AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035090 MtrunA17_Chr7g0258361 98.718 234 3 0 1 234 1 234 1.03e-175 481
Msa1035090 MtrunA17_Chr4g0006411 34.177 158 102 2 39 194 50 207 5.21e-25 98.2
Msa1035090 MtrunA17_Chr3g0116671 26.064 188 135 1 17 200 52 239 2.42e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035090 AT2G42220.1 63.393 224 78 1 4 227 10 229 3.15e-106 306
Msa1035090 AT3G08920.1 36.478 159 99 2 39 195 37 195 4.01e-29 109
Msa1035090 AT4G24750.1 29.747 158 109 2 44 200 85 241 7.51e-17 78.2

Find 60 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTCTTAAACATTTAAA+TGG 0.144808 7_1:+70816751 None:intergenic
ATGTTATGCATGCTACATTT+TGG 0.221380 7_1:+70817385 None:intergenic
GTGTAGGTACATTCTTATTA+AGG 0.261610 7_1:-70818991 Msa1035090:intron
TTCACAGATTGCACGAAATC+AGG 0.282153 7_1:+70818911 None:intergenic
GAAATATGAGACTATAATTA+AGG 0.317983 7_1:-70816943 Msa1035090:three_prime_UTR
ACAATCAAGAGTTTAGTTTC+AGG 0.345374 7_1:+70818875 None:intergenic
TAAACTCTTGATTGTTTGTC+AGG 0.363215 7_1:-70818867 Msa1035090:CDS
GGAAAGAGATAATGTTAGTA+TGG 0.376907 7_1:-70816883 Msa1035090:three_prime_UTR
AAGGAACTTGTAAAAGTAGA+TGG 0.379059 7_1:-70819473 Msa1035090:CDS
CTGATCCAACTGGTCCCTTC+AGG 0.389584 7_1:-70817024 Msa1035090:CDS
ATCAGCTTCTCTGCTTGATC+AGG 0.390870 7_1:+70817042 None:intergenic
CACAATGCAAGGAGCATGCC+AGG 0.391332 7_1:-70819575 Msa1035090:CDS
GAATGCTGGCAAAGCTGGTT+TGG 0.410102 7_1:-70817215 Msa1035090:CDS
ATGTGATGTGAATGTGGTTA+TGG 0.411098 7_1:-70816909 Msa1035090:three_prime_UTR
TGCAGCAGCAAATAAGTTAG+AGG 0.420677 7_1:-70817418 Msa1035090:CDS
TTGCAGAATGCTGGCAAAGC+TGG 0.432034 7_1:-70817220 Msa1035090:CDS
GTAGGGACATTTGATTCTGT+TGG 0.435570 7_1:-70817253 Msa1035090:intron
GACTTCTTAAACATTTAAAT+GGG 0.435723 7_1:+70816752 None:intergenic
CTCTTGATTGTTTGTCAGGA+AGG 0.443131 7_1:-70818863 Msa1035090:CDS
AATGTAGCATGCATAACATC+TGG 0.456689 7_1:-70817381 Msa1035090:CDS
CATTGAGATACTAGCTTCCC+TGG 0.458379 7_1:+70819557 None:intergenic
GATTGCACGAAATCAGGGTT+TGG 0.467808 7_1:+70818917 None:intergenic
TCGACGGAGTTGCAGAATGC+TGG 0.475813 7_1:-70817229 Msa1035090:CDS
ACACACATTCTCACAATGGC+AGG 0.476693 7_1:-70819801 Msa1035090:exon
AGCAGAGAAGCTGATCCAAC+TGG 0.489566 7_1:-70817034 Msa1035090:CDS
TTCAAACATAGTAAGTTGCC+AGG 0.491819 7_1:-70816712 Msa1035090:three_prime_UTR
TAGTTCTTCAATACGGTACA+TGG 0.496428 7_1:+70816669 None:intergenic
