AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0257340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257340 MtrunA17_Chr2g0319311 92.529 348 3 2 1 325 1 348 0.0 648
Msa0257340 MtrunA17_Chr4g0076011 61.774 327 79 5 10 336 1 281 2.38e-117 347
Msa0257340 MtrunA17_Chr6g0454101 43.235 340 168 5 10 325 1 339 5.06e-88 274
Msa0257340 MtrunA17_Chr7g0218571 42.899 345 167 5 10 325 1 344 8.04e-88 273
Msa0257340 MtrunA17_Chr3g0097091 33.043 345 191 7 10 325 1 334 5.48e-50 174
Msa0257340 MtrunA17_Chr2g0283461 31.553 206 121 5 121 325 163 349 4.76e-29 117
Msa0257340 MtrunA17_Chr8g0351091 33.166 199 123 2 127 325 238 426 7.61e-29 117
Msa0257340 MtrunA17_Chr2g0290961 32.161 199 121 2 127 325 297 481 1.11e-26 110
Msa0257340 MtrunA17_Chr4g0061711 30.693 202 114 5 131 325 168 350 4.18e-26 108
Msa0257340 MtrunA17_Chr8g0383241 30.653 199 121 3 127 325 124 305 2.19e-25 106
Msa0257340 MtrunA17_Chr2g0277591 29.612 206 125 4 121 325 163 349 8.95e-25 104
Msa0257340 MtrunA17_Chr3g0138381 30.653 199 128 2 127 325 291 479 2.59e-24 103
Msa0257340 MtrunA17_Chr2g0308241 30.986 213 129 6 117 325 152 350 1.29e-23 101
Msa0257340 MtrunA17_Chr7g0246371 33.668 199 120 2 127 325 292 478 2.07e-23 101
Msa0257340 MtrunA17_Chr7g0235161 33.891 239 142 6 90 325 149 374 9.68e-22 96.3
Msa0257340 MtrunA17_Chr6g0456071 30.275 218 136 6 112 325 164 369 1.19e-20 92.8
Msa0257340 MtrunA17_Chr7g0260711 28.492 179 91 3 147 325 324 465 1.07e-17 84.3
Msa0257340 MtrunA17_Chr1g0184751 29.851 134 87 2 132 263 252 380 6.08e-13 69.7
Msa0257340 MtrunA17_Chr7g0245621 32.407 108 69 1 152 259 311 414 7.80e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257340 AT5G54690.1 74.194 341 63 4 10 325 1 341 2.80e-165 472
Msa0257340 AT3G01040.2 44.118 340 165 4 10 325 1 339 2.54e-91 283
Msa0257340 AT3G01040.3 44.118 340 165 4 10 325 1 339 2.54e-91 283
Msa0257340 AT5G15470.1 43.529 340 167 4 10 325 1 339 1.98e-90 280
Msa0257340 AT3G01040.1 39.706 340 147 5 10 325 1 306 2.49e-69 225
Msa0257340 AT3G58790.1 34.603 315 170 5 40 325 39 346 5.36e-47 167
Msa0257340 AT3G58790.2 42.365 203 107 2 127 325 18 214 1.61e-46 163
Msa0257340 AT1G18580.1 30.986 213 135 4 115 325 150 352 1.24e-30 122
Msa0257340 AT5G47780.1 34.171 199 117 2 127 325 246 430 7.69e-29 117
Msa0257340 AT2G20810.1 33.173 208 117 6 121 325 164 352 8.15e-28 114
Msa0257340 AT3G61130.1 33.171 205 116 3 121 325 304 487 2.07e-27 113
Msa0257340 AT3G25140.1 33.641 217 131 4 112 325 167 373 1.38e-24 104
Msa0257340 AT2G46480.2 34.078 179 108 2 147 325 186 354 2.66e-24 103
Msa0257340 AT2G46480.1 34.078 179 108 2 147 325 199 367 3.27e-24 103
Msa0257340 AT2G46480.3 34.078 179 108 2 147 325 186 354 3.43e-24 103
Msa0257340 AT2G46480.4 34.078 179 108 2 147 325 199 367 3.90e-24 103
Msa0257340 AT3G02350.1 33.495 206 124 4 121 325 182 375 8.36e-24 102
Msa0257340 AT4G38270.1 30.147 272 163 8 60 325 244 494 2.11e-23 101
Msa0257340 AT4G38270.2 30.147 272 163 8 60 325 240 490 2.14e-23 101
Msa0257340 AT1G06780.1 26.289 194 108 3 132 325 242 400 1.18e-16 81.3
Msa0257340 AT1G06780.2 26.804 194 107 4 132 325 255 413 1.19e-16 81.3
Msa0257340 AT2G30575.1 28.141 199 107 4 127 325 259 421 1.23e-16 81.3
Msa0257340 AT2G38650.3 37.273 110 63 3 143 252 282 385 8.33e-15 75.9
Msa0257340 AT2G38650.2 33.333 126 79 2 127 252 265 385 1.25e-14 75.5
Msa0257340 AT2G38650.1 33.333 126 79 2 127 252 265 385 1.25e-14 75.5

Find 272 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATGATGATGCCATTTA+AGG 0.125675 2_2:-53070973 Msa0257340:three_prime_UTR
AAAATTAGGGCCAAGGATTT+TGG 0.132357 2_2:-53074771 Msa0257340:CDS
TCTTCCTCAAATGCCCATTT+TGG 0.158216 2_2:-53071660 Msa0257340:three_prime_UTR
CTCCTGTTTAAAACCTTAAA+TGG 0.182442 2_2:+53070960 None:intergenic
TATATTGTGTATGTCTATTT+TGG 0.188360 2_2:-53076498 Msa0257340:exon
TCCATGTTATAGATCCTTTC+TGG 0.198872 2_2:-53072824 Msa0257340:three_prime_UTR
ATATAGATACTCTTGGATTT+TGG 0.205827 2_2:+53074187 None:intergenic
TAACTGTTTACGACCTAATA+AGG 0.231203 2_2:-53073958 Msa0257340:CDS
CGTCGAGGCGCCTTTCTTAT+AGG 0.234099 2_2:-53076376 Msa0257340:CDS
AAAGTTTGGTATATCACTTC+TGG 0.235664 2_2:+53074612 None:intergenic
ACCTAACCTTGCTTAGCATT+TGG 0.237670 2_2:+53076719 None:intergenic
CATTTGTCTTTATTGTATTA+TGG 0.238562 2_2:+53073037 None:intergenic
CAAATGATTAAGATCTTAAT+TGG 0.241018 2_2:-53071420 Msa0257340:three_prime_UTR
TGATGATGGATTGGAAATTT+TGG 0.242376 2_2:-53071022 Msa0257340:three_prime_UTR
AACTGAAACAACCAAGATTT+CGG 0.245251 2_2:+53071304 None:intergenic
AAATGGTATTGATGTAAATT+TGG 0.260338 2_2:-53071067 Msa0257340:three_prime_UTR
TCCTTTGAGATGGGTGGGTT+AGG 0.269222 2_2:-53071195 Msa0257340:three_prime_UTR
ATACATCTACCTGAGGTAAA+AGG 0.269469 2_2:-53073642 Msa0257340:CDS
TCAGAAGAATTCAAGATTCT+TGG 0.275876 2_2:-53071543 Msa0257340:three_prime_UTR
ATGTGTATAACAACCTTATT+AGG 0.277373 2_2:+53073945 None:intergenic
CCTTTGAGATGGGTGGGTTA+GGG 0.279888 2_2:-53071194 Msa0257340:three_prime_UTR
TGGTTATGTTGAATCCAAAA+TGG 0.282635 2_2:+53071646 None:intergenic
AGAAGGTGCGGTCTCAGTTT+AGG 0.283086 2_2:-53073773 Msa0257340:CDS
TAAGAGATTACAGTTGATTC+AGG 0.287098 2_2:+53074740 None:intergenic
GTCCACAATGATCTTAGTTC+TGG 0.292501 2_2:+53072693 None:intergenic
TTTGAGGGATGCATGATATA+TGG 0.301206 2_2:-53071116 Msa0257340:three_prime_UTR
CTTTATTGTATTATGGTAGA+AGG 0.307655 2_2:+53073044 None:intergenic
CCTAACCTTGCTTAGCATTT+GGG 0.308038 2_2:+53076720 None:intergenic
ACAAGTTTGTGATGTCAAAA+AGG 0.308600 2_2:-53073383 Msa0257340:three_prime_UTR
TTTGATTTCTCATTCAAAAT+TGG 0.312041 2_2:-53072122 Msa0257340:three_prime_UTR
TGTCAAGGTTATGCTGTAAA+AGG 0.317717 2_2:+53076657 None:intergenic
CAATTAAGATCTTAATCATT+TGG 0.318601 2_2:+53071421 None:intergenic
ATCAATAACCCTAAACTAAT+AGG 0.320614 2_2:+53071270 None:intergenic
TTCAACATAACCACTGGCTT+TGG 0.323775 2_2:-53071636 Msa0257340:three_prime_UTR
ACATAAAATTAACTTCTATA+TGG 0.324180 2_2:+53077005 None:intergenic
ATTGGCAATGATGAACTAAA+AGG 0.324662 2_2:-53074579 Msa0257340:CDS
CTGCAACATTAGAGCATGAT+AGG 0.327435 2_2:-53072634 Msa0257340:three_prime_UTR
TGGTAATATATGCAAATATA+AGG 0.329451 2_2:+53077127 None:intergenic
CAATTGGTTCATCTAAAGTT+TGG 0.330150 2_2:+53074598 None:intergenic
ACAAACTTTAGAAGAGTTCA+TGG 0.335034 2_2:-53074541 Msa0257340:intron
GGTTGTTGAAAGGGATGTTT+TGG 0.337358 2_2:-53071235 Msa0257340:three_prime_UTR
ACCTAGTCCTTTGTTCCATA+AGG 0.339141 2_2:+53074213 None:intergenic
GAAGGTGCGGTCTCAGTTTA+GGG 0.339266 2_2:-53073772 Msa0257340:CDS
GTTATTGATAGGCTTCTCTA+AGG 0.343552 2_2:-53071256 Msa0257340:three_prime_UTR
CTGTTATTAGGTAACCCTTA+TGG 0.345194 2_2:-53074228 Msa0257340:intron
CCTTTGAAAACCAATCAAAA+TGG 0.346345 2_2:+53073832 None:intergenic
TATGTAACTTAAGGTTTGTT+TGG 0.346365 2_2:+53076912 None:intergenic
ACTGAAACAACCAAGATTTC+GGG 0.348629 2_2:+53071305 None:intergenic
AAATACTCATACTTACAATA+TGG 0.348794 2_2:+53072400 None:intergenic
AGGCATGTTACTGTCCTTCC+AGG 0.350319 2_2:-53076434 Msa0257340:CDS
TTCTCCATTGCTTCTAAAAC+AGG 0.359843 2_2:+53073801 None:intergenic
AACTTCGCAGACTTCGTTAT+CGG 0.363743 2_2:-53071942 Msa0257340:three_prime_UTR
TTGCGCGACTCGAGCCTGTT+AGG 0.369635 2_2:-53073110 Msa0257340:three_prime_UTR
TATTACATATATGTAACTTA+AGG 0.369669 2_2:+53076903 None:intergenic
TAGTTCTTCTTCCACTCATT+AGG 0.370993 2_2:-53072539 Msa0257340:three_prime_UTR
GAGAAATCAAATTACTTTCA+AGG 0.372539 2_2:+53072134 None:intergenic
TATCTGAGGCTAAAACAAAA+TGG 0.373236 2_2:+53074021 None:intergenic
