AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0058970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058970 MtrunA17_Chr1g0157681 97.692 130 3 0 1 130 1 130 4.61e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058970 AT1G30380.1 82.443 131 21 2 1 130 1 130 2.25e-73 215

Find 71 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCGTACTTAAAACATTAT+TGG 0.164050 1_2:-15641719 Msa0058970:three_prime_UTR
TCTTTCTTAACTGTAATATT+TGG 0.177621 1_2:-15641911 Msa0058970:three_prime_UTR
TTGAACTATCGAGTCACTTA+TGG 0.244374 1_2:+15641798 None:intergenic
ATTGGTGTTGGTGTTGTTCT+TGG 0.264103 1_2:-15642046 Msa0058970:CDS
AACATTGGTGCATTGTAAAA+AGG 0.282224 1_2:-15642016 Msa0058970:exon
ATCTTCCAGCAAACAACATT+AGG 0.298751 1_2:+15642206 None:intergenic
ATCAACTCGGTGATCGTTCT+AGG 0.318272 1_2:+15641756 None:intergenic
TTTCCCTTGCGCCTTGTCAT+AGG 0.324595 1_2:+15642568 None:intergenic
GCGCAAGGGAAAGGGTGCTT+TGG 0.345906 1_2:-15642557 Msa0058970:CDS
GTTCACCCTTGCTGATACTT+TGG 0.359682 1_2:-15642092 Msa0058970:CDS
GCTCTCATAGTTTGAACAAA+TGG 0.363665 1_2:-15642917 Msa0058970:exon
GATCGTTCTAGGGAGGGTAT+TGG 0.368468 1_2:+15641767 None:intergenic
TTGCAGACTGGTGACCCAGC+TGG 0.370604 1_2:-15642115 Msa0058970:CDS
CGCAAGGGAAAGGGTGCTTT+GGG 0.371284 1_2:-15642556 Msa0058970:CDS
ATGATTGAATCGCATTGAAT+TGG 0.373378 1_2:+15641827 None:intergenic
ACCTTCTCCAATCCAGGGTT+TGG 0.379409 1_2:-15642839 Msa0058970:intron
ATGTTGTTTGCTGGAAGATT+TGG 0.379579 1_2:-15642202 Msa0058970:CDS
TTGAAATCATACCACATTAG+TGG 0.382365 1_2:+15642507 None:intergenic
TACTTAAAACATTATTGGTT+TGG 0.383409 1_2:-15641714 Msa0058970:three_prime_UTR
GGAGTTCGTTGTGACTTCAT+TGG 0.392047 1_2:-15642535 Msa0058970:CDS
TCTTCCAGCAAACAACATTA+GGG 0.393888 1_2:+15642207 None:intergenic
ACAACCCTAATGTTGTTTGC+TGG 0.398888 1_2:-15642211 Msa0058970:CDS
ATCGTTCTAGGGAGGGTATT+GGG 0.402039 1_2:+15641768 None:intergenic
TTACAGTTAAGAAAGAATAA+AGG 0.404566 1_2:+15641918 None:intergenic
GTTGCTTTCCTGTTTGCTGA+TGG 0.410830 1_2:+15642172 None:intergenic
CCTTGCGCCTTGTCATAGGT+TGG 0.425942 1_2:+15642572 None:intergenic
TGCAGACTGGTGACCCAGCT+GGG 0.430536 1_2:-15642114 Msa0058970:CDS
GATTGGCTCCATCAGCAAAC+AGG 0.437905 1_2:-15642180 Msa0058970:CDS
TCAGCAAGGGTGAACCCAGC+TGG 0.438597 1_2:+15642100 None:intergenic
CTTGCGCCTTGTCATAGGTT+GGG 0.439768 1_2:+15642573 None:intergenic
GGATGACTCGATTGTATCAC+TGG 0.446726 1_2:+15641848 None:intergenic
ACTCAAACCTTCTCCAATCC+AGG 0.448474 1_2:-15642845 Msa0058970:CDS
TAAATTACCAAACCCTGGAT+TGG 0.449660 1_2:+15642832 None:intergenic
ACAACTTTGCCTCAATTCAC+TGG 0.462189 1_2:-15642880 Msa0058970:CDS
AGCAACAGCAGGACTAAAGC+TGG 0.487183 1_2:-15642155 Msa0058970:CDS
GATTGTATCACTGGGTCTCT+AGG 0.493917 1_2:+15641857 None:intergenic
GTTTGCTGGAAGATTTGGAT+TGG 0.494741 1_2:-15642197 Msa0058970:CDS
AAGAAGTAAGCAGAATCTAA+TGG 0.501082 1_2:+15643029 None:intergenic
TATGACAAGGCGCAAGGGAA+AGG 0.505007 1_2:-15642566 Msa0058970:CDS
ACTTTGGCCTGTGGAACTGT+TGG 0.509321 1_2:-15642076 Msa0058970:CDS
ATGACAAGGCGCAAGGGAAA+GGG 0.519777 1_2:-15642565 Msa0058970:CDS
ACCAAACCCTGGATTGGAGA+AGG 0.524947 1_2:+15642838 None:intergenic
CTTGCTGATACTTTGGCCTG+TGG 0.531365 1_2:-15642085 Msa0058970:CDS
GGAACTGTTGGACACATCAT+TGG 0.534067 1_2:-15642064 Msa0058970:CDS
GTTCTTGGTCTTAAGAACAT+TGG 0.536798 1_2:-15642031 Msa0058970:CDS
AGGGACTCAGGCTTGCAGAC+TGG 0.536809 1_2:-15642127 Msa0058970:CDS
CAGGACTAAAGCTGGAGACA+AGG 0.539368 1_2:-15642147 Msa0058970:CDS
AGAATAAAGGTTAAGTCTCA+AGG 0.539816 1_2:+15641931 None:intergenic
TGCTACCAAGTGATTACTTG+AGG 0.546307 1_2:-15641680 Msa0058970:three_prime_UTR
ATTGGAGAAGGTTTGAGTTG+TGG 0.559160 1_2:+15642850 None:intergenic
AAGCTGGAGACAAGGGACTC+AGG 0.559360 1_2:-15642139 Msa0058970:CDS
GTGGTTAAATTACCAAACCC+TGG 0.566023 1_2:+15642827 None:intergenic
CAGCAAGGGTGAACCCAGCT+GGG 0.567280 1_2:+15642101 None:intergenic
CTCGGTGATCGTTCTAGGGA+GGG 0.575286 1_2:+15641761 None:intergenic
TCAACTCGGTGATCGTTCTA+GGG 0.576034 1_2:+15641757 None:intergenic
GATGTGTCCAACAGTTCCAC+AGG 0.576438 1_2:+15642069 None:intergenic
CTCAAACCTTCTCCAATCCA+GGG 0.579564 1_2:-15642844 Msa0058970:CDS
CATTGGTTCATCCACTAATG+TGG 0.586749 1_2:-15642518 Msa0058970:intron
AGGACTAAAGCTGGAGACAA+GGG 0.595838 1_2:-15642146 Msa0058970:CDS
CCAACCTATGACAAGGCGCA+AGG 0.600144 1_2:-15642572 Msa0058970:CDS
CACAGGCCAAAGTATCAGCA+AGG 0.601389 1_2:+15642086 None:intergenic
GGTCTAAGACCAGTGAATTG+AGG 0.606924 1_2:+15642871 None:intergenic
AGAATCCTCAAGTAATCACT+TGG 0.608857 1_2:+15641675 None:intergenic
GTTGGACACATCATTGGTGT+TGG 0.612231 1_2:-15642058 Msa0058970:CDS
GCAAACAGGAAAGCAACAGC+AGG 0.614247 1_2:-15642166 Msa0058970:CDS
CAACCTATGACAAGGCGCAA+GGG 0.619501 1_2:-15642571 Msa0058970:CDS
ACTCGGTGATCGTTCTAGGG+AGG 0.635826 1_2:+15641760 None:intergenic
ACAGGCCAAAGTATCAGCAA+GGG 0.672894 1_2:+15642087 None:intergenic
TTGCTGCCCAACCTATGACA+AGG 0.674324 1_2:-15642579 Msa0058970:CDS
GATGACTCGATTGTATCACT+GGG 0.704301 1_2:+15641849 None:intergenic
ACATGTTGGACAGATTATGG+TGG 0.710941 1_2:-15642239 Msa0058970:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_2:15642025-15642044 None:intergenic 10.0%
!!! TACTGTATATATTTAAATTT+TGG - chr1_2:15642064-15642083 Msa0058970:CDS 10.0%
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_2:15642025-15642044 None:intergenic 10.0%
!!! TACTGTATATATTTAAATTT+TGG - chr1_2:15642064-15642083 Msa0058970:CDS 10.0%
!!! ATTCATTTTTGTAAATTGTA+TGG + chr1_2:15641993-15642012 None:intergenic 15.0%
!! TTTAAATATATACAGTATGA+AGG + chr1_2:15642061-15642080 None:intergenic 15.0%
!!! TGTTTATTTTTTTTATGTGA+AGG - chr1_2:15642111-15642130 Msa0058970:CDS 15.0%
!!! ATTCATTTTTGTAAATTGTA+TGG + chr1_2:15641993-15642012 None:intergenic 15.0%
!! TTTAAATATATACAGTATGA+AGG + chr1_2:15642061-15642080 None:intergenic 15.0%
!!! TGTTTATTTTTTTTATGTGA+AGG - chr1_2:15642111-15642130 Msa0058970:CDS 15.0%
!! TATTCTATATACTTACTTCT+TGG - chr1_2:15641966-15641985 Msa0058970:three_prime_UTR 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_2:15642241-15642260 None:intergenic 20.0%
!! AAAACTATACATATCATCAT+TGG + chr1_2:15642387-15642406 None:intergenic 20.0%
