AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384570 MtrunA17_Chr3g0141051 98.496 532 7 1 1 532 1 531 0.0 1070
Msa0384570 MtrunA17_Chr5g0428201 80.519 539 95 4 1 529 1 539 0.0 884
Msa0384570 MtrunA17_Chr4g0049411 68.056 504 158 2 31 532 27 529 0.0 685
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384570 AT1G58290.1 76.514 545 113 5 1 532 1 543 0.0 828
Msa0384570 AT1G09940.1 73.840 539 121 9 1 529 1 529 0.0 790
Msa0384570 AT2G31250.1 60.000 535 190 10 1 526 1 520 0.0 614

Find 185 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCCAAGTTTATATATTT+TGG 0.157463 3_1:-87771956 Msa0384570:three_prime_UTR
TTAATCGCCGATGAAATTTA+AGG 0.165657 3_1:-87774952 Msa0384570:five_prime_UTR
GACCCTTCCACTCACTCTTT+TGG 0.177685 3_1:+87774740 None:intergenic
ACGTCATCTTTCATGAATAA+TGG 0.203444 3_1:+87772853 None:intergenic
TGGCAGCCACAACCTCTTTA+AGG 0.223188 3_1:+87772704 None:intergenic
AAAGGCTTTGTTTGGAAGTT+TGG 0.234640 3_1:-87771843 Msa0384570:three_prime_UTR
TTCAATCTAGGGTTAGGGTT+AGG 0.235094 3_1:-87774649 Msa0384570:five_prime_UTR
GAGTCTATTATTGTGTTTAA+AGG 0.239579 3_1:-87771861 Msa0384570:three_prime_UTR
ATGCAATAACTGTCGGAAAA+AGG 0.258377 3_1:-87773200 Msa0384570:CDS
CACTTTCTCCGGTCCCAAAT+TGG 0.259254 3_1:-87774598 Msa0384570:CDS
TCTGCTTGTCCAAACTCATT+TGG 0.268213 3_1:-87772105 Msa0384570:three_prime_UTR
TGTTGGATCCATCTCACTTC+TGG 0.271267 3_1:+87772284 None:intergenic
CTGCTTGTCCAAACTCATTT+GGG 0.276725 3_1:-87772104 Msa0384570:three_prime_UTR
TTCTCCTTCAATCTAGGGTT+AGG 0.279827 3_1:-87774655 Msa0384570:five_prime_UTR
GTATTTACTACGAATTATAT+TGG 0.280462 3_1:-87772007 Msa0384570:three_prime_UTR
TCTTCCTTCTCCTTCAATCT+AGG 0.295782 3_1:-87774661 Msa0384570:five_prime_UTR
AGAGACTGAAATATCTGTTT+TGG 0.298449 3_1:-87772338 Msa0384570:CDS
CGTCATCTTTCATGAATAAT+GGG 0.303979 3_1:+87772854 None:intergenic
GAGGAATAGAGACTCCAATT+TGG 0.305860 3_1:+87774584 None:intergenic
TCAATCTAGGGTTAGGGTTA+GGG 0.313893 3_1:-87774648 Msa0384570:five_prime_UTR
ATGGTCCAATGCAACATTTA+AGG 0.316246 3_1:-87772435 Msa0384570:CDS
TGTTCTCAAGGGTCTCAGTT+AGG 0.318272 3_1:+87772389 None:intergenic
AATTGTCGGTAGAGTTATAT+TGG 0.318418 3_1:+87775004 None:intergenic
TATATTGCGATTTGTCTCTC+TGG 0.320355 3_1:+87774783 None:intergenic
CTCTTTGACACCACGGTGTT+GGG 0.321524 3_1:+87773526 None:intergenic
AGAACCACTTTCACTCAAAA+AGG 0.332496 3_1:-87774504 Msa0384570:CDS
TTTCCTTTCATTAGAATAAG+AGG 0.335859 3_1:-87772235 Msa0384570:three_prime_UTR
TGCACTGCTGTGGTTGCTCT+TGG 0.336998 3_1:-87771885 Msa0384570:three_prime_UTR
CCTCCAACATCTTGACTTGC+TGG 0.341053 3_1:+87772817 None:intergenic
GGTCTTGAGTCTCTTGTATT+GGG 0.347849 3_1:-87773315 Msa0384570:CDS
ATATATCTCCATTCGGTTGC+AGG 0.348244 3_1:+87773562 None:intergenic
TGGTCTTGAGTCTCTTGTAT+TGG 0.351928 3_1:-87773316 Msa0384570:CDS
AGGAATAGAGACTCCAATTT+GGG 0.358382 3_1:+87774585 None:intergenic
GCATTATCATGCGAGGCTTC+AGG 0.359923 3_1:+87773099 None:intergenic
AAAGCTGGTCATCAAACATT+TGG 0.383472 3_1:-87773043 Msa0384570:CDS
TCCTCAAATCTTCTTCTTCG+AGG 0.388396 3_1:-87774566 Msa0384570:CDS
GCTCTAGGCCATTCTGCTTC+CGG 0.389081 3_1:+87773638 None:intergenic
AGGAGCAGCATTGTCGTCAT+TGG 0.397753 3_1:-87773710 Msa0384570:CDS
AGTTGAAACAATTTGAAGCT+TGG 0.400753 3_1:-87772627 Msa0384570:CDS
TTGTCTCTCTGGGTTCTCAT+TGG 0.404538 3_1:+87774794 None:intergenic
CAAGAGAGCATTTCTGAAAG+AGG 0.405927 3_1:+87772922 None:intergenic
GAGCCTATGCTGAAAGGATC+AGG 0.406263 3_1:-87772564 Msa0384570:CDS
GGACAAGGAGTTAACGGCTT+TGG 0.406926 3_1:-87773249 Msa0384570:CDS
TGCTCGCAAAGCTCTGAAAC+AGG 0.413070 3_1:+87773393 None:intergenic
GTTCTCAAGGGTCTCAGTTA+GGG 0.416753 3_1:+87772390 None:intergenic
GCCGTTTCAACCACTTTCTC+CGG 0.422111 3_1:-87774609 Msa0384570:CDS
CAGAATTCTGATCAAACTAA+TGG 0.426228 3_1:-87774462 Msa0384570:CDS
TAGTTATTATACTGTTGAGT+AGG 0.426249 3_1:-87774873 Msa0384570:five_prime_UTR
TTGTGTTTAAAGGCTTTGTT+TGG 0.427173 3_1:-87771851 Msa0384570:three_prime_UTR
AACTGATAAATGGGTGGGAA+TGG 0.427322 3_1:+87774539 None:intergenic
TCTCCTTCAATCTAGGGTTA+GGG 0.434658 3_1:-87774654 Msa0384570:five_prime_UTR
CTTCCTTCTCCTTCAATCTA+GGG 0.437261 3_1:-87774660 Msa0384570:five_prime_UTR
TCTAAGCCGATCCTCTTTGT+TGG 0.438084 3_1:+87772684 None:intergenic
ATATTGGCCTAAAATTTGTC+CGG 0.451489 3_1:-87771991 Msa0384570:three_prime_UTR
TAACCCTAACCCTAGATTGA+AGG 0.453355 3_1:+87774651 None:intergenic
GAACAGAAATGTCGATGAAA+AGG 0.454173 3_1:+87772788 None:intergenic
GCAGAGACTAATATTGCTGC+TGG 0.454882 3_1:-87773171 Msa0384570:CDS
ATGGAAGCGCAGGCGATCAT+TGG 0.455997 3_1:-87772655 Msa0384570:CDS