CTGATCTTCAAGGTATTAAC+AGG 0.374467 2_2:+53072027 None:intergenic
TAAGCAATACATATCATCAT+TGG 0.375137 2_2:-53073242 Msa0257340:three_prime_UTR
TTCTGGCATATGCTTGGATT+GGG 0.375631 2_2:-53072807 Msa0257340:three_prime_UTR
TAGGCGTGCTGCTGCGTTGT+TGG 0.378821 2_2:+53074094 None:intergenic
ATGATATGTATTGCTTATAT+TGG 0.379003 2_2:+53073248 None:intergenic
TAAATTGTCAGTGGTGAAAA+TGG 0.381839 2_2:+53071596 None:intergenic
TGTATTACATTCTACAGAAA+AGG 0.383227 2_2:-53073203 Msa0257340:three_prime_UTR
TTGGGTCAGGCATGTCAAAA+TGG 0.384682 2_2:+53076738 None:intergenic
TTCAAGGTTAGGCCAACTAT+TGG 0.384714 2_2:+53071876 None:intergenic
ATGAACTCTTCTAAAGTTTG+TGG 0.385053 2_2:+53074543 None:intergenic
CCTAGTCCTTTGTTCCATAA+GGG 0.386334 2_2:+53074214 None:intergenic
GGCTAAAACAAAATGGTAAT+AGG 0.387821 2_2:+53074028 None:intergenic
AAGAAGGAGGAGATGTTGTT+TGG 0.395383 2_2:+53076826 None:intergenic
TTTCTGGCATATGCTTGGAT+TGG 0.395599 2_2:-53072808 Msa0257340:three_prime_UTR
ATTAGTTTAGGGTTATTGAT+AGG 0.396469 2_2:-53071267 Msa0257340:three_prime_UTR
GGGATTTCAACCCGAAATCT+TGG 0.398914 2_2:-53071315 Msa0257340:three_prime_UTR
TATGCTTGGATTGGGATATC+AGG 0.401194 2_2:-53072799 Msa0257340:three_prime_UTR
GTTTGGTGTGTGTCTATGCT+TGG 0.405185 2_2:+53076929 None:intergenic
TCAATCACAGCAGGTGATAA+AGG 0.405589 2_2:+53073870 None:intergenic
AGAAACAAAGTTCAATGAAA+TGG 0.405916 2_2:+53072259 None:intergenic
TGCAAATATAAGGTTGTTGA+AGG 0.408182 2_2:+53077137 None:intergenic
TTTAGTTCATCATTGCCAAT+TGG 0.409872 2_2:+53074582 None:intergenic
TAACACAGACAACAATGATA+TGG 0.411132 2_2:-53072506 Msa0257340:three_prime_UTR
CCTGGATTGATAGCATTTCA+TGG 0.413843 2_2:-53072852 Msa0257340:three_prime_UTR
TATTGATGTAAATTTGGTAT+TGG 0.415020 2_2:-53071061 Msa0257340:three_prime_UTR
GCCGGATTCAGTTTGTAAAC+TGG 0.416927 2_2:+53071353 None:intergenic
TCAAGACAATGAAGTTGTTT+CGG 0.419494 2_2:+53074140 None:intergenic
CAGAAGAATTCAAGATTCTT+GGG 0.420343 2_2:-53071542 Msa0257340:three_prime_UTR
TGGTTTCTTCATTCAAGGTT+AGG 0.422073 2_2:+53071865 None:intergenic
ACAGCTGTGGATGGCATTGA+TGG 0.427978 2_2:-53076296 Msa0257340:CDS
TCTTATCTTGATAGAACATT+GGG 0.428742 2_2:+53070900 None:intergenic
TGTAGAATATCAAGAACTTA+AGG 0.429446 2_2:-53072163 Msa0257340:three_prime_UTR
CTTATTATCCCATGCAGGCT+TGG 0.429889 2_2:-53073905 Msa0257340:CDS
CTTCTCTAAGGTTGTTGAAA+GGG 0.432248 2_2:-53071244 Msa0257340:three_prime_UTR
GAAGGTGGTTTCTTCATTCA+AGG 0.435414 2_2:+53071860 None:intergenic
TTTATGGGATTGGAGGTAAG+AGG 0.435981 2_2:+53071738 None:intergenic
CTTTCCCTCCTTCAAAATCA+AGG 0.439452 2_2:-53076873 Msa0257340:five_prime_UTR
AGTTCAATGAAATGGTCCTT+TGG 0.440462 2_2:+53072267 None:intergenic
TTTATCACCTGCTGTGATTG+AGG 0.440648 2_2:-53073868 Msa0257340:CDS
TTTATTGTATTATGGTAGAA+GGG 0.445975 2_2:+53073045 None:intergenic
AAGATTTCGGGTTGAAATCC+CGG 0.446170 2_2:+53071317 None:intergenic
GATCCTTTCTGGCATATGCT+TGG 0.446300 2_2:-53072813 Msa0257340:three_prime_UTR
CCTTGCTTAGCATTTGGGTC+AGG 0.448391 2_2:+53076725 None:intergenic
CATTGTTGTCTGTGTTATCA+TGG 0.448706 2_2:+53072512 None:intergenic
CAACTAAGAACTGATCTTCA+AGG 0.448729 2_2:+53072017 None:intergenic
AGATAATGTGCTTGCTGCCT+CGG 0.449906 2_2:-53074003 Msa0257340:CDS
GGGTTGTGAGTGCAGAGAAA+TGG 0.450689 2_2:+53071808 None:intergenic
TCAATCCCAATGAATGTGCT+TGG 0.453282 2_2:-53073314 Msa0257340:three_prime_UTR
CAAACTTTAGATGAACCAAT+TGG 0.453888 2_2:-53074597 Msa0257340:CDS
GTTCATCACTGAATTATACT+TGG 0.454141 2_2:+53073674 None:intergenic
GGTACTTGGAGTGAAAATTC+AGG 0.455300 2_2:+53077070 None:intergenic
TTAAATCAGACCTGAGTTTG+TGG 0.457853 2_2:-53072893 Msa0257340:three_prime_UTR
ACCAAGCTCTTTCAAACAAA+AGG 0.461584 2_2:+53073132 None:intergenic
TTTGAGGAAGAGAGTAACTT+TGG 0.461704 2_2:+53071672 None:intergenic
GAATCCAAAATGGGCATTTG+AGG 0.461750 2_2:+53071656 None:intergenic
GGATGTGGATGTAGCTTTGA+GGG 0.462607 2_2:-53071151 Msa0257340:three_prime_UTR
AAGTTTGGTATATCACTTCT+GGG 0.462799 2_2:+53074613 None:intergenic
AATGAATGTGCTTGGGCCTA+CGG 0.463635 2_2:-53073306 Msa0257340:three_prime_UTR
TGCATATATCTCCAAGTTTG+AGG 0.468657 2_2:-53076454 Msa0257340:CDS
CTTTGAGATGGGTGGGTTAG+GGG 0.469018 2_2:-53071193 Msa0257340:three_prime_UTR
GTAGTTGAGGACGTGGTACT+TGG 0.469071 2_2:+53077056 None:intergenic
GTAGGCCCAAGCACATTCAT+TGG 0.469779 2_2:+53073308 None:intergenic
GCATCTTCCTTTGAGATGGG+TGG 0.470249 2_2:-53071201 Msa0257340:three_prime_UTR
ATGACACACTCTCTCTATGT+AGG 0.472711 2_2:+53077031 None:intergenic
GCCAGTTTACAAACTGAATC+CGG 0.472712 2_2:-53071354 Msa0257340:three_prime_UTR
AACTCTTTAAGTCCTTTGCC+TGG 0.474489 2_2:+53076416 None:intergenic
ACCTGAGTTTGTGGCAGCTA+GGG 0.474996 2_2:-53072884 Msa0257340:three_prime_UTR
GCATGGGATAATAAGTCTTT+CGG 0.475809 2_2:+53073913 None:intergenic
GTGTCATCCACTTCAATGGC+AGG 0.476119 2_2:-53072743 Msa0257340:three_prime_UTR
CAATCCCAATGAATGTGCTT+GGG 0.476318 2_2:-53073313 Msa0257340:three_prime_UTR
GGTTATGTTGAATCCAAAAT+GGG 0.478277 2_2:+53071647 None:intergenic
GCCATGTGACTAGACCTAAC+AGG 0.479850 2_2:+53073096 None:intergenic
GGAAGAGAGTGAGGACTGGA+TGG 0.480496 2_2:-53071172 Msa0257340:three_prime_UTR
GTCATTGTTATAAGCATCAC+AGG 0.484486 2_2:+53073551 None:intergenic
CATCTTCCTTTGAGATGGGT+GGG 0.484840 2_2:-53071200 Msa0257340:three_prime_UTR
ATTCAGTGATGAACCACATT+CGG 0.485585 2_2:-53073665 Msa0257340:CDS
ATCTTATCTTGATAGAACAT+TGG 0.485673 2_2:+53070899 None:intergenic
TACATCTACCTGAGGTAAAA+GGG 0.486443 2_2:-53073641 Msa0257340:CDS
GACATACCAATCAAAAGAAA+AGG 0.487141 2_2:+53071393 None:intergenic
ACAGTAACATGCCTCAAACT+TGG 0.488081 2_2:+53076443 None:intergenic
TAGGGGAAGAGAGTGAGGAC+TGG 0.489162 2_2:-53071176 Msa0257340:three_prime_UTR
GCATGTCAAAATGGTGTTTG+AGG 0.490927 2_2:+53076747 None:intergenic
CTTTAAGTCCTTTGCCTGGA+AGG 0.491497 2_2:+53076420 None:intergenic
TGGATGTGGATGTAGCTTTG+AGG 0.491782 2_2:-53071152 Msa0257340:three_prime_UTR
AAGCAATACATATCATCATT+GGG 0.493192 2_2:-53073241 Msa0257340:three_prime_UTR
TAGGCCCAAGCACATTCATT+GGG 0.493305 2_2:+53073309 None:intergenic
TGGGTTAGGGGAAGAGAGTG+AGG 0.494035 2_2:-53071181 Msa0257340:three_prime_UTR
CATTGATAATGAGTATGAAA+TGG 0.494629 2_2:-53071084 Msa0257340:three_prime_UTR
GGGATATTGAGCAAAAGAAA+AGG 0.497454 2_2:+53071759 None:intergenic
ATCTCAACTTCGCCAATAGT+TGG 0.501904 2_2:-53071888 Msa0257340:three_prime_UTR
CATGGCGATATAGATACTCT+TGG 0.502065 2_2:+53074180 None:intergenic
AAGACCACCTTGTTAAGACT+TGG 0.504189 2_2:+53073507 None:intergenic
GACATGAATGGAAAAGTGAA+TGG 0.504634 2_2:-53073432 Msa0257340:three_prime_UTR
TTTGGATTCAACATAACCAC+TGG 0.509160 2_2:-53071642 Msa0257340:three_prime_UTR
CTGTGGGACATTGACATGAA+TGG 0.510723 2_2:-53073444 Msa0257340:three_prime_UTR
GTATTACATTCTACAGAAAA+GGG 0.512040 2_2:-53073202 Msa0257340:three_prime_UTR
TCAGTTTAGGGGAGGTTCAT+CGG 0.514764 2_2:-53073760 Msa0257340:CDS
ACCTGCTGTGATTGAGGTCA+AGG 0.515480 2_2:-53073862 Msa0257340:CDS
CCTGAGGTAAAAGGGATAGC+TGG 0.516737 2_2:-53073633 Msa0257340:CDS
TATGGCATCTTCCTTTGAGA+TGG 0.518876 2_2:-53071205 Msa0257340:three_prime_UTR
CAATGTCAATGTGTTCAACT+TGG 0.519029 2_2:-53071500 Msa0257340:three_prime_UTR
AAAATGGTATTTGTAATCGA+AGG 0.519154 2_2:-53072578 Msa0257340:three_prime_UTR
CAATGAGAACCAAGCCTGCA+TGG 0.521244 2_2:+53073896 None:intergenic
CCCGGTCATCGATGACTCGC+CGG 0.521804 2_2:+53071335 None:intergenic
TGCGAAGTTCATCAAGGGAT+TGG 0.522471 2_2:+53071956 None:intergenic
CCCAAATGCTAAGCAAGGTT+AGG 0.522482 2_2:-53076720 Msa0257340:five_prime_UTR
AGAAGAAGGTGAGGAAATGA+AGG 0.522738 2_2:+53071842 None:intergenic