!! TTACAGTTAAGAAAGAATAA+AGG + chr1_2:15642798-15642817 None:intergenic 20.0%
!! TCTTTCTTAACTGTAATATT+TGG - chr1_2:15642802-15642821 Msa0058970:intron 20.0%
!!! TACTTAAAACATTATTGGTT+TGG - chr1_2:15642999-15643018 Msa0058970:five_prime_UTR 20.0%
!! TATTCTATATACTTACTTCT+TGG - chr1_2:15641966-15641985 Msa0058970:three_prime_UTR 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_2:15642241-15642260 None:intergenic 20.0%
!! AAAACTATACATATCATCAT+TGG + chr1_2:15642387-15642406 None:intergenic 20.0%
!! TTACAGTTAAGAAAGAATAA+AGG + chr1_2:15642798-15642817 None:intergenic 20.0%
!! TCTTTCTTAACTGTAATATT+TGG - chr1_2:15642802-15642821 Msa0058970:intron 20.0%
!!! TACTTAAAACATTATTGGTT+TGG - chr1_2:15642999-15643018 Msa0058970:five_prime_UTR 20.0%
! AAGTTACAAATTCTAACAAG+TGG + chr1_2:15642439-15642458 None:intergenic 25.0%
!!! TAGTGTTTTAACAATCAACT+CGG + chr1_2:15642973-15642992 None:intergenic 25.0%
! CATCGTACTTAAAACATTAT+TGG - chr1_2:15642994-15643013 Msa0058970:five_prime_UTR 25.0%
! AAGTTACAAATTCTAACAAG+TGG + chr1_2:15642439-15642458 None:intergenic 25.0%
!!! TAGTGTTTTAACAATCAACT+CGG + chr1_2:15642973-15642992 None:intergenic 25.0%
! CATCGTACTTAAAACATTAT+TGG - chr1_2:15642994-15643013 Msa0058970:five_prime_UTR 25.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_2:15641687-15641706 None:intergenic 30.0%
AAATGATGACATGAAAAGAG+TGG + chr1_2:15641908-15641927 None:intergenic 30.0%
TTGAAATCATACCACATTAG+TGG + chr1_2:15642209-15642228 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_2:15642247-15642266 None:intergenic 30.0%
TTTGCAAGTTTCGCAATAAT+TGG + chr1_2:15642415-15642434 None:intergenic 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_2:15642460-15642479 Msa0058970:intron 30.0%
AACATTGGTGCATTGTAAAA+AGG - chr1_2:15642697-15642716 Msa0058970:intron 30.0%
AGAATAAAGGTTAAGTCTCA+AGG + chr1_2:15642785-15642804 None:intergenic 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_2:15642889-15642908 None:intergenic 30.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_2:15641687-15641706 None:intergenic 30.0%
AAATGATGACATGAAAAGAG+TGG + chr1_2:15641908-15641927 None:intergenic 30.0%
TTGAAATCATACCACATTAG+TGG + chr1_2:15642209-15642228 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_2:15642247-15642266 None:intergenic 30.0%
TTTGCAAGTTTCGCAATAAT+TGG + chr1_2:15642415-15642434 None:intergenic 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_2:15642460-15642479 Msa0058970:intron 30.0%
AACATTGGTGCATTGTAAAA+AGG - chr1_2:15642697-15642716 Msa0058970:intron 30.0%
AGAATAAAGGTTAAGTCTCA+AGG + chr1_2:15642785-15642804 None:intergenic 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_2:15642889-15642908 None:intergenic 30.0%
!!! CACACAGATTTTGAAGCTTA+TGG + chr1_2:15641726-15641745 None:intergenic 35.0%
GCTCTCATAGTTTGAACAAA+TGG - chr1_2:15641796-15641815 Msa0058970:three_prime_UTR 35.0%
TAAATTACCAAACCCTGGAT+TGG + chr1_2:15641884-15641903 None:intergenic 35.0%
! TTTTATTCATAGTGCGTGTC+TGG - chr1_2:15642251-15642270 Msa0058970:intron 35.0%
! TAACGAGCATCGCAAAATTA+CGG + chr1_2:15642362-15642381 None:intergenic 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_2:15642471-15642490 Msa0058970:intron 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_2:15642509-15642528 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_2:15642510-15642529 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_2:15642511-15642530 Msa0058970:intron 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_2:15642682-15642701 Msa0058970:intron 35.0%
TTGAACTATCGAGTCACTTA+TGG + chr1_2:15642918-15642937 None:intergenic 35.0%
AGAATCCTCAAGTAATCACT+TGG + chr1_2:15643041-15643060 None:intergenic 35.0%
!!! CACACAGATTTTGAAGCTTA+TGG + chr1_2:15641726-15641745 None:intergenic 35.0%
GCTCTCATAGTTTGAACAAA+TGG - chr1_2:15641796-15641815 Msa0058970:three_prime_UTR 35.0%
TAAATTACCAAACCCTGGAT+TGG + chr1_2:15641884-15641903 None:intergenic 35.0%
! TTTTATTCATAGTGCGTGTC+TGG - chr1_2:15642251-15642270 Msa0058970:intron 35.0%
! TAACGAGCATCGCAAAATTA+CGG + chr1_2:15642362-15642381 None:intergenic 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_2:15642471-15642490 Msa0058970:intron 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_2:15642509-15642528 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_2:15642510-15642529 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_2:15642511-15642530 Msa0058970:intron 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_2:15642682-15642701 Msa0058970:intron 35.0%
TTGAACTATCGAGTCACTTA+TGG + chr1_2:15642918-15642937 None:intergenic 35.0%
AGAATCCTCAAGTAATCACT+TGG + chr1_2:15643041-15643060 None:intergenic 35.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_2:15641833-15641852 Msa0058970:three_prime_UTR 40.0%
!! ATTGGAGAAGGTTTGAGTTG+TGG + chr1_2:15641866-15641885 None:intergenic 40.0%
GTGGTTAAATTACCAAACCC+TGG + chr1_2:15641889-15641908 None:intergenic 40.0%
!! CATTGGTTCATCCACTAATG+TGG - chr1_2:15642195-15642214 Msa0058970:CDS 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_2:15642474-15642493 Msa0058970:intron 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_2:15642502-15642521 Msa0058970:intron 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_2:15642516-15642535 Msa0058970:intron 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_2:15642667-15642686 Msa0058970:intron 40.0%
GATGACTCGATTGTATCACT+GGG + chr1_2:15642867-15642886 None:intergenic 40.0%
TGCTACCAAGTGATTACTTG+AGG - chr1_2:15643033-15643052 Msa0058970:five_prime_UTR 40.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_2:15641833-15641852 Msa0058970:three_prime_UTR 40.0%
!! ATTGGAGAAGGTTTGAGTTG+TGG + chr1_2:15641866-15641885 None:intergenic 40.0%
GTGGTTAAATTACCAAACCC+TGG + chr1_2:15641889-15641908 None:intergenic 40.0%
!! CATTGGTTCATCCACTAATG+TGG - chr1_2:15642195-15642214 Msa0058970:CDS 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_2:15642474-15642493 Msa0058970:intron 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_2:15642502-15642521 Msa0058970:intron 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_2:15642516-15642535 Msa0058970:intron 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_2:15642667-15642686 Msa0058970:intron 40.0%