ATTTATCGACAATTAATTGT+CGG 0.456658 3_1:+87774990 None:intergenic
CAAGGGTCTCAGTTAGGGTT+CGG 0.456916 3_1:+87772395 None:intergenic
GGGAATGGAAGAGAGTGCTT+TGG 0.457252 3_1:-87771817 Msa0384570:three_prime_UTR
AGCTGTGGATGATCTTAGTC+GGG 0.458876 3_1:-87772479 Msa0384570:CDS
CGCATAGACACAACAATCAA+TGG 0.462740 3_1:+87772128 None:intergenic
AGAGAGAGATGGAAAGAGTG+TGG 0.464909 3_1:-87774838 Msa0384570:five_prime_UTR
GTTAAGCAAGTTGTCAAAGT+TGG 0.466075 3_1:-87773270 Msa0384570:CDS
AAAGTTGGACAAGGAGTTAA+CGG 0.467613 3_1:-87773255 Msa0384570:CDS
AATGGAAGAGAGTGCTTTGG+AGG 0.469792 3_1:-87771814 None:intergenic
TGCTGAGCTTGAGAAATGCT+TGG 0.471267 3_1:-87772539 Msa0384570:CDS
AATTTAACCTTAAATTTCAT+CGG 0.475180 3_1:+87774945 None:intergenic
ATATTGCGATTTGTCTCTCT+GGG 0.478137 3_1:+87774784 None:intergenic
TGAGAAATGCTTGGGTAAGA+TGG 0.483561 3_1:-87772530 Msa0384570:CDS
TTAGTCGGGGTATTGTGAAT+AGG 0.483898 3_1:-87772465 Msa0384570:CDS
TGAAGCTTGGAGAGACTCGC+TGG 0.485909 3_1:-87772614 Msa0384570:CDS
TATGTGTCTACACATCCATC+TGG 0.486728 3_1:-87772071 Msa0384570:three_prime_UTR
GAGTTCAGCTGCCGTGGAGT+TGG 0.487465 3_1:-87773136 Msa0384570:CDS
ATCAAACATTTGGTTTCGAA+AGG 0.487528 3_1:-87773033 Msa0384570:CDS
AGTTATTATACTGTTGAGTA+GGG 0.488281 3_1:-87774872 Msa0384570:five_prime_UTR
GGAGCAGCATTGTCGTCATT+GGG 0.488441 3_1:-87773709 Msa0384570:CDS
GCCTCGAAGAAGAAGATTTG+AGG 0.488553 3_1:+87774565 None:intergenic
GGCTTTGGAAGAAACATTAG+TGG 0.489386 3_1:-87773234 Msa0384570:CDS
GAATTTGAAAAGAGATGAAG+AGG 0.490223 3_1:+87774687 None:intergenic
TTCTGTGAGTTCAGCTGCCG+TGG 0.490671 3_1:-87773142 Msa0384570:CDS
CAATGTTGATGACCTTAAAG+AGG 0.492073 3_1:-87772716 Msa0384570:CDS
GGCTTTGTTTGGAAGTTTGG+AGG 0.494793 3_1:-87771840 Msa0384570:three_prime_UTR
CTTACCAAAATATATAAACT+TGG 0.495340 3_1:+87771952 None:intergenic
TTTCAGAGCTTTGCGAGCAC+CGG 0.496728 3_1:-87773389 Msa0384570:CDS
AGGATGCTGATTATCGGTGC+TGG 0.497285 3_1:-87773075 Msa0384570:CDS
TGCTGGGAAGATGGGAAAGC+TGG 0.498604 3_1:-87773058 Msa0384570:CDS
TTGAAAAGAGATGAAGAGGA+AGG 0.500295 3_1:+87774691 None:intergenic
TTTCCTCTTATTCTAATGAA+AGG 0.500542 3_1:+87772232 None:intergenic
GATTATCGGTGCTGGGAAGA+TGG 0.501802 3_1:-87773067 Msa0384570:CDS
TCAAAGCATGCATGTTCTCA+AGG 0.503890 3_1:+87772377 None:intergenic
CCTCTTTGACACCACGGTGT+TGG 0.505749 3_1:+87773525 None:intergenic
ATTGTGAATAGGATGCTTCA+TGG 0.507796 3_1:-87772454 Msa0384570:CDS
TCACACCTTAAATGTTGCAT+TGG 0.511482 3_1:+87772430 None:intergenic
ATTTCTGTTCCTCGAAATGT+TGG 0.512769 3_1:-87772775 Msa0384570:CDS
GAGGAGCTCAAGAGCAGAGA+GGG 0.516677 3_1:+87774428 None:intergenic
ATTATCGGTGCTGGGAAGAT+GGG 0.517250 3_1:-87773066 Msa0384570:CDS
GAGTCTCTTGTATTGGGAGA+AGG 0.518033 3_1:-87773309 Msa0384570:CDS
GAAAAGAGATGAAGAGGAAG+GGG 0.521743 3_1:+87774693 None:intergenic
TTCGAAAGGTTGCACAAGGA+TGG 0.522727 3_1:-87773019 Msa0384570:CDS
GCTGAGCTTGAGAAATGCTT+GGG 0.524284 3_1:-87772538 Msa0384570:CDS
ATGCAACATTTAAGGTGTGA+TGG 0.525826 3_1:-87772427 Msa0384570:CDS
CAGAGACTAATATTGCTGCT+GGG 0.527457 3_1:-87773170 Msa0384570:CDS
AATGCCAGGATGCTGATTAT+CGG 0.528010 3_1:-87773081 Msa0384570:CDS
ACACATGAACCAACATTTCG+AGG 0.528910 3_1:+87772766 None:intergenic
AGAAGGTCAAATTCTTGCAC+AGG 0.531198 3_1:-87773292 Msa0384570:CDS
ACCGGAGAAAGTGGTTGAAA+CGG 0.531801 3_1:+87774608 None:intergenic
AAGCTGTGGATGATCTTAGT+CGG 0.534663 3_1:-87772480 Msa0384570:CDS
GGAGCAGAAAGTTCGAGCTA+AGG 0.538367 3_1:-87772317 Msa0384570:CDS
GCTCAGTGTGCACACTGCTC+CGG 0.539155 3_1:-87773687 Msa0384570:CDS
TAGAAAAGCAATGGAAGCGC+AGG 0.539856 3_1:-87772665 Msa0384570:CDS
TCCATCTCTCTCTTCTATCG+TGG 0.540092 3_1:+87774848 None:intergenic
TGCAACATTTAAGGTGTGAT+GGG 0.541340 3_1:-87772426 Msa0384570:CDS
CAATTTGGGACCGGAGAAAG+TGG 0.542238 3_1:+87774599 None:intergenic
CCGTGGTGTCAAAGAGGTCA+TGG 0.542278 3_1:-87773519 Msa0384570:CDS
TTGTGTTTCTGAAGCAGATG+TGG 0.542350 3_1:-87772902 Msa0384570:CDS
GCTTTGTTTGGAAGTTTGGA+GGG 0.542456 3_1:-87771839 Msa0384570:three_prime_UTR
TGAAAAGAGATGAAGAGGAA+GGG 0.543651 3_1:+87774692 None:intergenic
AAGCCTCGCATGATAATGCC+AGG 0.544469 3_1:-87773095 Msa0384570:CDS
TTCAAGCATGCAATAACTGT+CGG 0.546104 3_1:-87773207 Msa0384570:CDS
TGGTATAATACAAAACCAGA+TGG 0.547282 3_1:+87772056 None:intergenic
TTTGTTTGGAAGTTTGGAGG+GGG 0.550793 3_1:-87771837 Msa0384570:three_prime_UTR
TATTGGCCTAAAATTTGTCC+GGG 0.552136 3_1:-87771990 Msa0384570:three_prime_UTR
GGCTTCAGGTAGCTTCATAT+AGG 0.552546 3_1:+87773113 None:intergenic
AACCCAAAAGAGTGAGTGGA+AGG 0.554696 3_1:-87774743 Msa0384570:five_prime_UTR
AAACAGATATTTCAGTCTCT+AGG 0.555709 3_1:+87772341 None:intergenic
CATCTTGACTTGCTGGAGGA+AGG 0.557482 3_1:+87772824 None:intergenic
AACAGCAGAAGTCTCCTTGG+TGG 0.557580 3_1:-87772156 Msa0384570:three_prime_UTR
ATCGTCAATGAAGTTGGTGT+TGG 0.561448 3_1:+87772267 None:intergenic
TAGAGACTCCAATTTGGGAC+CGG 0.563889 3_1:+87774590 None:intergenic
TGAAACAGCAGAAGTCTCCT+TGG 0.565843 3_1:-87772159 Msa0384570:three_prime_UTR
AGCACCGATAATCAGCATCC+TGG 0.566229 3_1:+87773077 None:intergenic
GAACAAAACCAGAAGTGAGA+TGG 0.570201 3_1:-87772292 Msa0384570:exon
GGATGCTGATTATCGGTGCT+GGG 0.570581 3_1:-87773074 Msa0384570:CDS
AATTGAGAGCCTATGCTGAA+AGG 0.571766 3_1:-87772570 Msa0384570:CDS
CAAAGCATGCATGTTCTCAA+GGG 0.572276 3_1:+87772378 None:intergenic
TGATGACCTTAAAGAGGTTG+TGG 0.573814 3_1:-87772710 Msa0384570:CDS
AGGCCATTCTGCTTCCGGAA+TGG 0.575247 3_1:+87773643 None:intergenic
AAAGAAGACGCGGAAAGCTG+TGG 0.575501 3_1:-87772494 Msa0384570:CDS
CGACGACATATATCTCCATT+CGG 0.575634 3_1:+87773555 None:intergenic
CTCAAGAGCAGAGAGGGTGG+TGG 0.576095 3_1:+87774434 None:intergenic
TTGCCATTCCGGAAGCAGAA+TGG 0.576827 3_1:-87773646 Msa0384570:CDS
GCAGAAAGTTCGAGCTAAGG+TGG 0.577492 3_1:-87772314 Msa0384570:CDS
CCAGCAAGTCAAGATGTTGG+AGG 0.577979 3_1:-87772817 Msa0384570:CDS
GGATAAAACGCGCGGAACAC+AGG 0.578310 3_1:-87774817 Msa0384570:five_prime_UTR
CTTTGTTTGGAAGTTTGGAG+GGG 0.582964 3_1:-87771838 Msa0384570:three_prime_UTR
CACAACTCTGCAATAGCTCT+AGG 0.584214 3_1:+87773623 None:intergenic
GGATCGGCTTAGAAAAGCAA+TGG 0.585302 3_1:-87772674 Msa0384570:CDS
GAGAAATGCTTGGGTAAGAT+GGG 0.585895 3_1:-87772529 Msa0384570:CDS
TGCAATACGCGAAGAACTGA+AGG 0.590760 3_1:-87772965 Msa0384570:CDS
TCTGAGCACCTGCAACCGAA+TGG 0.593474 3_1:-87773570 Msa0384570:CDS
AACCCTGATCCTTTCAGCAT+AGG 0.597458 3_1:+87772561 None:intergenic
AGAGACTAATATTGCTGCTG+GGG 0.599145 3_1:-87773169 Msa0384570:CDS
TATTGCAGCAACTCTCTCCT+CGG 0.599628 3_1:+87772981 None:intergenic
CAAGTTGTCAAAGTTGGACA+AGG 0.600402 3_1:-87773264 Msa0384570:CDS
GAGCTCAAGAGCAGAGAGGG+TGG 0.603642 3_1:+87774431 None:intergenic
CCTCCAGCAAGTCAAGATGT+TGG 0.604438 3_1:-87772820 Msa0384570:CDS
TGGCACTAATTACAATTACC+CGG 0.608481 3_1:+87771972 None:intergenic
TGGTTTCGAAAGGTTGCACA+AGG 0.613006 3_1:-87773023 Msa0384570:CDS
ATGTGTATCGTCAATGAAGT+TGG 0.615558 3_1:+87772261 None:intergenic
AAATGTCGATGAAAAGGCGA+AGG 0.620011 3_1:+87772794 None:intergenic
TAACCCTAGATTGAAGGAGA+AGG 0.620430 3_1:+87774657 None:intergenic
TGGCTGCCAACAAAGAGGAT+CGG 0.623928 3_1:-87772690 Msa0384570:CDS
TCCACGATAGAAGAGAGAGA+TGG 0.624665 3_1:-87774849 Msa0384570:five_prime_UTR
CCAACACCGTGGTGTCAAAG+AGG 0.625380 3_1:-87773525 Msa0384570:CDS
AGCCTATGCTGAAAGGATCA+GGG 0.627363 3_1:-87772563 Msa0384570:CDS
GCAAAGCTCTGAAACAGGAA+CGG 0.637910 3_1:+87773398 None:intergenic
TAACAGGGTACACAAAGGAA+AGG 0.638046 3_1:-87773730 Msa0384570:intron
GTGTCAAAGAGGTCATGGAA+TGG 0.647540 3_1:-87773514 Msa0384570:CDS
CATCCTGGCATTATCATGCG+AGG 0.650328 3_1:+87773092 None:intergenic
CCATGACCTCTTTGACACCA+CGG 0.651376 3_1:+87773519 None:intergenic
GGTTGTGGCTGCCAACAAAG+AGG 0.659117 3_1:-87772695 Msa0384570:CDS
ACCCAAAAGAGTGAGTGGAA+GGG 0.663955 3_1:-87774742 Msa0384570:five_prime_UTR
CCAACATCTTGACTTGCTGG+AGG 0.669581 3_1:+87772820 None:intergenic
AACTTTAACAGGGTACACAA+AGG 0.670584 3_1:-87773735 Msa0384570:intron
TTAGGGTTCTCACTCAACAA+TGG 0.677893 3_1:-87774631 Msa0384570:exon
TGAGGAGCTCAAGAGCAGAG+AGG 0.684333 3_1:+87774427 None:intergenic
CTTCATATAGGCCAACTCCA+CGG 0.687445 3_1:+87773125 None:intergenic
AATCAATGGAAGCTCCACCA+AGG 0.691918 3_1:+87772142 None:intergenic
ATGATATCTCAAAGAAGACG+CGG 0.701193 3_1:-87772504 Msa0384570:CDS
GCTGTGGATGATCTTAGTCG+GGG 0.710260 3_1:-87772478 Msa0384570:CDS
AAGAGTGTGGATAAAACGCG+CGG 0.728313 3_1:-87774825 Msa0384570:five_prime_UTR
GGTTGTTGTCAATAGAACCG+AGG 0.729846 3_1:-87772998 Msa0384570:CDS
GTCGCTCTATCCCAACACCG+TGG 0.769259 3_1:-87773536 Msa0384570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAACCTTAAATTTCAT+CGG + chr3_1:87771904-87771923 None:intergenic 15.0%
!! TAAAATGTTTAATCAAACAA+AGG + chr3_1:87772519-87772538 None:intergenic 15.0%
!! TTTATACAATTAACTTTAAC+AGG - chr3_1:87773100-87773119 Msa0384570:CDS 15.0%
!! TTATACAATTAACTTTAACA+GGG - chr3_1:87773101-87773120 Msa0384570:CDS 15.0%
!!! GAGTTATATTGGTAATTTTT+TGG + chr3_1:87771834-87771853 None:intergenic 20.0%
!! ATTTATCGACAATTAATTGT+CGG + chr3_1:87771859-87771878 None:intergenic 20.0%
!!! TCTGAAAGTATATAATCTTT+TGG - chr3_1:87772652-87772671 Msa0384570:CDS 20.0%