GGATTGGTGTTGAATGTGAC+AGG 0.523960 2_2:+53071972 None:intergenic
TTATGGGATTGGAGGTAAGA+GGG 0.524110 2_2:+53071739 None:intergenic
TGGAATGTTCTTGTAGAAGA+AGG 0.524343 2_2:+53071828 None:intergenic
ATATCATCATTGGGTTGCAC+AGG 0.526531 2_2:-53073232 Msa0257340:three_prime_UTR
TAGGAATTGTCAACAAGGGC+AGG 0.527659 2_2:+53074047 None:intergenic
TCCGGCGAGTCATCGATGAC+CGG 0.527988 2_2:-53071336 Msa0257340:three_prime_UTR
ACTGTATGATCAACAAATAG+AGG 0.531080 2_2:+53076613 None:intergenic
AAAGAGACATTGGACTAAGA+AGG 0.531116 2_2:+53076810 None:intergenic
CCATGAAATGCTATCAATCC+AGG 0.531538 2_2:+53072852 None:intergenic
ATTAGAGCATGATAGGGAAA+AGG 0.532555 2_2:-53072627 Msa0257340:three_prime_UTR
CAACTTCAATTGTTGCGCCA+AGG 0.534098 2_2:-53073071 Msa0257340:three_prime_UTR
AATCTTGAATTCTTCTGATG+TGG 0.534326 2_2:+53071548 None:intergenic
TCCCTAGCTGCCACAAACTC+AGG 0.537117 2_2:+53072883 None:intergenic
TTGACTTGGAGGCTTGGAGG+AGG 0.538257 2_2:-53073272 Msa0257340:three_prime_UTR
GCTGGTGTCATCCACTTCAA+TGG 0.538745 2_2:-53072747 Msa0257340:three_prime_UTR
GCTTCTCTAAGGTTGTTGAA+AGG 0.541313 2_2:-53071245 Msa0257340:three_prime_UTR
ACTGACAATTTAGAACTCTC+TGG 0.544169 2_2:-53071585 Msa0257340:three_prime_UTR
CCGGCGAGTCATCGATGACC+GGG 0.544538 2_2:-53071335 Msa0257340:three_prime_UTR
GACCTGAGTTTGTGGCAGCT+AGG 0.547386 2_2:-53072885 Msa0257340:three_prime_UTR
AGAAGAGCATCCTATAAGAA+AGG 0.547606 2_2:+53076366 None:intergenic
CTCTTTCAAACAAAAGGCAA+TGG 0.547735 2_2:+53073138 None:intergenic
GTATGCTGCTTGATGCTACA+TGG 0.547890 2_2:+53074162 None:intergenic
GTATATGTCACAATGAATGT+AGG 0.549602 2_2:+53072055 None:intergenic
TGTTAAAGAGAAAGAGACAT+TGG 0.549633 2_2:+53076800 None:intergenic
TTATGGTAGAAGGGGAGCCT+TGG 0.549766 2_2:+53073054 None:intergenic
GTTGTCTGTGTTATCATGGA+AGG 0.551816 2_2:+53072516 None:intergenic
ATGGCATCTTCCTTTGAGAT+GGG 0.551979 2_2:-53071204 Msa0257340:three_prime_UTR
GCTTTGCCCTGCCATTGAAG+TGG 0.551979 2_2:+53072736 None:intergenic
AACTGATCTTACACCTCTGT+GGG 0.552088 2_2:-53073460 Msa0257340:three_prime_UTR
CAGCTAGGGACATTACCTCC+TGG 0.553175 2_2:-53072870 Msa0257340:three_prime_UTR
AGTAACTTTGGTGATCTAAG+TGG 0.553292 2_2:+53071684 None:intergenic
GAGTGAGGACTGGATGGATG+TGG 0.554246 2_2:-53071166 Msa0257340:three_prime_UTR
TTCATCACTGAATTATACTT+GGG 0.554268 2_2:+53073675 None:intergenic
TGTTATTGCAGCAAAACTAC+AGG 0.556038 2_2:-53073706 Msa0257340:CDS
TGTGCATGTATGCATGATGA+TGG 0.556364 2_2:-53071036 Msa0257340:three_prime_UTR
GGTCGTCTACCCAAAATCCT+TGG 0.557130 2_2:+53074761 None:intergenic
TAGACATACACAATATAAGC+AGG 0.559239 2_2:+53076504 None:intergenic
GTAGCTTTGAGGGGAACAGT+AGG 0.560271 2_2:-53071141 Msa0257340:three_prime_UTR
CAAAACAAGTGCTCTACCAT+AGG 0.561432 2_2:-53076272 Msa0257340:intron
GCCTTGACCTCAATCACAGC+AGG 0.564670 2_2:+53073861 None:intergenic
AAATGGTATTTGTAATCGAA+GGG 0.565166 2_2:-53072577 Msa0257340:three_prime_UTR
CCCTAACCCACCCATCTCAA+AGG 0.566184 2_2:+53071194 None:intergenic
AATCCAAGCATATGCCAGAA+AGG 0.569673 2_2:+53072810 None:intergenic
AAGGTTATGCTGTAAAAGGA+AGG 0.570046 2_2:+53076661 None:intergenic
TAGCTTTGAGGGGAACAGTA+GGG 0.574005 2_2:-53071140 Msa0257340:three_prime_UTR
AACTCGTAGTTGAGAAGTCA+TGG 0.574106 2_2:+53072604 None:intergenic
GTTACTGTCCTTCCAGGCAA+AGG 0.576045 2_2:-53076428 Msa0257340:CDS
AGAAGGTGAGGAAATGAAGG+TGG 0.577192 2_2:+53071845 None:intergenic
AAAGACTTATTATCCCATGC+AGG 0.581237 2_2:-53073910 Msa0257340:CDS
CTCTATGTAGGGTGTAGTTG+AGG 0.581880 2_2:+53077043 None:intergenic
TTATGAAACCTTGAGGACGC+AGG 0.582772 2_2:+53072324 None:intergenic
AGCAATGGAGAAAGATCAGA+AGG 0.582954 2_2:-53073790 Msa0257340:CDS
TGTGAAATGAAATAAAGAAG+AGG 0.586272 2_2:-53076580 Msa0257340:five_prime_UTR
GAAGTCTGCGAAGTTCATCA+AGG 0.586654 2_2:+53071950 None:intergenic
TATATGTCACAATGAATGTA+GGG 0.586670 2_2:+53072056 None:intergenic
TGACACACTCTCTCTATGTA+GGG 0.587504 2_2:+53077032 None:intergenic
TGCAACATTAGAGCATGATA+GGG 0.593846 2_2:-53072633 Msa0257340:three_prime_UTR
GTTGACGATGTTGAGAATGC+TGG 0.595078 2_2:-53072765 Msa0257340:three_prime_UTR
TTATTGTATTATGGTAGAAG+GGG 0.597161 2_2:+53073046 None:intergenic
GCAAATATAAGGTTGTTGAA+GGG 0.598006 2_2:+53077138 None:intergenic
GCCTGTTAGGTCTAGTCACA+TGG 0.598046 2_2:-53073097 Msa0257340:three_prime_UTR
CAGGTAGATGTATCCGAATG+TGG 0.599453 2_2:+53073652 None:intergenic
AATGAGAACCAAGCCTGCAT+GGG 0.602294 2_2:+53073897 None:intergenic
TATGGAACAAAGGACTAGGT+TGG 0.602971 2_2:-53074210 Msa0257340:CDS
AACTGCAAGAACTCATGTCA+AGG 0.603464 2_2:+53076642 None:intergenic
GCAATGATGAACTAAAAGGA+AGG 0.603483 2_2:-53074575 Msa0257340:CDS
TGAAATAAAAGAGAGACCAA+AGG 0.607394 2_2:-53072283 Msa0257340:three_prime_UTR
CCCTTATGGAACAAAGGACT+AGG 0.608232 2_2:-53074214 Msa0257340:CDS
ACAACAATGATATGGCATCA+TGG 0.616836 2_2:-53072498 Msa0257340:three_prime_UTR
GTGCGGTCTCAGTTTAGGGG+AGG 0.618601 2_2:-53073768 Msa0257340:CDS
ATGTATGCATGATGATGGAT+TGG 0.618691 2_2:-53071031 Msa0257340:three_prime_UTR
AGGTAACCCTTATGGAACAA+AGG 0.619724 2_2:-53074220 Msa0257340:CDS
GCCAGAAAGGATCTATAACA+TGG 0.620554 2_2:+53072823 None:intergenic
TTCCAGAACTAAGATCATTG+TGG 0.622845 2_2:-53072695 Msa0257340:three_prime_UTR
AAGTCTGCGAAGTTCATCAA+GGG 0.623822 2_2:+53071951 None:intergenic
TCAATGGCAGGGCAAAGCCA+TGG 0.624321 2_2:-53072731 Msa0257340:three_prime_UTR
GTTGTTTCCAAGTCTTAACA+AGG 0.625853 2_2:-53073514 Msa0257340:three_prime_UTR
AAACTGATCTTACACCTCTG+TGG 0.626571 2_2:-53073461 Msa0257340:three_prime_UTR
CCTGACCCAAATGCTAAGCA+AGG 0.628392 2_2:-53076725 Msa0257340:five_prime_UTR
GCAGGAACTAGTTCCGCAGA+CGG 0.630003 2_2:+53074065 None:intergenic
ACGCCTACAGCTACCGTCTG+CGG 0.631399 2_2:-53074078 Msa0257340:CDS
TGTCATCCACTTCAATGGCA+GGG 0.638507 2_2:-53072742 Msa0257340:three_prime_UTR
TGTTCTTGTAGAAGAAGGTG+AGG 0.639097 2_2:+53071833 None:intergenic
GGAGCAGTGGAAACATGCAA+TGG 0.639468 2_2:-53073411 Msa0257340:three_prime_UTR
AAGCTAATTATGAAACCTTG+AGG 0.641530 2_2:+53072317 None:intergenic
GGCAGCAAGCACATTATCTG+AGG 0.641548 2_2:+53074007 None:intergenic
GTTTCCAAGTCTTAACAAGG+TGG 0.642127 2_2:-53073511 Msa0257340:three_prime_UTR
GAGACATTGGACTAAGAAGG+AGG 0.643791 2_2:+53076813 None:intergenic
GGAAAAGCTATGTCTAGCCA+TGG 0.645591 2_2:+53072714 None:intergenic
ATCATGGAAGGCCTAATGAG+TGG 0.647033 2_2:+53072528 None:intergenic
TGGAAAAGTGAATGGAGCAG+TGG 0.647140 2_2:-53073424 Msa0257340:three_prime_UTR
GGTAATAGGAATTGTCAACA+AGG 0.647228 2_2:+53074042 None:intergenic
GTAGGGTGTAGTTGAGGACG+TGG 0.650259 2_2:+53077049 None:intergenic
CAGAGAACAACTTCATACAA+TGG 0.654122 2_2:-53072098 Msa0257340:three_prime_UTR
GTAATAGGAATTGTCAACAA+GGG 0.660966 2_2:+53074043 None:intergenic
TGGAGAAAGATCAGAAGGTG+CGG 0.665818 2_2:-53073785 Msa0257340:CDS
AAGGTGCGGTCTCAGTTTAG+GGG 0.668263 2_2:-53073771 Msa0257340:CDS
AGAGAGTTCTAAATTGTCAG+TGG 0.670269 2_2:+53071587 None:intergenic
GTTCCGCAGACGGTAGCTGT+AGG 0.678466 2_2:+53074075 None:intergenic
TCAAAGTGAAAGTTGCGTCG+AGG 0.683701 2_2:-53076391 Msa0257340:CDS
CAACTGGTTCAACTAATGTG+AGG 0.686416 2_2:+53070851 None:intergenic
CATTCGGATACATCTACCTG+AGG 0.701975 2_2:-53073649 Msa0257340:CDS
GTATCACAATGTCATCGTCG+AGG 0.702865 2_2:+53073484 None:intergenic
GATGTGGATGTAGCTTTGAG+GGG 0.707666 2_2:-53071150 Msa0257340:three_prime_UTR
GAGTGATGTTGCAACAACCG+AGG 0.712252 2_2:+53073986 None:intergenic
TGAAATGCTATCAATCCAGG+AGG 0.724414 2_2:+53072855 None:intergenic
GATTGGTGTTGAATGTGACA+GGG 0.754047 2_2:+53071973 None:intergenic
TTCATGTCAATGTCCCACAG+AGG 0.769997 2_2:+53073447 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTTTTATTT+TGG + chr2_2:53070897-53070916 None:intergenic 0.0%
!! TATAATATAAAAAAACCAAA+TGG + chr2_2:53071465-53071484 None:intergenic 10.0%
!! ACATAAAATTAACTTCTATA+TGG + chr2_2:53070991-53071010 None:intergenic 15.0%
!! TATTACATATATGTAACTTA+AGG + chr2_2:53071093-53071112 None:intergenic 15.0%
!!! TTTTGATATATGTTATTTCA+AGG + chr2_2:53071312-53071331 None:intergenic 15.0%
!!! AATGATTCATATTTTAAACT+CGG - chr2_2:53071856-53071875 Msa0257340:three_prime_UTR 15.0%
!!! TAATGGAAAATTTTATTCTA+TGG + chr2_2:53072531-53072550 None:intergenic 15.0%
!! AAGATAATTTATTATATGCA+AGG + chr2_2:53072591-53072610 None:intergenic 15.0%
!! GAATTGTTAATAACTTATAA+TGG + chr2_2:53072693-53072712 None:intergenic 15.0%
!!! TGAAATTTTTAGATATTAGA+GGG + chr2_2:53074662-53074681 None:intergenic 15.0%
!!! TTGAAATTTTTAGATATTAG+AGG + chr2_2:53074663-53074682 None:intergenic 15.0%
!! TGGTAATATATGCAAATATA+AGG + chr2_2:53070869-53070888 None:intergenic 20.0%
!!! TTTTTTTTATTTTGGTCTCT+TGG + chr2_2:53070889-53070908 None:intergenic 20.0%
!!! ATTAATTACCTTGATTTTGA+AGG + chr2_2:53071131-53071150 None:intergenic 20.0%
!!! TATATTGTGTATGTCTATTT+TGG - chr2_2:53071495-53071514 Msa0257340:three_prime_UTR 20.0%
!!! GATGATTCATATTTTAAACT+CGG - chr2_2:53071986-53072005 Msa0257340:three_prime_UTR 20.0%
!!! ATAGTAATTATGTCACATTT+TGG - chr2_2:53072080-53072099 Msa0257340:three_prime_UTR 20.0%
!!! CATTTTTATTGATTTGTTAG+AGG + chr2_2:53072262-53072281 None:intergenic 20.0%
!! CAAATCAATAAAAATGTTAC+CGG - chr2_2:53072266-53072285 Msa0257340:three_prime_UTR 20.0%
!!! AAGATTTTAAAATCAAAAGC+CGG + chr2_2:53072288-53072307 None:intergenic 20.0%
!! TTTCCATTATAAAATAGACA+AGG - chr2_2:53072542-53072561 Msa0257340:three_prime_UTR 20.0%
!!! AAACCTTGTCTATTTTATAA+TGG + chr2_2:53072548-53072567 None:intergenic 20.0%
!! GTTATTAACAATTCAAAACT+TGG - chr2_2:53072699-53072718 Msa0257340:three_prime_UTR 20.0%
!! TTGTCAACCATATAAAAATA+CGG + chr2_2:53073026-53073045 None:intergenic 20.0%
!! TAACTTCTAATTATATTTGC+AGG - chr2_2:53073187-53073206 Msa0257340:three_prime_UTR 20.0%
!!! ATTTCACTTTGATTTTCTAT+TGG - chr2_2:53073326-53073345 Msa0257340:three_prime_UTR 20.0%
!! ATGATATGTATTGCTTATAT+TGG + chr2_2:53074748-53074767 None:intergenic 20.0%
!! TTTATTGTATTATGGTAGAA+GGG + chr2_2:53074951-53074970 None:intergenic 20.0%
!! CATTTGTCTTTATTGTATTA+TGG + chr2_2:53074959-53074978 None:intergenic 20.0%
!!! GTAAAATTTTAAAGCAAGAA+AGG + chr2_2:53075522-53075541 None:intergenic 20.0%
!! AAATACTCATACTTACAATA+TGG + chr2_2:53075596-53075615 None:intergenic 20.0%
!!! TTTGATTTCTCATTCAAAAT+TGG - chr2_2:53075871-53075890 Msa0257340:intron 20.0%
!!! GAAGTTGTTTATTCTTTTAT+GGG + chr2_2:53076273-53076292 None:intergenic 20.0%
!!! TGAAGTTGTTTATTCTTTTA+TGG + chr2_2:53076274-53076293 None:intergenic 20.0%
!! CAATTAAGATCTTAATCATT+TGG + chr2_2:53076575-53076594 None:intergenic 20.0%
!! CAAATGATTAAGATCTTAAT+TGG - chr2_2:53076573-53076592 Msa0257340:five_prime_UTR 20.0%
!!! AAATGGTATTGATGTAAATT+TGG - chr2_2:53076926-53076945 Msa0257340:five_prime_UTR 20.0%
!! TATTGATGTAAATTTGGTAT+TGG - chr2_2:53076932-53076951 Msa0257340:five_prime_UTR 20.0%
!!! GCTTTTTAGCATATAGTTTT+TGG + chr2_2:53071027-53071046 None:intergenic 25.0%
!! TATGTAACTTAAGGTTTGTT+TGG + chr2_2:53071084-53071103 None:intergenic 25.0%
! TGTGAAATGAAATAAAGAAG+AGG - chr2_2:53071413-53071432 Msa0257340:three_prime_UTR 25.0%
! ATCATTTGATCTTCAATCAA+TGG - chr2_2:53072041-53072060 Msa0257340:three_prime_UTR 25.0%
!!! AAGCATGTTATTTTTTGCAA+AGG - chr2_2:53072191-53072210 Msa0257340:three_prime_UTR 25.0%
!!! TTTATTGATTTGTTAGAGGT+TGG + chr2_2:53072258-53072277 None:intergenic 25.0%
! ACAATTAGAATAGTTACTGT+TGG - chr2_2:53072494-53072513 Msa0257340:three_prime_UTR 25.0%
!!! AAAACTTGGCTGTATTTTTA+TGG - chr2_2:53072713-53072732 Msa0257340:three_prime_UTR 25.0%
!!! AAACTTGGCTGTATTTTTAT+GGG - chr2_2:53072714-53072733 Msa0257340:three_prime_UTR 25.0%
!!! TAATTCCCCGTATTTTTATA+TGG - chr2_2:53073016-53073035 Msa0257340:three_prime_UTR 25.0%
! TGTCAACCATATAAAAATAC+GGG + chr2_2:53073025-53073044 None:intergenic 25.0%
!! GAATTGGATGTATTTTCATA+TGG - chr2_2:53073090-53073109 Msa0257340:three_prime_UTR 25.0%
! GTTGTCTAGGAAAAAAATTA+GGG - chr2_2:53073209-53073228 Msa0257340:three_prime_UTR 25.0%
!!! AAATGACATGACTTTTTCAT+AGG - chr2_2:53073356-53073375 Msa0257340:three_prime_UTR 25.0%
! CACTAGAATTATTCCAAATT+TGG + chr2_2:53073697-53073716 None:intergenic 25.0%
! ATGAGAAATGAACTGTTATT+AGG - chr2_2:53073753-53073772 Msa0257340:CDS 25.0%
!! ATATAGATACTCTTGGATTT+TGG + chr2_2:53073809-53073828 None:intergenic 25.0%
! ATGTGTATAACAACCTTATT+AGG + chr2_2:53074051-53074070 None:intergenic 25.0%
!!! CATTTTGATTGGTTTTCAAA+GGG - chr2_2:53074162-53074181 Msa0257340:CDS 25.0%
!!! ATTTTGATTGGTTTTCAAAG+GGG - chr2_2:53074163-53074182 Msa0257340:CDS 25.0%
! TTCATCACTGAATTATACTT+GGG + chr2_2:53074321-53074340 None:intergenic 25.0%
! CAGGCACAAAAATATTTATT+TGG + chr2_2:53074426-53074445 None:intergenic 25.0%
! TAAGCAATACATATCATCAT+TGG - chr2_2:53074751-53074770 Msa0257340:CDS 25.0%
! AAGCAATACATATCATCATT+GGG - chr2_2:53074752-53074771 Msa0257340:CDS 25.0%
! TGTATTACATTCTACAGAAA+AGG - chr2_2:53074790-53074809 Msa0257340:intron 25.0%
! GTATTACATTCTACAGAAAA+GGG - chr2_2:53074791-53074810 Msa0257340:intron 25.0%
! TTATTGTATTATGGTAGAAG+GGG + chr2_2:53074950-53074969 None:intergenic 25.0%
! CTTTATTGTATTATGGTAGA+AGG + chr2_2:53074952-53074971 None:intergenic 25.0%
! AAAATGGTATTTGTAATCGA+AGG - chr2_2:53075415-53075434 Msa0257340:intron 25.0%
! AAATGGTATTTGTAATCGAA+GGG - chr2_2:53075416-53075435 Msa0257340:intron 25.0%
! AGAAACAAAGTTCAATGAAA+TGG + chr2_2:53075737-53075756 None:intergenic 25.0%
! TGTAGAATATCAAGAACTTA+AGG - chr2_2:53075830-53075849 Msa0257340:intron 25.0%
! GAGAAATCAAATTACTTTCA+AGG + chr2_2:53075862-53075881 None:intergenic 25.0%
! TATATGTCACAATGAATGTA+GGG + chr2_2:53075940-53075959 None:intergenic 25.0%
!!! GATTGTTTTGTATAATCTGA+TGG + chr2_2:53076088-53076107 None:intergenic 25.0%
!! TGTTTATTCTTTTATGGGAT+TGG + chr2_2:53076268-53076287 None:intergenic 25.0%
!!! TTGATTTTGCCTATTAGTTT+AGG - chr2_2:53076714-53076733 Msa0257340:five_prime_UTR 25.0%
!!! TGATTTTGCCTATTAGTTTA+GGG - chr2_2:53076715-53076734 Msa0257340:five_prime_UTR 25.0%
! ATCAATAACCCTAAACTAAT+AGG + chr2_2:53076726-53076745 None:intergenic 25.0%
!! ATTAGTTTAGGGTTATTGAT+AGG - chr2_2:53076726-53076745 Msa0257340:five_prime_UTR 25.0%
!!! CATTGATAATGAGTATGAAA+TGG - chr2_2:53076909-53076928 Msa0257340:five_prime_UTR 25.0%
! TCTTATCTTGATAGAACATT+GGG + chr2_2:53077096-53077115 None:intergenic 25.0%
! ATCTTATCTTGATAGAACAT+TGG + chr2_2:53077097-53077116 None:intergenic 25.0%
!!! AGCATATAGTTTTTGGAGTT+TGG + chr2_2:53071020-53071039 None:intergenic 30.0%
!! ATTACCTTGATTTTGAAGGA+GGG + chr2_2:53071127-53071146 None:intergenic 30.0%
!! AATTACCTTGATTTTGAAGG+AGG + chr2_2:53071128-53071147 None:intergenic 30.0%
TGTTAAAGAGAAAGAGACAT+TGG + chr2_2:53071196-53071215 None:intergenic 30.0%
ACTGTATGATCAACAAATAG+AGG + chr2_2:53071383-53071402 None:intergenic 30.0%
!! AACCTGTTTGTTTTTCCATT+TGG - chr2_2:53071447-53071466 Msa0257340:three_prime_UTR 30.0%
AACCAAATGGAAAAACAAAC+AGG + chr2_2:53071452-53071471 None:intergenic 30.0%
TAGACATACACAATATAAGC+AGG + chr2_2:53071492-53071511 None:intergenic 30.0%
!! TGTGTATGTCTATTTTGGAT+TGG - chr2_2:53071500-53071519 Msa0257340:three_prime_UTR 30.0%
