AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649140 MtrunA17_Chr4g0041041 97.727 220 5 0 46 265 164 383 3.15e-157 446
Msa0649140 MtrunA17_Chr3g0131371 57.971 69 29 0 276 344 261 329 7.77e-19 87.4
Msa0649140 MtrunA17_Chr6g0469751 57.812 64 27 0 284 347 106 169 4.04e-15 73.6
Msa0649140 MtrunA17_Chr5g0446781 55.172 58 26 0 287 344 71 128 7.45e-15 72.8
Msa0649140 MtrunA17_Chr5g0431011 60.345 58 23 0 287 344 389 446 1.14e-13 72.0
Msa0649140 MtrunA17_Chr8g0359381 60.345 58 23 0 287 344 737 794 1.41e-13 72.0
Msa0649140 MtrunA17_Chr3g0085661 44.595 74 38 1 271 344 311 381 1.50e-12 68.6
Msa0649140 MtrunA17_Chr4g0002791 60.345 58 23 0 287 344 327 384 1.99e-12 68.2
Msa0649140 MtrunA17_Chr7g0231281 54.386 57 26 0 288 344 10 66 4.76e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGATATACAACAAATATT+TGG 0.245239 4_3:-55733809 Msa0649140:CDS
CTGAGCCACAGCTAGAAAAT+AGG 0.255514 4_3:+55733137 None:intergenic
GGGAGGCTTGGAAGTGGAGG+AGG 0.307533 4_3:-55729222 Msa0649140:CDS
GGAAGTGGAGGAGGAGGTTA+TGG 0.308145 4_3:-55729213 Msa0649140:CDS
AGTCATCTTCATCATCTTCT+TGG 0.325776 4_3:-55733763 Msa0649140:CDS
GAGGTTATGGGCGTGGGAGG+AGG 0.328258 4_3:-55729200 Msa0649140:CDS
ATTACTCATTGTGGTGTTGC+AGG 0.331864 4_3:-55729152 Msa0649140:CDS
CGCAGATAATGCGTGACAAT+TGG 0.343858 4_3:-55733410 Msa0649140:CDS
GTGGGGAGGCTTGGAAGTGG+AGG 0.344809 4_3:-55729225 Msa0649140:CDS
TTCCTTTACTACATTCACTA+TGG 0.352084 4_3:+55732569 None:intergenic
AACCAGCTTCCTTCAGTGTT+TGG 0.362900 4_3:+55731887 None:intergenic
CTTACCGTTTACTTAGAGAT+AGG 0.369485 4_3:-55729066 Msa0649140:CDS
CGAGTACTACTTGACTGATA+TGG 0.380852 4_3:-55731911 Msa0649140:CDS
GAGGAGGTTATGGGCGTGGG+AGG 0.382016 4_3:-55729203 Msa0649140:CDS
ACATTCACTATGGCTCTTGC+AGG 0.387189 4_3:+55732579 None:intergenic
AGGCTTGGAAGTGGAGGAGG+AGG 0.395069 4_3:-55729219 Msa0649140:CDS
ATGGGCGTGGGAGGAGGCCT+TGG 0.399542 4_3:-55729194 Msa0649140:CDS
GTTTGCTATGACAGATAATT+CGG 0.399971 4_3:-55732517 Msa0649140:intron
ACCTGTAGGACCTTTGACTT+TGG 0.401436 4_3:+55732411 None:intergenic
TCTAGCTGTGGCTCAGCATA+AGG 0.402145 4_3:-55733130 Msa0649140:CDS
TGCTCTTCATCAATGTAAAC+AGG 0.408653 4_3:+55731950 None:intergenic
ACAAGATCAAATGATTTAGA+AGG 0.410624 4_3:+55733039 None:intergenic
TAAAATGGATACATGCAAAT+GGG 0.418740 4_3:-55733077 Msa0649140:CDS
GTTGGTGGGTACTCTGTTAG+TGG 0.423084 4_3:-55729091 Msa0649140:CDS
TGGCCGCTTCACGGAGTTCA+AGG 0.423742 4_3:-55734758 Msa0649140:CDS
TCTTGTGTCTATTTCTTATG+TGG 0.429692 4_3:-55733022 Msa0649140:intron
GCCTCCTATCTCTAAGTAAA+CGG 0.435995 4_3:+55729062 None:intergenic
CCCTAGGCACGTGACTTTAA+CGG 0.438446 4_3:-55731836 Msa0649140:CDS
ATAAAATGGATACATGCAAA+TGG 0.451046 4_3:-55733078 Msa0649140:CDS
TGTTGTATATCTTGATTGTT+GGG 0.452470 4_3:+55733818 None:intergenic
GGAGGAGGAGGTTATGGGCG+TGG 0.454760 4_3:-55729207 Msa0649140:CDS
CTAACAGAGTACCCACCAAC+TGG 0.461244 4_3:+55729094 None:intergenic
GAGGTGGGGAGGCTTGGAAG+TGG 0.462344 4_3:-55729228 Msa0649140:CDS
CAAGTAGTACTCGTCAAGAA+AGG 0.463853 4_3:+55731921 None:intergenic
ACCTATGTGAGAATGAAGTT+TGG 0.467347 4_3:-55734778 None:intergenic
GAGGAGGAGGTTATGGGCGT+GGG 0.471460 4_3:-55729206 Msa0649140:CDS
AGGAAGCATTCCGTCTCCTT+CGG 0.475832 4_3:-55732551 Msa0649140:CDS
GCATTCCGTCTCCTTCGGCC+TGG 0.478773 4_3:-55732546 Msa0649140:CDS
GTGGGAGGAGGCCTTGGTAG+CGG 0.480678 4_3:-55729188 Msa0649140:CDS
TGAGCCACAGCTAGAAAATA+GGG 0.482232 4_3:+55733138 None:intergenic
GAAGTGGAGGAGGAGGTTAT+GGG 0.485480 4_3:-55729212 Msa0649140:CDS
TTGTTGTATATCTTGATTGT+TGG 0.487042 4_3:+55733817 None:intergenic
AATGAAGTTTGGCCGCTTCA+CGG 0.489539 4_3:-55734767 Msa0649140:CDS
TTGATTACCTAATAGGCATC+AGG 0.489866 4_3:-55729304 Msa0649140:intron
ATATTGATGATGTGTGGATC+TGG 0.495443 4_3:-55729126 Msa0649140:CDS
GCCGTTAAAGTCACGTGCCT+AGG 0.504069 4_3:+55731835 None:intergenic
CTAGACATTGGATGTTCTGT+GGG 0.504597 4_3:-55733327 Msa0649140:CDS
CATTCACAAACATCTATGAT+TGG 0.507503 4_3:-55733357 Msa0649140:CDS
GCCAAAGTCAAAGGTCCTAC+AGG 0.510737 4_3:-55732412 Msa0649140:intron
AGCCATAGTGAATGTAGTAA+AGG 0.515798 4_3:-55732571 Msa0649140:CDS
GTCATAGCAAACGTGCCTCC+AGG 0.518839 4_3:+55732528 None:intergenic
TTCATCAATGTAAACAGGAC+AGG 0.523632 4_3:+55731955 None:intergenic
TGCCTCCAGGCCGAAGGAGA+CGG 0.527581 4_3:+55732541 None:intergenic
CATTGACTTAGTAGCAGCCT+CGG 0.529201 4_3:+55733476 None:intergenic
CGAGGCTGCTACTAAGTCAA+TGG 0.529702 4_3:-55733475 Msa0649140:CDS
CGCTTCTTCTACTGATGAAG+CGG 0.534196 4_3:+55733434 None:intergenic
AAGTAGTACTCGTCAAGAAA+GGG 0.541395 4_3:+55731922 None:intergenic
CCGTTAAAGTCACGTGCCTA+GGG 0.548980 4_3:+55731836 None:intergenic
ACCGTTTACTTAGAGATAGG+AGG 0.549798 4_3:-55729063 Msa0649140:CDS
TCACAATGACATTGGCCGTA+GGG 0.555452 4_3:+55733274 None:intergenic
TCTAGACATTGGATGTTCTG+TGG 0.556538 4_3:-55733328 Msa0649140:CDS
TGGTCACATGATCCAGTTGG+TGG 0.562150 4_3:-55729106 Msa0649140:CDS
GGCCGCTTCACGGAGTTCAA+GGG 0.563650 4_3:-55734757 Msa0649140:intron
GACCAAACACTGAAGGAAGC+TGG 0.567832 4_3:-55731889 Msa0649140:CDS
ACATGCAAATGGGGAAGACA+CGG 0.570127 4_3:-55733067 Msa0649140:CDS
AACCCTTGAACTCCGTGAAG+CGG 0.571877 4_3:+55734755 None:intergenic
CCTTCTGCAGCCAAAGTCAA+AGG 0.572810 4_3:-55732421 Msa0649140:intron
ATAGGAACAAACTAAGGAGT+AGG 0.573000 4_3:+55729040 None:intergenic
TTCCGTCTCCTTCGGCCTGG+AGG 0.580123 4_3:-55732543 Msa0649140:CDS
ATTGGTGACATTCTAGACAT+TGG 0.582465 4_3:-55733339 Msa0649140:CDS
GTTAAAACTCACAATGACAT+TGG 0.583152 4_3:+55733266 None:intergenic
AGGCCTTGGTAGCGGAGTGT+AGG 0.589614 4_3:-55729180 Msa0649140:CDS
ATAGGCAGCAGCAGAAGCCG+AGG 0.591142 4_3:-55733493 Msa0649140:intron
TAAAGTCACGTGCCTAGGGT+TGG 0.598671 4_3:+55731840 None:intergenic
TCTTGCGGACAAGTTCCCTA+CGG 0.605513 4_3:-55733289 Msa0649140:CDS
AATCCTACACTCCGCTACCA+AGG 0.616626 4_3:+55729177 None:intergenic
AGTAAGCTCAAGATTTCTTG+CGG 0.617617 4_3:-55733304 Msa0649140:CDS
AAAATGGATACATGCAAATG+GGG 0.624426 4_3:-55733076 Msa0649140:CDS
ATCTGGTCACATGATCCAGT+TGG 0.624652 4_3:-55729109 Msa0649140:CDS
AATCAATTCTTACCAACCCT+AGG 0.624884 4_3:-55731852 Msa0649140:CDS
TCTTCTACTGATGAAGCGGT+AGG 0.627521 4_3:+55733438 None:intergenic
CATGCAAATGGGGAAGACAC+GGG 0.629318 4_3:-55733066 Msa0649140:CDS
TGATATGGACCAAACACTGA+AGG 0.631121 4_3:-55731896 Msa0649140:CDS
CAAACGTGCCTCCAGGCCGA+AGG 0.635743 4_3:+55732535 None:intergenic
ACTCATTGTGGTGTTGCAGG+TGG 0.643007 4_3:-55729149 Msa0649140:CDS
GGTCACATGATCCAGTTGGT+GGG 0.666684 4_3:-55729105 Msa0649140:CDS
CTCACAATGACATTGGCCGT+AGG 0.667491 4_3:+55733273 None:intergenic
GCTCAGCATAAGGAAAAGAG+CGG 0.692800 4_3:-55733120 Msa0649140:CDS
AGGTGGATATTGATGATGTG+TGG 0.717676 4_3:-55729132 Msa0649140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATATACAAAGAAAAA+TGG + chr4_3:55732661-55732680 None:intergenic 10.0%
!! TAAAAAAATATTATCAAACT+AGG - chr4_3:55732679-55732698 Msa0649140:intron 10.0%
!! TAAAAATAGATATTACATAT+TGG - chr4_3:55732904-55732923 Msa0649140:intron 10.0%
!!! TAACTTTTTGAAAAATAAAT+TGG + chr4_3:55732938-55732957 None:intergenic 10.0%
!!! ACCAATTTTAAATATTTATA+AGG - chr4_3:55733659-55733678 Msa0649140:intron 10.0%
!!! TCCTTATAAATATTTAAAAT+TGG + chr4_3:55733663-55733682 None:intergenic 10.0%
!! AAGGAAAAAAAATATTTATA+AGG - chr4_3:55733678-55733697 Msa0649140:intron 10.0%
!!! TATTTATAAGGAAATAATTT+TGG - chr4_3:55733690-55733709 Msa0649140:intron 10.0%
!!! TTTTAATATTATAAAAGTGT+AGG - chr4_3:55734464-55734483 Msa0649140:intron 10.0%
!!! AATCAATTTAAGATAATTTT+AGG + chr4_3:55734499-55734518 None:intergenic 10.0%
!!! TATAATAACTTTTTAAAAAG+AGG - chr4_3:55734570-55734589 Msa0649140:intron 10.0%
!! TTAGTCGATTATTTAATATA+GGG + chr4_3:55733018-55733037 None:intergenic 15.0%
!! TTTAGTCGATTATTTAATAT+AGG + chr4_3:55733019-55733038 None:intergenic 15.0%
!!! TAATCCTTTAACATTTTTTT+TGG - chr4_3:55733048-55733067 Msa0649140:CDS 15.0%
!!! TTGGTTTCATAATTAATTTT+TGG - chr4_3:55733078-55733097 Msa0649140:CDS 15.0%
!!! TTTTAATAAATGTAACGAAA+AGG + chr4_3:55733147-55733166 None:intergenic 15.0%
!! AGTGAATAAAAAAAACAATT+TGG - chr4_3:55733841-55733860 Msa0649140:CDS 15.0%
!! AAATGTGAAAGAAAAAAAAA+AGG - chr4_3:55733917-55733936 Msa0649140:intron 15.0%
!! AAACTTAACTTACTAAGTAA+TGG - chr4_3:55729255-55729274 Msa0649140:CDS 20.0%
!! AATACTAAATCACATAAATC+CGG + chr4_3:55729321-55729340 None:intergenic 20.0%
!!! GTGATTTAGTATTTTGAAAA+TGG - chr4_3:55729328-55729347 Msa0649140:intron 20.0%
!!! ATTTAGTATTTTGAAAATGG+TGG - chr4_3:55729331-55729350 Msa0649140:intron 20.0%
!!! TTTAGTATTTTGAAAATGGT+GGG - chr4_3:55729332-55729351 Msa0649140:intron 20.0%
!!! TTAAAGTGATTCCATTATTT+TGG + chr4_3:55729374-55729393 None:intergenic 20.0%
!!! TTTGATTTGAAACAATGTTA+TGG + chr4_3:55729587-55729606 None:intergenic 20.0%
!! ATAACATTGTTTCAAATCAA+AGG - chr4_3:55729586-55729605 Msa0649140:intron 20.0%
!! TAACATTGTTTCAAATCAAA+GGG - chr4_3:55729587-55729606 Msa0649140:intron 20.0%
!!! AACAGTATTTTACAGATTTA+TGG + chr4_3:55729771-55729790 None:intergenic 20.0%
!! TAAATCTGTAAAATACTGTT+AGG - chr4_3:55729771-55729790 Msa0649140:intron 20.0%
!!! CATAACTATTAATCTTTTTC+AGG - chr4_3:55729955-55729974 Msa0649140:intron 20.0%
!! CAAGATATACAACAAATATT+TGG - chr4_3:55730008-55730027 Msa0649140:intron 20.0%
!!! TTTTTGTTTCTTTTGTTCTT+TGG - chr4_3:55730164-55730183 Msa0649140:intron 20.0%
!!! AGATCTTATGATATTTTCTA+TGG + chr4_3:55730291-55730310 None:intergenic 20.0%
!!! CATTTTATAGGATTTTTTCT+AGG + chr4_3:55730727-55730746 None:intergenic 20.0%
!! CTAGAAAAAATCCTATAAAA+TGG - chr4_3:55730725-55730744 Msa0649140:intron 20.0%
!! TATGTATCAATTAATTCACA+TGG + chr4_3:55731131-55731150 None:intergenic 20.0%
!! GGATATATGATTTAATGTAT+TGG + chr4_3:55731614-55731633 None:intergenic 20.0%
!!! CATAATGAATTGAGATTTTA+TGG - chr4_3:55731728-55731747 Msa0649140:intron 20.0%
!!! TTGTTTCTTTTGAATCTTTT+TGG - chr4_3:55732035-55732054 Msa0649140:intron 20.0%
!! ATAATCAAGAATAGGAAATT+AGG - chr4_3:55732154-55732173 Msa0649140:intron 20.0%
!!! TTTTTTTTTGACGAAAAGTA+TGG + chr4_3:55732436-55732455 None:intergenic 20.0%
!! TGAAGTGTATATTAAATAAG+TGG + chr4_3:55732755-55732774 None:intergenic 20.0%
!!! TTCGTTAAATACTTAATTTG+CGG - chr4_3:55732971-55732990 Msa0649140:intron 20.0%
!! GATACCAAAAAAAATGTTAA+AGG + chr4_3:55733055-55733074 None:intergenic 20.0%
!! AAAAGGACTAAAATGTATAT+TGG + chr4_3:55733130-55733149 None:intergenic 20.0%
!!! CTAAAAAAATACATTTTGTG+TGG + chr4_3:55733397-55733416 None:intergenic 20.0%
!! CAAATAAATAGTTAGAATTG+AGG + chr4_3:55733467-55733486 None:intergenic 20.0%
!! GAAAATAGTGAATATATGTT+AGG + chr4_3:55733718-55733737 None:intergenic 20.0%
!! AAAAGTTGTTAATGCAATTA+AGG + chr4_3:55733891-55733910 None:intergenic 20.0%
!! AAAAAAAAGGACCTATATTT+AGG - chr4_3:55733930-55733949 Msa0649140:intron 20.0%
!! AAGACTATAAAAATAGTACT+TGG + chr4_3:55733997-55734016 None:intergenic 20.0%
!! TAGTCTTTCAAAAAAGTAAA+AGG - chr4_3:55734010-55734029 Msa0649140:intron 20.0%
!!! ATTAGTCATTTTACTCAAAA+TGG - chr4_3:55734141-55734160 Msa0649140:intron 20.0%
!! TCTTAAATTGATTACCTAAT+AGG - chr4_3:55734506-55734525 Msa0649140:intron 20.0%
!!! AATAACTTTTTAAAAAGAGG+TGG - chr4_3:55734573-55734592 Msa0649140:intron 20.0%
!!! ATAACTTTTTAAAAAGAGGT+GGG - chr4_3:55734574-55734593 Msa0649140:intron 20.0%
! ACTCTTAAATTCTCATGAAA+AGG - chr4_3:55729087-55729106 Msa0649140:CDS 25.0%
! CTCTTAAATTCTCATGAAAA+GGG - chr4_3:55729088-55729107 Msa0649140:CDS 25.0%
! ATAACTTACACATAGAATCT+CGG + chr4_3:55729171-55729190 None:intergenic 25.0%
!!! TTAGTATTTTGAAAATGGTG+GGG - chr4_3:55729333-55729352 Msa0649140:intron 25.0%
! TGATTATAACCTTTGACAAA+AGG - chr4_3:55729490-55729509 Msa0649140:intron 25.0%
! GATTATAACCTTTGACAAAA+GGG - chr4_3:55729491-55729510 Msa0649140:intron 25.0%
! ATGATTATAACCTTTGACAA+AGG - chr4_3:55729489-55729508 Msa0649140:intron 25.0%
! TGATTATAACCTTTGACAAA+GGG - chr4_3:55729490-55729509 Msa0649140:intron 25.0%
! AACATTGTTTCAAATCAAAG+GGG - chr4_3:55729588-55729607 Msa0649140:intron 25.0%
! TATAATGCACTATAAATGCT+TGG - chr4_3:55729635-55729654 Msa0649140:intron 25.0%
! TGTTGTATATCTTGATTGTT+GGG + chr4_3:55730002-55730021 None:intergenic 25.0%
! TTGTTGTATATCTTGATTGT+TGG + chr4_3:55730003-55730022 None:intergenic 25.0%
!! AGATTTTCCAATGTAATATG+TGG - chr4_3:55730140-55730159 Msa0649140:intron 25.0%
! CAAAAAACCACATATTACAT+TGG + chr4_3:55730150-55730169 None:intergenic 25.0%
! TCGTTAAACAAACTATTATG+TGG - chr4_3:55730225-55730244 Msa0649140:intron 25.0%
! TAAACAAACTATTATGTGGA+TGG - chr4_3:55730229-55730248 Msa0649140:intron 25.0%
! GATCTGTATTATATGATGAT+AGG - chr4_3:55730306-55730325 Msa0649140:intron 25.0%
!! TTTGCATGTATCCATTTTAT+AGG + chr4_3:55730739-55730758 None:intergenic 25.0%
! ATAAAATGGATACATGCAAA+TGG - chr4_3:55730739-55730758 Msa0649140:intron 25.0%
! TAAAATGGATACATGCAAAT+GGG - chr4_3:55730740-55730759 Msa0649140:intron 25.0%
! ACAAGATCAAATGATTTAGA+AGG + chr4_3:55730781-55730800 None:intergenic 25.0%
!! AAATATTAGTCTCTAAACAG+TGG + chr4_3:55730895-55730914 None:intergenic 25.0%
!! AAATGTGTATTTTACTTCCT+AGG - chr4_3:55731006-55731025 Msa0649140:intron 25.0%
! ATATGATCAAGAAGAAAAGA+TGG + chr4_3:55731438-55731457 None:intergenic 25.0%
! TTACTGTTAACCACAATATA+GGG + chr4_3:55731500-55731519 None:intergenic 25.0%
! TTTACTGTTAACCACAATAT+AGG + chr4_3:55731501-55731520 None:intergenic 25.0%
! AGTATTAAGAGTTATGTTAC+AGG + chr4_3:55731682-55731701 None:intergenic 25.0%
!! GAAAGATCTTTAATCAGTTT+TGG + chr4_3:55731756-55731775 None:intergenic 25.0%
! AAGATCTTTCATGTAGTTTA+TGG - chr4_3:55731766-55731785 Msa0649140:intron 25.0%
!!! TTGTTTTTTTCATGTCTTGT+AGG - chr4_3:55731831-55731850 Msa0649140:CDS 25.0%
!! CAACATTTGAGTTTAATGAA+AGG - chr4_3:55732066-55732085 Msa0649140:intron 25.0%
!! AATGAAAGGTTTTACTTGTT+AGG - chr4_3:55732080-55732099 Msa0649140:intron 25.0%
!!! TTGTTTTTTGCTTTGTTCTT+TGG - chr4_3:55732116-55732135 Msa0649140:intron 25.0%
! AATGGTGTATAATCAAGAAT+AGG - chr4_3:55732146-55732165 Msa0649140:intron 25.0%
!! GTTTTATATTTCCAAAACTG+TGG + chr4_3:55732487-55732506 None:intergenic 25.0%
!! AACTAGGATGTCATTTAAAA+TGG - chr4_3:55732695-55732714 Msa0649140:intron 25.0%
!! GATGTCATTTAAAATGGAAA+GGG - chr4_3:55732701-55732720 Msa0649140:intron 25.0%
!! ATGTCATTTAAAATGGAAAG+GGG - chr4_3:55732702-55732721 Msa0649140:intron 25.0%
! ATATGAAAGAGAAATGTAAC+TGG - chr4_3:55732826-55732845 Msa0649140:intron 25.0%
!!! CATTTTTTTTGGTATCACTT+TGG - chr4_3:55733059-55733078 Msa0649140:CDS 25.0%
! TATATTGGAGATGAACTTAA+GGG + chr4_3:55733115-55733134 None:intergenic 25.0%
!! AAAACATAGCGCATTTTATT+TGG - chr4_3:55733322-55733341 Msa0649140:CDS 25.0%
!!! AGTAAAAGGTTTATTTTCAC+CGG - chr4_3:55734024-55734043 Msa0649140:intron 25.0%
! TTGTTAAGAATTGTGTGATA+TGG + chr4_3:55734092-55734111 None:intergenic 25.0%
! TGACTAATAACATATGTGTA+TGG + chr4_3:55734129-55734148 None:intergenic 25.0%
!! ACTTATTGATAGTTGATTAG+TGG + chr4_3:55734423-55734442 None:intergenic 25.0%
!!! TAACTTTTTAAAAAGAGGTG+GGG - chr4_3:55734575-55734594 Msa0649140:intron 25.0%
!! TAGGATTTTATTACTCATTG+TGG - chr4_3:55734656-55734675 Msa0649140:intron 25.0%
TGTAAGATGACACATTAAGA+AGG + chr4_3:55729129-55729148 None:intergenic 30.0%
CTTACAAGTCTCTTTATCAA+TGG - chr4_3:55729143-55729162 Msa0649140:CDS 30.0%
CACTTGTTCTAATGAATAGT+TGG - chr4_3:55729194-55729213 Msa0649140:CDS 30.0%
!! TAGTATTTTGAAAATGGTGG+GGG - chr4_3:55729334-55729353 Msa0649140:intron 30.0%
!! GTTGGTGATTTCCAAAATAA+TGG - chr4_3:55729360-55729379 Msa0649140:intron 30.0%
TCAAAAGTTGTAACTCTTCA+TGG - chr4_3:55729395-55729414 Msa0649140:intron 30.0%
CAAAAGTTGTAACTCTTCAT+GGG - chr4_3:55729396-55729415 Msa0649140:intron 30.0%
TGGGAATCATTCATATACAT+TGG - chr4_3:55729415-55729434 Msa0649140:intron 30.0%
ATACACTTGAATCAATGCAA+AGG + chr4_3:55729528-55729547 None:intergenic 30.0%
ATTAAACATCCCTTTGTCAA+AGG + chr4_3:55729561-55729580 None:intergenic 30.0%
ACTATAAATGCTTGGCATTT+GGG - chr4_3:55729643-55729662 Msa0649140:intron 30.0%
! GATTTAGAGTAAGAGAATGA+TGG + chr4_3:55729710-55729729 None:intergenic 30.0%
ACTGTATATTGGATGCAATA+AGG + chr4_3:55729870-55729889 None:intergenic 30.0%
TGCATCCAATATACAGTTAT+TGG - chr4_3:55729873-55729892 Msa0649140:intron 30.0%
ATCCAATATACAGTTATTGG+TGG - chr4_3:55729876-55729895 Msa0649140:intron 30.0%
TCCAATATACAGTTATTGGT+GGG - chr4_3:55729877-55729896 Msa0649140:intron 30.0%
TGTAAATGTGCATAAACTGT+TGG + chr4_3:55730113-55730132 None:intergenic 30.0%
AAATGCACCTATGATTCAAA+TGG + chr4_3:55730193-55730212 None:intergenic 30.0%
! TTTTCTATGGAATTTCAGCA+AGG + chr4_3:55730278-55730297 None:intergenic 30.0%
CATTCACAAACATCTATGAT+TGG - chr4_3:55730460-55730479 Msa0649140:intron 30.0%
GTTAAAACTCACAATGACAT+TGG + chr4_3:55730554-55730573 None:intergenic 30.0%
TTGATTGATATGTTTGTTCC+AGG - chr4_3:55730642-55730661 Msa0649140:intron 30.0%
TGATTGATATGTTTGTTCCA+GGG - chr4_3:55730643-55730662 Msa0649140:intron 30.0%
AAAATGGATACATGCAAATG+GGG - chr4_3:55730741-55730760 Msa0649140:intron 30.0%
! TCTTGTGTCTATTTCTTATG+TGG - chr4_3:55730795-55730814 Msa0649140:intron 30.0%
GAATCTTGCAATTGAAATCT+AGG - chr4_3:55731033-55731052 Msa0649140:intron 30.0%
TCATGAAACTGCATAAATTG+AGG + chr4_3:55731214-55731233 None:intergenic 30.0%
TTCCTTTACTACATTCACTA+TGG + chr4_3:55731251-55731270 None:intergenic 30.0%
!! GTTTGCTATGACAGATAATT+CGG - chr4_3:55731300-55731319 Msa0649140:intron 30.0%
ATGACATTAGTGTTTGTGAT+AGG + chr4_3:55731368-55731387 None:intergenic 30.0%
AAAGATGGAAAAATACCTGT+AGG + chr4_3:55731423-55731442 None:intergenic 30.0%
GGTATAAATTGTTGTCTAGT+AGG - chr4_3:55731787-55731806 Msa0649140:intron 30.0%
!! ACTTGTTAGGAAGCTTTATT+TGG - chr4_3:55732093-55732112 Msa0649140:intron 30.0%
TTGTTCTTTGGTTACTTGAA+TGG - chr4_3:55732128-55732147 Msa0649140:intron 30.0%
ATTAGGAATGACGTTTAAGA+AGG - chr4_3:55732171-55732190 Msa0649140:intron 30.0%
TGTACTTTCGAATGTTAGAA+TGG - chr4_3:55732223-55732242 Msa0649140:intron 30.0%
! CTTTGTTTGTCTTACGTTAA+AGG - chr4_3:55732276-55732295 Msa0649140:intron 30.0%
!! CTTTAAAGCTATCTACTTCA+CGG - chr4_3:55732299-55732318 Msa0649140:intron 30.0%
ATGATCTTGACTTACTCATT+TGG + chr4_3:55732411-55732430 None:intergenic 30.0%
! AACTGTGGTAATGAAAAGTA+TGG + chr4_3:55732472-55732491 None:intergenic 30.0%
! ACTTTTCATTACCACAGTTT+TGG - chr4_3:55732473-55732492 Msa0649140:intron 30.0%
! GGATGTCATTTAAAATGGAA+AGG - chr4_3:55732700-55732719 Msa0649140:intron 30.0%
! TGTCATTTAAAATGGAAAGG+GGG - chr4_3:55732703-55732722 Msa0649140:intron 30.0%
CTAAAACTACAGTAATAGAG+AGG - chr4_3:55732782-55732801 Msa0649140:intron 30.0%
ACAGTAATAGAGAGGAAAAA+TGG - chr4_3:55732790-55732809 Msa0649140:intron 30.0%
GTATATTGGAGATGAACTTA+AGG + chr4_3:55733116-55733135 None:intergenic 30.0%
GACCTATATTTAGGAATGAA+TGG - chr4_3:55733939-55733958 Msa0649140:intron 30.0%
CTCCATTCATTCCTAAATAT+AGG + chr4_3:55733944-55733963 None:intergenic 30.0%
CACAATTCTTAACAAATCCA+TGG - chr4_3:55734097-55734116 Msa0649140:intron 30.0%
! GTGATGGCATTTTATCTAAA+CGG + chr4_3:55734258-55734277 None:intergenic 30.0%
ATTAAGTTAGAAGAGAGTGA+TGG + chr4_3:55734274-55734293 None:intergenic 30.0%
TACCCCGTAAATTTCTTAAA+CGG - chr4_3:55734394-55734413 Msa0649140:intron 30.0%
TACCGTTTAAGAAATTTACG+GGG + chr4_3:55734399-55734418 None:intergenic 30.0%
CTACCGTTTAAGAAATTTAC+GGG + chr4_3:55734400-55734419 None:intergenic 30.0%
GCTACCGTTTAAGAAATTTA+CGG + chr4_3:55734401-55734420 None:intergenic 30.0%
GAAAAGGGATATATGACACA+AGG - chr4_3:55729103-55729122 Msa0649140:CDS 35.0%
TCATTCCCAAATAGTATGGT+AGG + chr4_3:55729231-55729250 None:intergenic 35.0%
AATTCCATGCCTTCAGATAA+TGG + chr4_3:55729297-55729316 None:intergenic 35.0%
! ATTAAGCACCCTTTTGTCAA+AGG + chr4_3:55729502-55729521 None:intergenic 35.0%
! GGTGTTTTCTCTCATATGAA+GGG - chr4_3:55729609-55729628 Msa0649140:intron 35.0%
CACTATAAATGCTTGGCATT+TGG - chr4_3:55729642-55729661 Msa0649140:intron 35.0%
CTCATGCATTAGAGAATTGA+TGG + chr4_3:55729735-55729754 None:intergenic 35.0%
ATACTGTTAGGAGATACGTT+TGG - chr4_3:55729783-55729802 Msa0649140:intron 35.0%
CCAATATACAGTTATTGGTG+GGG - chr4_3:55729878-55729897 Msa0649140:intron 35.0%
CAATATACAGTTATTGGTGG+GGG - chr4_3:55729879-55729898 Msa0649140:intron 35.0%
ATCGAACCTAAAGGTTAGTA+TGG - chr4_3:55729905-55729924 Msa0649140:intron 35.0%
ATGTAATCTCAAAGCGTATG+GGG + chr4_3:55729934-55729953 None:intergenic 35.0%
CATGTAATCTCAAAGCGTAT+GGG + chr4_3:55729935-55729954 None:intergenic 35.0%
AGTCATCTTCATCATCTTCT+TGG - chr4_3:55730054-55730073 Msa0649140:intron 35.0%
AAACTGTTGGAACTTGTGTT+GGG + chr4_3:55730100-55730119 None:intergenic 35.0%
TAAACTGTTGGAACTTGTGT+TGG + chr4_3:55730101-55730120 None:intergenic 35.0%
TTGGCAACCATTTGAATCAT+AGG - chr4_3:55730183-55730202 Msa0649140:intron 35.0%
! ATTGGTGACATTCTAGACAT+TGG - chr4_3:55730478-55730497 Msa0649140:intron 35.0%
AGTAAGCTCAAGATTTCTTG+CGG - chr4_3:55730513-55730532 Msa0649140:intron 35.0%
! TGTAAAAGAAGCCTTGTGTA+TGG - chr4_3:55730605-55730624 Msa0649140:intron 35.0%
TCATGTACATACCATACACA+AGG + chr4_3:55730619-55730638 None:intergenic 35.0%
GATTGATATGTTTGTTCCAG+GGG - chr4_3:55730644-55730663 Msa0649140:intron 35.0%
GCAGCATTCTACGAATTTAA+CGG + chr4_3:55730846-55730865 None:intergenic 35.0%
AATTGCAAGATTCGTTTCCT+AGG + chr4_3:55731026-55731045 None:intergenic 35.0%
AGCCATAGTGAATGTAGTAA+AGG - chr4_3:55731246-55731265 Msa0649140:intron 35.0%
! GATAGCTTTTCCCTATATTG+TGG - chr4_3:55731487-55731506 Msa0649140:intron 35.0%
TTCATCAATGTAAACAGGAC+AGG + chr4_3:55731865-55731884 None:intergenic 35.0%
TGCTCTTCATCAATGTAAAC+AGG + chr4_3:55731870-55731889 None:intergenic 35.0%
AAGTAGTACTCGTCAAGAAA+GGG + chr4_3:55731898-55731917 None:intergenic 35.0%
AATCAATTCTTACCAACCCT+AGG - chr4_3:55731965-55731984 Msa0649140:CDS 35.0%
AATCCCAAGATGTTTCATTG+AGG + chr4_3:55732015-55732034 None:intergenic 35.0%
CTGTGAACATTATCCAATCT+TGG - chr4_3:55732327-55732346 Msa0649140:intron 35.0%
! CTTGTATTGACAACCAAGAT+TGG + chr4_3:55732343-55732362 None:intergenic 35.0%
CAATCTTGGTTGTCAATACA+AGG - chr4_3:55732341-55732360 Msa0649140:intron 35.0%
ACTATATTGTCAAGGATGGA+GGG + chr4_3:55732521-55732540 None:intergenic 35.0%
AACTATATTGTCAAGGATGG+AGG + chr4_3:55732522-55732541 None:intergenic 35.0%
GTCAACTATATTGTCAAGGA+TGG + chr4_3:55732525-55732544 None:intergenic 35.0%
CAGAGTCAACTATATTGTCA+AGG + chr4_3:55732529-55732548 None:intergenic 35.0%
! GTCATTTAAAATGGAAAGGG+GGG - chr4_3:55732704-55732723 Msa0649140:intron 35.0%
TAGGGTCATGATACATGTTA+AGG + chr4_3:55733000-55733019 None:intergenic 35.0%
TATGTGTATGGTTTAAGCCA+TGG + chr4_3:55734117-55734136 None:intergenic 35.0%
ACAACATTAAAGGATCCACA+AGG - chr4_3:55734333-55734352 Msa0649140:intron 35.0%
TTGATTACCTAATAGGCATC+AGG - chr4_3:55734513-55734532 Msa0649140:intron 35.0%
! TTTAAGACCTGATGCCTATT+AGG + chr4_3:55734523-55734542 None:intergenic 35.0%
!! ATATTGATGATGTGTGGATC+TGG - chr4_3:55734691-55734710 Msa0649140:intron 35.0%
CTTACCGTTTACTTAGAGAT+AGG - chr4_3:55734751-55734770 Msa0649140:intron 35.0%
AGCTTGCCTACCATACTATT+TGG - chr4_3:55729222-55729241 Msa0649140:CDS 40.0%
GCTTGCCTACCATACTATTT+GGG - chr4_3:55729223-55729242 Msa0649140:CDS 40.0%
TCGCTCATTCCCAAATAGTA+TGG + chr4_3:55729235-55729254 None:intergenic 40.0%
GATACCATTATCTGAAGGCA+TGG - chr4_3:55729290-55729309 Msa0649140:CDS 40.0%
! ATCTGAAGGCATGGAATTTC+CGG - chr4_3:55729299-55729318 Msa0649140:intron 40.0%
! GGGTGTTTTCTCTCATATGA+AGG - chr4_3:55729608-55729627 Msa0649140:intron 40.0%
CTAATGCATGAGTGAATTGC+TGG - chr4_3:55729743-55729762 Msa0649140:intron 40.0%
AGGAACTCATAGTATCCTGA+AGG - chr4_3:55729828-55729847 Msa0649140:intron 40.0%
GGAACTCATAGTATCCTGAA+GGG - chr4_3:55729829-55729848 Msa0649140:intron 40.0%
GAACTCATAGTATCCTGAAG+GGG - chr4_3:55729830-55729849 Msa0649140:intron 40.0%
TGGATGCAATAAGGAATGAC+CGG + chr4_3:55729861-55729880 None:intergenic 40.0%
CCCCACCAATAACTGTATAT+TGG + chr4_3:55729881-55729900 None:intergenic 40.0%
GCATGTAATCTCAAAGCGTA+TGG + chr4_3:55729936-55729955 None:intergenic 40.0%
AACTGTTGGAACTTGTGTTG+GGG + chr4_3:55730099-55730118 None:intergenic 40.0%
TCTAGACATTGGATGTTCTG+TGG - chr4_3:55730489-55730508 Msa0649140:intron 40.0%
CTAGACATTGGATGTTCTGT+GGG - chr4_3:55730490-55730509 Msa0649140:intron 40.0%
TGAGCCACAGCTAGAAAATA+GGG + chr4_3:55730682-55730701 None:intergenic 40.0%
GAATTTAACGGAGGACTAAG+GGG + chr4_3:55730834-55730853 None:intergenic 40.0%
CGAATTTAACGGAGGACTAA+GGG + chr4_3:55730835-55730854 None:intergenic 40.0%
ACGAATTTAACGGAGGACTA+AGG + chr4_3:55730836-55730855 None:intergenic 40.0%
GCATTCTACGAATTTAACGG+AGG + chr4_3:55730843-55730862 None:intergenic 40.0%
! CGTTCAGCTGTATGTTGTTT+AGG + chr4_3:55731085-55731104 None:intergenic 40.0%
AACAACATACAGCTGAACGA+TGG - chr4_3:55731086-55731105 Msa0649140:intron 40.0%
TACTAGAATCTGCGTCTAGT+AGG + chr4_3:55731635-55731654 None:intergenic 40.0%
CAAGTAGTACTCGTCAAGAA+AGG + chr4_3:55731899-55731918 None:intergenic 40.0%
CGAGTACTACTTGACTGATA+TGG - chr4_3:55731906-55731925 Msa0649140:CDS 40.0%
TGATATGGACCAAACACTGA+AGG - chr4_3:55731921-55731940 Msa0649140:CDS 40.0%
TGTGCCTCAATGAAACATCT+TGG - chr4_3:55732008-55732027 Msa0649140:intron 40.0%
GTGCCTCAATGAAACATCTT+GGG - chr4_3:55732009-55732028 Msa0649140:intron 40.0%
TAGAATGGATGAGCAGCTTA+AGG - chr4_3:55732238-55732257 Msa0649140:intron 40.0%
AGAATGGATGAGCAGCTTAA+GGG - chr4_3:55732239-55732258 Msa0649140:intron 40.0%
TGGTTGTCAATACAAGGTCA+CGG - chr4_3:55732347-55732366 Msa0649140:intron 40.0%
! ATTTAAAATGGAAAGGGGGG+AGG - chr4_3:55732707-55732726 Msa0649140:intron 40.0%
! TTTAAAATGGAAAGGGGGGA+GGG - chr4_3:55732708-55732727 Msa0649140:intron 40.0%
GTCGAGTAACTTATCATCGT+AGG - chr4_3:55734054-55734073 Msa0649140:intron 40.0%
TCAAAATGGCTTTCCAAGTG+TGG - chr4_3:55734155-55734174 Msa0649140:intron 40.0%
GCAAAATGTTACTCCACACT+TGG + chr4_3:55734171-55734190 None:intergenic 40.0%
! AAATTTACGGGGTATCCTCT+AGG + chr4_3:55734388-55734407 None:intergenic 40.0%
!! CTTTTTAAAAAGAGGTGGGG+AGG - chr4_3:55734578-55734597 Msa0649140:intron 40.0%
!! ATTACTCATTGTGGTGTTGC+AGG - chr4_3:55734665-55734684 Msa0649140:intron 40.0%
!! AGGTGGATATTGATGATGTG+TGG - chr4_3:55734685-55734704 Msa0649140:intron 40.0%
ACCGTTTACTTAGAGATAGG+AGG - chr4_3:55734754-55734773 Msa0649140:intron 40.0%
GCCTCCTATCTCTAAGTAAA+CGG + chr4_3:55734758-55734777 None:intergenic 40.0%
CGCGAGATACCATTATCTGA+AGG - chr4_3:55729285-55729304 Msa0649140:CDS 45.0%
! TGAAAATGGTGGGGGATTGT+TGG - chr4_3:55729342-55729361 Msa0649140:intron 45.0%
CTTGGCATTTGGGCATTAGT+TGG - chr4_3:55729653-55729672 Msa0649140:intron 45.0%
! GTTAGGAGATACGTTTGGTG+TGG - chr4_3:55729788-55729807 Msa0649140:intron 45.0%
TGGTTGTGCAATACACGTCA+AGG - chr4_3:55729808-55729827 Msa0649140:intron 45.0%
GGGTTGCCATACTAACCTTT+AGG + chr4_3:55729914-55729933 None:intergenic 45.0%
ACTGTTGGAACTTGTGTTGG+GGG + chr4_3:55730098-55730117 None:intergenic 45.0%
!! CATTGACTTAGTAGCAGCCT+CGG + chr4_3:55730344-55730363 None:intergenic 45.0%
TCTTCTACTGATGAAGCGGT+AGG + chr4_3:55730382-55730401 None:intergenic 45.0%
CGCTTCTTCTACTGATGAAG+CGG + chr4_3:55730386-55730405 None:intergenic 45.0%
CGCAGATAATGCGTGACAAT+TGG - chr4_3:55730407-55730426 Msa0649140:intron 45.0%
TCACAATGACATTGGCCGTA+GGG + chr4_3:55730546-55730565 None:intergenic 45.0%
!!! GTCACCCTATTTTCTAGCTG+TGG - chr4_3:55730675-55730694 Msa0649140:intron 45.0%
CTGAGCCACAGCTAGAAAAT+AGG + chr4_3:55730683-55730702 None:intergenic 45.0%
GCTCAGCATAAGGAAAAGAG+CGG - chr4_3:55730697-55730716 Msa0649140:intron 45.0%
ACATGCAAATGGGGAAGACA+CGG - chr4_3:55730750-55730769 Msa0649140:intron 45.0%
! GTTTAGGACTTGTGACTTGC+AGG + chr4_3:55731069-55731088 None:intergenic 45.0%
ACATTCACTATGGCTCTTGC+AGG + chr4_3:55731241-55731260 None:intergenic 45.0%
! ACCTGTAGGACCTTTGACTT+TGG + chr4_3:55731409-55731428 None:intergenic 45.0%
AACCAGCTTCCTTCAGTGTT+TGG + chr4_3:55731933-55731952 None:intergenic 45.0%
GAATGGATGAGCAGCTTAAG+GGG - chr4_3:55732240-55732259 Msa0649140:intron 45.0%
CTTGACTTACTCATTTGGCG+AGG + chr4_3:55732406-55732425 None:intergenic 45.0%
TTAAAATGGAAAGGGGGGAG+GGG - chr4_3:55732709-55732728 Msa0649140:intron 45.0%
GCACGCAGCAACAACATTAA+AGG - chr4_3:55734323-55734342 Msa0649140:intron 45.0%
TAAAGGATCCACAAGGCTTG+AGG - chr4_3:55734340-55734359 Msa0649140:intron 45.0%
AAAGGATCCACAAGGCTTGA+GGG - chr4_3:55734341-55734360 Msa0649140:intron 45.0%
GATTAATCCCTCAAGCCTTG+TGG + chr4_3:55734351-55734370 None:intergenic 45.0%
ATCTGGTCACATGATCCAGT+TGG - chr4_3:55734708-55734727 Msa0649140:intron 45.0%
!! TTAAAATAAAAATAAAACTT+AGG + chr4_3:55733293-55733312 None:intergenic 5.0%
!!! TTTATTTTTATTTTAATTCT+AGG - chr4_3:55733297-55733316 Msa0649140:CDS 5.0%
!!! TAATCAAATAATTTTTTTTA+GGG + chr4_3:55733625-55733644 None:intergenic 5.0%
!!! TTAATCAAATAATTTTTTTT+AGG + chr4_3:55733626-55733645 None:intergenic 5.0%
!! TTATAATCATATTAAAAAAA+TGG + chr4_3:55734193-55734212 None:intergenic 5.0%
AACCCTTGAACTCCGTGAAG+CGG + chr4_3:55729065-55729084 None:intergenic 50.0%
CGAGGCTGCTACTAAGTCAA+TGG - chr4_3:55730342-55730361 Msa0649140:intron 50.0%
TCTTGCGGACAAGTTCCCTA+CGG - chr4_3:55730528-55730547 Msa0649140:intron 50.0%
CTCACAATGACATTGGCCGT+AGG + chr4_3:55730547-55730566 None:intergenic 50.0%
TCTAGCTGTGGCTCAGCATA+AGG - chr4_3:55730687-55730706 Msa0649140:intron 50.0%
CATGCAAATGGGGAAGACAC+GGG - chr4_3:55730751-55730770 Msa0649140:intron 50.0%
!! AGGAAGCATTCCGTCTCCTT+CGG - chr4_3:55731266-55731285 Msa0649140:intron 50.0%
! CCTTTGACTTTGGCTGCAGA+AGG + chr4_3:55731399-55731418 None:intergenic 50.0%
CCTTCTGCAGCCAAAGTCAA+AGG - chr4_3:55731396-55731415 Msa0649140:intron 50.0%
GCCAAAGTCAAAGGTCCTAC+AGG - chr4_3:55731405-55731424 Msa0649140:intron 50.0%
GACCAAACACTGAAGGAAGC+TGG - chr4_3:55731928-55731947 Msa0649140:CDS 50.0%
TAAAGTCACGTGCCTAGGGT+TGG + chr4_3:55731980-55731999 None:intergenic 50.0%
CCGTTAAAGTCACGTGCCTA+GGG + chr4_3:55731984-55732003 None:intergenic 50.0%
CCCTAGGCACGTGACTTTAA+CGG - chr4_3:55731981-55732000 Msa0649140:intron 50.0%
ATCCTCTAGGCGCGAAATTG+CGG + chr4_3:55734375-55734394 None:intergenic 50.0%
TAAAAAGAGGTGGGGAGGCT+TGG - chr4_3:55734583-55734602 Msa0649140:intron 50.0%
GAAGTGGAGGAGGAGGTTAT+GGG - chr4_3:55734605-55734624 Msa0649140:intron 50.0%
AATCCTACACTCCGCTACCA+AGG + chr4_3:55734643-55734662 None:intergenic 50.0%
!! ACTCATTGTGGTGTTGCAGG+TGG - chr4_3:55734668-55734687 Msa0649140:intron 50.0%
TGGTCACATGATCCAGTTGG+TGG - chr4_3:55734711-55734730 Msa0649140:intron 50.0%
GGTCACATGATCCAGTTGGT+GGG - chr4_3:55734712-55734731 Msa0649140:intron 50.0%
! CTAACAGAGTACCCACCAAC+TGG + chr4_3:55734726-55734745 None:intergenic 50.0%
! GTTGGTGGGTACTCTGTTAG+TGG - chr4_3:55734726-55734745 Msa0649140:intron 50.0%
GTATCCTGAAGGGGATTCGC+CGG - chr4_3:55729839-55729858 Msa0649140:intron 55.0%
TGGGGGCGAATCGAACCTAA+AGG - chr4_3:55729896-55729915 Msa0649140:intron 55.0%
AGGGTGACATATCTAGCCCC+TGG + chr4_3:55730663-55730682 None:intergenic 55.0%
GTCATAGCAAACGTGCCTCC+AGG + chr4_3:55731292-55731311 None:intergenic 55.0%
GCCGTTAAAGTCACGTGCCT+AGG + chr4_3:55731985-55732004 None:intergenic 55.0%
GGAAGTGGAGGAGGAGGTTA+TGG - chr4_3:55734604-55734623 Msa0649140:intron 55.0%
TGGCCGCTTCACGGAGTTCA+AGG - chr4_3:55729059-55729078 Msa0649140:CDS 60.0%
GGCCGCTTCACGGAGTTCAA+GGG - chr4_3:55729060-55729079 Msa0649140:CDS 60.0%
ATGACCGGCGAATCCCCTTC+AGG + chr4_3:55729846-55729865 None:intergenic 60.0%
ATAGGCAGCAGCAGAAGCCG+AGG - chr4_3:55730324-55730343 Msa0649140:intron 60.0%
AAATGGAAAGGGGGGAGGGG+AGG - chr4_3:55732712-55732731 Msa0649140:intron 60.0%
CTCCGCAATTTCGCGCCTAG+AGG - chr4_3:55734370-55734389 Msa0649140:intron 60.0%
AGGCTTGGAAGTGGAGGAGG+AGG - chr4_3:55734598-55734617 Msa0649140:intron 60.0%
GAGGAGGAGGTTATGGGCGT+GGG - chr4_3:55734611-55734630 Msa0649140:intron 60.0%
!! AGGCCTTGGTAGCGGAGTGT+AGG - chr4_3:55734637-55734656 Msa0649140:intron 60.0%
GCATTCCGTCTCCTTCGGCC+TGG - chr4_3:55731271-55731290 Msa0649140:intron 65.0%
TTCCGTCTCCTTCGGCCTGG+AGG - chr4_3:55731274-55731293 Msa0649140:intron 65.0%
TGCCTCCAGGCCGAAGGAGA+CGG + chr4_3:55731279-55731298 None:intergenic 65.0%
CAAACGTGCCTCCAGGCCGA+AGG + chr4_3:55731285-55731304 None:intergenic 65.0%
GAGGTGGGGAGGCTTGGAAG+TGG - chr4_3:55734589-55734608 Msa0649140:intron 65.0%
GTGGGGAGGCTTGGAAGTGG+AGG - chr4_3:55734592-55734611 Msa0649140:intron 65.0%
GGGAGGCTTGGAAGTGGAGG+AGG - chr4_3:55734595-55734614 Msa0649140:intron 65.0%
GGAGGAGGAGGTTATGGGCG+TGG - chr4_3:55734610-55734629 Msa0649140:intron 65.0%
GAGGAGGTTATGGGCGTGGG+AGG - chr4_3:55734614-55734633 Msa0649140:intron 65.0%
GAGGTTATGGGCGTGGGAGG+AGG - chr4_3:55734617-55734636 Msa0649140:intron 65.0%
GTGGGAGGAGGCCTTGGTAG+CGG - chr4_3:55734629-55734648 Msa0649140:intron 65.0%
ATGGGCGTGGGAGGAGGCCT+TGG - chr4_3:55734623-55734642 Msa0649140:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55729051 55734788 55729051 ID=Msa0649140;Name=Msa0649140
chr4_3 mRNA 55729051 55734788 55729051 ID=Msa0649140-mRNA-1;Parent=Msa0649140;Name=Msa0649140-mRNA-1;_AED=0.56;_eAED=0.56;_QI=0|0.57|0.5|0.75|1|1|8|0|351
chr4_3 exon 55734758 55734788 55734758 ID=Msa0649140-mRNA-1:exon:14368;Parent=Msa0649140-mRNA-1
chr4_3 exon 55733759 55733862 55733759 ID=Msa0649140-mRNA-1:exon:14367;Parent=Msa0649140-mRNA-1
chr4_3 exon 55733278 55733511 55733278 ID=Msa0649140-mRNA-1:exon:14366;Parent=Msa0649140-mRNA-1
chr4_3 exon 55733023 55733175 55733023 ID=Msa0649140-mRNA-1:exon:14365;Parent=Msa0649140-mRNA-1
chr4_3 exon 55732518 55732613 55732518 ID=Msa0649140-mRNA-1:exon:14364;Parent=Msa0649140-mRNA-1
chr4_3 exon 55732413 55732433 55732413 ID=Msa0649140-mRNA-1:exon:14363;Parent=Msa0649140-mRNA-1
chr4_3 exon 55731831 55731986 55731831 ID=Msa0649140-mRNA-1:exon:14362;Parent=Msa0649140-mRNA-1
chr4_3 exon 55729051 55729311 55729051 ID=Msa0649140-mRNA-1:exon:14361;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55734758 55734788 55734758 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55733759 55733862 55733759 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55733278 55733511 55733278 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55733023 55733175 55733023 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55732518 55732613 55732518 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55732413 55732433 55732413 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55731831 55731986 55731831 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
chr4_3 CDS 55729051 55729311 55729051 ID=Msa0649140-mRNA-1:cds;Parent=Msa0649140-mRNA-1
Gene Sequence

>Msa0649140

ATGAAGTTTGGCCGCTTCACGGAGTTCAAGGGTTTCAAATATAGCAGCATCTTCCCAACAATCAAGATATACAACAAATATTTGGAATTTATGTGCACACTTCATCATAGTCATCTTCATCATCTTCTTGGTCAAGCAGCAGCAGAAGCCGAGGCTGCTACTAAGTCAATGGCAAGACGAGCGATTCCTACCGCTTCATCAGTAGAAGAAGCGACGCAGATAATGCGTGACAATTGGCTTAATGCAATTGAACAACATCATCTACAGCATTCACAAACATCTATGATTGGTGACATTCTAGACATTGGATGTTCTGTGGGAGTAAGCTCAAGATTTCTTGCGGACAAGTTCCCTACGGCCAATGTCATTGGGCTAGATATGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGCGGAACGCCTAGAAAAAATCCTATAAAATGGATACATGCAAATGGGGAAGACACGGGCTTGCCTTCTAAATCATTTGATCTTGTGTCTATTTCTTATGTGTTTCATGAATGTCCTGCAAGAGCCATAGTGAATGTAGTAAAGGAAGCATTCCGTCTCCTTCGGCCTGGAGGCACGTTTGCTATGACAGATAATTCGCCAAAGTCAAAGGTCCTACAGGAGTTGTCTCCTGTCCTGTTTACATTGATGAAGAGCACAGAACCCTTTCTTGACGAGTACTACTTGACTGATATGGACCAAACACTGAAGGAAGCTGGTTTCGTGAACATAAAATCAATTCTTACCAACCCTAGGCACGTGACTTTAACGGCTACTGCATCAGGTCTTAAATGTTTAAGAGCTCATGTAGAAGATAGTTATAATAACTTTTTAAAAAGAGGTGGGGAGGCTTGGAAGTGGAGGAGGAGGTTATGGGCGTGGGAGGAGGCCTTGGTAGCGGAGTGTAGGATTTTATTACTCATTGTGGTGTTGCAGGTGGATATTGATGATGTGTGGATCTGGTCACATGATCCAGTTGGTGGGTACTCTGTTAGTGGAGCTTACCGTTTACTTAGAGATAGGAGGCCTACTCCTTAG

Protein sequence

>Msa0649140

MKFGRFTEFKGFKYSSIFPTIKIYNKYLEFMCTLHHSHLHHLLGQAAAEAEAATKSMARRAIPTASSVEEATQIMRDNWLNAIEQHHLQHSQTSMIGDILDIGCSVGVSSRFLADKFPTANVIGLDMSPYFLAVAQHKEKSGTPRKNPIKWIHANGEDTGLPSKSFDLVSISYVFHECPARAIVNVVKEAFRLLRPGGTFAMTDNSPKSKVLQELSPVLFTLMKSTEPFLDEYYLTDMDQTLKEAGFVNIKSILTNPRHVTLTATASGLKCLRAHVEDSYNNFLKRGGEAWKWRRRLWAWEEALVAECRILLLIVVLQVDIDDVWIWSHDPVGGYSVSGAYRLLRDRRPTP*