!! TTTCATAGTATTCACTATAA+AGG - chr3_1:87772768-87772787 Msa0384570:CDS 20.0%
!! AGAAATATAACAAACAGAAA+AGG + chr3_1:87772873-87772892 None:intergenic 20.0%
!!! TGTTTGTTATATTTCTTAAG+TGG - chr3_1:87772877-87772896 Msa0384570:CDS 20.0%
!!! CATAAAAATGTCTTCATTTT+TGG + chr3_1:87774813-87774832 None:intergenic 20.0%
!! GTATTTACTACGAATTATAT+TGG - chr3_1:87774839-87774858 Msa0384570:five_prime_UTR 20.0%
!! CTTACCAAAATATATAAACT+TGG + chr3_1:87774897-87774916 None:intergenic 20.0%
!!! CAAGTTTATATATTTTGGTA+AGG - chr3_1:87774895-87774914 Msa0384570:five_prime_UTR 20.0%
! TAGTTATTATACTGTTGAGT+AGG - chr3_1:87771973-87771992 Msa0384570:three_prime_UTR 25.0%
! AGTTATTATACTGTTGAGTA+GGG - chr3_1:87771974-87771993 Msa0384570:three_prime_UTR 25.0%
! TTTCCCAAAAACTGATAAAT+GGG + chr3_1:87772319-87772338 None:intergenic 25.0%
! TGTTGTTATCTCTAAACATA+TGG - chr3_1:87772558-87772577 Msa0384570:CDS 25.0%
! TCTCTAAACATATGGATTTA+AGG - chr3_1:87772566-87772585 Msa0384570:CDS 25.0%
! CTTGAATACAATTAATCATC+TGG + chr3_1:87772695-87772714 None:intergenic 25.0%
! GAAAAAAAATACATGTTTCC+TGG + chr3_1:87772752-87772771 None:intergenic 25.0%
!! GAGTTTGTTTAATTCACTTA+AGG - chr3_1:87772843-87772862 Msa0384570:CDS 25.0%
! GTTATATTTCTTAAGTGGTT+CGG - chr3_1:87772882-87772901 Msa0384570:CDS 25.0%
! TTTACCAAAAGAAAGAAAGA+CGG - chr3_1:87773014-87773033 Msa0384570:CDS 25.0%
! TTTAATGTATCTGTTCTCTT+TGG - chr3_1:87773415-87773434 Msa0384570:intron 25.0%
!! CTTTGTTGTAAAGTAAAAAC+CGG + chr3_1:87773479-87773498 None:intergenic 25.0%
!!! GCTCTCAATTTTTTTATAGT+AGG + chr3_1:87774266-87774285 None:intergenic 25.0%
! TTTCCTTTCATTAGAATAAG+AGG - chr3_1:87774611-87774630 Msa0384570:CDS 25.0%
! TTTCCTCTTATTCTAATGAA+AGG + chr3_1:87774617-87774636 None:intergenic 25.0%
! ACGATTTCATATCCTAAAAA+TGG + chr3_1:87774648-87774667 None:intergenic 25.0%
!! AGTGCCAAGTTTATATATTT+TGG - chr3_1:87774890-87774909 Msa0384570:five_prime_UTR 25.0%
! GAGTCTATTATTGTGTTTAA+AGG - chr3_1:87774985-87775004 Msa0384570:five_prime_UTR 25.0%
AATTGTCGGTAGAGTTATAT+TGG + chr3_1:87771845-87771864 None:intergenic 30.0%
TTAATCGCCGATGAAATTTA+AGG - chr3_1:87771894-87771913 Msa0384570:three_prime_UTR 30.0%
!! GAAAATTGCTTTTCACACTT+TGG + chr3_1:87771953-87771972 None:intergenic 30.0%
GAATTTGAAAAGAGATGAAG+AGG + chr3_1:87772162-87772181 None:intergenic 30.0%
GTTTCCCAAAAACTGATAAA+TGG + chr3_1:87772320-87772339 None:intergenic 30.0%
!!! AATTCCTTTTTGAGTGAAAG+TGG + chr3_1:87772349-87772368 None:intergenic 30.0%
CAGAATTCTGATCAAACTAA+TGG - chr3_1:87772384-87772403 Msa0384570:CDS 30.0%
TCAAAGACGAATTCAATTCA+GGG + chr3_1:87772482-87772501 None:intergenic 30.0%
ATCAAAGACGAATTCAATTC+AGG + chr3_1:87772483-87772502 None:intergenic 30.0%
ACAACAAATTAAGACAGAGA+GGG + chr3_1:87772544-87772563 None:intergenic 30.0%
AACAACAAATTAAGACAGAG+AGG + chr3_1:87772545-87772564 None:intergenic 30.0%
TACATGTTTCCTGGTAAATA+GGG + chr3_1:87772743-87772762 None:intergenic 30.0%
ATACATGTTTCCTGGTAAAT+AGG + chr3_1:87772744-87772763 None:intergenic 30.0%
!! TTCCAAAGATTTGAAGCTTT+TGG - chr3_1:87772945-87772964 Msa0384570:CDS 30.0%
!! TCCAAAGATTTGAAGCTTTT+GGG - chr3_1:87772946-87772965 Msa0384570:CDS 30.0%
TTACCAAAAGAAAGAAAGAC+GGG - chr3_1:87773015-87773034 Msa0384570:CDS 30.0%
ATGCACGACAAATATGATTT+AGG + chr3_1:87773386-87773405 None:intergenic 30.0%
TACTTGAAAAAGATGTTGTG+TGG + chr3_1:87773505-87773524 None:intergenic 30.0%
! ATCAAACATTTGGTTTCGAA+AGG - chr3_1:87773813-87773832 Msa0384570:intron 30.0%
CGTCATCTTTCATGAATAAT+GGG + chr3_1:87773995-87774014 None:intergenic 30.0%
ACGTCATCTTTCATGAATAA+TGG + chr3_1:87773996-87774015 None:intergenic 30.0%
! AGTTGAAACAATTTGAAGCT+TGG - chr3_1:87774219-87774238 Msa0384570:intron 30.0%
AAACAGATATTTCAGTCTCT+AGG + chr3_1:87774508-87774527 None:intergenic 30.0%
! AGAGACTGAAATATCTGTTT+TGG - chr3_1:87774508-87774527 Msa0384570:CDS 30.0%
TCATATCCTAAAAATGGTGA+GGG + chr3_1:87774642-87774661 None:intergenic 30.0%
TTCATATCCTAAAAATGGTG+AGG + chr3_1:87774643-87774662 None:intergenic 30.0%
TGGTATAATACAAAACCAGA+TGG + chr3_1:87774793-87774812 None:intergenic 30.0%
! ATATTGGCCTAAAATTTGTC+CGG - chr3_1:87774855-87774874 Msa0384570:five_prime_UTR 30.0%
!! TTGTGTTTAAAGGCTTTGTT+TGG - chr3_1:87774995-87775014 Msa0384570:five_prime_UTR 30.0%
ATATTGCGATTTGTCTCTCT+GGG + chr3_1:87772065-87772084 None:intergenic 35.0%
TATATTGCGATTTGTCTCTC+TGG + chr3_1:87772066-87772085 None:intergenic 35.0%
TGAAAAGAGATGAAGAGGAA+GGG + chr3_1:87772157-87772176 None:intergenic 35.0%
TTGAAAAGAGATGAAGAGGA+AGG + chr3_1:87772158-87772177 None:intergenic 35.0%
AGGAATAGAGACTCCAATTT+GGG + chr3_1:87772264-87772283 None:intergenic 35.0%
CCAAAAACTGATAAATGGGT+GGG + chr3_1:87772315-87772334 None:intergenic 35.0%
! CCACCCATTTATCAGTTTTT+GGG - chr3_1:87772313-87772332 Msa0384570:CDS 35.0%
!! TTTTGAGTGAAAGTGGTTCT+GGG + chr3_1:87772342-87772361 None:intergenic 35.0%
!!! TTTTTGAGTGAAAGTGGTTC+TGG + chr3_1:87772343-87772362 None:intergenic 35.0%
AGAACCACTTTCACTCAAAA+AGG - chr3_1:87772342-87772361 Msa0384570:CDS 35.0%
TCCCAAAAGCTTCAAATCTT+TGG + chr3_1:87772950-87772969 None:intergenic 35.0%
! CTTTTGGTAAATAACCCTCT+AGG + chr3_1:87773005-87773024 None:intergenic 35.0%
! AATCCCGTCTTTCTTTCTTT+TGG + chr3_1:87773021-87773040 None:intergenic 35.0%
AACTTTAACAGGGTACACAA+AGG - chr3_1:87773111-87773130 Msa0384570:CDS 35.0%
! AGTTTTTCACGCATTTCTAC+CGG + chr3_1:87773181-87773200 None:intergenic 35.0%
!!! CATCTTTTTCAAGTATCAGC+TGG - chr3_1:87773510-87773529 Msa0384570:CDS 35.0%
GTTAAGCAAGTTGTCAAAGT+TGG - chr3_1:87773576-87773595 Msa0384570:CDS 35.0%
AAAGTTGGACAAGGAGTTAA+CGG - chr3_1:87773591-87773610 Msa0384570:CDS 35.0%
TTCAAGCATGCAATAACTGT+CGG - chr3_1:87773639-87773658 Msa0384570:CDS 35.0%
ATGCAATAACTGTCGGAAAA+AGG - chr3_1:87773646-87773665 Msa0384570:CDS 35.0%
TGCAATAACTGTCGGAAAAA+GGG - chr3_1:87773647-87773666 Msa0384570:CDS 35.0%
AAAGCTGGTCATCAAACATT+TGG - chr3_1:87773803-87773822 Msa0384570:intron 35.0%
GAACAGAAATGTCGATGAAA+AGG + chr3_1:87774061-87774080 None:intergenic 35.0%
ATTTCTGTTCCTCGAAATGT+TGG - chr3_1:87774071-87774090 Msa0384570:intron 35.0%
!! CAATGTTGATGACCTTAAAG+AGG - chr3_1:87774130-87774149 Msa0384570:intron 35.0%
ATGATATCTCAAAGAAGACG+CGG - chr3_1:87774342-87774361 Msa0384570:intron 35.0%
ATTGTGAATAGGATGCTTCA+TGG - chr3_1:87774392-87774411 Msa0384570:intron 35.0%
ATGGTCCAATGCAACATTTA+AGG - chr3_1:87774411-87774430 Msa0384570:CDS 35.0%
TCACACCTTAAATGTTGCAT+TGG + chr3_1:87774419-87774438 None:intergenic 35.0%
! ATGCAACATTTAAGGTGTGA+TGG - chr3_1:87774419-87774438 Msa0384570:CDS 35.0%
! TGCAACATTTAAGGTGTGAT+GGG - chr3_1:87774420-87774439 Msa0384570:CDS 35.0%
ATGTGTATCGTCAATGAAGT+TGG + chr3_1:87774588-87774607 None:intergenic 35.0%
! TATTGGCCTAAAATTTGTCC+GGG - chr3_1:87774856-87774875 Msa0384570:five_prime_UTR 35.0%
! CAATTACCCGGACAAATTTT+AGG + chr3_1:87774865-87774884 None:intergenic 35.0%
TGGCACTAATTACAATTACC+CGG + chr3_1:87774877-87774896 None:intergenic 35.0%
!! AAAGGCTTTGTTTGGAAGTT+TGG - chr3_1:87775003-87775022 Msa0384570:five_prime_UTR 35.0%
CAAAAACCCAAAAGAGTGAG+TGG - chr3_1:87772099-87772118 Msa0384570:three_prime_UTR 40.0%
GAAAAGAGATGAAGAGGAAG+GGG + chr3_1:87772156-87772175 None:intergenic 40.0%
TCTTCCTTCTCCTTCAATCT+AGG - chr3_1:87772185-87772204 Msa0384570:three_prime_UTR 40.0%
CTTCCTTCTCCTTCAATCTA+GGG - chr3_1:87772186-87772205 Msa0384570:three_prime_UTR 40.0%
TAACCCTAGATTGAAGGAGA+AGG + chr3_1:87772192-87772211 None:intergenic 40.0%
! TTCTCCTTCAATCTAGGGTT+AGG - chr3_1:87772191-87772210 Msa0384570:three_prime_UTR 40.0%
! TCTCCTTCAATCTAGGGTTA+GGG - chr3_1:87772192-87772211 Msa0384570:three_prime_UTR 40.0%
TAACCCTAACCCTAGATTGA+AGG + chr3_1:87772198-87772217 None:intergenic 40.0%
! TTCAATCTAGGGTTAGGGTT+AGG - chr3_1:87772197-87772216 Msa0384570:three_prime_UTR 40.0%
! TCAATCTAGGGTTAGGGTTA+GGG - chr3_1:87772198-87772217 Msa0384570:three_prime_UTR 40.0%
TTAGGGTTCTCACTCAACAA+TGG - chr3_1:87772215-87772234 Msa0384570:three_prime_UTR 40.0%
GAGGAATAGAGACTCCAATT+TGG + chr3_1:87772265-87772284 None:intergenic 40.0%
TCCTCAAATCTTCTTCTTCG+AGG - chr3_1:87772280-87772299 Msa0384570:exon 40.0%
AACTGATAAATGGGTGGGAA+TGG + chr3_1:87772310-87772329 None:intergenic 40.0%
! CCCACCCATTTATCAGTTTT+TGG - chr3_1:87772312-87772331 Msa0384570:CDS 40.0%
CCCAAAAACTGATAAATGGG+TGG + chr3_1:87772316-87772335 None:intergenic 40.0%
! TATCAGCTGCAGAAGTTTTG+AGG + chr3_1:87772440-87772459 None:intergenic 40.0%
! CGGGATTGCATGTTTTTCAT+TGG - chr3_1:87773034-87773053 Msa0384570:CDS 40.0%
TAACAGGGTACACAAAGGAA+AGG - chr3_1:87773116-87773135 Msa0384570:CDS 40.0%
ATATATCTCCATTCGGTTGC+AGG + chr3_1:87773287-87773306 None:intergenic 40.0%
CGACGACATATATCTCCATT+CGG + chr3_1:87773294-87773313 None:intergenic 40.0%
! TGGTCTTGAGTCTCTTGTAT+TGG - chr3_1:87773530-87773549 Msa0384570:CDS 40.0%
GGTCTTGAGTCTCTTGTATT+GGG - chr3_1:87773531-87773550 Msa0384570:CDS 40.0%
AGAAGGTCAAATTCTTGCAC+AGG - chr3_1:87773554-87773573 Msa0384570:CDS 40.0%
CAAGTTGTCAAAGTTGGACA+AGG - chr3_1:87773582-87773601 Msa0384570:CDS 40.0%
!! GGCTTTGGAAGAAACATTAG+TGG - chr3_1:87773612-87773631 Msa0384570:CDS 40.0%
CAGAGACTAATATTGCTGCT+GGG - chr3_1:87773676-87773695 Msa0384570:CDS 40.0%
AGAGACTAATATTGCTGCTG+GGG - chr3_1:87773677-87773696 Msa0384570:CDS 40.0%
! AATGCCAGGATGCTGATTAT+CGG - chr3_1:87773765-87773784 Msa0384570:intron 40.0%
!! CAAGAGAGCATTTCTGAAAG+AGG + chr3_1:87773927-87773946 None:intergenic 40.0%
!! TTGTGTTTCTGAAGCAGATG+TGG - chr3_1:87773944-87773963 Msa0384570:intron 40.0%
AAATGTCGATGAAAAGGCGA+AGG + chr3_1:87774055-87774074 None:intergenic 40.0%
ACACATGAACCAACATTTCG+AGG + chr3_1:87774083-87774102 None:intergenic 40.0%
TGATGACCTTAAAGAGGTTG+TGG - chr3_1:87774136-87774155 Msa0384570:intron 40.0%
AATTGAGAGCCTATGCTGAA+AGG - chr3_1:87774276-87774295 Msa0384570:intron 40.0%
TGAGAAATGCTTGGGTAAGA+TGG - chr3_1:87774316-87774335 Msa0384570:intron 40.0%
GAGAAATGCTTGGGTAAGAT+GGG - chr3_1:87774317-87774336 Msa0384570:intron 40.0%
AAGCTGTGGATGATCTTAGT+CGG - chr3_1:87774366-87774385 Msa0384570:intron 40.0%
!! TTAGTCGGGGTATTGTGAAT+AGG - chr3_1:87774381-87774400 Msa0384570:intron 40.0%
CAAAGCATGCATGTTCTCAA+GGG + chr3_1:87774471-87774490 None:intergenic 40.0%
TCAAAGCATGCATGTTCTCA+AGG + chr3_1:87774472-87774491 None:intergenic 40.0%
GAACAAAACCAGAAGTGAGA+TGG - chr3_1:87774554-87774573 Msa0384570:CDS 40.0%
!! ATCGTCAATGAAGTTGGTGT+TGG + chr3_1:87774582-87774601 None:intergenic 40.0%
!! GAAACACCCTCACCATTTTT+AGG - chr3_1:87774633-87774652 Msa0384570:exon 40.0%
CGCATAGACACAACAATCAA+TGG + chr3_1:87774721-87774740 None:intergenic 40.0%
TCTGCTTGTCCAAACTCATT+TGG - chr3_1:87774741-87774760 Msa0384570:five_prime_UTR 40.0%
CTGCTTGTCCAAACTCATTT+GGG - chr3_1:87774742-87774761 Msa0384570:five_prime_UTR 40.0%
CCAAAAAGCCCAAATGAGTT+TGG + chr3_1:87774753-87774772 None:intergenic 40.0%
! CCAAACTCATTTGGGCTTTT+TGG - chr3_1:87774750-87774769 Msa0384570:five_prime_UTR 40.0%
TATGTGTCTACACATCCATC+TGG - chr3_1:87774775-87774794 Msa0384570:five_prime_UTR 40.0%
!!! TCTGTTTTTATGCACTGCTG+TGG - chr3_1:87774951-87774970 Msa0384570:five_prime_UTR 40.0%
!! GCTTTGTTTGGAAGTTTGGA+GGG - chr3_1:87775007-87775026 Msa0384570:five_prime_UTR 40.0%
! CTTTGTTTGGAAGTTTGGAG+GGG - chr3_1:87775008-87775027 Msa0384570:five_prime_UTR 40.0%
TTTGTTTGGAAGTTTGGAGG+GGG - chr3_1:87775009-87775028 Msa0384570:five_prime_UTR 40.0%
TCCACGATAGAAGAGAGAGA+TGG - chr3_1:87771997-87772016 Msa0384570:three_prime_UTR 45.0%
TCCATCTCTCTCTTCTATCG+TGG + chr3_1:87772001-87772020 None:intergenic 45.0%
AGAGAGAGATGGAAAGAGTG+TGG - chr3_1:87772008-87772027 Msa0384570:three_prime_UTR 45.0%
! AAGAGTGTGGATAAAACGCG+CGG - chr3_1:87772021-87772040 Msa0384570:three_prime_UTR 45.0%
TTGTCTCTCTGGGTTCTCAT+TGG + chr3_1:87772055-87772074 None:intergenic 45.0%
AACCCAAAAGAGTGAGTGGA+AGG - chr3_1:87772103-87772122 Msa0384570:three_prime_UTR 45.0%
ACCCAAAAGAGTGAGTGGAA+GGG - chr3_1:87772104-87772123 Msa0384570:three_prime_UTR 45.0%
! ACCCTTCCACTCACTCTTTT+GGG + chr3_1:87772108-87772127 None:intergenic 45.0%
ACCGGAGAAAGTGGTTGAAA+CGG + chr3_1:87772241-87772260 None:intergenic 45.0%
! TAGAGACTCCAATTTGGGAC+CGG + chr3_1:87772259-87772278 None:intergenic 45.0%
GCCTCGAAGAAGAAGATTTG+AGG + chr3_1:87772284-87772303 None:intergenic 45.0%
CAGAGATAAAGTGCAGTAGC+AGG + chr3_1:87772636-87772655 None:intergenic 45.0%
ATTGCAGCACCCTATTTACC+AGG - chr3_1:87772731-87772750 Msa0384570:CDS 45.0%
!!! TTTGAAGCTTTTGGGACCTG+TGG - chr3_1:87772954-87772973 Msa0384570:CDS 45.0%
! TGGTGATATCTAGAGCCTAG+AGG - chr3_1:87772987-87773006 Msa0384570:CDS 45.0%
! GGTGATATCTAGAGCCTAGA+GGG - chr3_1:87772988-87773007 Msa0384570:CDS 45.0%
GCGTGAAAAACTTGCCATTC+CGG - chr3_1:87773189-87773208 Msa0384570:CDS 45.0%
CACAACTCTGCAATAGCTCT+AGG + chr3_1:87773226-87773245 None:intergenic 45.0%
GTGTCAAAGAGGTCATGGAA+TGG - chr3_1:87773332-87773351 Msa0384570:CDS 45.0%
!! GCAAAGCTCTGAAACAGGAA+CGG + chr3_1:87773451-87773470 None:intergenic 45.0%
GAGTCTCTTGTATTGGGAGA+AGG - chr3_1:87773537-87773556 Msa0384570:CDS 45.0%
GCAGAGACTAATATTGCTGC+TGG - chr3_1:87773675-87773694 Msa0384570:CDS 45.0%
CTTCATATAGGCCAACTCCA+CGG + chr3_1:87773724-87773743 None:intergenic 45.0%
GGCTTCAGGTAGCTTCATAT+AGG + chr3_1:87773736-87773755 None:intergenic 45.0%
!! ATTATCGGTGCTGGGAAGAT+GGG - chr3_1:87773780-87773799 Msa0384570:intron 45.0%
TGGTTTCGAAAGGTTGCACA+AGG - chr3_1:87773823-87773842 Msa0384570:intron 45.0%
TTCGAAAGGTTGCACAAGGA+TGG - chr3_1:87773827-87773846 Msa0384570:intron 45.0%
GGTTGTTGTCAATAGAACCG+AGG - chr3_1:87773848-87773867 Msa0384570:intron 45.0%
TATTGCAGCAACTCTCTCCT+CGG + chr3_1:87773868-87773887 None:intergenic 45.0%
TGCAATACGCGAAGAACTGA+AGG - chr3_1:87773881-87773900 Msa0384570:intron 45.0%
! TGGGTTTTCTGATGCTGTAC+TGG + chr3_1:87773976-87773995 None:intergenic 45.0%
TCTAAGCCGATCCTCTTTGT+TGG + chr3_1:87774165-87774184 None:intergenic 45.0%
! GGATCGGCTTAGAAAAGCAA+TGG - chr3_1:87774172-87774191 Msa0384570:intron 45.0%
! TAGAAAAGCAATGGAAGCGC+AGG - chr3_1:87774181-87774200 Msa0384570:intron 45.0%
AGCCTATGCTGAAAGGATCA+GGG - chr3_1:87774283-87774302 Msa0384570:intron 45.0%
AACCCTGATCCTTTCAGCAT+AGG + chr3_1:87774288-87774307 None:intergenic 45.0%
TGCTGAGCTTGAGAAATGCT+TGG - chr3_1:87774307-87774326 Msa0384570:intron 45.0%
GCTGAGCTTGAGAAATGCTT+GGG - chr3_1:87774308-87774327 Msa0384570:intron 45.0%
AGCTGTGGATGATCTTAGTC+GGG - chr3_1:87774367-87774386 Msa0384570:intron 45.0%
GTTCTCAAGGGTCTCAGTTA+GGG + chr3_1:87774459-87774478 None:intergenic 45.0%
TGTTCTCAAGGGTCTCAGTT+AGG + chr3_1:87774460-87774479 None:intergenic 45.0%
TGTTGGATCCATCTCACTTC+TGG + chr3_1:87774565-87774584 None:intergenic 45.0%
TGAAACAGCAGAAGTCTCCT+TGG - chr3_1:87774687-87774706 Msa0384570:five_prime_UTR 45.0%
AATCAATGGAAGCTCCACCA+AGG + chr3_1:87774707-87774726 None:intergenic 45.0%
!! GGCTTTGTTTGGAAGTTTGG+AGG - chr3_1:87775006-87775025 Msa0384570:five_prime_UTR 45.0%
! GACCCTTCCACTCACTCTTT+TGG + chr3_1:87772109-87772128 None:intergenic 50.0%
GCCGTTTCAACCACTTTCTC+CGG - chr3_1:87772237-87772256 Msa0384570:three_prime_UTR 50.0%
! CAATTTGGGACCGGAGAAAG+TGG + chr3_1:87772250-87772269 None:intergenic 50.0%
CACTTTCTCCGGTCCCAAAT+TGG - chr3_1:87772248-87772267 Msa0384570:three_prime_UTR 50.0%
!!! CTTTTGGGACCTGTGGTTGA+CGG - chr3_1:87772961-87772980 Msa0384570:CDS 50.0%
AGGAGCAGCATTGTCGTCAT+TGG - chr3_1:87773136-87773155 Msa0384570:CDS 50.0%
GGAGCAGCATTGTCGTCATT+GGG - chr3_1:87773137-87773156 Msa0384570:CDS 50.0%
TTGCCATTCCGGAAGCAGAA+TGG - chr3_1:87773200-87773219 Msa0384570:CDS 50.0%
CTCTTTGACACCACGGTGTT+GGG + chr3_1:87773323-87773342 None:intergenic 50.0%
CCATGACCTCTTTGACACCA+CGG + chr3_1:87773330-87773349 None:intergenic 50.0%
!! TGCTCGCAAAGCTCTGAAAC+AGG + chr3_1:87773456-87773475 None:intergenic 50.0%
TTTCAGAGCTTTGCGAGCAC+CGG - chr3_1:87773457-87773476 Msa0384570:intron 50.0%
GGACAAGGAGTTAACGGCTT+TGG - chr3_1:87773597-87773616 Msa0384570:CDS 50.0%
GCATTATCATGCGAGGCTTC+AGG + chr3_1:87773750-87773769 None:intergenic 50.0%
! AAGCCTCGCATGATAATGCC+AGG - chr3_1:87773751-87773770 Msa0384570:intron 50.0%
CATCCTGGCATTATCATGCG+AGG + chr3_1:87773757-87773776 None:intergenic 50.0%
!! AGCACCGATAATCAGCATCC+TGG + chr3_1:87773772-87773791 None:intergenic 50.0%
! AGGATGCTGATTATCGGTGC+TGG - chr3_1:87773771-87773790 Msa0384570:intron 50.0%
! GGATGCTGATTATCGGTGCT+GGG - chr3_1:87773772-87773791 Msa0384570:intron 50.0%
!! GATTATCGGTGCTGGGAAGA+TGG - chr3_1:87773779-87773798 Msa0384570:intron 50.0%
!! CATCTTGACTTGCTGGAGGA+AGG + chr3_1:87774025-87774044 None:intergenic 50.0%
!! CCAACATCTTGACTTGCTGG+AGG + chr3_1:87774029-87774048 None:intergenic 50.0%
CCTCCAGCAAGTCAAGATGT+TGG - chr3_1:87774026-87774045 Msa0384570:intron 50.0%
!! CCTCCAACATCTTGACTTGC+TGG + chr3_1:87774032-87774051 None:intergenic 50.0%
CCAGCAAGTCAAGATGTTGG+AGG - chr3_1:87774029-87774048 Msa0384570:intron 50.0%
TGGCAGCCACAACCTCTTTA+AGG + chr3_1:87774145-87774164 None:intergenic 50.0%
TGGCTGCCAACAAAGAGGAT+CGG - chr3_1:87774156-87774175 Msa0384570:intron 50.0%
GAGCCTATGCTGAAAGGATC+AGG - chr3_1:87774282-87774301 Msa0384570:intron 50.0%
AAAGAAGACGCGGAAAGCTG+TGG - chr3_1:87774352-87774371 Msa0384570:intron 50.0%
GCTGTGGATGATCTTAGTCG+GGG - chr3_1:87774368-87774387 Msa0384570:intron 50.0%
CAAGGGTCTCAGTTAGGGTT+CGG + chr3_1:87774454-87774473 None:intergenic 50.0%
GGAGCAGAAAGTTCGAGCTA+AGG - chr3_1:87774529-87774548 Msa0384570:CDS 50.0%
GCAGAAAGTTCGAGCTAAGG+TGG - chr3_1:87774532-87774551 Msa0384570:CDS 50.0%
AACAGCAGAAGTCTCCTTGG+TGG - chr3_1:87774690-87774709 Msa0384570:five_prime_UTR 50.0%
TTGGAAGTTTGGAGGGGGAA+TGG - chr3_1:87775014-87775033 Msa0384570:five_prime_UTR 50.0%
GGATAAAACGCGCGGAACAC+AGG - chr3_1:87772029-87772048 Msa0384570:three_prime_UTR 55.0%
GAGGAGCTCAAGAGCAGAGA+GGG + chr3_1:87772421-87772440 None:intergenic 55.0%
TGAGGAGCTCAAGAGCAGAG+AGG + chr3_1:87772422-87772441 None:intergenic 55.0%
TCACCACAACCGTCAACCAC+AGG + chr3_1:87772973-87772992 None:intergenic 55.0%
AGGCCATTCTGCTTCCGGAA+TGG + chr3_1:87773206-87773225 None:intergenic 55.0%
! GCTCTAGGCCATTCTGCTTC+CGG + chr3_1:87773211-87773230 None:intergenic 55.0%
TCTGAGCACCTGCAACCGAA+TGG - chr3_1:87773276-87773295 Msa0384570:CDS 55.0%
CCTCTTTGACACCACGGTGT+TGG + chr3_1:87773324-87773343 None:intergenic 55.0%
! CCAACACCGTGGTGTCAAAG+AGG - chr3_1:87773321-87773340 Msa0384570:CDS 55.0%
! CCGTGGTGTCAAAGAGGTCA+TGG - chr3_1:87773327-87773346 Msa0384570:CDS 55.0%
TTCTGTGAGTTCAGCTGCCG+TGG - chr3_1:87773704-87773723 Msa0384570:CDS 55.0%
TGCTGGGAAGATGGGAAAGC+TGG - chr3_1:87773788-87773807 Msa0384570:intron 55.0%
GGTTGTGGCTGCCAACAAAG+AGG - chr3_1:87774151-87774170 Msa0384570:intron 55.0%
! ATGGAAGCGCAGGCGATCAT+TGG - chr3_1:87774191-87774210 Msa0384570:intron 55.0%
TGAAGCTTGGAGAGACTCGC+TGG - chr3_1:87774232-87774251 Msa0384570:intron 55.0%
TGCACTGCTGTGGTTGCTCT+TGG - chr3_1:87774961-87774980 Msa0384570:five_prime_UTR 55.0%
CTCAAGAGCAGAGAGGGTGG+TGG + chr3_1:87772415-87772434 None:intergenic 60.0%
GAGCTCAAGAGCAGAGAGGG+TGG + chr3_1:87772418-87772437 None:intergenic 60.0%
GGACCTGTGGTTGACGGTTG+TGG - chr3_1:87772967-87772986 Msa0384570:CDS 60.0%
GCTCAGTGTGCACACTGCTC+CGG - chr3_1:87773159-87773178 Msa0384570:CDS 60.0%
GTCGCTCTATCCCAACACCG+TGG - chr3_1:87773310-87773329 Msa0384570:CDS 60.0%
GAGTTCAGCTGCCGTGGAGT+TGG - chr3_1:87773710-87773729 Msa0384570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87771817 87775051 87771817 ID=Msa0384570;Name=Msa0384570
chr3_1 mRNA 87771817 87775051 87771817 ID=Msa0384570-mRNA-1;Parent=Msa0384570;Name=Msa0384570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=417|1|1|1|1|1|3|480|532
chr3_1 exon 87771817 87773427 87771817 ID=Msa0384570-mRNA-1:exon:23571;Parent=Msa0384570-mRNA-1
chr3_1 exon 87773505 87773746 87773505 ID=Msa0384570-mRNA-1:exon:23570;Parent=Msa0384570-mRNA-1
chr3_1 exon 87774409 87775051 87774409 ID=Msa0384570-mRNA-1:exon:23569;Parent=Msa0384570-mRNA-1
chr3_1 five_prime_UTR 87774635 87775051 87774635 ID=Msa0384570-mRNA-1:five_prime_utr;Parent=Msa0384570-mRNA-1
chr3_1 CDS 87774409 87774634 87774409 ID=Msa0384570-mRNA-1:cds;Parent=Msa0384570-mRNA-1
chr3_1 CDS 87773505 87773746 87773505 ID=Msa0384570-mRNA-1:cds;Parent=Msa0384570-mRNA-1
chr3_1 CDS 87772297 87773427 87772297 ID=Msa0384570-mRNA-1:cds;Parent=Msa0384570-mRNA-1
chr3_1 three_prime_UTR 87771817 87772296 87771817 ID=Msa0384570-mRNA-1:three_prime_utr;Parent=Msa0384570-mRNA-1
Gene Sequence

>Msa0384570

ATGGCCGTTTCAACCACTTTCTCCGGTCCCAAATTGGAGTCTCTATTCCTCAAATCTTCTTCTTCGAGGCTATCCATTCCCACCCATTTATCAGTTTTTGGGAAACCCAGAACCACTTTCACTCAAAAAGGAATTATTCGATGTGATGCTCAGAATTCTGATCAAACTAATGGTAGCACCACCACCCTCTCTGCTCTTGAGCTCCTCAAAACTTCTGCAGCTGATAGGTACACAAAGGAAAGGAGCAGCATTGTCGTCATTGGGCTCAGTGTGCACACTGCTCCGGTAGAAATGCGTGAAAAACTTGCCATTCCGGAAGCAGAATGGCCTAGAGCTATTGCAGAGTTGTGCAGTCTCAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTCGTCGCTCTATCCCAACACCGTGGTGTCAAAGAGGTCATGGAATGGATGTCAAAAACAAGTTCCGTTCCTGTTTCAGAGCTTTGCGAGCACCGGTTTTTACTTTACAACAAAGATGCCACACAACATCTTTTTCAAGTATCAGCTGGTCTTGAGTCTCTTGTATTGGGAGAAGGTCAAATTCTTGCACAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAACGGCTTTGGAAGAAACATTAGTGGTCTATTCAAGCATGCAATAACTGTCGGAAAAAGGGTTAGAGCAGAGACTAATATTGCTGCTGGGGCAGTTTCTGTGAGTTCAGCTGCCGTGGAGTTGGCCTATATGAAGCTACCTGAAGCCTCGCATGATAATGCCAGGATGCTGATTATCGGTGCTGGGAAGATGGGAAAGCTGGTCATCAAACATTTGGTTTCGAAAGGTTGCACAAGGATGGTTGTTGTCAATAGAACCGAGGAGAGAGTTGCTGCAATACGCGAAGAACTGAAGGATATTGAAATAATTTACAAACCTCTTTCAGAAATGCTCTCTTGTGTTTCTGAAGCAGATGTGGTATTCACCAGTACAGCATCAGAAAACCCATTATTCATGAAAGATGACGTCAAAGACCTTCCTCCAGCAAGTCAAGATGTTGGAGGCCTTCGCCTTTTCATCGACATTTCTGTTCCTCGAAATGTTGGTTCATGTGTCTCAGATATTGAATCTGTTCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATCGGCTTAGAAAAGCAATGGAAGCGCAGGCGATCATTGGTGAAGAGTTGAAACAATTTGAAGCTTGGAGAGACTCGCTGGAAACTGTTCCTACTATAAAAAAATTGAGAGCCTATGCTGAAAGGATCAGGGTTGCTGAGCTTGAGAAATGCTTGGGTAAGATGGGTGATGATATCTCAAAGAAGACGCGGAAAGCTGTGGATGATCTTAGTCGGGGTATTGTGAATAGGATGCTTCATGGTCCAATGCAACATTTAAGGTGTGATGGGAGTGACGACCGAACCCTAACTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTAGAGACTGAAATATCTGTTTTGGAGCAGAAAGTTCGAGCTAAGGTGGAACAAAACCAGAAGTGA

Protein sequence

>Msa0384570

MAVSTTFSGPKLESLFLKSSSSRLSIPTHLSVFGKPRTTFTQKGIIRCDAQNSDQTNGSTTTLSALELLKTSAADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSELCEHRFLLYNKDATQHLFQVSAGLESLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELAYMKLPEASHDNARMLIIGAGKMGKLVIKHLVSKGCTRMVVVNRTEERVAAIREELKDIEIIYKPLSEMLSCVSEADVVFTSTASENPLFMKDDVKDLPPASQDVGGLRLFIDISVPRNVGSCVSDIESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIGEELKQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLGKMGDDISKKTRKAVDDLSRGIVNRMLHGPMQHLRCDGSDDRTLTETLENMHALNRMFSLETEISVLEQKVRAKVEQNQK*