TGTAGGAAATAGATTCCTTA+GGG + chr2_2:53072106-53072125 None:intergenic 30.0%
ATGTAGGAAATAGATTCCTT+AGG + chr2_2:53072107-53072126 None:intergenic 30.0%
TCTGTTATTACAGATTCACT+TGG + chr2_2:53072393-53072412 None:intergenic 30.0%
AATTGTGAAACATAAAGTCC+AGG + chr2_2:53072670-53072689 None:intergenic 30.0%
TTTAATCCCTGAATAGGAAA+AGG - chr2_2:53072748-53072767 Msa0257340:three_prime_UTR 30.0%
TTGCAATTTATCTGCATTCA+GGG + chr2_2:53072789-53072808 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG + chr2_2:53072790-53072809 None:intergenic 30.0%
TTGCAATTTCTTTGCATTCA+AGG - chr2_2:53072951-53072970 Msa0257340:three_prime_UTR 30.0%
! TGACTACTCTTTTCTCATTT+AGG - chr2_2:53072981-53073000 Msa0257340:three_prime_UTR 30.0%
! GACTACTCTTTTCTCATTTA+GGG - chr2_2:53072982-53073001 Msa0257340:three_prime_UTR 30.0%
GTCAACCATATAAAAATACG+GGG + chr2_2:53073024-53073043 None:intergenic 30.0%
TCAAGTCTTAGTTTCAGTAT+AGG + chr2_2:53073072-53073091 None:intergenic 30.0%
ACTGAAACTAAGACTTGAAT+TGG - chr2_2:53073074-53073093 Msa0257340:three_prime_UTR 30.0%
ATTATATTTGCAGGTTGTCT+AGG - chr2_2:53073196-53073215 Msa0257340:three_prime_UTR 30.0%
GGTTGTCTAGGAAAAAAATT+AGG - chr2_2:53073208-53073227 Msa0257340:three_prime_UTR 30.0%
! TAAGAGATTACAGTTGATTC+AGG + chr2_2:53073256-53073275 None:intergenic 30.0%
!! TCACTTTGATTTTCTATTGG+TGG - chr2_2:53073329-53073348 Msa0257340:three_prime_UTR 30.0%
AAGTTTGGTATATCACTTCT+GGG + chr2_2:53073383-53073402 None:intergenic 30.0%
AAAGTTTGGTATATCACTTC+TGG + chr2_2:53073384-53073403 None:intergenic 30.0%
! CAATTGGTTCATCTAAAGTT+TGG + chr2_2:53073398-53073417 None:intergenic 30.0%
CAAACTTTAGATGAACCAAT+TGG - chr2_2:53073396-53073415 Msa0257340:three_prime_UTR 30.0%
! TTTAGTTCATCATTGCCAAT+TGG + chr2_2:53073414-53073433 None:intergenic 30.0%
ATTGGCAATGATGAACTAAA+AGG - chr2_2:53073414-53073433 Msa0257340:three_prime_UTR 30.0%
!! ATGAACTCTTCTAAAGTTTG+TGG + chr2_2:53073453-53073472 None:intergenic 30.0%
! ACAAACTTTAGAAGAGTTCA+TGG - chr2_2:53073452-53073471 Msa0257340:three_prime_UTR 30.0%
! AAGTTTTACTGCAAATGTCT+TGG + chr2_2:53073505-53073524 None:intergenic 30.0%
TGCAGTAAAACTTAGAGAAA+TGG - chr2_2:53073512-53073531 Msa0257340:three_prime_UTR 30.0%
TCAAGACAATGAAGTTGTTT+CGG + chr2_2:53073856-53073875 None:intergenic 30.0%
GTAATAGGAATTGTCAACAA+GGG + chr2_2:53073953-53073972 None:intergenic 30.0%
GGCTAAAACAAAATGGTAAT+AGG + chr2_2:53073968-53073987 None:intergenic 30.0%
! TATCTGAGGCTAAAACAAAA+TGG + chr2_2:53073975-53073994 None:intergenic 30.0%
TAACTGTTTACGACCTAATA+AGG - chr2_2:53074035-53074054 Msa0257340:CDS 30.0%
! CCTTTGAAAACCAATCAAAA+TGG + chr2_2:53074164-53074183 None:intergenic 30.0%
!!! CCATTTTGATTGGTTTTCAA+AGG - chr2_2:53074161-53074180 Msa0257340:CDS 30.0%
! AGTTTTGCTGCAATAACATT+TGG + chr2_2:53074285-53074304 None:intergenic 30.0%
GTTCATCACTGAATTATACT+TGG + chr2_2:53074322-53074341 None:intergenic 30.0%
ACAAGTTTGTGATGTCAAAA+AGG - chr2_2:53074610-53074629 Msa0257340:CDS 30.0%
!! CTTATGAGCTATCACTTTTA+TGG + chr2_2:53075041-53075060 None:intergenic 30.0%
TCAACTACGAGTTACAAAAA+TGG - chr2_2:53075399-53075418 Msa0257340:intron 30.0%
TAACACAGACAACAATGATA+TGG - chr2_2:53075487-53075506 Msa0257340:intron 30.0%
AAGCTAATTATGAAACCTTG+AGG + chr2_2:53075679-53075698 None:intergenic 30.0%
TGAAATAAAAGAGAGACCAA+AGG - chr2_2:53075710-53075729 Msa0257340:intron 30.0%
GTATATGTCACAATGAATGT+AGG + chr2_2:53075941-53075960 None:intergenic 30.0%
!!! TTTTTAAGTGTGTGAGAGAT+GGG + chr2_2:53076209-53076228 None:intergenic 30.0%
!!! ATTTTTAAGTGTGTGAGAGA+TGG + chr2_2:53076210-53076229 None:intergenic 30.0%
! TTATTCTTTTATGGGATTGG+AGG + chr2_2:53076265-53076284 None:intergenic 30.0%
GGTTATGTTGAATCCAAAAT+GGG + chr2_2:53076349-53076368 None:intergenic 30.0%
TGGTTATGTTGAATCCAAAA+TGG + chr2_2:53076350-53076369 None:intergenic 30.0%
TAAATTGTCAGTGGTGAAAA+TGG + chr2_2:53076400-53076419 None:intergenic 30.0%
AATCTTGAATTCTTCTGATG+TGG + chr2_2:53076448-53076467 None:intergenic 30.0%
TCAGAAGAATTCAAGATTCT+TGG - chr2_2:53076450-53076469 Msa0257340:CDS 30.0%
CAGAAGAATTCAAGATTCTT+GGG - chr2_2:53076451-53076470 Msa0257340:CDS 30.0%
!!! ATTGCAGCTTTTTTTAAGCT+AGG - chr2_2:53076543-53076562 Msa0257340:five_prime_UTR 30.0%
!!! GCTTTTTTTAAGCTAGGATT+AGG - chr2_2:53076549-53076568 Msa0257340:five_prime_UTR 30.0%
GACATACCAATCAAAAGAAA+AGG + chr2_2:53076603-53076622 None:intergenic 30.0%
!! AACTGGCTCTTGATATTTTT+GGG + chr2_2:53076626-53076645 None:intergenic 30.0%
!! AAACTGGCTCTTGATATTTT+TGG + chr2_2:53076627-53076646 None:intergenic 30.0%
AACTGAAACAACCAAGATTT+CGG + chr2_2:53076692-53076711 None:intergenic 30.0%
!!! TGATGATGGATTGGAAATTT+TGG - chr2_2:53076971-53076990 Msa0257340:five_prime_UTR 30.0%
! TAGAATGATGATGCCATTTA+AGG - chr2_2:53077020-53077039 Msa0257340:five_prime_UTR 30.0%
!!! TGCCATTTAAGGTTTTAAAC+AGG - chr2_2:53077031-53077050 Msa0257340:five_prime_UTR 30.0%
! CTCCTGTTTAAAACCTTAAA+TGG + chr2_2:53077036-53077055 None:intergenic 30.0%
TGCTAAAAAGCTTCATGTTG+AGG - chr2_2:53071036-53071055 Msa0257340:three_prime_UTR 35.0%
AAAGAGACATTGGACTAAGA+AGG + chr2_2:53071186-53071205 None:intergenic 35.0%
AAGGTTATGCTGTAAAAGGA+AGG + chr2_2:53071335-53071354 None:intergenic 35.0%
TGTCAAGGTTATGCTGTAAA+AGG + chr2_2:53071339-53071358 None:intergenic 35.0%
TGCATATATCTCCAAGTTTG+AGG - chr2_2:53071539-53071558 Msa0257340:three_prime_UTR 35.0%
!! AGAAGAGCATCCTATAAGAA+AGG + chr2_2:53071630-53071649 None:intergenic 35.0%
!! TGTTCTTCACTTTTCTTCTG+AGG - chr2_2:53071659-53071678 Msa0257340:three_prime_UTR 35.0%
!!! TGTGTTTGTTTTAACAGCTG+TGG - chr2_2:53071684-53071703 Msa0257340:three_prime_UTR 35.0%
!!! TTTGTTTTAACAGCTGTGGA+TGG - chr2_2:53071688-53071707 Msa0257340:three_prime_UTR 35.0%
AAGCGAGATATTGTGACTAA+AGG + chr2_2:53071807-53071826 None:intergenic 35.0%
TGATTACGCAGTTAGAAAGA+AGG - chr2_2:53071940-53071959 Msa0257340:three_prime_UTR 35.0%
! ATTTAACTAGCCTCAAATCC+TGG - chr2_2:53072649-53072668 Msa0257340:three_prime_UTR 35.0%
AACATAAAGTCCAGGATTTG+AGG + chr2_2:53072662-53072681 None:intergenic 35.0%
! AGTCACTTTAATCCCTGAAT+AGG - chr2_2:53072742-53072761 Msa0257340:three_prime_UTR 35.0%
ACTAACAGAGTCTACATTCA+GGG + chr2_2:53072818-53072837 None:intergenic 35.0%
ACTAACAGAGTCTACATTCA+GGG + chr2_2:53072818-53072837 None:intergenic 35.0%
GACTTTGTTGGTCAATTTCA+GGG + chr2_2:53072914-53072933 None:intergenic 35.0%
AGACTTTGTTGGTCAATTTC+AGG + chr2_2:53072915-53072934 None:intergenic 35.0%
ACCAACAAAGTCTACATTCA+GGG - chr2_2:53072922-53072941 Msa0257340:three_prime_UTR 35.0%
TAGGAAAAAAATTAGGGCCA+AGG - chr2_2:53073215-53073234 Msa0257340:three_prime_UTR 35.0%
! AAAATTAGGGCCAAGGATTT+TGG - chr2_2:53073222-53073241 Msa0257340:three_prime_UTR 35.0%
! AAATTAGGGCCAAGGATTTT+GGG - chr2_2:53073223-53073242 Msa0257340:three_prime_UTR 35.0%
GCAATGATGAACTAAAAGGA+AGG - chr2_2:53073418-53073437 Msa0257340:three_prime_UTR 35.0%
AGAGTTCATGGTTCAAATGA+AGG - chr2_2:53073464-53073483 Msa0257340:three_prime_UTR 35.0%
TTCATGGTTCAAATGAAGGA+AGG - chr2_2:53073468-53073487 Msa0257340:three_prime_UTR 35.0%
ACTGTCCAATTTCAATCCAA+CGG + chr2_2:53073609-53073628 None:intergenic 35.0%
GACTACACAGAATCCAAATT+TGG - chr2_2:53073681-53073700 Msa0257340:CDS 35.0%
CTGTTATTAGGTAACCCTTA+TGG - chr2_2:53073765-53073784 Msa0257340:CDS 35.0%
GGTAATAGGAATTGTCAACA+AGG + chr2_2:53073954-53073973 None:intergenic 35.0%
GCATGGGATAATAAGTCTTT+CGG + chr2_2:53074083-53074102 None:intergenic 35.0%
AAAGACTTATTATCCCATGC+AGG - chr2_2:53074083-53074102 Msa0257340:CDS 35.0%
!! AGGCATTACACCATTTTGAT+TGG - chr2_2:53074151-53074170 Msa0257340:CDS 35.0%
!! TTCTCCATTGCTTCTAAAAC+AGG + chr2_2:53074195-53074214 None:intergenic 35.0%
TGTTATTGCAGCAAAACTAC+AGG - chr2_2:53074287-53074306 Msa0257340:intron 35.0%
ATTCAGTGATGAACCACATT+CGG - chr2_2:53074328-53074347 Msa0257340:intron 35.0%
ATACATCTACCTGAGGTAAA+AGG - chr2_2:53074351-53074370 Msa0257340:intron 35.0%
TACATCTACCTGAGGTAAAA+GGG - chr2_2:53074352-53074371 Msa0257340:intron 35.0%
GTCATTGTTATAAGCATCAC+AGG + chr2_2:53074445-53074464 None:intergenic 35.0%
! GTTGTTTCCAAGTCTTAACA+AGG - chr2_2:53074479-53074498 Msa0257340:intron 35.0%
GACATGAATGGAAAAGTGAA+TGG - chr2_2:53074561-53074580 Msa0257340:CDS 35.0%
!!! CATGAACATTTTTGACTTGG+AGG - chr2_2:53074710-53074729 Msa0257340:intron 35.0%
ACCAAGCTCTTTCAAACAAA+AGG + chr2_2:53074864-53074883 None:intergenic 35.0%
TTAAATCAGACCTGAGTTTG+TGG - chr2_2:53075100-53075119 Msa0257340:intron 35.0%
TCCATGTTATAGATCCTTTC+TGG - chr2_2:53075169-53075188 Msa0257340:intron 35.0%
TTCCAGAACTAAGATCATTG+TGG - chr2_2:53075298-53075317 Msa0257340:intron 35.0%
TGCAACATTAGAGCATGATA+GGG - chr2_2:53075360-53075379 Msa0257340:intron 35.0%
ATTAGAGCATGATAGGGAAA+AGG - chr2_2:53075366-53075385 Msa0257340:intron 35.0%
TAGTTCTTCTTCCACTCATT+AGG - chr2_2:53075454-53075473 Msa0257340:intron 35.0%
CATTGTTGTCTGTGTTATCA+TGG + chr2_2:53075484-53075503 None:intergenic 35.0%
ACAACAATGATATGGCATCA+TGG - chr2_2:53075495-53075514 Msa0257340:intron 35.0%
AGTTCAATGAAATGGTCCTT+TGG + chr2_2:53075729-53075748 None:intergenic 35.0%
CAGAGAACAACTTCATACAA+TGG - chr2_2:53075895-53075914 Msa0257340:intron 35.0%
! CTGATCTTCAAGGTATTAAC+AGG + chr2_2:53075969-53075988 None:intergenic 35.0%
CAACTAAGAACTGATCTTCA+AGG + chr2_2:53075979-53075998 None:intergenic 35.0%
TGTGACAGGGAAAAAGTAAT+TGG + chr2_2:53076010-53076029 None:intergenic 35.0%
TGGTTTCTTCATTCAAGGTT+AGG + chr2_2:53076131-53076150 None:intergenic 35.0%
TGGAATGTTCTTGTAGAAGA+AGG + chr2_2:53076168-53076187 None:intergenic 35.0%
!! TTTTAAGTGTGTGAGAGATG+GGG + chr2_2:53076208-53076227 None:intergenic 35.0%
GGGATATTGAGCAAAAGAAA+AGG + chr2_2:53076237-53076256 None:intergenic 35.0%
! AGTAACTTTGGTGATCTAAG+TGG + chr2_2:53076312-53076331 None:intergenic 35.0%
TTTGAGGAAGAGAGTAACTT+TGG + chr2_2:53076324-53076343 None:intergenic 35.0%
TTTGGATTCAACATAACCAC+TGG - chr2_2:53076351-53076370 Msa0257340:CDS 35.0%
!! AGAGAGTTCTAAATTGTCAG+TGG + chr2_2:53076409-53076428 None:intergenic 35.0%
! ACTGACAATTTAGAACTCTC+TGG - chr2_2:53076408-53076427 Msa0257340:CDS 35.0%
CAATGTCAATGTGTTCAACT+TGG - chr2_2:53076493-53076512 Msa0257340:exon 35.0%
! GGAGAACCTTTTCTTTTGAT+TGG - chr2_2:53076594-53076613 Msa0257340:five_prime_UTR 35.0%
!! ACTGGCTCTTGATATTTTTG+GGG + chr2_2:53076625-53076644 None:intergenic 35.0%
ACTGAAACAACCAAGATTTC+GGG + chr2_2:53076691-53076710 None:intergenic 35.0%
GTTATTGATAGGCTTCTCTA+AGG - chr2_2:53076737-53076756 Msa0257340:five_prime_UTR 35.0%
!! CTTCTCTAAGGTTGTTGAAA+GGG - chr2_2:53076749-53076768 Msa0257340:five_prime_UTR 35.0%
TTTGAGGGATGCATGATATA+TGG - chr2_2:53076877-53076896 Msa0257340:five_prime_UTR 35.0%
!! ATGTATGCATGATGATGGAT+TGG - chr2_2:53076962-53076981 Msa0257340:five_prime_UTR 35.0%
GGTACTTGGAGTGAAAATTC+AGG + chr2_2:53070926-53070945 None:intergenic 40.0%
TGACACACTCTCTCTATGTA+GGG + chr2_2:53070964-53070983 None:intergenic 40.0%
ATGACACACTCTCTCTATGT+AGG + chr2_2:53070965-53070984 None:intergenic 40.0%
CTTTCCCTCCTTCAAAATCA+AGG - chr2_2:53071120-53071139 Msa0257340:three_prime_UTR 40.0%
AAGAAGGAGGAGATGTTGTT+TGG + chr2_2:53071170-53071189 None:intergenic 40.0%
GCATGTCAAAATGGTGTTTG+AGG + chr2_2:53071249-53071268 None:intergenic 40.0%
CCTAACCTTGCTTAGCATTT+GGG + chr2_2:53071276-53071295 None:intergenic 40.0%
ACCTAACCTTGCTTAGCATT+TGG + chr2_2:53071277-53071296 None:intergenic 40.0%
AACTGCAAGAACTCATGTCA+AGG + chr2_2:53071354-53071373 None:intergenic 40.0%
ACAGTAACATGCCTCAAACT+TGG + chr2_2:53071553-53071572 None:intergenic 40.0%
AACTCTTTAAGTCCTTTGCC+TGG + chr2_2:53071580-53071599 None:intergenic 40.0%
CAAAACAAGTGCTCTACCAT+AGG - chr2_2:53071721-53071740 Msa0257340:three_prime_UTR 40.0%
!! TATGTCACATTTTGGCCCTA+AGG - chr2_2:53072088-53072107 Msa0257340:three_prime_UTR 40.0%
AAGCATGAACACATGTGTGA+AGG - chr2_2:53072139-53072158 Msa0257340:three_prime_UTR 40.0%
! ACGACTCCTTTTCCTATTCA+GGG + chr2_2:53072757-53072776 None:intergenic 40.0%
GACTAACAGAGTCTACATTC+AGG + chr2_2:53072819-53072838 None:intergenic 40.0%
ACTAACAGAGTCTGCATTCA+AGG + chr2_2:53072850-53072869 None:intergenic 40.0%
GACTAACAGAGTCTACATTC+AGG + chr2_2:53072819-53072838 None:intergenic 40.0%
GACCAACAAAGTCTACATTC+AGG - chr2_2:53072921-53072940 Msa0257340:three_prime_UTR 40.0%
TCCCTGAATGTAGACTTTGT+TGG + chr2_2:53072926-53072945 None:intergenic 40.0%
TTCATATGGTATCCCAAACG+TGG - chr2_2:53073104-53073123 Msa0257340:three_prime_UTR 40.0%
ACCAAAATGTGACCACGTTT+GGG + chr2_2:53073119-53073138 None:intergenic 40.0%
AACCAAAATGTGACCACGTT+TGG + chr2_2:53073120-53073139 None:intergenic 40.0%
ATGGTTCAAATGAAGGAAGG+TGG - chr2_2:53073471-53073490 Msa0257340:three_prime_UTR 40.0%
TGTGACCGTTGGATTGAAAT+TGG - chr2_2:53073601-53073620 Msa0257340:CDS 40.0%
TTGGACAGTTCTCAATCCAA+CGG - chr2_2:53073620-53073639 Msa0257340:CDS 40.0%
ACCAATAGCACGAATTCAAG+CGG + chr2_2:53073661-53073680 None:intergenic 40.0%
AGGTAACCCTTATGGAACAA+AGG - chr2_2:53073773-53073792 Msa0257340:CDS 40.0%
CCTAGTCCTTTGTTCCATAA+GGG + chr2_2:53073782-53073801 None:intergenic 40.0%
ACCTAGTCCTTTGTTCCATA+AGG + chr2_2:53073783-53073802 None:intergenic 40.0%
TATGGAACAAAGGACTAGGT+TGG - chr2_2:53073783-53073802 Msa0257340:CDS 40.0%
CATGGCGATATAGATACTCT+TGG + chr2_2:53073816-53073835 None:intergenic 40.0%
TCAATCACAGCAGGTGATAA+AGG + chr2_2:53074126-53074145 None:intergenic 40.0%
TTTATCACCTGCTGTGATTG+AGG - chr2_2:53074125-53074144 Msa0257340:CDS 40.0%
!!! TGATTGGTTTTCAAAGGGGA+AGG - chr2_2:53074167-53074186 Msa0257340:CDS 40.0%
AGCAATGGAGAAAGATCAGA+AGG - chr2_2:53074203-53074222 Msa0257340:CDS 40.0%
GTTTCCAAGTCTTAACAAGG+TGG - chr2_2:53074482-53074501 Msa0257340:intron 40.0%
AAGACCACCTTGTTAAGACT+TGG + chr2_2:53074489-53074508 None:intergenic 40.0%
AAACTGATCTTACACCTCTG+TGG - chr2_2:53074532-53074551 Msa0257340:intron 40.0%
AACTGATCTTACACCTCTGT+GGG - chr2_2:53074533-53074552 Msa0257340:intron 40.0%
TCAATCCCAATGAATGTGCT+TGG - chr2_2:53074679-53074698 Msa0257340:intron 40.0%
CAATCCCAATGAATGTGCTT+GGG - chr2_2:53074680-53074699 Msa0257340:intron 40.0%
GTCAAAAATGTTCATGCCGT+AGG + chr2_2:53074706-53074725 None:intergenic 40.0%
!! CGGCATGAACATTTTTGACT+TGG - chr2_2:53074707-53074726 Msa0257340:intron 40.0%
!!! ACATTTTTGACTTGGAGGCT+TGG - chr2_2:53074715-53074734 Msa0257340:intron 40.0%
! ATATCATCATTGGGTTGCAC+AGG - chr2_2:53074761-53074780 Msa0257340:CDS 40.0%
!! GCCTTTTGTTTGAAAGAGCT+TGG - chr2_2:53074860-53074879 Msa0257340:intron 40.0%
TGAAATGCTATCAATCCAGG+AGG + chr2_2:53075141-53075160 None:intergenic 40.0%
CCATGAAATGCTATCAATCC+AGG + chr2_2:53075144-53075163 None:intergenic 40.0%
! CCTGGATTGATAGCATTTCA+TGG - chr2_2:53075141-53075160 Msa0257340:intron 40.0%
GCCAGAAAGGATCTATAACA+TGG + chr2_2:53075173-53075192 None:intergenic 40.0%
AATCCAAGCATATGCCAGAA+AGG + chr2_2:53075186-53075205 None:intergenic 40.0%
! TTTCTGGCATATGCTTGGAT+TGG - chr2_2:53075185-53075204 Msa0257340:intron 40.0%
TTCTGGCATATGCTTGGATT+GGG - chr2_2:53075186-53075205 Msa0257340:intron 40.0%
! TATGCTTGGATTGGGATATC+AGG - chr2_2:53075194-53075213 Msa0257340:intron 40.0%
GTCCACAATGATCTTAGTTC+TGG + chr2_2:53075303-53075322 None:intergenic 40.0%
CTGCAACATTAGAGCATGAT+AGG - chr2_2:53075359-53075378 Msa0257340:intron 40.0%
AACTCGTAGTTGAGAAGTCA+TGG + chr2_2:53075392-53075411 None:intergenic 40.0%
GTTGTCTGTGTTATCATGGA+AGG + chr2_2:53075480-53075499 None:intergenic 40.0%
TAAAAAAACCTGCGTCCTCA+AGG - chr2_2:53075661-53075680 Msa0257340:intron 40.0%
!! GATTGGTGTTGAATGTGACA+GGG + chr2_2:53076023-53076042 None:intergenic 40.0%
AAGTCTGCGAAGTTCATCAA+GGG + chr2_2:53076045-53076064 None:intergenic 40.0%
AACTTCGCAGACTTCGTTAT+CGG - chr2_2:53076051-53076070 Msa0257340:intron 40.0%
ATCTCAACTTCGCCAATAGT+TGG - chr2_2:53076105-53076124 Msa0257340:intron 40.0%
TTCAAGGTTAGGCCAACTAT+TGG + chr2_2:53076120-53076139 None:intergenic 40.0%
GAAGGTGGTTTCTTCATTCA+AGG + chr2_2:53076136-53076155 None:intergenic 40.0%
AGAAGAAGGTGAGGAAATGA+AGG + chr2_2:53076154-53076173 None:intergenic 40.0%
TGTTCTTGTAGAAGAAGGTG+AGG + chr2_2:53076163-53076182 None:intergenic 40.0%
TTATGGGATTGGAGGTAAGA+GGG + chr2_2:53076257-53076276 None:intergenic 40.0%
TTTATGGGATTGGAGGTAAG+AGG + chr2_2:53076258-53076277 None:intergenic 40.0%
! TCTTCCTCAAATGCCCATTT+TGG - chr2_2:53076333-53076352 Msa0257340:CDS 40.0%
GAATCCAAAATGGGCATTTG+AGG + chr2_2:53076340-53076359 None:intergenic 40.0%
!! TTCAACATAACCACTGGCTT+TGG - chr2_2:53076357-53076376 Msa0257340:CDS 40.0%
! TGCTTTTAATCCAAAGCCAG+TGG + chr2_2:53076370-53076389 None:intergenic 40.0%
! TTCTGATGTGGCAGTGTTTT+TGG + chr2_2:53076436-53076455 None:intergenic 40.0%
GCCAGTTTACAAACTGAATC+CGG - chr2_2:53076639-53076658 Msa0257340:five_prime_UTR 40.0%
!! AAGATTTCGGGTTGAAATCC+CGG + chr2_2:53076679-53076698 None:intergenic 40.0%
!! GCTTCTCTAAGGTTGTTGAA+AGG - chr2_2:53076748-53076767 Msa0257340:five_prime_UTR 40.0%
! GGTTGTTGAAAGGGATGTTT+TGG - chr2_2:53076758-53076777 Msa0257340:five_prime_UTR 40.0%
!!! GGATGTTTTGGCTTGAAGTA+TGG - chr2_2:53076770-53076789 Msa0257340:five_prime_UTR 40.0%
! TATGGCATCTTCCTTTGAGA+TGG - chr2_2:53076788-53076807 Msa0257340:five_prime_UTR 40.0%
!! ATGGCATCTTCCTTTGAGAT+GGG - chr2_2:53076789-53076808 Msa0257340:five_prime_UTR 40.0%
TGTGCATGTATGCATGATGA+TGG - chr2_2:53076957-53076976 Msa0257340:five_prime_UTR 40.0%
CTCTATGTAGGGTGTAGTTG+AGG + chr2_2:53070953-53070972 None:intergenic 45.0%
!! GTTTGGTGTGTGTCTATGCT+TGG + chr2_2:53071067-53071086 None:intergenic 45.0%
GAGACATTGGACTAAGAAGG+AGG + chr2_2:53071183-53071202 None:intergenic 45.0%
TTGGGTCAGGCATGTCAAAA+TGG + chr2_2:53071258-53071277 None:intergenic 45.0%
CCCAAATGCTAAGCAAGGTT+AGG - chr2_2:53071273-53071292 Msa0257340:three_prime_UTR 45.0%
CTTTAAGTCCTTTGCCTGGA+AGG + chr2_2:53071576-53071595 None:intergenic 45.0%
TCAAAGTGAAAGTTGCGTCG+AGG - chr2_2:53071602-53071621 Msa0257340:three_prime_UTR 45.0%
!! GAAAAGAGGGAGAGTACCTA+TGG + chr2_2:53071740-53071759 None:intergenic 45.0%
CGTGTGTGAGAGAGAAAAGA+GGG + chr2_2:53071753-53071772 None:intergenic 45.0%
GCTTGTGACTCTGTCTATGT+AGG + chr2_2:53072123-53072142 None:intergenic 45.0%
CATGAACACATGTGTGAAGG+TGG - chr2_2:53072142-53072161 Msa0257340:three_prime_UTR 45.0%
CACATGTGTGAAGGTGGATA+AGG - chr2_2:53072148-53072167 Msa0257340:three_prime_UTR 45.0%
! GACGACTCCTTTTCCTATTC+AGG + chr2_2:53072758-53072777 None:intergenic 45.0%
! TCCCAAACGTGGTCACATTT+TGG - chr2_2:53073115-53073134 Msa0257340:three_prime_UTR 45.0%
ATCAGCACATTTGTGACCGT+TGG - chr2_2:53073590-53073609 Msa0257340:exon 45.0%
AATTCAAGCGGTCAGCACAT+CGG + chr2_2:53073649-53073668 None:intergenic 45.0%
ACCGCTTGAATTCGTGCTAT+TGG - chr2_2:53073657-53073676 Msa0257340:CDS 45.0%
CCCTTATGGAACAAAGGACT+AGG - chr2_2:53073779-53073798 Msa0257340:CDS 45.0%
! GTATGCTGCTTGATGCTACA+TGG + chr2_2:53073834-53073853 None:intergenic 45.0%
TAGGAATTGTCAACAAGGGC+AGG + chr2_2:53073949-53073968 None:intergenic 45.0%
! AGATAATGTGCTTGCTGCCT+CGG - chr2_2:53073990-53074009 Msa0257340:CDS 45.0%
CTTATTATCCCATGCAGGCT+TGG - chr2_2:53074088-53074107 Msa0257340:CDS 45.0%
AATGAGAACCAAGCCTGCAT+GGG + chr2_2:53074099-53074118 None:intergenic 45.0%
!!! GGTGCCTGTTTTAGAAGCAA+TGG - chr2_2:53074188-53074207 Msa0257340:CDS 45.0%
TGGAGAAAGATCAGAAGGTG+CGG - chr2_2:53074208-53074227 Msa0257340:CDS 45.0%
TCAGTTTAGGGGAGGTTCAT+CGG - chr2_2:53074233-53074252 Msa0257340:intron 45.0%
CAGGTAGATGTATCCGAATG+TGG + chr2_2:53074344-53074363 None:intergenic 45.0%
CATTCGGATACATCTACCTG+AGG - chr2_2:53074344-53074363 Msa0257340:intron 45.0%
GTATCACAATGTCATCGTCG+AGG + chr2_2:53074512-53074531 None:intergenic 45.0%
TTCATGTCAATGTCCCACAG+AGG + chr2_2:53074549-53074568 None:intergenic 45.0%
CTGTGGGACATTGACATGAA+TGG - chr2_2:53074549-53074568 Msa0257340:CDS 45.0%
TGGAAAAGTGAATGGAGCAG+TGG - chr2_2:53074569-53074588 Msa0257340:CDS 45.0%
TAGGCCCAAGCACATTCATT+GGG + chr2_2:53074687-53074706 None:intergenic 45.0%
AATGAATGTGCTTGGGCCTA+CGG - chr2_2:53074687-53074706 Msa0257340:intron 45.0%
!!! TTTTTGACTTGGAGGCTTGG+AGG - chr2_2:53074718-53074737 Msa0257340:intron 45.0%
CAACTTCAATTGTTGCGCCA+AGG - chr2_2:53074922-53074941 Msa0257340:intron 45.0%
! GATCCTTTCTGGCATATGCT+TGG - chr2_2:53075180-53075199 Msa0257340:intron 45.0%
GTTGACGATGTTGAGAATGC+TGG - chr2_2:53075228-53075247 Msa0257340:intron 45.0%
TGTCATCCACTTCAATGGCA+GGG - chr2_2:53075251-53075270 Msa0257340:intron 45.0%
GGAAAAGCTATGTCTAGCCA+TGG + chr2_2:53075282-53075301 None:intergenic 45.0%
ATCATGGAAGGCCTAATGAG+TGG + chr2_2:53075468-53075487 None:intergenic 45.0%
TTATGAAACCTTGAGGACGC+AGG + chr2_2:53075672-53075691 None:intergenic 45.0%
!! GGATTGGTGTTGAATGTGAC+AGG + chr2_2:53076024-53076043 None:intergenic 45.0%
TGCGAAGTTCATCAAGGGAT+TGG + chr2_2:53076040-53076059 None:intergenic 45.0%
GAAGTCTGCGAAGTTCATCA+AGG + chr2_2:53076046-53076065 None:intergenic 45.0%
AGAAGGTGAGGAAATGAAGG+TGG + chr2_2:53076151-53076170 None:intergenic 45.0%
GCCGGATTCAGTTTGTAAAC+TGG + chr2_2:53076643-53076662 None:intergenic 45.0%
GGGATTTCAACCCGAAATCT+TGG - chr2_2:53076678-53076697 Msa0257340:five_prime_UTR 45.0%
!! CATCTTCCTTTGAGATGGGT+GGG - chr2_2:53076793-53076812 Msa0257340:five_prime_UTR 45.0%
! TGGATGTGGATGTAGCTTTG+AGG - chr2_2:53076841-53076860 Msa0257340:five_prime_UTR 45.0%
!! GGATGTGGATGTAGCTTTGA+GGG - chr2_2:53076842-53076861 Msa0257340:five_prime_UTR 45.0%
!! GATGTGGATGTAGCTTTGAG+GGG - chr2_2:53076843-53076862 Msa0257340:five_prime_UTR 45.0%
!! TAGCTTTGAGGGGAACAGTA+GGG - chr2_2:53076853-53076872 Msa0257340:five_prime_UTR 45.0%
!!! AATATATTTTATTTTTTGAA+GGG + chr2_2:53071220-53071239 None:intergenic 5.0%
!!! TAATATATTTTATTTTTTGA+AGG + chr2_2:53071221-53071240 None:intergenic 5.0%
!! AATTGAAAAATTTAATAAAA+TGG + chr2_2:53073306-53073325 None:intergenic 5.0%
GTAGTTGAGGACGTGGTACT+TGG + chr2_2:53070940-53070959 None:intergenic 50.0%
CCTTGCTTAGCATTTGGGTC+AGG + chr2_2:53071271-53071290 None:intergenic 50.0%
CCTGACCCAAATGCTAAGCA+AGG - chr2_2:53071268-53071287 Msa0257340:three_prime_UTR 50.0%
AGGCATGTTACTGTCCTTCC+AGG - chr2_2:53071559-53071578 Msa0257340:three_prime_UTR 50.0%
GTTACTGTCCTTCCAGGCAA+AGG - chr2_2:53071565-53071584 Msa0257340:three_prime_UTR 50.0%
! ACAGCTGTGGATGGCATTGA+TGG - chr2_2:53071697-53071716 Msa0257340:three_prime_UTR 50.0%
GCGTGTGTGAGAGAGAAAAG+AGG + chr2_2:53071754-53071773 None:intergenic 50.0%
ACTTGGACCTTGCAGTAGCA+GGG + chr2_2:53072376-53072395 None:intergenic 50.0%
GGTCGTCTACCCAAAATCCT+TGG + chr2_2:53073235-53073254 None:intergenic 50.0%
TGACTGCAGGGGAAAAGAAG+AGG + chr2_2:53073549-53073568 None:intergenic 50.0%
GGCAGCAAGCACATTATCTG+AGG + chr2_2:53073989-53074008 None:intergenic 50.0%
GAGTGATGTTGCAACAACCG+AGG + chr2_2:53074010-53074029 None:intergenic 50.0%
CAATGAGAACCAAGCCTGCA+TGG + chr2_2:53074100-53074119 None:intergenic 50.0%
ACCTGCTGTGATTGAGGTCA+AGG - chr2_2:53074131-53074150 Msa0257340:CDS 50.0%
! AGAAGGTGCGGTCTCAGTTT+AGG - chr2_2:53074220-53074239 Msa0257340:CDS 50.0%
! GAAGGTGCGGTCTCAGTTTA+GGG - chr2_2:53074221-53074240 Msa0257340:CDS 50.0%
AAGGTGCGGTCTCAGTTTAG+GGG - chr2_2:53074222-53074241 Msa0257340:intron 50.0%
! CCAGCTATCCCTTTTACCTC+AGG + chr2_2:53074363-53074382 None:intergenic 50.0%
CCTGAGGTAAAAGGGATAGC+TGG - chr2_2:53074360-53074379 Msa0257340:intron 50.0%
GGAGCAGTGGAAACATGCAA+TGG - chr2_2:53074582-53074601 Msa0257340:CDS 50.0%
GTAGGCCCAAGCACATTCAT+TGG + chr2_2:53074688-53074707 None:intergenic 50.0%
GCCTGTTAGGTCTAGTCACA+TGG - chr2_2:53074896-53074915 Msa0257340:intron 50.0%
GCCATGTGACTAGACCTAAC+AGG + chr2_2:53074900-53074919 None:intergenic 50.0%
TTATGGTAGAAGGGGAGCCT+TGG + chr2_2:53074942-53074961 None:intergenic 50.0%
ACCTGAGTTTGTGGCAGCTA+GGG - chr2_2:53075109-53075128 Msa0257340:intron 50.0%
!! GCTGGTGTCATCCACTTCAA+TGG - chr2_2:53075246-53075265 Msa0257340:intron 50.0%
GTGTCATCCACTTCAATGGC+AGG - chr2_2:53075250-53075269 Msa0257340:intron 50.0%
GGGTTGTGAGTGCAGAGAAA+TGG + chr2_2:53076188-53076207 None:intergenic 50.0%
!! GCATCTTCCTTTGAGATGGG+TGG - chr2_2:53076792-53076811 Msa0257340:five_prime_UTR 50.0%
!! TCCTTTGAGATGGGTGGGTT+AGG - chr2_2:53076798-53076817 Msa0257340:five_prime_UTR 50.0%
!! CCTTTGAGATGGGTGGGTTA+GGG - chr2_2:53076799-53076818 Msa0257340:five_prime_UTR 50.0%
!! CTTTGAGATGGGTGGGTTAG+GGG - chr2_2:53076800-53076819 Msa0257340:five_prime_UTR 50.0%
!! GTAGCTTTGAGGGGAACAGT+AGG - chr2_2:53076852-53076871 Msa0257340:five_prime_UTR 50.0%
! AGGGGAACAGTAGGGTTTTG+AGG - chr2_2:53076861-53076880 Msa0257340:five_prime_UTR 50.0%
!! GGGGAACAGTAGGGTTTTGA+GGG - chr2_2:53076862-53076881 Msa0257340:five_prime_UTR 50.0%
GTAGGGTGTAGTTGAGGACG+TGG + chr2_2:53070947-53070966 None:intergenic 55.0%
! CGTCGAGGCGCCTTTCTTAT+AGG - chr2_2:53071617-53071636 Msa0257340:three_prime_UTR 55.0%
TTGCGCGCACACACATAGTC+AGG - chr2_2:53071778-53071797 Msa0257340:three_prime_UTR 55.0%
ACCTTGCAGTAGCAGGGTGA+GGG + chr2_2:53072370-53072389 None:intergenic 55.0%
CACTTGGACCTTGCAGTAGC+AGG + chr2_2:53072377-53072396 None:intergenic 55.0%
CGTGCAAACAGTGACTGCAG+GGG + chr2_2:53073560-53073579 None:intergenic 55.0%
GCGTGCAAACAGTGACTGCA+GGG + chr2_2:53073561-53073580 None:intergenic 55.0%
TGCGTGCAAACAGTGACTGC+AGG + chr2_2:53073562-53073581 None:intergenic 55.0%
GCAGGAACTAGTTCCGCAGA+CGG + chr2_2:53073931-53073950 None:intergenic 55.0%
GCCTTGACCTCAATCACAGC+AGG + chr2_2:53074135-53074154 None:intergenic 55.0%
!! TTGACTTGGAGGCTTGGAGG+AGG - chr2_2:53074721-53074740 Msa0257340:intron 55.0%
GACCTGAGTTTGTGGCAGCT+AGG - chr2_2:53075108-53075127 Msa0257340:intron 55.0%
TCCCTAGCTGCCACAAACTC+AGG + chr2_2:53075113-53075132 None:intergenic 55.0%
CAGCTAGGGACATTACCTCC+TGG - chr2_2:53075123-53075142 Msa0257340:intron 55.0%
GCTTTGCCCTGCCATTGAAG+TGG + chr2_2:53075260-53075279 None:intergenic 55.0%
TCAATGGCAGGGCAAAGCCA+TGG - chr2_2:53075262-53075281 Msa0257340:intron 55.0%
CCCTAACCCACCCATCTCAA+AGG + chr2_2:53076802-53076821 None:intergenic 55.0%
! TGGGTTAGGGGAAGAGAGTG+AGG - chr2_2:53076812-53076831 Msa0257340:five_prime_UTR 55.0%
TAGGGGAAGAGAGTGAGGAC+TGG - chr2_2:53076817-53076836 Msa0257340:five_prime_UTR 55.0%
GGAAGAGAGTGAGGACTGGA+TGG - chr2_2:53076821-53076840 Msa0257340:five_prime_UTR 55.0%
GAGTGAGGACTGGATGGATG+TGG - chr2_2:53076827-53076846 Msa0257340:five_prime_UTR 55.0%
TCCCTCACCCTGCTACTGCA+AGG - chr2_2:53072366-53072385 Msa0257340:three_prime_UTR 60.0%
GACCTTGCAGTAGCAGGGTG+AGG + chr2_2:53072371-53072390 None:intergenic 60.0%
GTCAGCACATCGGTGACCGT+TGG + chr2_2:53073639-53073658 None:intergenic 60.0%
! TAGGCGTGCTGCTGCGTTGT+TGG + chr2_2:53073902-53073921 None:intergenic 60.0%
ACGCCTACAGCTACCGTCTG+CGG - chr2_2:53073915-53073934 Msa0257340:CDS 60.0%
GTTCCGCAGACGGTAGCTGT+AGG + chr2_2:53073921-53073940 None:intergenic 60.0%
GTGCGGTCTCAGTTTAGGGG+AGG - chr2_2:53074225-53074244 Msa0257340:intron 60.0%
TTGCGCGACTCGAGCCTGTT+AGG - chr2_2:53074883-53074902 Msa0257340:intron 60.0%
TCCGGCGAGTCATCGATGAC+CGG - chr2_2:53076657-53076676 Msa0257340:five_prime_UTR 60.0%
CCCGGTCATCGATGACTCGC+CGG + chr2_2:53076661-53076680 None:intergenic 65.0%
CCGGCGAGTCATCGATGACC+GGG - chr2_2:53076658-53076677 Msa0257340:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 53070857 53077158 53070857 ID=Msa0257340;Name=Msa0257340
chr2_2 mRNA 53070857 53077158 53070857 ID=Msa0257340-mRNA-1;Parent=Msa0257340;Name=Msa0257340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=648|0.33|0.5|1|0.33|0.5|4|2736|342
chr2_2 exon 53070857 53074240 53070857 ID=Msa0257340-mRNA-1:exon:15941;Parent=Msa0257340-mRNA-1
chr2_2 exon 53074542 53074637 53074542 ID=Msa0257340-mRNA-1:exon:15940;Parent=Msa0257340-mRNA-1
chr2_2 exon 53074751 53074797 53074751 ID=Msa0257340-mRNA-1:exon:15939;Parent=Msa0257340-mRNA-1
chr2_2 exon 53076273 53077158 53076273 ID=Msa0257340-mRNA-1:exon:15938;Parent=Msa0257340-mRNA-1
chr2_2 five_prime_UTR 53076511 53077158 53076511 ID=Msa0257340-mRNA-1:five_prime_utr;Parent=Msa0257340-mRNA-1
chr2_2 CDS 53076273 53076510 53076273 ID=Msa0257340-mRNA-1:cds;Parent=Msa0257340-mRNA-1
chr2_2 CDS 53074751 53074797 53074751 ID=Msa0257340-mRNA-1:cds;Parent=Msa0257340-mRNA-1
chr2_2 CDS 53074542 53074637 53074542 ID=Msa0257340-mRNA-1:cds;Parent=Msa0257340-mRNA-1
chr2_2 CDS 53073593 53074240 53073593 ID=Msa0257340-mRNA-1:cds;Parent=Msa0257340-mRNA-1
chr2_2 three_prime_UTR 53070857 53073592 53070857 ID=Msa0257340-mRNA-1:three_prime_utr;Parent=Msa0257340-mRNA-1
Gene Sequence

>Msa0257340

ATGTCTATTTTGGATTGGAACAATAAAATGCAGCTGCATATATCTCCAAGTTTGAGGCATGTTACTGTCCTTCCAGGCAAAGGACTTAAAGAGTTTATCAAAGTGAAAGTTGCGTCGAGGCGCCTTTCTTATAGGATGCTCTTCTATTCACTTTTGTTCTTCACTTTTCTTCTGAGGTTTGTGTTTGTTTTAACAGCTGTGGATGGCATTGATGGACAAAACAAGTGCTCTACCATAGGAAAAAAATTAGGGCCAAGGATTTTGGGTAGACGACCTGAATCAACTGTCCCAGAAGTGATATACCAAACTTTAGATGAACCAATTGGCAATGATGAACTAAAAGGAAGGTTTGATATTCCACAAACTTTAGAAGAGTTCATGGTAACCCTTATGGAACAAAGGACTAGGTTGGCCAAAATCCAAGAGTATCTATATCGCCATGTAGCATCAAGCAGCATACCGAAACAACTTCATTGTCTTGACTTGAGATTAGCACATGAGCATACCAACAACGCAGCAGCACGCCTACAGCTACCGTCTGCGGAACTAGTTCCTGCCCTTGTTGACAATTCCTATTACCATTTTGTTTTAGCCTCAGATAATGTGCTTGCTGCCTCGGTTGTTGCAACATCACTCGTTCGTAACTGTTTACGACCTAATAAGGTTGTTATACACATAATTACAGACCGAAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCATCCTTTATCACCTGCTGTGATTGAGGTCAAGGCATTACACCATTTTGATTGGTTTTCAAAGGGGAAGGTGCCTGTTTTAGAAGCAATGGAGAAAGATCAGAAGGTGCGGTCTCAGTTTAGGGGAGGTTCATCGGCTATAGTTGCGAATACATCTGAGAAGCCAAATGTTATTGCAGCAAAACTACAGGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATTCGGATACATCTACCTGAGGTAAAAGGGATAGCTGGCATAGCAAGTAAATCATTTTTGTGTTTTTATAGCTTATAA
Protein sequence

>Msa0257340

MSILDWNNKMQLHISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGQNKCSTIGKKLGPRILGRRPESTVPEVIYQTLDEPIGNDELKGRFDIPQTLEEFMVTLMEQRTRLAKIQEYLYRHVASSSIPKQLHCLDLRLAHEHTNNAAARLQLPSAELVPALVDNSYYHFVLASDNVLAASVVATSLVRNCLRPNKVVIHIITDRKTYYPMQAWFSLHPLSPAVIEVKALHHFDWFSKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTSEKPNVIAAKLQALSPKYNSVMNHIRIHLPEVKGIAGIASKSFLCFYSL*