GATGACTCGATTGTATCACT+GGG + chr1_2:15642867-15642886 None:intergenic 40.0%
TGCTACCAAGTGATTACTTG+AGG - chr1_2:15643033-15643052 Msa0058970:five_prime_UTR 40.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_2:15641845-15641864 None:intergenic 45.0%
ACTCAAACCTTCTCCAATCC+AGG - chr1_2:15641868-15641887 Msa0058970:three_prime_UTR 45.0%
CTCAAACCTTCTCCAATCCA+GGG - chr1_2:15641869-15641888 Msa0058970:three_prime_UTR 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_2:15642178-15642197 Msa0058970:CDS 45.0%
! GTTGCTTTCCTGTTTGCTGA+TGG + chr1_2:15642544-15642563 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_2:15642567-15642586 Msa0058970:CDS 45.0%
GTTCACCCTTGCTGATACTT+TGG - chr1_2:15642621-15642640 Msa0058970:intron 45.0%
! ACAGGCCAAAGTATCAGCAA+GGG + chr1_2:15642629-15642648 None:intergenic 45.0%
GGAACTGTTGGACACATCAT+TGG - chr1_2:15642649-15642668 Msa0058970:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_2:15642655-15642674 Msa0058970:intron 45.0%
GATTGTATCACTGGGTCTCT+AGG + chr1_2:15642859-15642878 None:intergenic 45.0%
GGATGACTCGATTGTATCAC+TGG + chr1_2:15642868-15642887 None:intergenic 45.0%
!! ATCGTTCTAGGGAGGGTATT+GGG + chr1_2:15642948-15642967 None:intergenic 45.0%
! TCAACTCGGTGATCGTTCTA+GGG + chr1_2:15642959-15642978 None:intergenic 45.0%
! ATCAACTCGGTGATCGTTCT+AGG + chr1_2:15642960-15642979 None:intergenic 45.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_2:15641845-15641864 None:intergenic 45.0%
ACTCAAACCTTCTCCAATCC+AGG - chr1_2:15641868-15641887 Msa0058970:three_prime_UTR 45.0%
CTCAAACCTTCTCCAATCCA+GGG - chr1_2:15641869-15641888 Msa0058970:three_prime_UTR 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_2:15642178-15642197 Msa0058970:CDS 45.0%
! GTTGCTTTCCTGTTTGCTGA+TGG + chr1_2:15642544-15642563 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_2:15642567-15642586 Msa0058970:CDS 45.0%
GTTCACCCTTGCTGATACTT+TGG - chr1_2:15642621-15642640 Msa0058970:intron 45.0%
! ACAGGCCAAAGTATCAGCAA+GGG + chr1_2:15642629-15642648 None:intergenic 45.0%
GGAACTGTTGGACACATCAT+TGG - chr1_2:15642649-15642668 Msa0058970:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_2:15642655-15642674 Msa0058970:intron 45.0%
GATTGTATCACTGGGTCTCT+AGG + chr1_2:15642859-15642878 None:intergenic 45.0%
GGATGACTCGATTGTATCAC+TGG + chr1_2:15642868-15642887 None:intergenic 45.0%
!! ATCGTTCTAGGGAGGGTATT+GGG + chr1_2:15642948-15642967 None:intergenic 45.0%
! TCAACTCGGTGATCGTTCTA+GGG + chr1_2:15642959-15642978 None:intergenic 45.0%
! ATCAACTCGGTGATCGTTCT+AGG + chr1_2:15642960-15642979 None:intergenic 45.0%
ACCTTCTCCAATCCAGGGTT+TGG - chr1_2:15641874-15641893 Msa0058970:three_prime_UTR 50.0%
! ACCAAACCCTGGATTGGAGA+AGG + chr1_2:15641878-15641897 None:intergenic 50.0%
TTGCTGCCCAACCTATGACA+AGG - chr1_2:15642134-15642153 Msa0058970:CDS 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_2:15642143-15642162 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_2:15642142-15642161 Msa0058970:CDS 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_2:15642148-15642167 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_2:15642147-15642166 Msa0058970:CDS 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_2:15642148-15642167 Msa0058970:CDS 50.0%
! GATTGGCTCCATCAGCAAAC+AGG - chr1_2:15642533-15642552 Msa0058970:CDS 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_2:15642547-15642566 Msa0058970:CDS 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_2:15642558-15642577 Msa0058970:CDS 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_2:15642566-15642585 Msa0058970:CDS 50.0%
! CACAGGCCAAAGTATCAGCA+AGG + chr1_2:15642630-15642649 None:intergenic 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_2:15642628-15642647 Msa0058970:intron 50.0%
ACTTTGGCCTGTGGAACTGT+TGG - chr1_2:15642637-15642656 Msa0058970:intron 50.0%
GATGTGTCCAACAGTTCCAC+AGG + chr1_2:15642647-15642666 None:intergenic 50.0%
!! GATCGTTCTAGGGAGGGTAT+TGG + chr1_2:15642949-15642968 None:intergenic 50.0%
ACCTTCTCCAATCCAGGGTT+TGG - chr1_2:15641874-15641893 Msa0058970:three_prime_UTR 50.0%
! ACCAAACCCTGGATTGGAGA+AGG + chr1_2:15641878-15641897 None:intergenic 50.0%
TTGCTGCCCAACCTATGACA+AGG - chr1_2:15642134-15642153 Msa0058970:CDS 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_2:15642143-15642162 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_2:15642142-15642161 Msa0058970:CDS 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_2:15642148-15642167 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_2:15642147-15642166 Msa0058970:CDS 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_2:15642148-15642167 Msa0058970:CDS 50.0%
! GATTGGCTCCATCAGCAAAC+AGG - chr1_2:15642533-15642552 Msa0058970:CDS 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_2:15642547-15642566 Msa0058970:CDS 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_2:15642558-15642577 Msa0058970:CDS 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_2:15642566-15642585 Msa0058970:CDS 50.0%
! CACAGGCCAAAGTATCAGCA+AGG + chr1_2:15642630-15642649 None:intergenic 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_2:15642628-15642647 Msa0058970:intron 50.0%
ACTTTGGCCTGTGGAACTGT+TGG - chr1_2:15642637-15642656 Msa0058970:intron 50.0%
GATGTGTCCAACAGTTCCAC+AGG + chr1_2:15642647-15642666 None:intergenic 50.0%
!! GATCGTTCTAGGGAGGGTAT+TGG + chr1_2:15642949-15642968 None:intergenic 50.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_2:15642144-15642163 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_2:15642141-15642160 Msa0058970:CDS 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_2:15642157-15642176 Msa0058970:CDS 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_2:15642574-15642593 Msa0058970:CDS 55.0%
!! CTCGGTGATCGTTCTAGGGA+GGG + chr1_2:15642955-15642974 None:intergenic 55.0%
!! ACTCGGTGATCGTTCTAGGG+AGG + chr1_2:15642956-15642975 None:intergenic 55.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_2:15642144-15642163 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_2:15642141-15642160 Msa0058970:CDS 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_2:15642157-15642176 Msa0058970:CDS 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_2:15642574-15642593 Msa0058970:CDS 55.0%
!! CTCGGTGATCGTTCTAGGGA+GGG + chr1_2:15642955-15642974 None:intergenic 55.0%
!! ACTCGGTGATCGTTCTAGGG+AGG + chr1_2:15642956-15642975 None:intergenic 55.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_2:15642156-15642175 Msa0058970:CDS 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_2:15642586-15642605 Msa0058970:intron 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_2:15642598-15642617 Msa0058970:intron 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_2:15642599-15642618 Msa0058970:intron 60.0%
CAGCAAGGGTGAACCCAGCT+GGG + chr1_2:15642615-15642634 None:intergenic 60.0%
TCAGCAAGGGTGAACCCAGC+TGG + chr1_2:15642616-15642635 None:intergenic 60.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_2:15642156-15642175 Msa0058970:CDS 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_2:15642586-15642605 Msa0058970:intron 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_2:15642598-15642617 Msa0058970:intron 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_2:15642599-15642618 Msa0058970:intron 60.0%
CAGCAAGGGTGAACCCAGCT+GGG + chr1_2:15642615-15642634 None:intergenic 60.0%
TCAGCAAGGGTGAACCCAGC+TGG + chr1_2:15642616-15642635 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 15641674 15643061 15641674 ID=Msa0058970;Name=Msa0058970
chr1_2 mRNA 15641674 15643061 15641674 ID=Msa0058970-mRNA-1;Parent=Msa0058970;Name=Msa0058970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=141|1|1|1|1|1|3|347|130
chr1_2 exon 15641674 15642248 15641674 ID=Msa0058970-mRNA-1:exon:6297;Parent=Msa0058970-mRNA-1
chr1_2 exon 15642519 15642602 15642519 ID=Msa0058970-mRNA-1:exon:6296;Parent=Msa0058970-mRNA-1
chr1_2 exon 15642840 15643061 15642840 ID=Msa0058970-mRNA-1:exon:6295;Parent=Msa0058970-mRNA-1
chr1_2 five_prime_UTR 15642921 15643061 15642921 ID=Msa0058970-mRNA-1:five_prime_utr;Parent=Msa0058970-mRNA-1
chr1_2 CDS 15642840 15642920 15642840 ID=Msa0058970-mRNA-1:cds;Parent=Msa0058970-mRNA-1
chr1_2 CDS 15642519 15642602 15642519 ID=Msa0058970-mRNA-1:cds;Parent=Msa0058970-mRNA-1
chr1_2 CDS 15642021 15642248 15642021 ID=Msa0058970-mRNA-1:cds;Parent=Msa0058970-mRNA-1
chr1_2 three_prime_UTR 15641674 15642020 15641674 ID=Msa0058970-mRNA-1:three_prime_utr;Parent=Msa0058970-mRNA-1
Gene Sequence

>Msa0058970

ATGGCAACTTCTATGATGACAACTTTGCCTCAATTCACTGGTCTTAGACCACAACTCAAACCTTCTCCAATCCAGGGTTTGGTTGCTGCCCAACCTATGACAAGGCGCAAGGGAAAGGGTGCTTTGGGAGTTCGTTGTGACTTCATTGGTTCATCCACTAATGTGATTATGGTGGCATCTACAACCCTAATGTTGTTTGCTGGAAGATTTGGATTGGCTCCATCAGCAAACAGGAAAGCAACAGCAGGACTAAAGCTGGAGACAAGGGACTCAGGCTTGCAGACTGGTGACCCAGCTGGGTTCACCCTTGCTGATACTTTGGCCTGTGGAACTGTTGGACACATCATTGGTGTTGGTGTTGTTCTTGGTCTTAAGAACATTGGTGCATTGTAA

Protein sequence

>Msa0058970

MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLKNIGAL*