AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0284980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0284980 MtrunA17_Chr2g0301081 99.625 267 0 1 1 266 1 267 0.0 538
Msa0284980 MtrunA17_Chr8g0345631 67.281 217 71 0 48 264 50 266 3.84e-106 308
Msa0284980 MtrunA17_Chr3g0092091 51.741 201 91 2 64 264 56 250 1.03e-67 210
Msa0284980 MtrunA17_Chr3g0133901 42.066 271 143 5 1 265 2 264 1.06e-57 185
Msa0284980 MtrunA17_Chr5g0448421 39.286 280 137 10 5 263 7 274 1.24e-49 164
Msa0284980 MtrunA17_Chr5g0448411 39.576 283 130 11 5 263 7 272 1.57e-49 164
Msa0284980 MtrunA17_Chr2g0279001 45.745 188 69 5 71 236 73 249 1.45e-40 140
Msa0284980 MtrunA17_Chr6g0462031 40.488 205 94 7 64 259 49 234 3.54e-39 136
Msa0284980 MtrunA17_Chr4g0006181 35.000 260 91 7 60 265 111 346 1.44e-38 137
Msa0284980 MtrunA17_Chr6g0453141 36.842 247 118 10 40 265 31 260 4.55e-34 124
Msa0284980 MtrunA17_Chr5g0447531 34.074 270 139 11 3 254 1 249 5.80e-34 124
Msa0284980 MtrunA17_Chr6g0453151 36.437 247 119 10 40 265 98 327 1.13e-33 124
Msa0284980 MtrunA17_Chr4g0051941 36.290 248 119 11 40 265 31 261 1.52e-33 122
Msa0284980 MtrunA17_Chr1g0157481 33.725 255 132 7 39 265 84 329 3.99e-33 123
Msa0284980 MtrunA17_Chr6g0476641 35.135 222 113 7 59 264 74 280 5.79e-33 121
Msa0284980 MtrunA17_Chr6g0453181 36.283 226 108 9 59 265 52 260 6.45e-32 118
Msa0284980 MtrunA17_Chr6g0453161 36.437 247 119 10 40 265 33 262 1.17e-31 122
Msa0284980 MtrunA17_Chr6g0453161 35.223 247 122 10 40 265 298 527 2.29e-30 118
Msa0284980 MtrunA17_Chr2g0318521 35.909 220 97 7 59 254 49 248 1.95e-30 114
Msa0284980 MtrunA17_Chr3g0113311 31.381 239 86 7 60 244 56 270 4.51e-24 97.8
Msa0284980 MtrunA17_Chr6g0464511 34.872 195 93 7 71 265 47 207 1.55e-20 87.0
Msa0284980 MtrunA17_Chr2g0296081 45.679 81 38 2 186 266 30 104 3.90e-15 69.7
Msa0284980 MtrunA17_Chr6g0453171 40.196 102 45 4 157 258 1 86 2.88e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0284980 AT1G19150.1 75.610 246 59 1 20 265 25 269 3.15e-140 395
Msa0284980 AT3G61470.1 68.932 206 64 0 59 264 50 255 1.16e-103 302
Msa0284980 AT3G47470.1 50.746 201 93 2 64 264 57 251 2.96e-67 209
Msa0284980 AT1G45474.2 44.206 233 121 5 38 265 26 254 5.29e-55 178
Msa0284980 AT1G45474.1 44.206 233 121 5 38 265 26 254 5.29e-55 178
Msa0284980 AT1G61520.3 43.556 225 100 7 60 263 52 270 2.03e-50 167
Msa0284980 AT1G61520.1 43.556 225 100 7 60 263 52 270 2.03e-50 167
Msa0284980 AT1G61520.2 42.788 208 92 7 77 263 14 215 6.13e-43 146
Msa0284980 AT3G54890.1 42.439 205 90 7 64 259 48 233 7.57e-42 144
Msa0284980 AT1G15820.1 37.838 259 125 9 1 236 1 246 2.43e-40 140
Msa0284980 AT5G28450.1 63.366 101 37 0 164 264 71 171 6.71e-40 136
Msa0284980 AT3G08940.2 32.203 295 119 8 28 265 16 286 1.05e-36 132
Msa0284980 AT5G01530.1 33.846 260 94 7 60 265 54 289 3.73e-36 130
Msa0284980 AT2G05100.1 33.681 288 138 11 3 265 1 260 4.89e-35 127
Msa0284980 AT2G05070.1 33.681 288 138 11 3 265 1 260 7.96e-35 126
Msa0284980 AT2G34430.1 35.772 246 122 9 40 265 32 261 1.26e-33 123
Msa0284980 AT1G76570.1 34.545 275 132 11 27 265 65 327 3.09e-33 124
Msa0284980 AT3G27690.1 36.916 214 101 8 59 254 53 250 3.14e-33 122
Msa0284980 AT4G10340.1 38.356 219 104 8 59 261 65 268 3.28e-33 122
Msa0284980 AT3G27690.2 36.916 214 101 8 59 254 85 282 3.65e-33 122
Msa0284980 AT2G34420.1 36.792 212 103 6 70 265 64 260 7.53e-33 121
Msa0284980 AT1G29920.1 37.327 217 104 7 65 265 62 262 1.17e-32 120
Msa0284980 AT1G29910.1 37.327 217 104 7 65 265 62 262 1.17e-32 120
Msa0284980 AT1G29930.1 37.327 217 104 7 65 265 62 262 1.23e-32 120
Msa0284980 AT5G54270.1 36.816 201 95 6 71 254 64 249 5.99e-30 113
Msa0284980 AT2G40100.1 32.645 242 84 8 60 247 55 271 1.05e-27 107
Msa0284980 AT3G54890.4 36.757 185 89 7 64 239 48 213 3.56e-27 105
Msa0284980 AT2G05100.2 32.308 260 123 11 3 237 1 232 2.12e-26 105
Msa0284980 AT3G54890.2 34.804 204 73 7 64 259 48 199 1.25e-22 92.8
Msa0284980 AT3G54890.3 45.455 110 51 2 64 164 48 157 2.07e-20 85.9
Msa0284980 AT3G08940.1 28.241 216 89 5 28 183 16 225 5.17e-14 70.1
Msa0284980 AT2G40100.2 34.400 125 33 2 60 141 55 173 5.34e-14 68.9

Find 95 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCCTTCCTGGTGATTT+TGG 0.118612 2_3:-24067790 Msa0284980:intron
CATTGTTCAACTAGCCTTAA+TGG 0.165083 2_3:-24067302 Msa0284980:CDS
TTTCCCTGTAATTTGTAATT+AGG 0.195230 2_3:-24066238 Msa0284980:three_prime_UTR
CTTCCCAATTGCAGCCTTCC+TGG 0.199772 2_3:-24067799 Msa0284980:intron
CTTGTGCAGGCTTTCACTTC+AGG 0.220137 2_3:-24066419 Msa0284980:intron
ATCACTTTATCTGTTATATA+TGG 0.237860 2_3:+24068482 None:intergenic
CTTTCCTAATTACAAATTAC+AGG 0.255241 2_3:+24066234 None:intergenic
CAGATCCAGAGTTGCTAAAA+TGG 0.292408 2_3:-24067480 Msa0284980:CDS
TACCTGCCATCAAGCCATTC+AGG 0.297044 2_3:+24068125 None:intergenic
ACCTTCAACCCAACCCATTA+AGG 0.308036 2_3:+24067288 None:intergenic
GTTTGGCCTATTTGGTAACT+TGG 0.311362 2_3:+24067219 None:intergenic
GGGAACCACAATGGCCTATC+TGG 0.315426 2_3:+24068161 None:intergenic
CTTCTTGTATTATATGAAAC+TGG 0.321965 2_3:-24066204 Msa0284980:three_prime_UTR
TTAGTCCTCAAAACCATTAC+AGG 0.332116 2_3:+24067124 None:intergenic
GGGTAACCAACATCTGGTTT+TGG 0.336620 2_3:+24067196 None:intergenic
GCCTTAATGGGTTGGGTTGA+AGG 0.347691 2_3:-24067289 Msa0284980:CDS
ATTGTTCAACTAGCCTTAAT+GGG 0.360647 2_3:-24067301 Msa0284980:CDS
CAGTGGCTGAATTTCTTACT+TGG 0.380299 2_3:+24068442 None:intergenic
GATGGCTCATCTTGCTGATC+CGG 0.383167 2_3:-24067011 Msa0284980:CDS
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2_3:-24067427 Msa0284980:CDS
TCAACTAGCCTTAATGGGTT+GGG 0.388339 2_3:-24067296 Msa0284980:CDS
TTGAGCCCAAGTTACCAAAT+AGG 0.388379 2_3:-24067225 Msa0284980:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2_3:-24067109 Msa0284980:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2_3:-24067436 Msa0284980:CDS
TTGTGCAGGCTTTCACTTCA+GGG 0.409776 2_3:-24066418 Msa0284980:intron
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2_3:-24068139 Msa0284980:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2_3:-24068131 Msa0284980:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2_3:-24067029 Msa0284980:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2_3:+24068404 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2_3:+24067025 None:intergenic
ATGCAGAGAAATATGTCAAA+AGG 0.430272 2_3:-24068294 Msa0284980:intron
GGATCAAACCATAGCCCTCC+AGG 0.434665 2_3:+24067175 None:intergenic
TTCAGGGTAGTGCTATGGTT+TGG 0.439986 2_3:-24066402 Msa0284980:exon
GAACAACATCAACAACTTCA+TGG 0.441276 2_3:-24068259 Msa0284980:CDS
ACTACCCGGGTTAACGATAT+CGG 0.444821 2_3:+24067255 None:intergenic
TTGGTTACCCTGGAGGGCTA+TGG 0.446317 2_3:-24067183 Msa0284980:CDS
TTCACTTCAGGGTAGTGCTA+TGG 0.448525 2_3:-24066407 Msa0284980:exon
CTCAAAACCATTACAGGCTC+AGG 0.461055 2_3:+24067130 None:intergenic
TTCAACTAGCCTTAATGGGT+TGG 0.465567 2_3:-24067297 Msa0284980:CDS
TTTGGCCTATTTGGTAACTT+GGG 0.471715 2_3:+24067220 None:intergenic
ATGGCTCATCTTGCTGATCC+GGG 0.473722 2_3:-24067010 Msa0284980:CDS
TATCTGTTATATATGGATGA+TGG 0.477805 2_3:+24068489 None:intergenic
GTTGGGTTGAAGGTCGAAGA+TGG 0.481490 2_3:-24067279 Msa0284980:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2_3:+24068140 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2_3:-24068127 Msa0284980:intron
TGAACAATGAAAAGTGTTGT+TGG 0.488497 2_3:+24067316 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2_3:-24067157 Msa0284980:CDS
AGGTTCACCTGAGCCTGTAA+TGG 0.492772 2_3:-24067137 Msa0284980:CDS
GCTGAATTTCTTACTTGGAG+TGG 0.494254 2_3:+24068447 None:intergenic
GATAGGCCATTGTGGTTCCC+TGG 0.495533 2_3:-24068158 Msa0284980:CDS
AAATTCAGCCACTGCAGTAA+TGG 0.498989 2_3:-24068433 Msa0284980:exon
CCTCCAGGGTAACCAACATC+TGG 0.500898 2_3:+24067190 None:intergenic
GTGAACCACTTCCTCCAGAT+AGG 0.506478 2_3:-24068175 Msa0284980:CDS
GAACAATGAAAAGTGTTGTT+GGG 0.509421 2_3:+24067317 None:intergenic
TTGGGTTGAAGGTCGAAGAT+GGG 0.512458 2_3:-24067278 Msa0284980:CDS
ACAATTAGAAATGCAAAGAA+AGG 0.515819 2_3:-24068212 Msa0284980:CDS
AGAACTAATGCATGCAAGAT+GGG 0.516375 2_3:-24067446 Msa0284980:CDS
TTTCTACCACAGCATTATGC+AGG 0.521078 2_3:+24066360 None:intergenic
CAGAACTAATGCATGCAAGA+TGG 0.524297 2_3:-24067447 Msa0284980:CDS
GGCTCAATATCAACACTACC+CGG 0.525605 2_3:+24067241 None:intergenic
CTTGTGTCAATTGTAAAACT+CGG 0.527253 2_3:+24066304 None:intergenic
AAGTTGTTGATGTTGTTCCT+TGG 0.527869 2_3:+24068264 None:intergenic
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2_3:-24067108 Msa0284980:CDS
AATGGCCTATCTGGAGGAAG+TGG 0.535116 2_3:+24068170 None:intergenic
ATATGCAGAGCTGCATAAGA+TGG 0.545364 2_3:-24066123 Msa0284980:three_prime_UTR
AACTTCTCATGGTACAATGC+AGG 0.549392 2_3:-24067361 Msa0284980:CDS
AAACCAGATGTTGGTTACCC+TGG 0.553703 2_3:-24067193 Msa0284980:CDS
ATGGTTTGATCCTATGCAGT+GGG 0.554668 2_3:-24067164 Msa0284980:CDS
TATTAAACACAAATAACACT+TGG 0.557800 2_3:+24066143 None:intergenic
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2_3:-24067052 Msa0284980:CDS
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2_3:+24067154 None:intergenic
TTCCTCCAGATAGGCCATTG+TGG 0.574027 2_3:-24068166 Msa0284980:CDS
CAGATGTTGGTTACCCTGGA+GGG 0.578021 2_3:-24067189 Msa0284980:CDS
TATGGTTTGATCCTATGCAG+TGG 0.581606 2_3:-24067165 Msa0284980:CDS
GAGAAAATGTTGACATGACC+CGG 0.581640 2_3:+24066992 None:intergenic
ATGGGCCGATATCGTTAACC+CGG 0.593103 2_3:-24067260 Msa0284980:CDS
CCAAACCCAAAACCAGATGT+TGG 0.602151 2_3:-24067202 Msa0284980:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2_3:+24068395 None:intergenic
GGCTAAAGCCATTACTGCAG+TGG 0.605524 2_3:+24068425 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2_3:+24068398 None:intergenic
TTTCCTAATTACAAATTACA+GGG 0.608530 2_3:+24066235 None:intergenic
GGGTCAAAACCAAAATCACC+AGG 0.636273 2_3:+24067781 None:intergenic
GATCAAACCATAGCCCTCCA+GGG 0.655238 2_3:+24067176 None:intergenic
CCAGATGTTGGTTACCCTGG+AGG 0.656494 2_3:-24067190 Msa0284980:CDS
AACCACAATGGCCTATCTGG+AGG 0.659675 2_3:+24068164 None:intergenic
AAGACATACCTAATCCAAGA+GGG 0.664832 2_3:+24067761 None:intergenic
CAAAACCAAAATCACCAGGA+AGG 0.665067 2_3:+24067785 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2_3:+24068141 None:intergenic
GAACTACCAGGGAACCACAA+TGG 0.679112 2_3:+24068152 None:intergenic
TGGGCCGATATCGTTAACCC+GGG 0.686507 2_3:-24067259 Msa0284980:CDS
GCTCAATATCAACACTACCC+GGG 0.701726 2_3:+24067242 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2_3:+24068128 None:intergenic
TAAGACATACCTAATCCAAG+AGG 0.724614 2_3:+24067760 None:intergenic
AATGATCCTGCATAATGCTG+TGG 0.727298 2_3:-24066366 Msa0284980:three_prime_UTR
TGGTTTGATCCTATGCAGTG+GGG 0.749765 2_3:-24067163 Msa0284980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTCATTATATAATAG+AGG - chr2_3:24067861-24067880 Msa0284980:intron 10.0%
!! TTTAATTCATTATATAATAG+AGG - chr2_3:24067861-24067880 Msa0284980:intron 10.0%
!! AATAATAAGTTAAAAAGAGT+TGG + chr2_3:24066254-24066273 None:intergenic 15.0%
!!! ATTTTTGTTAGTTTTCTTAA+TGG - chr2_3:24066515-24066534 Msa0284980:intron 15.0%
!! CAAAATATAAAATGATGATA+AGG + chr2_3:24066792-24066811 None:intergenic 15.0%
!! AATAATAAGTTAAAAAGAGT+TGG + chr2_3:24066254-24066273 None:intergenic 15.0%
!!! ATTTTTGTTAGTTTTCTTAA+TGG - chr2_3:24066515-24066534 Msa0284980:intron 15.0%
!! CAAAATATAAAATGATGATA+AGG + chr2_3:24066792-24066811 None:intergenic 15.0%
!! ATCACTTTATCTGTTATATA+TGG + chr2_3:24066137-24066156 None:intergenic 20.0%
!!! AGTTTTCTTAATGGAAAATT+TGG - chr2_3:24066524-24066543 Msa0284980:intron 20.0%
!!! GTTTTTACTTTCGTTTTATT+TGG - chr2_3:24066588-24066607 Msa0284980:intron 20.0%
!!! GTAACATTTTGTTATTCTTA+TGG + chr2_3:24066886-24066905 None:intergenic 20.0%
!! TTATAGGTTAATTAGTTACT+TGG + chr2_3:24067099-24067118 None:intergenic 20.0%
!! TTTCCTAATTACAAATTACA+GGG + chr2_3:24068384-24068403 None:intergenic 20.0%
!! TATTAAACACAAATAACACT+TGG + chr2_3:24068476-24068495 None:intergenic 20.0%
!! ATCACTTTATCTGTTATATA+TGG + chr2_3:24066137-24066156 None:intergenic 20.0%
!!! AGTTTTCTTAATGGAAAATT+TGG - chr2_3:24066524-24066543 Msa0284980:intron 20.0%
!!! GTTTTTACTTTCGTTTTATT+TGG - chr2_3:24066588-24066607 Msa0284980:intron 20.0%
!!! GTAACATTTTGTTATTCTTA+TGG + chr2_3:24066886-24066905 None:intergenic 20.0%
!! TTATAGGTTAATTAGTTACT+TGG + chr2_3:24067099-24067118 None:intergenic 20.0%
!! TTTCCTAATTACAAATTACA+GGG + chr2_3:24068384-24068403 None:intergenic 20.0%
!! TATTAAACACAAATAACACT+TGG + chr2_3:24068476-24068495 None:intergenic 20.0%
! TATCTGTTATATATGGATGA+TGG + chr2_3:24066130-24066149 None:intergenic 25.0%
! ACAATTAGAAATGCAAAGAA+AGG - chr2_3:24066404-24066423 Msa0284980:exon 25.0%
! GATATTTACTCTTTAGCATT+TGG + chr2_3:24066663-24066682 None:intergenic 25.0%
! AGTAAAAACAACATCATAGT+GGG + chr2_3:24066699-24066718 None:intergenic 25.0%
! AAGTAAAAACAACATCATAG+TGG + chr2_3:24066700-24066719 None:intergenic 25.0%
! ATAAAATGATGATAAGGCTT+TGG + chr2_3:24066786-24066805 None:intergenic 25.0%
! ACCTATAAATTAATCCTTTC+AGG - chr2_3:24067111-24067130 Msa0284980:CDS 25.0%
! CCTATAAATTAATCCTTTCA+GGG - chr2_3:24067112-24067131 Msa0284980:CDS 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG + chr2_3:24067225-24067244 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG - chr2_3:24067222-24067241 Msa0284980:CDS 25.0%
!! TAGTCCTATTGATAATTTGA+TGG - chr2_3:24067587-24067606 Msa0284980:intron 25.0%
! AAAATTCATGTAGCTTCTAT+TGG + chr2_3:24067995-24068014 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG - chr2_3:24068003-24068022 Msa0284980:intron 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG - chr2_3:24068009-24068028 Msa0284980:intron 25.0%
!! TTTCCCTGTAATTTGTAATT+AGG - chr2_3:24068378-24068397 Msa0284980:intron 25.0%
! CTTTCCTAATTACAAATTAC+AGG + chr2_3:24068385-24068404 None:intergenic 25.0%
! CTTCTTGTATTATATGAAAC+TGG - chr2_3:24068412-24068431 Msa0284980:CDS 25.0%
! TATCTGTTATATATGGATGA+TGG + chr2_3:24066130-24066149 None:intergenic 25.0%
! ACAATTAGAAATGCAAAGAA+AGG - chr2_3:24066404-24066423 Msa0284980:exon 25.0%
! GATATTTACTCTTTAGCATT+TGG + chr2_3:24066663-24066682 None:intergenic 25.0%
! AGTAAAAACAACATCATAGT+GGG + chr2_3:24066699-24066718 None:intergenic 25.0%
! AAGTAAAAACAACATCATAG+TGG + chr2_3:24066700-24066719 None:intergenic 25.0%
! ATAAAATGATGATAAGGCTT+TGG + chr2_3:24066786-24066805 None:intergenic 25.0%
! ACCTATAAATTAATCCTTTC+AGG - chr2_3:24067111-24067130 Msa0284980:CDS 25.0%
! CCTATAAATTAATCCTTTCA+GGG - chr2_3:24067112-24067131 Msa0284980:CDS 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG + chr2_3:24067225-24067244 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG - chr2_3:24067222-24067241 Msa0284980:CDS 25.0%
!! TAGTCCTATTGATAATTTGA+TGG - chr2_3:24067587-24067606 Msa0284980:intron 25.0%
! AAAATTCATGTAGCTTCTAT+TGG + chr2_3:24067995-24068014 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG - chr2_3:24068003-24068022 Msa0284980:intron 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG - chr2_3:24068009-24068028 Msa0284980:intron 25.0%
!! TTTCCCTGTAATTTGTAATT+AGG - chr2_3:24068378-24068397 Msa0284980:intron 25.0%
! CTTTCCTAATTACAAATTAC+AGG + chr2_3:24068385-24068404 None:intergenic 25.0%
! CTTCTTGTATTATATGAAAC+TGG - chr2_3:24068412-24068431 Msa0284980:CDS 25.0%
!! AAAACTTGATAATGAAGTGG+AGG + chr2_3:24066221-24066240 None:intergenic 30.0%
!! TGGAAAACTTGATAATGAAG+TGG + chr2_3:24066224-24066243 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG - chr2_3:24066227-24066246 Msa0284980:three_prime_UTR 30.0%
ATGCAGAGAAATATGTCAAA+AGG - chr2_3:24066322-24066341 Msa0284980:three_prime_UTR 30.0%
TAGGTTAATTAGTTACTTGG+TGG + chr2_3:24067096-24067115 None:intergenic 30.0%
CCCTGAAAGGATTAATTTAT+AGG + chr2_3:24067115-24067134 None:intergenic 30.0%
GTTATGTCAAAAACTTCTCA+TGG - chr2_3:24067244-24067263 Msa0284980:CDS 30.0%
!! GAACAATGAAAAGTGTTGTT+GGG + chr2_3:24067302-24067321 None:intergenic 30.0%
!! TGAACAATGAAAAGTGTTGT+TGG + chr2_3:24067303-24067322 None:intergenic 30.0%
!! ATTGTTCAACTAGCCTTAAT+GGG - chr2_3:24067315-24067334 Msa0284980:CDS 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG - chr2_3:24067561-24067580 Msa0284980:intron 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG - chr2_3:24067562-24067581 Msa0284980:intron 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG - chr2_3:24067563-24067582 Msa0284980:intron 30.0%
TGAGCCATCAAATTATCAAT+AGG + chr2_3:24067594-24067613 None:intergenic 30.0%
TTCTACCATGTTTCATTTGT+AGG - chr2_3:24067671-24067690 Msa0284980:intron 30.0%
AGAAACCTACAAATGAAACA+TGG + chr2_3:24067679-24067698 None:intergenic 30.0%
TATATCGTGTATTTACCACA+TGG + chr2_3:24067781-24067800 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG - chr2_3:24068008-24068027 Msa0284980:intron 30.0%
ACAAATCAATGTTTCGATCT+CGG - chr2_3:24068127-24068146 Msa0284980:intron 30.0%
CTTGTGTCAATTGTAAAACT+CGG + chr2_3:24068315-24068334 None:intergenic 30.0%
!! TATATGGATGATGGATAAGT+TGG + chr2_3:24066121-24066140 None:intergenic 30.0%
!! AAAACTTGATAATGAAGTGG+AGG + chr2_3:24066221-24066240 None:intergenic 30.0%
!! TGGAAAACTTGATAATGAAG+TGG + chr2_3:24066224-24066243 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG - chr2_3:24066227-24066246 Msa0284980:three_prime_UTR 30.0%
ATGCAGAGAAATATGTCAAA+AGG - chr2_3:24066322-24066341 Msa0284980:three_prime_UTR 30.0%
TAGGTTAATTAGTTACTTGG+TGG + chr2_3:24067096-24067115 None:intergenic 30.0%
CCCTGAAAGGATTAATTTAT+AGG + chr2_3:24067115-24067134 None:intergenic 30.0%
GTTATGTCAAAAACTTCTCA+TGG - chr2_3:24067244-24067263 Msa0284980:CDS 30.0%
!! GAACAATGAAAAGTGTTGTT+GGG + chr2_3:24067302-24067321 None:intergenic 30.0%
!! TGAACAATGAAAAGTGTTGT+TGG + chr2_3:24067303-24067322 None:intergenic 30.0%
!! ATTGTTCAACTAGCCTTAAT+GGG - chr2_3:24067315-24067334 Msa0284980:CDS 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG - chr2_3:24067561-24067580 Msa0284980:intron 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG - chr2_3:24067562-24067581 Msa0284980:intron 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG - chr2_3:24067563-24067582 Msa0284980:intron 30.0%
TGAGCCATCAAATTATCAAT+AGG + chr2_3:24067594-24067613 None:intergenic 30.0%
TTCTACCATGTTTCATTTGT+AGG - chr2_3:24067671-24067690 Msa0284980:intron 30.0%
AGAAACCTACAAATGAAACA+TGG + chr2_3:24067679-24067698 None:intergenic 30.0%
TATATCGTGTATTTACCACA+TGG + chr2_3:24067781-24067800 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG - chr2_3:24068008-24068027 Msa0284980:intron 30.0%
ACAAATCAATGTTTCGATCT+CGG - chr2_3:24068127-24068146 Msa0284980:intron 30.0%
CTTGTGTCAATTGTAAAACT+CGG + chr2_3:24068315-24068334 None:intergenic 30.0%
! TGATAATGAAGTGGAGGAAA+TGG + chr2_3:24066215-24066234 None:intergenic 35.0%
TAAAAAGAGTTGGACCTGTT+TGG + chr2_3:24066244-24066263 None:intergenic 35.0%
! TGTCAAAAGGTTTTACACCA+AGG - chr2_3:24066335-24066354 Msa0284980:three_prime_UTR 35.0%
AAGTTGTTGATGTTGTTCCT+TGG + chr2_3:24066355-24066374 None:intergenic 35.0%
GAACAACATCAACAACTTCA+TGG - chr2_3:24066357-24066376 Msa0284980:three_prime_UTR 35.0%
! ACTCTTTAGCATTTGGTTCA+GGG + chr2_3:24066656-24066675 None:intergenic 35.0%
! TACTCTTTAGCATTTGGTTC+AGG + chr2_3:24066657-24066676 None:intergenic 35.0%
AAGACATACCTAATCCAAGA+GGG + chr2_3:24066858-24066877 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG + chr2_3:24066859-24066878 None:intergenic 35.0%
ACGTCTTCAATATGAAGTGT+CGG + chr2_3:24066936-24066955 None:intergenic 35.0%
AGAACTAATGCATGCAAGAT+GGG - chr2_3:24067170-24067189 Msa0284980:CDS 35.0%
!! CATTGTTCAACTAGCCTTAA+TGG - chr2_3:24067314-24067333 Msa0284980:CDS 35.0%
! TTTGGCCTATTTGGTAACTT+GGG + chr2_3:24067399-24067418 None:intergenic 35.0%
TTAGTCCTCAAAACCATTAC+AGG + chr2_3:24067495-24067514 None:intergenic 35.0%
!!! TGTAATGGTTTTGAGGACTA+AGG - chr2_3:24067494-24067513 Msa0284980:intron 35.0%
AGGACTAAGGAGATTAAGAA+TGG - chr2_3:24067507-24067526 Msa0284980:intron 35.0%
GGACTAAGGAGATTAAGAAT+GGG - chr2_3:24067508-24067527 Msa0284980:intron 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG - chr2_3:24067535-24067554 Msa0284980:intron 35.0%
TTTCAAGCTGTTTATGTTGG+GGG - chr2_3:24067564-24067583 Msa0284980:intron 35.0%
CATCATTGAATGCATGTGTA+AGG + chr2_3:24067839-24067858 None:intergenic 35.0%
!! TCATGCCTTAATGTTTTGAG+CGG - chr2_3:24067903-24067922 Msa0284980:intron 35.0%
! GCTTCTATTGGAAATGGATT+AGG + chr2_3:24067983-24068002 None:intergenic 35.0%
CATGTAGCTTCTATTGGAAA+TGG + chr2_3:24067989-24068008 None:intergenic 35.0%
! TGATAATGAAGTGGAGGAAA+TGG + chr2_3:24066215-24066234 None:intergenic 35.0%
TAAAAAGAGTTGGACCTGTT+TGG + chr2_3:24066244-24066263 None:intergenic 35.0%
! TGTCAAAAGGTTTTACACCA+AGG - chr2_3:24066335-24066354 Msa0284980:three_prime_UTR 35.0%
AAGTTGTTGATGTTGTTCCT+TGG + chr2_3:24066355-24066374 None:intergenic 35.0%
GAACAACATCAACAACTTCA+TGG - chr2_3:24066357-24066376 Msa0284980:three_prime_UTR 35.0%
! ACTCTTTAGCATTTGGTTCA+GGG + chr2_3:24066656-24066675 None:intergenic 35.0%
! TACTCTTTAGCATTTGGTTC+AGG + chr2_3:24066657-24066676 None:intergenic 35.0%
AAGACATACCTAATCCAAGA+GGG + chr2_3:24066858-24066877 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG + chr2_3:24066859-24066878 None:intergenic 35.0%
ACGTCTTCAATATGAAGTGT+CGG + chr2_3:24066936-24066955 None:intergenic 35.0%
AGAACTAATGCATGCAAGAT+GGG - chr2_3:24067170-24067189 Msa0284980:CDS 35.0%
!! CATTGTTCAACTAGCCTTAA+TGG - chr2_3:24067314-24067333 Msa0284980:CDS 35.0%
! TTTGGCCTATTTGGTAACTT+GGG + chr2_3:24067399-24067418 None:intergenic 35.0%
TTAGTCCTCAAAACCATTAC+AGG + chr2_3:24067495-24067514 None:intergenic 35.0%
!!! TGTAATGGTTTTGAGGACTA+AGG - chr2_3:24067494-24067513 Msa0284980:intron 35.0%
AGGACTAAGGAGATTAAGAA+TGG - chr2_3:24067507-24067526 Msa0284980:intron 35.0%
GGACTAAGGAGATTAAGAAT+GGG - chr2_3:24067508-24067527 Msa0284980:intron 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG - chr2_3:24067535-24067554 Msa0284980:intron 35.0%
TTTCAAGCTGTTTATGTTGG+GGG - chr2_3:24067564-24067583 Msa0284980:intron 35.0%
CATCATTGAATGCATGTGTA+AGG + chr2_3:24067839-24067858 None:intergenic 35.0%
!! TCATGCCTTAATGTTTTGAG+CGG - chr2_3:24067903-24067922 Msa0284980:intron 35.0%
! GCTTCTATTGGAAATGGATT+AGG + chr2_3:24067983-24068002 None:intergenic 35.0%
CATGTAGCTTCTATTGGAAA+TGG + chr2_3:24067989-24068008 None:intergenic 35.0%
GCTGAATTTCTTACTTGGAG+TGG + chr2_3:24066172-24066191 None:intergenic 40.0%
CAGTGGCTGAATTTCTTACT+TGG + chr2_3:24066177-24066196 None:intergenic 40.0%
AAATTCAGCCACTGCAGTAA+TGG - chr2_3:24066183-24066202 Msa0284980:three_prime_UTR 40.0%
CAAAACCAAAATCACCAGGA+AGG + chr2_3:24066834-24066853 None:intergenic 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG - chr2_3:24066841-24066860 Msa0284980:intron 40.0%
TGTTACGATGTACGATGTGT+TGG - chr2_3:24066900-24066919 Msa0284980:intron 40.0%
! CGTCTTCAATATGAAGTGTC+GGG + chr2_3:24066935-24066954 None:intergenic 40.0%
CTTCATATTGAAGACGTGTC+CGG - chr2_3:24066939-24066958 Msa0284980:intron 40.0%
GATATGTATCAGACAGACAC+CGG + chr2_3:24066961-24066980 None:intergenic 40.0%
TATTACCAGTGACTACGTGT+CGG - chr2_3:24067040-24067059 Msa0284980:CDS 40.0%
! TGGTGGTGAATCAATATGCA+CGG + chr2_3:24067079-24067098 None:intergenic 40.0%
CAGATCCAGAGTTGCTAAAA+TGG - chr2_3:24067136-24067155 Msa0284980:CDS 40.0%
!! GCTAACCATTTTAGCAACTC+TGG + chr2_3:24067144-24067163 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG - chr2_3:24067169-24067188 Msa0284980:CDS 40.0%
AACTTCTCATGGTACAATGC+AGG - chr2_3:24067255-24067274 Msa0284980:CDS 40.0%
!! TTCAACTAGCCTTAATGGGT+TGG - chr2_3:24067319-24067338 Msa0284980:CDS 40.0%
!! TCAACTAGCCTTAATGGGTT+GGG - chr2_3:24067320-24067339 Msa0284980:CDS 40.0%
TTGAGCCCAAGTTACCAAAT+AGG - chr2_3:24067391-24067410 Msa0284980:CDS 40.0%
! GTTTGGCCTATTTGGTAACT+TGG + chr2_3:24067400-24067419 None:intergenic 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG + chr2_3:24067422-24067441 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG - chr2_3:24067451-24067470 Msa0284980:CDS 40.0%
ATGGTTTGATCCTATGCAGT+GGG - chr2_3:24067452-24067471 Msa0284980:CDS 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG - chr2_3:24067534-24067553 Msa0284980:intron 40.0%
GAGAAAATGTTGACATGACC+CGG + chr2_3:24067627-24067646 None:intergenic 40.0%
! GGGTCATGTCAACATTTTCT+CGG - chr2_3:24067626-24067645 Msa0284980:intron 40.0%
TCTCTCCGCTCAAAACATTA+AGG + chr2_3:24067911-24067930 None:intergenic 40.0%
AAACTATATGCGCACCAACT+AGG - chr2_3:24068084-24068103 Msa0284980:intron 40.0%
!! ACATTGATTTGTCGCGTTGT+GGG + chr2_3:24068119-24068138 None:intergenic 40.0%
!! AACATTGATTTGTCGCGTTG+TGG + chr2_3:24068120-24068139 None:intergenic 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG - chr2_3:24068184-24068203 Msa0284980:CDS 40.0%
AATGATCCTGCATAATGCTG+TGG - chr2_3:24068250-24068269 Msa0284980:CDS 40.0%
TTTCTACCACAGCATTATGC+AGG + chr2_3:24068259-24068278 None:intergenic 40.0%
ATATGCAGAGCTGCATAAGA+TGG - chr2_3:24068493-24068512 Msa0284980:five_prime_UTR 40.0%
GCTGAATTTCTTACTTGGAG+TGG + chr2_3:24066172-24066191 None:intergenic 40.0%
CAGTGGCTGAATTTCTTACT+TGG + chr2_3:24066177-24066196 None:intergenic 40.0%
AAATTCAGCCACTGCAGTAA+TGG - chr2_3:24066183-24066202 Msa0284980:three_prime_UTR 40.0%
CAAAACCAAAATCACCAGGA+AGG + chr2_3:24066834-24066853 None:intergenic 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG - chr2_3:24066841-24066860 Msa0284980:intron 40.0%
TGTTACGATGTACGATGTGT+TGG - chr2_3:24066900-24066919 Msa0284980:intron 40.0%
! CGTCTTCAATATGAAGTGTC+GGG + chr2_3:24066935-24066954 None:intergenic 40.0%
CTTCATATTGAAGACGTGTC+CGG - chr2_3:24066939-24066958 Msa0284980:intron 40.0%
GATATGTATCAGACAGACAC+CGG + chr2_3:24066961-24066980 None:intergenic 40.0%
TATTACCAGTGACTACGTGT+CGG - chr2_3:24067040-24067059 Msa0284980:CDS 40.0%
! TGGTGGTGAATCAATATGCA+CGG + chr2_3:24067079-24067098 None:intergenic 40.0%
CAGATCCAGAGTTGCTAAAA+TGG - chr2_3:24067136-24067155 Msa0284980:CDS 40.0%
!! GCTAACCATTTTAGCAACTC+TGG + chr2_3:24067144-24067163 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG - chr2_3:24067169-24067188 Msa0284980:CDS 40.0%
AACTTCTCATGGTACAATGC+AGG - chr2_3:24067255-24067274 Msa0284980:CDS 40.0%
!! TTCAACTAGCCTTAATGGGT+TGG - chr2_3:24067319-24067338 Msa0284980:CDS 40.0%
!! TCAACTAGCCTTAATGGGTT+GGG - chr2_3:24067320-24067339 Msa0284980:CDS 40.0%
TTGAGCCCAAGTTACCAAAT+AGG - chr2_3:24067391-24067410 Msa0284980:CDS 40.0%
! GTTTGGCCTATTTGGTAACT+TGG + chr2_3:24067400-24067419 None:intergenic 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG + chr2_3:24067422-24067441 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG - chr2_3:24067451-24067470 Msa0284980:CDS 40.0%
ATGGTTTGATCCTATGCAGT+GGG - chr2_3:24067452-24067471 Msa0284980:CDS 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG - chr2_3:24067534-24067553 Msa0284980:intron 40.0%
GAGAAAATGTTGACATGACC+CGG + chr2_3:24067627-24067646 None:intergenic 40.0%
! GGGTCATGTCAACATTTTCT+CGG - chr2_3:24067626-24067645 Msa0284980:intron 40.0%
TCTCTCCGCTCAAAACATTA+AGG + chr2_3:24067911-24067930 None:intergenic 40.0%
AAACTATATGCGCACCAACT+AGG - chr2_3:24068084-24068103 Msa0284980:intron 40.0%
!! ACATTGATTTGTCGCGTTGT+GGG + chr2_3:24068119-24068138 None:intergenic 40.0%
!! AACATTGATTTGTCGCGTTG+TGG + chr2_3:24068120-24068139 None:intergenic 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG - chr2_3:24068184-24068203 Msa0284980:CDS 40.0%
AATGATCCTGCATAATGCTG+TGG - chr2_3:24068250-24068269 Msa0284980:CDS 40.0%
TTTCTACCACAGCATTATGC+AGG + chr2_3:24068259-24068278 None:intergenic 40.0%
ATATGCAGAGCTGCATAAGA+TGG - chr2_3:24068493-24068512 Msa0284980:five_prime_UTR 40.0%
ATTCAGGAGGTGAACTACCA+GGG + chr2_3:24066478-24066497 None:intergenic 45.0%
!! TGATTTCTAGTCAGTGCGTG+CGG + chr2_3:24066631-24066650 None:intergenic 45.0%
! CATCATAGTGGGACACAAGT+TGG + chr2_3:24066688-24066707 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG + chr2_3:24066838-24066857 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG - chr2_3:24066847-24066866 Msa0284980:intron 45.0%
CATGCAAGATGGGCAATGTT+AGG - chr2_3:24067180-24067199 Msa0284980:CDS 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG - chr2_3:24067189-24067208 Msa0284980:CDS 45.0%
ACCTTCAACCCAACCCATTA+AGG + chr2_3:24067331-24067350 None:intergenic 45.0%
!! TTGGGTTGAAGGTCGAAGAT+GGG - chr2_3:24067338-24067357 Msa0284980:CDS 45.0%
ACTACCCGGGTTAACGATAT+CGG + chr2_3:24067364-24067383 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG + chr2_3:24067377-24067396 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG + chr2_3:24067378-24067397 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG + chr2_3:24067408-24067427 None:intergenic 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG + chr2_3:24067417-24067436 None:intergenic 45.0%
CCAAACCCAAAACCAGATGT+TGG - chr2_3:24067414-24067433 Msa0284980:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG + chr2_3:24067423-24067442 None:intergenic 45.0%
! AAACCAGATGTTGGTTACCC+TGG - chr2_3:24067423-24067442 Msa0284980:CDS 45.0%
TGGTTTGATCCTATGCAGTG+GGG - chr2_3:24067453-24067472 Msa0284980:CDS 45.0%
CTCAAAACCATTACAGGCTC+AGG + chr2_3:24067489-24067508 None:intergenic 45.0%
!! CTGAGCCTGTAATGGTTTTG+AGG - chr2_3:24067487-24067506 Msa0284980:intron 45.0%
!! CGATTAGTTTCACGACCATG+TGG - chr2_3:24067763-24067782 Msa0284980:intron 45.0%
AGGCATGACACATGAGTACA+TGG + chr2_3:24067891-24067910 None:intergenic 45.0%
TTGTGCAGGCTTTCACTTCA+GGG - chr2_3:24068198-24068217 Msa0284980:CDS 45.0%
TTCACTTCAGGGTAGTGCTA+TGG - chr2_3:24068209-24068228 Msa0284980:CDS 45.0%
TTCAGGGTAGTGCTATGGTT+TGG - chr2_3:24068214-24068233 Msa0284980:CDS 45.0%
ATTCAGGAGGTGAACTACCA+GGG + chr2_3:24066478-24066497 None:intergenic 45.0%
!! TGATTTCTAGTCAGTGCGTG+CGG + chr2_3:24066631-24066650 None:intergenic 45.0%
! CATCATAGTGGGACACAAGT+TGG + chr2_3:24066688-24066707 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG + chr2_3:24066838-24066857 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG - chr2_3:24066847-24066866 Msa0284980:intron 45.0%
CATGCAAGATGGGCAATGTT+AGG - chr2_3:24067180-24067199 Msa0284980:CDS 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG - chr2_3:24067189-24067208 Msa0284980:CDS 45.0%
ACCTTCAACCCAACCCATTA+AGG + chr2_3:24067331-24067350 None:intergenic 45.0%
!! TTGGGTTGAAGGTCGAAGAT+GGG - chr2_3:24067338-24067357 Msa0284980:CDS 45.0%
ACTACCCGGGTTAACGATAT+CGG + chr2_3:24067364-24067383 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG + chr2_3:24067377-24067396 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG + chr2_3:24067378-24067397 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG + chr2_3:24067408-24067427 None:intergenic 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG + chr2_3:24067417-24067436 None:intergenic 45.0%
CCAAACCCAAAACCAGATGT+TGG - chr2_3:24067414-24067433 Msa0284980:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG + chr2_3:24067423-24067442 None:intergenic 45.0%
! AAACCAGATGTTGGTTACCC+TGG - chr2_3:24067423-24067442 Msa0284980:CDS 45.0%
TGGTTTGATCCTATGCAGTG+GGG - chr2_3:24067453-24067472 Msa0284980:CDS 45.0%
CTCAAAACCATTACAGGCTC+AGG + chr2_3:24067489-24067508 None:intergenic 45.0%
!! CTGAGCCTGTAATGGTTTTG+AGG - chr2_3:24067487-24067506 Msa0284980:intron 45.0%
!! CGATTAGTTTCACGACCATG+TGG - chr2_3:24067763-24067782 Msa0284980:intron 45.0%
AGGCATGACACATGAGTACA+TGG + chr2_3:24067891-24067910 None:intergenic 45.0%
TTGTGCAGGCTTTCACTTCA+GGG - chr2_3:24068198-24068217 Msa0284980:CDS 45.0%
TTCACTTCAGGGTAGTGCTA+TGG - chr2_3:24068209-24068228 Msa0284980:CDS 45.0%
TTCAGGGTAGTGCTATGGTT+TGG - chr2_3:24068214-24068233 Msa0284980:CDS 45.0%
!!! TTCTAAAATATAAAATAAAA+TGG + chr2_3:24066751-24066770 None:intergenic 5.0%
!!! TTCTAAAATATAAAATAAAA+TGG + chr2_3:24066751-24066770 None:intergenic 5.0%
GGCTAAAGCCATTACTGCAG+TGG + chr2_3:24066194-24066213 None:intergenic 50.0%
GTGAACCACTTCCTCCAGAT+AGG - chr2_3:24066441-24066460 Msa0284980:intron 50.0%
AATGGCCTATCTGGAGGAAG+TGG + chr2_3:24066449-24066468 None:intergenic 50.0%
TTCCTCCAGATAGGCCATTG+TGG - chr2_3:24066450-24066469 Msa0284980:intron 50.0%
AACCACAATGGCCTATCTGG+AGG + chr2_3:24066455-24066474 None:intergenic 50.0%
GAACTACCAGGGAACCACAA+TGG + chr2_3:24066467-24066486 None:intergenic 50.0%
CATTCAGGAGGTGAACTACC+AGG + chr2_3:24066479-24066498 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG - chr2_3:24066477-24066496 Msa0284980:intron 50.0%
TCACCTCCTGAATGGCTTGA+TGG - chr2_3:24066485-24066504 Msa0284980:intron 50.0%
TACCTGCCATCAAGCCATTC+AGG + chr2_3:24066494-24066513 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+GGG + chr2_3:24066823-24066842 None:intergenic 50.0%
ATCACCAGGAAGGCTGCAAT+TGG + chr2_3:24066824-24066843 None:intergenic 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG - chr2_3:24066826-24066845 Msa0284980:intron 50.0%
TGATACCGACACGTAGTCAC+TGG + chr2_3:24067048-24067067 None:intergenic 50.0%
! GTGACTACGTGTCGGTATCA+CGG - chr2_3:24067048-24067067 Msa0284980:CDS 50.0%
ACTCTGGATCTGACCCTGAA+AGG + chr2_3:24067128-24067147 None:intergenic 50.0%
!! GCCTTAATGGGTTGGGTTGA+AGG - chr2_3:24067327-24067346 Msa0284980:CDS 50.0%
!! GTTGGGTTGAAGGTCGAAGA+TGG - chr2_3:24067337-24067356 Msa0284980:CDS 50.0%
ATGGGCCGATATCGTTAACC+CGG - chr2_3:24067356-24067375 Msa0284980:CDS 50.0%
! CAGATGTTGGTTACCCTGGA+GGG - chr2_3:24067427-24067446 Msa0284980:CDS 50.0%
GATCAAACCATAGCCCTCCA+GGG + chr2_3:24067443-24067462 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTAA+TGG - chr2_3:24067479-24067498 Msa0284980:CDS 50.0%
GATGGCTCATCTTGCTGATC+CGG - chr2_3:24067605-24067624 Msa0284980:intron 50.0%
ATGGCTCATCTTGCTGATCC+GGG - chr2_3:24067606-24067625 Msa0284980:intron 50.0%
ATGTTTCGATCTCGGCTGAG+AGG - chr2_3:24068135-24068154 Msa0284980:CDS 50.0%
CTTGTGCAGGCTTTCACTTC+AGG - chr2_3:24068197-24068216 Msa0284980:CDS 50.0%
GGCTAAAGCCATTACTGCAG+TGG + chr2_3:24066194-24066213 None:intergenic 50.0%
GTGAACCACTTCCTCCAGAT+AGG - chr2_3:24066441-24066460 Msa0284980:intron 50.0%
AATGGCCTATCTGGAGGAAG+TGG + chr2_3:24066449-24066468 None:intergenic 50.0%
TTCCTCCAGATAGGCCATTG+TGG - chr2_3:24066450-24066469 Msa0284980:intron 50.0%
AACCACAATGGCCTATCTGG+AGG + chr2_3:24066455-24066474 None:intergenic 50.0%
GAACTACCAGGGAACCACAA+TGG + chr2_3:24066467-24066486 None:intergenic 50.0%
CATTCAGGAGGTGAACTACC+AGG + chr2_3:24066479-24066498 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG - chr2_3:24066477-24066496 Msa0284980:intron 50.0%
TCACCTCCTGAATGGCTTGA+TGG - chr2_3:24066485-24066504 Msa0284980:intron 50.0%
TACCTGCCATCAAGCCATTC+AGG + chr2_3:24066494-24066513 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+GGG + chr2_3:24066823-24066842 None:intergenic 50.0%
ATCACCAGGAAGGCTGCAAT+TGG + chr2_3:24066824-24066843 None:intergenic 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG - chr2_3:24066826-24066845 Msa0284980:intron 50.0%
TGATACCGACACGTAGTCAC+TGG + chr2_3:24067048-24067067 None:intergenic 50.0%
! GTGACTACGTGTCGGTATCA+CGG - chr2_3:24067048-24067067 Msa0284980:CDS 50.0%
ACTCTGGATCTGACCCTGAA+AGG + chr2_3:24067128-24067147 None:intergenic 50.0%
!! GCCTTAATGGGTTGGGTTGA+AGG - chr2_3:24067327-24067346 Msa0284980:CDS 50.0%
!! GTTGGGTTGAAGGTCGAAGA+TGG - chr2_3:24067337-24067356 Msa0284980:CDS 50.0%
ATGGGCCGATATCGTTAACC+CGG - chr2_3:24067356-24067375 Msa0284980:CDS 50.0%
! CAGATGTTGGTTACCCTGGA+GGG - chr2_3:24067427-24067446 Msa0284980:CDS 50.0%
GATCAAACCATAGCCCTCCA+GGG + chr2_3:24067443-24067462 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTAA+TGG - chr2_3:24067479-24067498 Msa0284980:CDS 50.0%
GATGGCTCATCTTGCTGATC+CGG - chr2_3:24067605-24067624 Msa0284980:intron 50.0%
ATGGCTCATCTTGCTGATCC+GGG - chr2_3:24067606-24067625 Msa0284980:intron 50.0%
ATGTTTCGATCTCGGCTGAG+AGG - chr2_3:24068135-24068154 Msa0284980:CDS 50.0%
CTTGTGCAGGCTTTCACTTC+AGG - chr2_3:24068197-24068216 Msa0284980:CDS 50.0%
GGGAACCACAATGGCCTATC+TGG + chr2_3:24066458-24066477 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG - chr2_3:24066458-24066477 Msa0284980:intron 55.0%
CTGCCATCAAGCCATTCAGG+AGG + chr2_3:24066491-24066510 None:intergenic 55.0%
! CTCCTGAATGGCTTGATGGC+AGG - chr2_3:24066489-24066508 Msa0284980:intron 55.0%
! GTGCGTGCGGAGGATACTTT+TGG + chr2_3:24066618-24066637 None:intergenic 55.0%
! TTTCTAGTCAGTGCGTGCGG+AGG + chr2_3:24066628-24066647 None:intergenic 55.0%
CTTCCCAATTGCAGCCTTCC+TGG - chr2_3:24066817-24066836 Msa0284980:intron 55.0%
TGGGCCGATATCGTTAACCC+GGG - chr2_3:24067357-24067376 Msa0284980:CDS 55.0%
CCTCCAGGGTAACCAACATC+TGG + chr2_3:24067429-24067448 None:intergenic 55.0%
! CCAGATGTTGGTTACCCTGG+AGG - chr2_3:24067426-24067445 Msa0284980:CDS 55.0%
TTGGTTACCCTGGAGGGCTA+TGG - chr2_3:24067433-24067452 Msa0284980:CDS 55.0%
GGATCAAACCATAGCCCTCC+AGG + chr2_3:24067444-24067463 None:intergenic 55.0%
GATCCTATGCAGTGGGGAAG+AGG - chr2_3:24067459-24067478 Msa0284980:CDS 55.0%
GAACCTCTTCCCCACTGCAT+AGG + chr2_3:24067465-24067484 None:intergenic 55.0%
GTGGGAGACTAGGTCCTAGT+TGG + chr2_3:24068101-24068120 None:intergenic 55.0%
TTGTCGCGTTGTGGGAGACT+AGG + chr2_3:24068111-24068130 None:intergenic 55.0%
GGGAACCACAATGGCCTATC+TGG + chr2_3:24066458-24066477 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG - chr2_3:24066458-24066477 Msa0284980:intron 55.0%
CTGCCATCAAGCCATTCAGG+AGG + chr2_3:24066491-24066510 None:intergenic 55.0%
! CTCCTGAATGGCTTGATGGC+AGG - chr2_3:24066489-24066508 Msa0284980:intron 55.0%
! GTGCGTGCGGAGGATACTTT+TGG + chr2_3:24066618-24066637 None:intergenic 55.0%
! TTTCTAGTCAGTGCGTGCGG+AGG + chr2_3:24066628-24066647 None:intergenic 55.0%
CTTCCCAATTGCAGCCTTCC+TGG - chr2_3:24066817-24066836 Msa0284980:intron 55.0%
TGGGCCGATATCGTTAACCC+GGG - chr2_3:24067357-24067376 Msa0284980:CDS 55.0%
CCTCCAGGGTAACCAACATC+TGG + chr2_3:24067429-24067448 None:intergenic 55.0%
! CCAGATGTTGGTTACCCTGG+AGG - chr2_3:24067426-24067445 Msa0284980:CDS 55.0%
TTGGTTACCCTGGAGGGCTA+TGG - chr2_3:24067433-24067452 Msa0284980:CDS 55.0%
GGATCAAACCATAGCCCTCC+AGG + chr2_3:24067444-24067463 None:intergenic 55.0%
GATCCTATGCAGTGGGGAAG+AGG - chr2_3:24067459-24067478 Msa0284980:CDS 55.0%
GAACCTCTTCCCCACTGCAT+AGG + chr2_3:24067465-24067484 None:intergenic 55.0%
GTGGGAGACTAGGTCCTAGT+TGG + chr2_3:24068101-24068120 None:intergenic 55.0%
TTGTCGCGTTGTGGGAGACT+AGG + chr2_3:24068111-24068130 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 24066119 24068519 24066119 ID=Msa0284980;Name=Msa0284980
chr2_3 mRNA 24066119 24068519 24066119 ID=Msa0284980-mRNA-1;Parent=Msa0284980;Name=Msa0284980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83|1|1|1|1|0.8|5|296|266
chr2_3 exon 24066119 24066432 24066119 ID=Msa0284980-mRNA-1:exon:9127;Parent=Msa0284980-mRNA-1
chr2_3 exon 24066991 24067505 24066991 ID=Msa0284980-mRNA-1:exon:9126;Parent=Msa0284980-mRNA-1
chr2_3 exon 24067770 24067807 24067770 ID=Msa0284980-mRNA-1:exon:9125;Parent=Msa0284980-mRNA-1
chr2_3 exon 24068128 24068310 24068128 ID=Msa0284980-mRNA-1:exon:9124;Parent=Msa0284980-mRNA-1
chr2_3 exon 24068390 24068519 24068390 ID=Msa0284980-mRNA-1:exon:9123;Parent=Msa0284980-mRNA-1
chr2_3 five_prime_UTR 24068437 24068519 24068437 ID=Msa0284980-mRNA-1:five_prime_utr;Parent=Msa0284980-mRNA-1
chr2_3 CDS 24068390 24068436 24068390 ID=Msa0284980-mRNA-1:cds;Parent=Msa0284980-mRNA-1
chr2_3 CDS 24068128 24068310 24068128 ID=Msa0284980-mRNA-1:cds;Parent=Msa0284980-mRNA-1
chr2_3 CDS 24067770 24067807 24067770 ID=Msa0284980-mRNA-1:cds;Parent=Msa0284980-mRNA-1
chr2_3 CDS 24066991 24067505 24066991 ID=Msa0284980-mRNA-1:cds;Parent=Msa0284980-mRNA-1
chr2_3 CDS 24066415 24066432 24066415 ID=Msa0284980-mRNA-1:cds;Parent=Msa0284980-mRNA-1
chr2_3 three_prime_UTR 24066119 24066414 24066119 ID=Msa0284980-mRNA-1:three_prime_utr;Parent=Msa0284980-mRNA-1
Gene Sequence

>Msa0284980

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGAGAAATATGTCAAAAGGTTTTACACCAAGGAACAACATCAACAACTTCATGGTCAAGCAGCAGAAGAAGAAGACTTACAATTAGAAATGCAAAGAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGCCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGGTCAGATCCAGAGTTGCTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAATATTTTGCAGACCCAACAACACTTTTCATTGTTCAACTAGCCTTAATGGGTTGGGTTGAAGGTCGAAGATGGGCCGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCCAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGAGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTAATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCGGGTCATGTCAACATTTTCTCGGCTTTCACTTCAGGGTAG

Protein sequence

>Msa0284980

MALAISSTSLSSFPNREICQKVLHQGTTSTTSWSSSRRRRLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG*