 5.98e-58 192
Msa0420430 AT5G20340.1 37.764 331 193 9 16 343 33 353 7.57e-56 186
Msa0420430 AT3G24330.1 33.799 358 218 12 2 349 16 364 3.58e-54 186
Msa0420430 AT1G33220.1 36.012 336 196 7 9 343 17 334 6.16e-53 178
Msa0420430 AT5G18220.1 33.898 354 214 11 5 351 13 353 5.81e-51 177
Msa0420430 AT2G19440.2 35.088 342 198 14 19 349 16 344 1.66e-50 176
Msa0420430 AT2G19440.1 35.088 342 198 14 19 349 16 344 1.66e-50 176
Msa0420430 AT4G17180.1 34.111 343 205 11 24 357 23 353 1.77e-50 176
Msa0420430 AT3G55780.1 29.375 320 216 7 42 356 51 365 9.18e-50 171
Msa0420430 AT1G64760.1 34.706 340 202 14 24 353 23 352 3.57e-49 172
Msa0420430 AT1G64760.2 34.706 340 202 14 24 353 23 352 3.57e-49 172
Msa0420430 AT5G58090.1 36.111 324 185 13 24 336 20 332 1.84e-48 170
Msa0420430 AT5G64790.1 34.181 354 215 11 4 349 8 351 7.99e-48 169
Msa0420430 AT4G31140.1 33.718 347 213 13 19 356 20 358 4.00e-47 167
Msa0420430 AT3G04010.1 32.493 357 221 12 6 353 15 360 7.54e-46 164
Msa0420430 AT5G20870.1 33.618 351 207 14 2 336 7 347 2.30e-45 162
Msa0420430 AT5G20560.1 33.433 335 210 9 4 335 12 336 2.15e-44 156
Msa0420430 AT5G58480.1 33.435 329 203 9 25 345 25 345 7.04e-43 155

Find 119 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACTTCGGAGAGGAATTT+TGG 0.142219 3_2:+68903182 Msa0420430:CDS
GATGGCTTCGATTTGGGTTT+TGG 0.150299 3_2:-68902532 None:intergenic
ATATCTGCAAAATGAAATTT+AGG 0.220474 3_2:-68903446 None:intergenic
CATGGCGGGGATGAGGTATT+TGG 0.229684 3_2:-68902595 None:intergenic
TCGAGGTTGAGAATATAATT+TGG 0.241683 3_2:+68903403 Msa0420430:three_prime_UTR
GTATCACTTAGTATGTTAAT+TGG 0.258538 3_2:+68903492 Msa0420430:three_prime_UTR
TCCTCTTATCCGTCTTCAAC+CGG 0.271730 3_2:+68902702 Msa0420430:CDS
TTATGATCAGTTCATTATCT+TGG 0.322108 3_2:+68903369 Msa0420430:three_prime_UTR
AGATTCGCATTCGGTCTTAA+AGG 0.324788 3_2:-68903113 None:intergenic
CGACGGCGATGGCTTCGATT+TGG 0.328793 3_2:-68902539 None:intergenic
CGAGGTTGAGAATATAATTT+GGG 0.329120 3_2:+68903404 Msa0420430:three_prime_UTR
TTTAGCATTGGTTTAATTAC+GGG 0.335880 3_2:-68902750 None:intergenic
TCATAAACCTTCTTCATATC+AGG 0.341845 3_2:-68903215 None:intergenic
GACGGCGATGGCTTCGATTT+GGG 0.346374 3_2:-68902538 None:intergenic
TATGATCAGTTCATTATCTT+GGG 0.350524 3_2:+68903370 Msa0420430:three_prime_UTR
CTAATATTTGTAAGATTTGT+TGG 0.352056 3_2:+68903515 Msa0420430:three_prime_UTR
TTGTATCACATTAATTCATA+TGG 0.352912 3_2:-68903652 None:intergenic
GTTTAGCATTGGTTTAATTA+CGG 0.353752 3_2:-68902751 None:intergenic
GATTCGCATTCGGTCTTAAA+GGG 0.355739 3_2:-68903112 None:intergenic
TAATATTTGTAAGATTTGTT+GGG 0.378499 3_2:+68903516 Msa0420430:three_prime_UTR
CTCTCACTTCCACTACTTGC+AGG 0.379057 3_2:+68901988 Msa0420430:CDS
CGCTTTGTTTCGTGAAAACC+CGG 0.382673 3_2:+68902863 Msa0420430:CDS
AGTTCTGCTCAGCCGCTTCC+CGG 0.386123 3_2:-68903287 None:intergenic
GTTTACGGTTACTTTGATTC+CGG 0.388759 3_2:-68902424 None:intergenic
TTCAACCCCGCCACAGTAAA+CGG 0.391365 3_2:-68903242 None:intergenic
TGAAACGTCGTCGTATTTGA+TGG 0.393298 3_2:+68902782 Msa0420430:CDS
TACCGTGACGTTTCGGCGCC+GGG 0.395980 3_2:+68903269 Msa0420430:CDS
GACGTTTCGGCGCCGGGAAG+CGG 0.399867 3_2:+68903275 Msa0420430:CDS
TTGTTCGTTTGGGAGGTTTA+CGG 0.405496 3_2:-68902439 None:intergenic
TATAGAAGAGTTGTTCGTTT+GGG 0.414891 3_2:-68902449 None:intergenic
TTTGATTCCGGATCCGGATA+AGG 0.415353 3_2:-68902412 None:intergenic
GAAGAGTTACCGTGACGTTT+CGG 0.420176 3_2:+68903262 Msa0420430:CDS
AATTCCGTTGGAGTGAACTA+TGG 0.423451 3_2:+68902282 Msa0420430:CDS
GATGTTCCGTTTACTGTGGC+GGG 0.429934 3_2:+68903236 Msa0420430:CDS
GGTTACTTTGATTCCGGATC+CGG 0.435065 3_2:-68902418 None:intergenic
TAGACGATGCATGGTGGGAT+AGG 0.436707 3_2:-68901935 None:intergenic
GGTAATGTGGATCCGGGTAA+CGG 0.452916 3_2:+68902885 Msa0420430:CDS
TCAAATACGACGACGTTTCA+CGG 0.456148 3_2:-68902779 None:intergenic
ATTACGGGTTCTATGAGATC+GGG 0.459527 3_2:-68902735 None:intergenic
TAGTGGAAGTGAGAGGTATG+AGG 0.464913 3_2:-68901980 None:intergenic
CCAAAATTCCTCTCCGAAGT+AGG 0.466477 3_2:-68903182 None:intergenic
CCCGGTTGAAGACGGATAAG+AGG 0.467032 3_2:-68902703 None:intergenic
GTAATGTGGATCCGGGTAAC+GGG 0.469921 3_2:+68902886 Msa0420430:CDS
CTAAAATCCTTATCCGGATC+CGG 0.470230 3_2:+68902405 Msa0420430:CDS
AAACCCGGGTAATGTGGATC+CGG 0.471625 3_2:+68902878 Msa0420430:CDS
GTGAGAGGTATGAGGAAATG+AGG 0.472680 3_2:-68901972 None:intergenic
TGTACGCAGCAGCGTTCTGT+GGG 0.477785 3_2:-68903049 None:intergenic
TCATTATCTTGGGTGTGTCT+AGG 0.480062 3_2:+68903380 Msa0420430:three_prime_UTR
AGAGTGGTTGTGAGTGAAAC+GGG 0.485100 3_2:+68902987 Msa0420430:CDS
GTATAGAAGAGTTGTTCGTT+TGG 0.487771 3_2:-68902450 None:intergenic
TTGTACGCAGCAGCGTTCTG+TGG 0.488748 3_2:-68903050 None:intergenic
AATTACGGGTTCTATGAGAT+CGG 0.488872 3_2:-68902736 None:intergenic
TTACCGTGACGTTTCGGCGC+CGG 0.490715 3_2:+68903268 Msa0420430:CDS
TTTAATGAAAATGGGAAAGT+GGG 0.491545 3_2:+68903158 Msa0420430:CDS
TAAAATCACAAGGAATCGAC+CGG 0.501310 3_2:+68902352 Msa0420430:CDS
GCCGTTCTAAAATCCTTATC+CGG 0.508050 3_2:+68902399 Msa0420430:CDS
GTTACAGATGGTAATTCCGT+TGG 0.508551 3_2:+68902270 Msa0420430:intron
TAGAGTGGTTGTGAGTGAAA+CGG 0.511502 3_2:+68902986 Msa0420430:CDS
TGGGAAAGTGGGACCTACTT+CGG 0.513228 3_2:+68903169 Msa0420430:CDS
AGAAGAGTTGTTCGTTTGGG+AGG 0.520427 3_2:-68902446 None:intergenic
TATATAGCTAAGAGATCAGT+AGG 0.522243 3_2:-68903629 None:intergenic
AATATTTGTAAGATTTGTTG+GGG 0.526138 3_2:+68903517 Msa0420430:three_prime_UTR
CCAATCGCTTTATCTGCTCT+CGG 0.531316 3_2:+68902678 Msa0420430:CDS
AGACGATGCATGGTGGGATA+GGG 0.531744 3_2:-68901934 None:intergenic
CTACTTTGAATGCTGAGGGT+AGG 0.540473 3_2:-68902320 None:intergenic
TTACCCGGATCCACATTACC+CGG 0.542092 3_2:-68902882 None:intergenic
AACCCGGGTAATGTGGATCC+GGG 0.543293 3_2:+68902879 Msa0420430:CDS
GAGGTATGAGGAAATGAGGA+TGG 0.545090 3_2:-68901968 None:intergenic
CGTGCAACTTTCACTACACA+TGG 0.548989 3_2:-68903569 None:intergenic
CTTAACTACTTTGAATGCTG+AGG 0.551196 3_2:-68902325 None:intergenic
TGATGTTCCGTTTACTGTGG+CGG 0.551618 3_2:+68903235 Msa0420430:CDS
AACTTTCCTACGCCCTCACA+TGG 0.552284 3_2:+68902481 Msa0420430:CDS
TCTTGGGTGTGTCTAGGTCG+AGG 0.552824 3_2:+68903386 Msa0420430:three_prime_UTR
AACGTCAGCGTTTGACTCGT+AGG 0.557317 3_2:-68902826 None:intergenic
TCGTGAAAACCCGGGTAATG+TGG 0.558115 3_2:+68902872 Msa0420430:CDS
TTGGAGCCATGTGAGGGCGT+AGG 0.561253 3_2:-68902487 None:intergenic
TTGAATGACCCGGTTGAAGA+CGG 0.562405 3_2:-68902711 None:intergenic
TAAACGGTCAGATTCGCATT+CGG 0.565144 3_2:-68903122 None:intergenic
CCGAGAGCAGATAAAGCGAT+TGG 0.569316 3_2:-68902678 None:intergenic
CCTCTTATCCGTCTTCAACC+GGG 0.572031 3_2:+68902703 Msa0420430:CDS
TCACGGAGGAAGTTTAGCAT+TGG 0.572211 3_2:-68902762 None:intergenic
TTAACTACTTTGAATGCTGA+GGG 0.578124 3_2:-68902324 None:intergenic
TTCCCGGCGCCGAAACGTCA+CGG 0.582794 3_2:-68903271 None:intergenic
GACTTCGTTACCGACGGCGA+TGG 0.588943 3_2:-68902550 None:intergenic
ATGAGTAGACGATGCATGGT+GGG 0.593641 3_2:-68901940 None:intergenic
GAAGCAATACCTGCAAGTAG+TGG 0.596051 3_2:-68901997 None:intergenic
GGCGGGGATGAGGTATTTGG+TGG 0.601341 3_2:-68902592 None:intergenic
GAAACGGGTTGGCCTTCGAA+AGG 0.613978 3_2:+68903002 Msa0420430:CDS
TCAATACAACGACGTTAGAG+TGG 0.620974 3_2:+68902971 Msa0420430:CDS
AGAAGATTCTGAACAACGGT+GGG 0.622512 3_2:+68903087 Msa0420430:CDS
CGGTGTCGTAGAGTTTGACC+CGG 0.627592 3_2:-68902371 None:intergenic
GACGAAGACTTCGTTACCGA+CGG 0.628446 3_2:-68902556 None:intergenic
ATTCGCATTCGGTCTTAAAG+GGG 0.628701 3_2:-68903111 None:intergenic
TTATGATGTTCCGTTTACTG+TGG 0.629594 3_2:+68903232 Msa0420430:CDS
CAAATCGAAGCCATCGCCGT+CGG 0.630433 3_2:+68902540 Msa0420430:CDS
GAGATCGGGTTTGAATGACC+CGG 0.632773 3_2:-68902721 None:intergenic
CAAACTCTACGACACCGACC+CGG 0.633891 3_2:+68902377 Msa0420430:CDS
TCATCACTATCACCTTTCGA+AGG 0.639827 3_2:-68903014 None:intergenic
GAAAGGTGATAGTGATGAGG+TGG 0.640804 3_2:+68903019 Msa0420430:CDS
AAGAATGAGTAGACGATGCA+TGG 0.642954 3_2:-68901944 None:intergenic
TACCCGGATCCACATTACCC+GGG 0.647522 3_2:-68902881 None:intergenic
TTCGAAAGGTGATAGTGATG+AGG 0.659057 3_2:+68903016 Msa0420430:CDS
CAGAACGCTGCTGCGTACAA+CGG 0.661248 3_2:+68903053 Msa0420430:CDS
CTGCAAGTAGTGGAAGTGAG+AGG 0.663993 3_2:-68901987 None:intergenic
AAGAAGATTCTGAACAACGG+TGG 0.664425 3_2:+68903086 Msa0420430:CDS
AAAATCACAAGGAATCGACC+GGG 0.666777 3_2:+68902353 Msa0420430:CDS
GTTAAGAAGATTCTGAACAA+CGG 0.668546 3_2:+68903083 Msa0420430:CDS
AATGAGTAGACGATGCATGG+TGG 0.672661 3_2:-68901941 None:intergenic
ATGTTCCGTTTACTGTGGCG+GGG 0.675695 3_2:+68903237 Msa0420430:CDS
GCGACCATAGTTCACTCCAA+CGG 0.677772 3_2:-68902286 None:intergenic
GTTAAGCTTCTAAAATCACA+AGG 0.686975 3_2:+68902342 Msa0420430:CDS
TGGTTGTGAGTGAAACGGGT+TGG 0.699770 3_2:+68902991 Msa0420430:CDS
GCTTTGTTTCGTGAAAACCC+GGG 0.717428 3_2:+68902864 Msa0420430:CDS
AAGTGGGACCTACTTCGGAG+AGG 0.718988 3_2:+68903174 Msa0420430:CDS
AAAGGTGATAGTGATGAGGT+GGG 0.725483 3_2:+68903020 Msa0420430:CDS
GCAACTTTCACTACACATGG+AGG 0.733978 3_2:-68903566 None:intergenic
GTACGCAGCAGCGTTCTGTG+GGG 0.734648 3_2:-68903048 None:intergenic
ATATTTGTAAGATTTGTTGG+GGG 0.748060 3_2:+68903518 Msa0420430:three_prime_UTR
AATACGACGACGTTTCACGG+AGG 0.753555 3_2:-68902776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATGTAAACAAAAAAGA+TGG - chr3_2:68902038-68902057 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG + chr3_2:68903470-68903489 Msa0420430:three_prime_UTR 15.0%
!!! TAATATTTGTAAGATTTGTT+GGG + chr3_2:68903516-68903535 Msa0420430:three_prime_UTR 15.0%
!! AATAATGTAAACAAAAAAGA+TGG - chr3_2:68902038-68902057 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG + chr3_2:68903470-68903489 Msa0420430:three_prime_UTR 15.0%
!!! TAATATTTGTAAGATTTGTT+GGG + chr3_2:68903516-68903535 Msa0420430:three_prime_UTR 15.0%
!!! TTATTAATTGTTGTTACAGA+TGG + chr3_2:68902258-68902277 Msa0420430:intron 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG - chr3_2:68903141-68903160 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG - chr3_2:68903449-68903468 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG + chr3_2:68903469-68903488 Msa0420430:three_prime_UTR 20.0%
!! CTAATATTTGTAAGATTTGT+TGG + chr3_2:68903515-68903534 Msa0420430:three_prime_UTR 20.0%
!!! AATATTTGTAAGATTTGTTG+GGG + chr3_2:68903517-68903536 Msa0420430:three_prime_UTR 20.0%
!! TTGTATCACATTAATTCATA+TGG - chr3_2:68903655-68903674 None:intergenic 20.0%
!!! TTATTAATTGTTGTTACAGA+TGG + chr3_2:68902258-68902277 Msa0420430:intron 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG - chr3_2:68903141-68903160 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG - chr3_2:68903449-68903468 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG + chr3_2:68903469-68903488 Msa0420430:three_prime_UTR 20.0%
!! CTAATATTTGTAAGATTTGT+TGG + chr3_2:68903515-68903534 Msa0420430:three_prime_UTR 20.0%
!!! AATATTTGTAAGATTTGTTG+GGG + chr3_2:68903517-68903536 Msa0420430:three_prime_UTR 20.0%
!! TTGTATCACATTAATTCATA+TGG - chr3_2:68903655-68903674 None:intergenic 20.0%
! TAATATAAACATGTGTGTGT+AGG + chr3_2:68902091-68902110 Msa0420430:intron 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG - chr3_2:68902753-68902772 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG - chr3_2:68902754-68902773 None:intergenic 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG + chr3_2:68903149-68903168 Msa0420430:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG + chr3_2:68903150-68903169 Msa0420430:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG + chr3_2:68903157-68903176 Msa0420430:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG + chr3_2:68903158-68903177 Msa0420430:CDS 25.0%
! TTATGATCAGTTCATTATCT+TGG + chr3_2:68903369-68903388 Msa0420430:three_prime_UTR 25.0%
! TATGATCAGTTCATTATCTT+GGG + chr3_2:68903370-68903389 Msa0420430:three_prime_UTR 25.0%
!! TTCATTTTGCAGATATGTAT+TGG + chr3_2:68903453-68903472 Msa0420430:three_prime_UTR 25.0%
!! TCATTTTGCAGATATGTATT+GGG + chr3_2:68903454-68903473 Msa0420430:three_prime_UTR 25.0%
! GTATCACTTAGTATGTTAAT+TGG + chr3_2:68903492-68903511 Msa0420430:three_prime_UTR 25.0%
!!! ATATTTGTAAGATTTGTTGG+GGG + chr3_2:68903518-68903537 Msa0420430:three_prime_UTR 25.0%
! TAATATAAACATGTGTGTGT+AGG + chr3_2:68902091-68902110 Msa0420430:intron 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG - chr3_2:68902753-68902772 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG - chr3_2:68902754-68902773 None:intergenic 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG + chr3_2:68903149-68903168 Msa0420430:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG + chr3_2:68903150-68903169 Msa0420430:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG + chr3_2:68903157-68903176 Msa0420430:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG + chr3_2:68903158-68903177 Msa0420430:CDS 25.0%
! TTATGATCAGTTCATTATCT+TGG + chr3_2:68903369-68903388 Msa0420430:three_prime_UTR 25.0%
! TATGATCAGTTCATTATCTT+GGG + chr3_2:68903370-68903389 Msa0420430:three_prime_UTR 25.0%
!! TTCATTTTGCAGATATGTAT+TGG + chr3_2:68903453-68903472 Msa0420430:three_prime_UTR 25.0%
!! TCATTTTGCAGATATGTATT+GGG + chr3_2:68903454-68903473 Msa0420430:three_prime_UTR 25.0%
! GTATCACTTAGTATGTTAAT+TGG + chr3_2:68903492-68903511 Msa0420430:three_prime_UTR 25.0%
!!! ATATTTGTAAGATTTGTTGG+GGG + chr3_2:68903518-68903537 Msa0420430:three_prime_UTR 25.0%
TGTATGTGAAAGTGACTTAT+CGG - chr3_2:68902127-68902146 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG - chr3_2:68902327-68902346 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG + chr3_2:68902342-68902361 Msa0420430:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG - chr3_2:68902452-68902471 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG - chr3_2:68902613-68902632 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG - chr3_2:68902616-68902635 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG - chr3_2:68902656-68902675 None:intergenic 30.0%
!!! TAATATTTTAACCCGTTACC+CGG - chr3_2:68902900-68902919 None:intergenic 30.0%
GTTAAGAAGATTCTGAACAA+CGG + chr3_2:68903083-68903102 Msa0420430:CDS 30.0%
! GTTTTATCCTGATATGAAGA+AGG + chr3_2:68903208-68903227 Msa0420430:CDS 30.0%
TCATAAACCTTCTTCATATC+AGG - chr3_2:68903218-68903237 None:intergenic 30.0%
TCGAGGTTGAGAATATAATT+TGG + chr3_2:68903403-68903422 Msa0420430:three_prime_UTR 30.0%
CGAGGTTGAGAATATAATTT+GGG + chr3_2:68903404-68903423 Msa0420430:three_prime_UTR 30.0%
TATATAGCTAAGAGATCAGT+AGG - chr3_2:68903632-68903651 None:intergenic 30.0%
TGTATGTGAAAGTGACTTAT+CGG - chr3_2:68902127-68902146 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG - chr3_2:68902327-68902346 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG + chr3_2:68902342-68902361 Msa0420430:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG - chr3_2:68902452-68902471 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG - chr3_2:68902613-68902632 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG - chr3_2:68902616-68902635 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG - chr3_2:68902656-68902675 None:intergenic 30.0%
!!! TAATATTTTAACCCGTTACC+CGG - chr3_2:68902900-68902919 None:intergenic 30.0%
GTTAAGAAGATTCTGAACAA+CGG + chr3_2:68903083-68903102 Msa0420430:CDS 30.0%
! GTTTTATCCTGATATGAAGA+AGG + chr3_2:68903208-68903227 Msa0420430:CDS 30.0%
TCATAAACCTTCTTCATATC+AGG - chr3_2:68903218-68903237 None:intergenic 30.0%
TCGAGGTTGAGAATATAATT+TGG + chr3_2:68903403-68903422 Msa0420430:three_prime_UTR 30.0%
CGAGGTTGAGAATATAATTT+GGG + chr3_2:68903404-68903423 Msa0420430:three_prime_UTR 30.0%
TATATAGCTAAGAGATCAGT+AGG - chr3_2:68903632-68903651 None:intergenic 30.0%
CAAAAAAGATGGTGAAGAAG+TGG - chr3_2:68902027-68902046 None:intergenic 35.0%
CTTAACTACTTTGAATGCTG+AGG - chr3_2:68902328-68902347 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG + chr3_2:68902352-68902371 Msa0420430:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG - chr3_2:68902403-68902422 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG - chr3_2:68902427-68902446 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG - chr3_2:68902453-68902472 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG - chr3_2:68902612-68902631 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG - chr3_2:68902653-68902672 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG - chr3_2:68902664-68902683 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG - chr3_2:68902739-68902758 None:intergenic 35.0%
TTATGATGTTCCGTTTACTG+TGG + chr3_2:68903232-68903251 Msa0420430:CDS 35.0%
CAAAAAAGATGGTGAAGAAG+TGG - chr3_2:68902027-68902046 None:intergenic 35.0%
CTTAACTACTTTGAATGCTG+AGG - chr3_2:68902328-68902347 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG + chr3_2:68902352-68902371 Msa0420430:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG - chr3_2:68902403-68902422 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG - chr3_2:68902427-68902446 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG - chr3_2:68902453-68902472 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG - chr3_2:68902612-68902631 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG - chr3_2:68902653-68902672 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG - chr3_2:68902664-68902683 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG - chr3_2:68902739-68902758 None:intergenic 35.0%
TTATGATGTTCCGTTTACTG+TGG + chr3_2:68903232-68903251 Msa0420430:CDS 35.0%
AAGAATGAGTAGACGATGCA+TGG - chr3_2:68901947-68901966 None:intergenic 40.0%
AAGATGGTGAAGAAGTGGAA+TGG - chr3_2:68902022-68902041 None:intergenic 40.0%
GTTACAGATGGTAATTCCGT+TGG + chr3_2:68902270-68902289 Msa0420430:intron 40.0%
AATTCCGTTGGAGTGAACTA+TGG + chr3_2:68902282-68902301 Msa0420430:CDS 40.0%
AAAATCACAAGGAATCGACC+GGG + chr3_2:68902353-68902372 Msa0420430:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG - chr3_2:68902398-68902417 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG - chr3_2:68902399-68902418 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG + chr3_2:68902399-68902418 Msa0420430:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG + chr3_2:68902405-68902424 Msa0420430:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG - chr3_2:68902442-68902461 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG - chr3_2:68902496-68902515 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG - chr3_2:68902509-68902528 None:intergenic 40.0%
!!! ATGGCTTCGATTTGGGTTTT+GGG - chr3_2:68902534-68902553 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG - chr3_2:68902611-68902630 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG - chr3_2:68902738-68902757 None:intergenic 40.0%
TCAAATACGACGACGTTTCA+CGG - chr3_2:68902782-68902801 None:intergenic 40.0%
TGAAACGTCGTCGTATTTGA+TGG + chr3_2:68902782-68902801 Msa0420430:CDS 40.0%
! TTGACTCGTAGGCGAAAAAT+GGG - chr3_2:68902818-68902837 None:intergenic 40.0%
! TTTGACTCGTAGGCGAAAAA+TGG - chr3_2:68902819-68902838 None:intergenic 40.0%
TCAATACAACGACGTTAGAG+TGG + chr3_2:68902971-68902990 Msa0420430:CDS 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG + chr3_2:68902986-68903005 Msa0420430:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG - chr3_2:68903017-68903036 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG + chr3_2:68903016-68903035 Msa0420430:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG + chr3_2:68903020-68903039 Msa0420430:CDS 40.0%
AAGAAGATTCTGAACAACGG+TGG + chr3_2:68903086-68903105 Msa0420430:CDS 40.0%
AGAAGATTCTGAACAACGGT+GGG + chr3_2:68903087-68903106 Msa0420430:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG - chr3_2:68903114-68903133 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG - chr3_2:68903115-68903134 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG - chr3_2:68903116-68903135 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG - chr3_2:68903125-68903144 None:intergenic 40.0%
TCATTATCTTGGGTGTGTCT+AGG + chr3_2:68903380-68903399 Msa0420430:three_prime_UTR 40.0%
AAGAATGAGTAGACGATGCA+TGG - chr3_2:68901947-68901966 None:intergenic 40.0%
AAGATGGTGAAGAAGTGGAA+TGG - chr3_2:68902022-68902041 None:intergenic 40.0%
GTTACAGATGGTAATTCCGT+TGG + chr3_2:68902270-68902289 Msa0420430:intron 40.0%
AATTCCGTTGGAGTGAACTA+TGG + chr3_2:68902282-68902301 Msa0420430:CDS 40.0%
AAAATCACAAGGAATCGACC+GGG + chr3_2:68902353-68902372 Msa0420430:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG - chr3_2:68902398-68902417 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG - chr3_2:68902399-68902418 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG + chr3_2:68902399-68902418 Msa0420430:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG + chr3_2:68902405-68902424 Msa0420430:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG - chr3_2:68902442-68902461 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG - chr3_2:68902496-68902515 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG - chr3_2:68902509-68902528 None:intergenic 40.0%
!!! ATGGCTTCGATTTGGGTTTT+GGG - chr3_2:68902534-68902553 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG - chr3_2:68902611-68902630 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG - chr3_2:68902738-68902757 None:intergenic 40.0%
TCAAATACGACGACGTTTCA+CGG - chr3_2:68902782-68902801 None:intergenic 40.0%
TGAAACGTCGTCGTATTTGA+TGG + chr3_2:68902782-68902801 Msa0420430:CDS 40.0%
! TTGACTCGTAGGCGAAAAAT+GGG - chr3_2:68902818-68902837 None:intergenic 40.0%
! TTTGACTCGTAGGCGAAAAA+TGG - chr3_2:68902819-68902838 None:intergenic 40.0%
TCAATACAACGACGTTAGAG+TGG + chr3_2:68902971-68902990 Msa0420430:CDS 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG + chr3_2:68902986-68903005 Msa0420430:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG - chr3_2:68903017-68903036 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG + chr3_2:68903016-68903035 Msa0420430:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG + chr3_2:68903020-68903039 Msa0420430:CDS 40.0%
AAGAAGATTCTGAACAACGG+TGG + chr3_2:68903086-68903105 Msa0420430:CDS 40.0%
AGAAGATTCTGAACAACGGT+GGG + chr3_2:68903087-68903106 Msa0420430:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG - chr3_2:68903114-68903133 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG - chr3_2:68903115-68903134 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG - chr3_2:68903116-68903135 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG - chr3_2:68903125-68903144 None:intergenic 40.0%
TCATTATCTTGGGTGTGTCT+AGG + chr3_2:68903380-68903399 Msa0420430:three_prime_UTR 40.0%
ATGAGTAGACGATGCATGGT+GGG - chr3_2:68901943-68901962 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG - chr3_2:68901944-68901963 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG - chr3_2:68901971-68901990 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG - chr3_2:68901975-68901994 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG - chr3_2:68901983-68902002 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG - chr3_2:68902000-68902019 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG - chr3_2:68902323-68902342 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG - chr3_2:68902415-68902434 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG - chr3_2:68902421-68902440 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG - chr3_2:68902449-68902468 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG - chr3_2:68902478-68902497 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG - chr3_2:68902497-68902516 None:intergenic 45.0%
!!! TGGCTTCGATTTGGGTTTTG+GGG - chr3_2:68902533-68902552 None:intergenic 45.0%
!!! GATGGCTTCGATTTGGGTTT+TGG - chr3_2:68902535-68902554 None:intergenic 45.0%
CCAATCGCTTTATCTGCTCT+CGG + chr3_2:68902678-68902697 Msa0420430:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG + chr3_2:68902702-68902721 Msa0420430:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG - chr3_2:68902714-68902733 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG - chr3_2:68902765-68902784 None:intergenic 45.0%
!! CGCTTTGTTTCGTGAAAACC+CGG + chr3_2:68902863-68902882 Msa0420430:CDS 45.0%
!! GCTTTGTTTCGTGAAAACCC+GGG + chr3_2:68902864-68902883 Msa0420430:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG + chr3_2:68902987-68903006 Msa0420430:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG + chr3_2:68903019-68903038 Msa0420430:CDS 45.0%
CCAAAATTCCTCTCCGAAGT+AGG - chr3_2:68903185-68903204 None:intergenic 45.0%
! CCTACTTCGGAGAGGAATTT+TGG + chr3_2:68903182-68903201 Msa0420430:CDS 45.0%
TGATGTTCCGTTTACTGTGG+CGG + chr3_2:68903235-68903254 Msa0420430:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG + chr3_2:68903262-68903281 Msa0420430:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG + chr3_2:68903527-68903546 Msa0420430:three_prime_UTR 45.0%
GCAACTTTCACTACACATGG+AGG - chr3_2:68903569-68903588 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG - chr3_2:68903572-68903591 None:intergenic 45.0%
ATGAGTAGACGATGCATGGT+GGG - chr3_2:68901943-68901962 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG - chr3_2:68901944-68901963 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG - chr3_2:68901971-68901990 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG - chr3_2:68901975-68901994 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG - chr3_2:68901983-68902002 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG - chr3_2:68902000-68902019 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG - chr3_2:68902323-68902342 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG - chr3_2:68902415-68902434 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG - chr3_2:68902421-68902440 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG - chr3_2:68902449-68902468 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG - chr3_2:68902478-68902497 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG - chr3_2:68902497-68902516 None:intergenic 45.0%
!!! TGGCTTCGATTTGGGTTTTG+GGG - chr3_2:68902533-68902552 None:intergenic 45.0%
!!! GATGGCTTCGATTTGGGTTT+TGG - chr3_2:68902535-68902554 None:intergenic 45.0%
CCAATCGCTTTATCTGCTCT+CGG + chr3_2:68902678-68902697 Msa0420430:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG + chr3_2:68902702-68902721 Msa0420430:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG - chr3_2:68902714-68902733 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG - chr3_2:68902765-68902784 None:intergenic 45.0%
!! CGCTTTGTTTCGTGAAAACC+CGG + chr3_2:68902863-68902882 Msa0420430:CDS 45.0%
!! GCTTTGTTTCGTGAAAACCC+GGG + chr3_2:68902864-68902883 Msa0420430:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG + chr3_2:68902987-68903006 Msa0420430:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG + chr3_2:68903019-68903038 Msa0420430:CDS 45.0%
CCAAAATTCCTCTCCGAAGT+AGG - chr3_2:68903185-68903204 None:intergenic 45.0%
! CCTACTTCGGAGAGGAATTT+TGG + chr3_2:68903182-68903201 Msa0420430:CDS 45.0%
TGATGTTCCGTTTACTGTGG+CGG + chr3_2:68903235-68903254 Msa0420430:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG + chr3_2:68903262-68903281 Msa0420430:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG + chr3_2:68903527-68903546 Msa0420430:three_prime_UTR 45.0%
GCAACTTTCACTACACATGG+AGG - chr3_2:68903569-68903588 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG - chr3_2:68903572-68903591 None:intergenic 45.0%
! AGACGATGCATGGTGGGATA+GGG - chr3_2:68901937-68901956 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG - chr3_2:68901938-68901957 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG - chr3_2:68901990-68902009 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG + chr3_2:68901988-68902007 Msa0420430:CDS 50.0%
GCGACCATAGTTCACTCCAA+CGG - chr3_2:68902289-68902308 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG + chr3_2:68902481-68902500 Msa0420430:CDS 50.0%
!!! CTTCGATTTGGGTTTTGGGG+TGG - chr3_2:68902530-68902549 None:intergenic 50.0%
GACGAAGACTTCGTTACCGA+CGG - chr3_2:68902559-68902578 None:intergenic 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG - chr3_2:68902605-68902624 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG - chr3_2:68902681-68902700 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG + chr3_2:68902703-68902722 Msa0420430:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG - chr3_2:68902724-68902743 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG - chr3_2:68902779-68902798 None:intergenic 50.0%
! AACGTCAGCGTTTGACTCGT+AGG - chr3_2:68902829-68902848 None:intergenic 50.0%
TCGTGAAAACCCGGGTAATG+TGG + chr3_2:68902872-68902891 Msa0420430:CDS 50.0%
AAACCCGGGTAATGTGGATC+CGG + chr3_2:68902878-68902897 Msa0420430:CDS 50.0%
TTACCCGGATCCACATTACC+CGG - chr3_2:68902885-68902904 None:intergenic 50.0%
GGTAATGTGGATCCGGGTAA+CGG + chr3_2:68902885-68902904 Msa0420430:CDS 50.0%
GTAATGTGGATCCGGGTAAC+GGG + chr3_2:68902886-68902905 Msa0420430:CDS 50.0%
TGGTTGTGAGTGAAACGGGT+TGG + chr3_2:68902991-68903010 Msa0420430:CDS 50.0%
TGGGAAAGTGGGACCTACTT+CGG + chr3_2:68903169-68903188 Msa0420430:CDS 50.0%
GATGTTCCGTTTACTGTGGC+GGG + chr3_2:68903236-68903255 Msa0420430:CDS 50.0%
ATGTTCCGTTTACTGTGGCG+GGG + chr3_2:68903237-68903256 Msa0420430:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG - chr3_2:68903245-68903264 None:intergenic 50.0%
! AGACGATGCATGGTGGGATA+GGG - chr3_2:68901937-68901956 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG - chr3_2:68901938-68901957 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG - chr3_2:68901990-68902009 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG + chr3_2:68901988-68902007 Msa0420430:CDS 50.0%
GCGACCATAGTTCACTCCAA+CGG - chr3_2:68902289-68902308 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG + chr3_2:68902481-68902500 Msa0420430:CDS 50.0%
!!! CTTCGATTTGGGTTTTGGGG+TGG - chr3_2:68902530-68902549 None:intergenic 50.0%
GACGAAGACTTCGTTACCGA+CGG - chr3_2:68902559-68902578 None:intergenic 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG - chr3_2:68902605-68902624 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG - chr3_2:68902681-68902700 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG + chr3_2:68902703-68902722 Msa0420430:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG - chr3_2:68902724-68902743 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG - chr3_2:68902779-68902798 None:intergenic 50.0%
! AACGTCAGCGTTTGACTCGT+AGG - chr3_2:68902829-68902848 None:intergenic 50.0%
TCGTGAAAACCCGGGTAATG+TGG + chr3_2:68902872-68902891 Msa0420430:CDS 50.0%
AAACCCGGGTAATGTGGATC+CGG + chr3_2:68902878-68902897 Msa0420430:CDS 50.0%
TTACCCGGATCCACATTACC+CGG - chr3_2:68902885-68902904 None:intergenic 50.0%
GGTAATGTGGATCCGGGTAA+CGG + chr3_2:68902885-68902904 Msa0420430:CDS 50.0%
GTAATGTGGATCCGGGTAAC+GGG + chr3_2:68902886-68902905 Msa0420430:CDS 50.0%
TGGTTGTGAGTGAAACGGGT+TGG + chr3_2:68902991-68903010 Msa0420430:CDS 50.0%
TGGGAAAGTGGGACCTACTT+CGG + chr3_2:68903169-68903188 Msa0420430:CDS 50.0%
GATGTTCCGTTTACTGTGGC+GGG + chr3_2:68903236-68903255 Msa0420430:CDS 50.0%
ATGTTCCGTTTACTGTGGCG+GGG + chr3_2:68903237-68903256 Msa0420430:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG - chr3_2:68903245-68903264 None:intergenic 50.0%
!! CGGTGTCGTAGAGTTTGACC+CGG - chr3_2:68902374-68902393 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG + chr3_2:68902377-68902396 Msa0420430:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG - chr3_2:68902394-68902413 None:intergenic 55.0%
GACGGCGATGGCTTCGATTT+GGG - chr3_2:68902541-68902560 None:intergenic 55.0%
CAAATCGAAGCCATCGCCGT+CGG + chr3_2:68902540-68902559 Msa0420430:CDS 55.0%
! CATGGCGGGGATGAGGTATT+TGG - chr3_2:68902598-68902617 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG - chr3_2:68902706-68902725 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+GGG + chr3_2:68902879-68902898 Msa0420430:CDS 55.0%
TACCCGGATCCACATTACCC+GGG - chr3_2:68902884-68902903 None:intergenic 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG + chr3_2:68903002-68903021 Msa0420430:CDS 55.0%
TGTACGCAGCAGCGTTCTGT+GGG - chr3_2:68903052-68903071 None:intergenic 55.0%
TTGTACGCAGCAGCGTTCTG+TGG - chr3_2:68903053-68903072 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG + chr3_2:68903053-68903072 Msa0420430:CDS 55.0%
AAGTGGGACCTACTTCGGAG+AGG + chr3_2:68903174-68903193 Msa0420430:CDS 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG + chr3_2:68903386-68903405 Msa0420430:three_prime_UTR 55.0%
!! CGGTGTCGTAGAGTTTGACC+CGG - chr3_2:68902374-68902393 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG + chr3_2:68902377-68902396 Msa0420430:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG - chr3_2:68902394-68902413 None:intergenic 55.0%
GACGGCGATGGCTTCGATTT+GGG - chr3_2:68902541-68902560 None:intergenic 55.0%
CAAATCGAAGCCATCGCCGT+CGG + chr3_2:68902540-68902559 Msa0420430:CDS 55.0%
! CATGGCGGGGATGAGGTATT+TGG - chr3_2:68902598-68902617 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG - chr3_2:68902706-68902725 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+GGG + chr3_2:68902879-68902898 Msa0420430:CDS 55.0%
TACCCGGATCCACATTACCC+GGG - chr3_2:68902884-68902903 None:intergenic 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG + chr3_2:68903002-68903021 Msa0420430:CDS 55.0%
TGTACGCAGCAGCGTTCTGT+GGG - chr3_2:68903052-68903071 None:intergenic 55.0%
TTGTACGCAGCAGCGTTCTG+TGG - chr3_2:68903053-68903072 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG + chr3_2:68903053-68903072 Msa0420430:CDS 55.0%
AAGTGGGACCTACTTCGGAG+AGG + chr3_2:68903174-68903193 Msa0420430:CDS 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG + chr3_2:68903386-68903405 Msa0420430:three_prime_UTR 55.0%
! TTGGAGCCATGTGAGGGCGT+AGG - chr3_2:68902490-68902509 None:intergenic 60.0%
CGACGGCGATGGCTTCGATT+TGG - chr3_2:68902542-68902561 None:intergenic 60.0%
GACTTCGTTACCGACGGCGA+TGG - chr3_2:68902553-68902572 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG - chr3_2:68902595-68902614 None:intergenic 60.0%
GTACGCAGCAGCGTTCTGTG+GGG - chr3_2:68903051-68903070 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG + chr3_2:68903268-68903287 Msa0420430:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG - chr3_2:68903290-68903309 None:intergenic 60.0%
! TTGGAGCCATGTGAGGGCGT+AGG - chr3_2:68902490-68902509 None:intergenic 60.0%
CGACGGCGATGGCTTCGATT+TGG - chr3_2:68902542-68902561 None:intergenic 60.0%
GACTTCGTTACCGACGGCGA+TGG - chr3_2:68902553-68902572 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG - chr3_2:68902595-68902614 None:intergenic 60.0%
GTACGCAGCAGCGTTCTGTG+GGG - chr3_2:68903051-68903070 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG + chr3_2:68903268-68903287 Msa0420430:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG - chr3_2:68903290-68903309 None:intergenic 60.0%
TACCGTGACGTTTCGGCGCC+GGG + chr3_2:68903269-68903288 Msa0420430:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG - chr3_2:68903274-68903293 None:intergenic 65.0%
TACCGTGACGTTTCGGCGCC+GGG + chr3_2:68903269-68903288 Msa0420430:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG - chr3_2:68903274-68903293 None:intergenic 65.0%
! GACGTTTCGGCGCCGGGAAG+CGG + chr3_2:68903275-68903294 Msa0420430:CDS 70.0%
! GACGTTTCGGCGCCGGGAAG+CGG + chr3_2:68903275-68903294 Msa0420430:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 68901910 68903698 68901910 ID=Msa0420430;Name=Msa0420430
chr3_2 mRNA 68901910 68903698 68901910 ID=Msa0420430-mRNA-1;Parent=Msa0420430;Name=Msa0420430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=36|1|1|1|1|1|2|397|362
chr3_2 exon 68901910 68902009 68901910 ID=Msa0420430-mRNA-1:exon:16295;Parent=Msa0420430-mRNA-1
chr3_2 exon 68902277 68903698 68902277 ID=Msa0420430-mRNA-1:exon:16296;Parent=Msa0420430-mRNA-1
chr3_2 five_prime_UTR 68901910 68901945 68901910 ID=Msa0420430-mRNA-1:five_prime_utr;Parent=Msa0420430-mRNA-1
chr3_2 CDS 68901946 68902009 68901946 ID=Msa0420430-mRNA-1:cds;Parent=Msa0420430-mRNA-1
chr3_2 CDS 68902277 68903301 68902277 ID=Msa0420430-mRNA-1:cds;Parent=Msa0420430-mRNA-1
chr3_2 three_prime_UTR 68903302 68903698 68903302 ID=Msa0420430-mRNA-1:three_prime_utr;Parent=Msa0420430-mRNA-1
Gene Sequence

>Msa0420430

ATGCATCGTCTACTCATTCTTTCCATCCTCATTTCCTCATACCTCTCACTTCCACTACTTGCAGATGGTAATTCCGTTGGAGTGAACTATGGTCGCATAGCAAACAACCTACCCTCAGCATTCAAAGTAGTTAAGCTTCTAAAATCACAAGGAATCGACCGGGTCAAACTCTACGACACCGACCCGGCCGTTCTAAAATCCTTATCCGGATCCGGAATCAAAGTAACCGTAAACCTCCCAAACGAACAACTCTTCTATACAGCCAAAAAACTTTCCTACGCCCTCACATGGCTCCAAAAAAACGTCGTCGTTTACCACCCCAAAACCCAAATCGAAGCCATCGCCGTCGGTAACGAAGTCTTCGTCGACACACACAACACCACCAAATACCTCATCCCCGCCATGAAAAACATTCACAAAGCTTTAATCAAATTCAACCTCCACAATTCCATCAAAATCTCTTCACCAATCGCTTTATCTGCTCTCGGATCCTCTTATCCGTCTTCAACCGGGTCATTCAAACCCGATCTCATAGAACCCGTAATTAAACCAATGCTAAACTTCCTCCGTGAAACGTCGTCGTATTTGATGGTCAACGTTTACCCATTTTTCGCCTACGAGTCAAACGCTGACGTTATTTCTTTAAACTACGCTTTGTTTCGTGAAAACCCGGGTAATGTGGATCCGGGTAACGGGTTAAAATATTACAACATCTTCGACGCACAAATCGACGCTGTTTTTGCAGCGCTTAACAAGCTTCAATACAACGACGTTAGAGTGGTTGTGAGTGAAACGGGTTGGCCTTCGAAAGGTGATAGTGATGAGGTGGGTGCATCCCCACAGAACGCTGCTGCGTACAACGGTAATCTTGTTAAGAAGATTCTGAACAACGGTGGGACCCCTTTAAGACCGAATGCGAATCTGACCGTTTATTTATTTGCGCTTTTTAATGAAAATGGGAAAGTGGGACCTACTTCGGAGAGGAATTTTGGAATGTTTTATCCTGATATGAAGAAGGTTTATGATGTTCCGTTTACTGTGGCGGGGTTGAAGAGTTACCGTGACGTTTCGGCGCCGGGAAGCGGCTGA

Protein sequence

>Msa0420430

MHRLLILSILISSYLSLPLLADGNSVGVNYGRIANNLPSAFKVVKLLKSQGIDRVKLYDTDPAVLKSLSGSGIKVTVNLPNEQLFYTAKKLSYALTWLQKNVVVYHPKTQIEAIAVGNEVFVDTHNTTKYLIPAMKNIHKALIKFNLHNSIKISSPIALSALGSSYPSSTGSFKPDLIEPVIKPMLNFLRETSSYLMVNVYPFFAYESNADVISLNYALFRENPGNVDPGNGLKYYNIFDAQIDAVFAALNKLQYNDVRVVVSETGWPSKGDSDEVGASPQNAAAYNGNLVKKILNNGGTPLRPNANLTVYLFALFNENGKVGPTSERNFGMFYPDMKKVYDVPFTVAGLKSYRDVSAPGSG*