TAATGTTAGTATGGCTATCA+TGG 0.501704 7_1:-70816874 Msa1035090:three_prime_UTR
GCAAATAAGTTAGAGGATGC+TGG 0.503197 7_1:-70817411 Msa1035090:CDS
TCAGCAACTTAGGGAGATGT+TGG 0.512330 7_1:-70819613 Msa1035090:intron
TCAGGGTTTGGCCTAGTGAA+TGG 0.517866 7_1:+70818929 None:intergenic
GAAAATACAGACAATGATCC+TGG 0.526626 7_1:-70819368 Msa1035090:intron
CTCTGCTTGATCAGGAAAGA+AGG 0.530924 7_1:+70817050 None:intergenic
AGGGGAAAACAACTAATCAA+TGG 0.533245 7_1:+70816986 None:intergenic
ATTTGATTCTGTTGGCTCGA+CGG 0.538513 7_1:-70817245 Msa1035090:CDS
CAACTTAGGGAGATGTTGGT+TGG 0.543322 7_1:-70819609 Msa1035090:CDS
TTGTTTGTCAGGAAGGATTG+AGG 0.546160 7_1:-70818856 Msa1035090:intron
TCACAGATTGCACGAAATCA+GGG 0.549040 7_1:+70818912 None:intergenic
CTTAGCCTGAAGGGACCAGT+TGG 0.559659 7_1:+70817019 None:intergenic
TGTAACAGCTGATGATGCTA+AGG 0.563299 7_1:-70819492 Msa1035090:CDS
CACAACATAACAAATTGTCC+TGG 0.566021 7_1:+70816694 None:intergenic
ATGTAACATGCATTATGTGA+GGG 0.566321 7_1:+70816967 None:intergenic
ATGTAACTAGTTCTTCAATA+CGG 0.568943 7_1:+70816662 None:intergenic
GGACTGCTTTCTCAACCTCC+TGG 0.569209 7_1:-70819779 Msa1035090:intron
AAGTTAAACACTACCACAGT+GGG 0.569586 7_1:+70816832 None:intergenic
GCTGGTTTGGTGCAAATCCA+AGG 0.574370 7_1:-70817202 Msa1035090:CDS
TATCTCAATGTAAAATGAGA+AGG 0.578861 7_1:-70819544 Msa1035090:CDS
TCTTTGGGATACCATTCACT+AGG 0.582807 7_1:-70818940 Msa1035090:CDS
ATGTGAATGTGGTTATGGAA+TGG 0.584101 7_1:-70816904 Msa1035090:three_prime_UTR
TATGTAACATGCATTATGTG+AGG 0.589318 7_1:+70816966 None:intergenic
GATATAATGTTCTTGATGTG+AGG 0.619269 7_1:-70819451 Msa1035090:CDS
GGACTTCAAACTGTGAAACC+AGG 0.620690 7_1:-70817360 Msa1035090:intron
ATATAATGTTCTTGATGTGA+GGG 0.640539 7_1:-70819450 Msa1035090:CDS
ACAATGCAAGGAGCATGCCA+GGG 0.648008 7_1:-70819574 Msa1035090:CDS
TGTAACATGCATTATGTGAG+GGG 0.651984 7_1:+70816968 None:intergenic
CACACATTCTCACAATGGCA+GGG 0.653331 7_1:-70819800 Msa1035090:exon
AATAAGAACAGTTCCCAACA+CGG 0.674863 7_1:+70817168 None:intergenic
ACAAACACACATTCTCACAA+TGG 0.693697 7_1:-70819805 Msa1035090:exon
AAAGTTAAACACTACCACAG+TGG 0.746658 7_1:+70816831 None:intergenic
CTAGATTGTCTATCCCACTG+TGG 0.766551 7_1:-70816845 Msa1035090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAGTTTTAAAATTGT+AGG - chr7_1:70817162-70817181 Msa1035090:intron 10.0%
!!! ATAGTATAAATAATTTTGGA+AGG + chr7_1:70817108-70817127 None:intergenic 15.0%
!!! ATGCATAGTATAAATAATTT+TGG + chr7_1:70817112-70817131 None:intergenic 15.0%
!!! TAAACATTTTAACATTAATC+TGG - chr7_1:70817213-70817232 Msa1035090:CDS 15.0%
!! ATATAATTAGCAATCAAAAT+GGG + chr7_1:70817626-70817645 None:intergenic 15.0%
!! TATATAATTAGCAATCAAAA+TGG + chr7_1:70817627-70817646 None:intergenic 15.0%
!!! AAATTCATTTTTGAATATTG+TGG + chr7_1:70818326-70818345 None:intergenic 15.0%
!!! TATAAAAAAAAACACTGTTT+TGG + chr7_1:70818851-70818870 None:intergenic 15.0%
!! AAAAAGAGATACATAGATAA+AGG - chr7_1:70817774-70817793 Msa1035090:intron 20.0%
!! TATCCTCATATTATAACAAT+TGG + chr7_1:70818224-70818243 None:intergenic 20.0%
!!! TTCAAGTTATGAAAATTCAT+AGG + chr7_1:70818937-70818956 None:intergenic 20.0%
!! TTAAAATATATCCATTCTGT+AGG - chr7_1:70819167-70819186 Msa1035090:intron 20.0%
!! TAAAATATATCCATTCTGTA+GGG - chr7_1:70819168-70819187 Msa1035090:intron 20.0%
!!! TTCTGTTTTATGAAATTTTC+AGG - chr7_1:70819348-70819367 Msa1035090:intron 20.0%
!! GAAATATGAGACTATAATTA+AGG - chr7_1:70819495-70819514 Msa1035090:CDS 20.0%
!! GACTTCTTAAACATTTAAAT+GGG + chr7_1:70819689-70819708 None:intergenic 20.0%
!! TGACTTCTTAAACATTTAAA+TGG + chr7_1:70819690-70819709 None:intergenic 20.0%
! AACATGATTATGAGTGATTA+AGG - chr7_1:70816794-70816813 Msa1035090:three_prime_UTR 25.0%
! TATCTCAATGTAAAATGAGA+AGG - chr7_1:70816894-70816913 Msa1035090:three_prime_UTR 25.0%
! ATATAATGTTCTTGATGTGA+GGG - chr7_1:70816988-70817007 Msa1035090:three_prime_UTR 25.0%
!! TCTGTATTTTCAACAAAAAG+AGG + chr7_1:70817061-70817080 None:intergenic 25.0%
!! TTTTAGACTGTACATAATGA+TGG + chr7_1:70817758-70817777 None:intergenic 25.0%
! TACCTAATATTGAGAAACAT+GGG - chr7_1:70817805-70817824 Msa1035090:intron 25.0%
! AAGCCAATTGTTATAATATG+AGG - chr7_1:70818218-70818237 Msa1035090:intron 25.0%
! TCATGTAAAAAAATAGGGTA+AGG + chr7_1:70818603-70818622 None:intergenic 25.0%
! AACACATAGAAATTTAGGTA+TGG - chr7_1:70818797-70818816 Msa1035090:intron 25.0%
! ACACATAGAAATTTAGGTAT+GGG - chr7_1:70818798-70818817 Msa1035090:intron 25.0%
!! GGAATTACTAATTTGAAGTT+CGG - chr7_1:70818823-70818842 Msa1035090:intron 25.0%
! AATCTTCAAATTACATCTCA+AGG + chr7_1:70818972-70818991 None:intergenic 25.0%
!! TAATTTTTCCTTCTTTGTCA+AGG - chr7_1:70818992-70819011 Msa1035090:intron 25.0%
! AATCAATGATTAACTAAACC+TGG + chr7_1:70819099-70819118 None:intergenic 25.0%
!!! AAAGACATTGTTTTGCTTAA+TGG + chr7_1:70819633-70819652 None:intergenic 25.0%
!! ATGTAACTAGTTCTTCAATA+CGG + chr7_1:70819779-70819798 None:intergenic 25.0%
AGTTAAGATAAGTAGTTACC+AGG + chr7_1:70816680-70816699 None:intergenic 30.0%
TAGTAAAAACTCACAATGCA+AGG - chr7_1:70816852-70816871 Msa1035090:three_prime_UTR 30.0%
AAGGAACTTGTAAAAGTAGA+TGG - chr7_1:70816965-70816984 Msa1035090:three_prime_UTR 30.0%
GATATAATGTTCTTGATGTG+AGG - chr7_1:70816987-70817006 Msa1035090:three_prime_UTR 30.0%
AAATGGACAAATGTGATGAA+GGG - chr7_1:70817292-70817311 Msa1035090:intron 30.0%
!!! ATGAATCCATATTTTAGTCC+TGG + chr7_1:70817381-70817400 None:intergenic 30.0%
!!! TCATTGCATTGATTTTGTGT+AGG - chr7_1:70817431-70817450 Msa1035090:intron 30.0%
GTGTAGGTACATTCTTATTA+AGG - chr7_1:70817447-70817466 Msa1035090:intron 30.0%
! ACTGTGCACAATAATTTTTC+TGG - chr7_1:70817470-70817489 Msa1035090:intron 30.0%
! CTGTGCACAATAATTTTTCT+GGG - chr7_1:70817471-70817490 Msa1035090:intron 30.0%
! AATTTTTCTGGGTTGTTCTT+TGG - chr7_1:70817482-70817501 Msa1035090:intron 30.0%
! ATTTTTCTGGGTTGTTCTTT+GGG - chr7_1:70817483-70817502 Msa1035090:intron 30.0%
! ACAATCAAGAGTTTAGTTTC+AGG + chr7_1:70817566-70817585 None:intergenic 30.0%
TAAACTCTTGATTGTTTGTC+AGG - chr7_1:70817571-70817590 Msa1035090:intron 30.0%
AATTAGCAATCAAAATGGGT+AGG + chr7_1:70817622-70817641 None:intergenic 30.0%
CATAATGATGGTATAGTACA+TGG + chr7_1:70817746-70817765 None:intergenic 30.0%
CTACCTAATATTGAGAAACA+TGG - chr7_1:70817804-70817823 Msa1035090:intron 30.0%
TTCCCATGTTTCTCAATATT+AGG + chr7_1:70817810-70817829 None:intergenic 30.0%
AGAGCATATGATCACATTTA+TGG + chr7_1:70817848-70817867 None:intergenic 30.0%
TATTGTGATACTTGATACCT+TGG - chr7_1:70817948-70817967 Msa1035090:intron 30.0%
TTATTGTGCTCAATGAACAT+AGG - chr7_1:70818050-70818069 Msa1035090:intron 30.0%
!!! GAATTGGTTTATTTTTGTGC+TGG + chr7_1:70818288-70818307 None:intergenic 30.0%
GAAATTGACATGATCTGAAT+TGG + chr7_1:70818304-70818323 None:intergenic 30.0%
!!! ACCCTATTTTTTTACATGAG+AGG - chr7_1:70818604-70818623 Msa1035090:intron 30.0%
GCCTCTCATGTAAAAAAATA+GGG + chr7_1:70818608-70818627 None:intergenic 30.0%
AGCCTCTCATGTAAAAAAAT+AGG + chr7_1:70818609-70818628 None:intergenic 30.0%
! TAATAAGTGTCCTTTTGTGA+GGG + chr7_1:70818700-70818719 None:intergenic 30.0%
! ATAATAAGTGTCCTTTTGTG+AGG + chr7_1:70818701-70818720 None:intergenic 30.0%
GCAAGAACACATAGAAATTT+AGG - chr7_1:70818792-70818811 Msa1035090:intron 30.0%
ATAGAAATTTAGGTATGGGT+GGG - chr7_1:70818802-70818821 Msa1035090:intron 30.0%
!!! ATAGGATTTTTTGCTTCTTG+TGG + chr7_1:70818919-70818938 None:intergenic 30.0%
! ATGTTATGCATGCTACATTT+TGG + chr7_1:70819056-70819075 None:intergenic 30.0%
ATGTAACATGCATTATGTGA+GGG + chr7_1:70819474-70819493 None:intergenic 30.0%
TATGTAACATGCATTATGTG+AGG + chr7_1:70819475-70819494 None:intergenic 30.0%
AAAAACATGTGATGTGAATG+TGG - chr7_1:70819523-70819542 Msa1035090:CDS 30.0%
GGAAAGAGATAATGTTAGTA+TGG - chr7_1:70819555-70819574 Msa1035090:CDS 30.0%
TAATGTTAGTATGGCTATCA+TGG - chr7_1:70819564-70819583 Msa1035090:CDS 30.0%
ACAAACACACATTCTCACAA+TGG - chr7_1:70816633-70816652 Msa1035090:three_prime_UTR 35.0%
TAAGATAAGTAGTTACCAGG+AGG + chr7_1:70816677-70816696 None:intergenic 35.0%
! GTTGTGTTTTCAGCAACTTA+GGG - chr7_1:70816816-70816835 Msa1035090:three_prime_UTR 35.0%
GAAAATACAGACAATGATCC+TGG - chr7_1:70817070-70817089 Msa1035090:CDS 35.0%
TTAAGTCACATTTATCCCTC+CGG - chr7_1:70817248-70817267 Msa1035090:CDS 35.0%
ATCACATTTGTCCATTTGGA+CGG + chr7_1:70817289-70817308 None:intergenic 35.0%
CTTCATCACATTTGTCCATT+TGG + chr7_1:70817293-70817312 None:intergenic 35.0%
CAAATGGACAAATGTGATGA+AGG - chr7_1:70817291-70817310 Msa1035090:intron 35.0%
ACTCGTCTCTATTAGATTCT+TGG + chr7_1:70817880-70817899 None:intergenic 35.0%
TAGCAGTATTACCAGAATGT+AGG - chr7_1:70817908-70817927 Msa1035090:intron 35.0%
TATTACCAGAATGTAGGCAA+TGG - chr7_1:70817914-70817933 Msa1035090:intron 35.0%
! ACTGAATCACTGATTATCCA+AGG + chr7_1:70817968-70817987 None:intergenic 35.0%
GTGTACTTAATGTCACAGAT+GGG + chr7_1:70818102-70818121 None:intergenic 35.0%
AGTGTACTTAATGTCACAGA+TGG + chr7_1:70818103-70818122 None:intergenic 35.0%
ATGATACCGATAACCCAAAT+AGG - chr7_1:70818414-70818433 Msa1035090:intron 35.0%
! TTCTGTCCTATTTGGGTTAT+CGG + chr7_1:70818423-70818442 None:intergenic 35.0%
TCATGTGATTGAAATGTCAC+AGG + chr7_1:70818648-70818667 None:intergenic 35.0%
! AATAAGTGTCCTTTTGTGAG+GGG + chr7_1:70818699-70818718 None:intergenic 35.0%
TACCCAAAAACTAAACACCT+TGG - chr7_1:70818722-70818741 Msa1035090:intron 35.0%
ACCCAAAAACTAAACACCTT+GGG - chr7_1:70818723-70818742 Msa1035090:intron 35.0%
CATAGAAATTTAGGTATGGG+TGG - chr7_1:70818801-70818820 Msa1035090:intron 35.0%
AATGTAGCATGCATAACATC+TGG - chr7_1:70819057-70819076 Msa1035090:intron 35.0%
AATCAAATGTCCCTACAGAA+TGG + chr7_1:70819181-70819200 None:intergenic 35.0%
AATAAGAACAGTTCCCAACA+CGG + chr7_1:70819273-70819292 None:intergenic 35.0%
!!! ACTTTTAGTCTTAGCCTGAA+GGG + chr7_1:70819431-70819450 None:intergenic 35.0%
!!! AACTTTTAGTCTTAGCCTGA+AGG + chr7_1:70819432-70819451 None:intergenic 35.0%
AGGGGAAAACAACTAATCAA+TGG + chr7_1:70819455-70819474 None:intergenic 35.0%
TGTAACATGCATTATGTGAG+GGG + chr7_1:70819473-70819492 None:intergenic 35.0%
ATGTGATGTGAATGTGGTTA+TGG - chr7_1:70819529-70819548 Msa1035090:CDS 35.0%
ATGTGAATGTGGTTATGGAA+TGG - chr7_1:70819534-70819553 Msa1035090:CDS 35.0%
AAGTTAAACACTACCACAGT+GGG + chr7_1:70819609-70819628 None:intergenic 35.0%
AAAGTTAAACACTACCACAG+TGG + chr7_1:70819610-70819629 None:intergenic 35.0%
TTCAAACATAGTAAGTTGCC+AGG - chr7_1:70819726-70819745 Msa1035090:intron 35.0%
CACAACATAACAAATTGTCC+TGG + chr7_1:70819747-70819766 None:intergenic 35.0%
TAGTTCTTCAATACGGTACA+TGG + chr7_1:70819772-70819791 None:intergenic 35.0%
! GGTTGTGTTTTCAGCAACTT+AGG - chr7_1:70816815-70816834 Msa1035090:three_prime_UTR 40.0%
! TGTAACAGCTGATGATGCTA+AGG - chr7_1:70816946-70816965 Msa1035090:three_prime_UTR 40.0%
TACAGACAATGATCCTGGTA+TGG - chr7_1:70817075-70817094 Msa1035090:intron 40.0%
GGAGGGATAAATGTGACTTA+AGG + chr7_1:70817249-70817268 None:intergenic 40.0%
TAAGTCACATTTATCCCTCC+GGG - chr7_1:70817249-70817268 Msa1035090:CDS 40.0%
ATTTCAATGACCCGTCCAAA+TGG - chr7_1:70817275-70817294 Msa1035090:intron 40.0%
TCACATTTGTCCATTTGGAC+GGG + chr7_1:70817288-70817307 None:intergenic 40.0%
ATTTCATCCCTACAACTTCC+AGG - chr7_1:70817354-70817373 Msa1035090:intron 40.0%
!! TCTTTGGGATACCATTCACT+AGG - chr7_1:70817498-70817517 Msa1035090:intron 40.0%
TCACAGATTGCACGAAATCA+GGG + chr7_1:70817529-70817548 None:intergenic 40.0%
TTCACAGATTGCACGAAATC+AGG + chr7_1:70817530-70817549 None:intergenic 40.0%
CTCTTGATTGTTTGTCAGGA+AGG - chr7_1:70817575-70817594 Msa1035090:intron 40.0%
TTGTTTGTCAGGAAGGATTG+AGG - chr7_1:70817582-70817601 Msa1035090:intron 40.0%
CGGGATCTTCATGAAAGTTT+GGG + chr7_1:70817651-70817670 None:intergenic 40.0%
TCGGGATCTTCATGAAAGTT+TGG + chr7_1:70817652-70817671 None:intergenic 40.0%
AACCAAACCAAAAGCAGAGT+CGG + chr7_1:70817671-70817690 None:intergenic 40.0%
TAGCATTCTCTCACACTAGT+CGG + chr7_1:70817992-70818011 None:intergenic 40.0%
GCTCAATGAACATAGGAAGA+TGG - chr7_1:70818057-70818076 Msa1035090:intron 40.0%
GCGTAGGAGTTTCATGTAAT+AGG + chr7_1:70818381-70818400 None:intergenic 40.0%
CGGTATCATTCTCGGATATT+GGG + chr7_1:70818403-70818422 None:intergenic 40.0%
TCGGTATCATTCTCGGATAT+TGG + chr7_1:70818404-70818423 None:intergenic 40.0%
TGGGTTATCGGTATCATTCT+CGG + chr7_1:70818411-70818430 None:intergenic 40.0%
ATTAAAGCTCCCGAATACGT+AGG - chr7_1:70818537-70818556 Msa1035090:intron 40.0%
TTAAAGCTCCCGAATACGTA+GGG - chr7_1:70818538-70818557 Msa1035090:intron 40.0%
GTTGCGTACAATACACCAAA+TGG + chr7_1:70818581-70818600 None:intergenic 40.0%
! ATAAGTGTCCTTTTGTGAGG+GGG + chr7_1:70818698-70818717 None:intergenic 40.0%
!!! GCCCAAGGTGTTTAGTTTTT+GGG + chr7_1:70818727-70818746 None:intergenic 40.0%
TGCAGCAGCAAATAAGTTAG+AGG - chr7_1:70819020-70819039 Msa1035090:intron 40.0%
GCAAATAAGTTAGAGGATGC+TGG - chr7_1:70819027-70819046 Msa1035090:intron 40.0%
GTAGGGACATTTGATTCTGT+TGG - chr7_1:70819185-70819204 Msa1035090:intron 40.0%
!! ATTTGATTCTGTTGGCTCGA+CGG - chr7_1:70819193-70819212 Msa1035090:intron 40.0%
! ACACGGCTGAAATTTTTCCT+TGG + chr7_1:70819256-70819275 None:intergenic 40.0%
AGGAAAAATTTCAGCCGTGT+TGG - chr7_1:70819256-70819275 Msa1035090:intron 40.0%
GGAAAAATTTCAGCCGTGTT+GGG - chr7_1:70819257-70819276 Msa1035090:intron 40.0%
ACACACATTCTCACAATGGC+AGG - chr7_1:70816637-70816656 Msa1035090:three_prime_UTR 45.0%
CACACATTCTCACAATGGCA+GGG - chr7_1:70816638-70816657 Msa1035090:three_prime_UTR 45.0%
TCAGCAACTTAGGGAGATGT+TGG - chr7_1:70816825-70816844 Msa1035090:three_prime_UTR 45.0%
CAACTTAGGGAGATGTTGGT+TGG - chr7_1:70816829-70816848 Msa1035090:three_prime_UTR 45.0%
! CATTGAGATACTAGCTTCCC+TGG + chr7_1:70816884-70816903 None:intergenic 45.0%
GGAAGGAGAAATTCCATACC+AGG + chr7_1:70817091-70817110 None:intergenic 45.0%
GTCATTGAAATTGTCCCGGA+GGG + chr7_1:70817266-70817285 None:intergenic 45.0%
ACGGGTCATTGAAATTGTCC+CGG + chr7_1:70817270-70817289 None:intergenic 45.0%
!!! CCATATTTTAGTCCTGGTCC+TGG + chr7_1:70817375-70817394 None:intergenic 45.0%
CCAGGACCAGGACTAAAATA+TGG - chr7_1:70817372-70817391 Msa1035090:CDS 45.0%
GATTGCACGAAATCAGGGTT+TGG + chr7_1:70817524-70817543 None:intergenic 45.0%
ACCAAACCAAAAGCAGAGTC+GGG + chr7_1:70817670-70817689 None:intergenic 45.0%
CTCATCCATTGCCTACATTC+TGG + chr7_1:70817922-70817941 None:intergenic 45.0%
CAGAATGTAGGCAATGGATG+AGG - chr7_1:70817920-70817939 Msa1035090:intron 45.0%
AGTGTGAGAGAATGCTACCA+CGG - chr7_1:70817995-70818014 Msa1035090:intron 45.0%
! CAAGAAGTCAGGTACTGCAT+CGG + chr7_1:70818127-70818146 None:intergenic 45.0%
TATCCTACCACCAAGAAGTC+AGG + chr7_1:70818138-70818157 None:intergenic 45.0%
AAAGATCCTGAAAGCCTTCG+CGG - chr7_1:70818158-70818177 Msa1035090:intron 45.0%
GCTGGTATCATTTCTGCAGT+TGG + chr7_1:70818270-70818289 None:intergenic 45.0%
GTGGAGGTTCTGTCCTATTT+GGG + chr7_1:70818430-70818449 None:intergenic 45.0%
TGTGGAGGTTCTGTCCTATT+TGG + chr7_1:70818431-70818450 None:intergenic 45.0%
GTTGTGATTGGAGGTTACCT+CGG + chr7_1:70818477-70818496 None:intergenic 45.0%
TAACCTCCAATCACAACCAG+AGG - chr7_1:70818480-70818499 Msa1035090:intron 45.0%
AACCTCCAATCACAACCAGA+GGG - chr7_1:70818481-70818500 Msa1035090:intron 45.0%
TTCATCCCTCTGGTTGTGAT+TGG + chr7_1:70818489-70818508 None:intergenic 45.0%
!!! GGCCCAAGGTGTTTAGTTTT+TGG + chr7_1:70818728-70818747 None:intergenic 45.0%
GGACTTCAAACTGTGAAACC+AGG - chr7_1:70819078-70819097 Msa1035090:intron 45.0%
CTCTGCTTGATCAGGAAAGA+AGG + chr7_1:70819391-70819410 None:intergenic 45.0%
ATCAGCTTCTCTGCTTGATC+AGG + chr7_1:70819399-70819418 None:intergenic 45.0%
CTAGATTGTCTATCCCACTG+TGG - chr7_1:70819593-70819612 Msa1035090:CDS 45.0%
!!! TTTTTTTTTATAAATTTGTA+AGG - chr7_1:70818859-70818878 Msa1035090:CDS 5.0%
! ACAATGCAAGGAGCATGCCA+GGG - chr7_1:70816864-70816883 Msa1035090:three_prime_UTR 50.0%
GGTCATTGAAATTGTCCCGG+AGG + chr7_1:70817267-70817286 None:intergenic 50.0%
TCCTGGTCCTGGAAGTTGTA+GGG + chr7_1:70817364-70817383 None:intergenic 50.0%
TCAGGGTTTGGCCTAGTGAA+TGG + chr7_1:70817512-70817531 None:intergenic 50.0%
! GAAGATCCCGACTCTGCTTT+TGG - chr7_1:70817661-70817680 Msa1035090:intron 50.0%
!! TCCCGACTCTGCTTTTGGTT+TGG - chr7_1:70817666-70817685 Msa1035090:intron 50.0%
TGAGAGAATGCTACCACGGA+GGG - chr7_1:70817999-70818018 Msa1035090:intron 50.0%
CGATGCAGTACCTGACTTCT+TGG - chr7_1:70818125-70818144 Msa1035090:intron 50.0%
TGCAGTACCTGACTTCTTGG+TGG - chr7_1:70818128-70818147 Msa1035090:intron 50.0%
! GTACCTGACTTCTTGGTGGT+AGG - chr7_1:70818132-70818151 Msa1035090:intron 50.0%
CATTCTCGGATATTGGGCGT+AGG + chr7_1:70818397-70818416 None:intergenic 50.0%
ACAGAACCTCCACAATGACG+AGG - chr7_1:70818437-70818456 Msa1035090:intron 50.0%
ATCCCTCTGGTTGTGATTGG+AGG + chr7_1:70818486-70818505 None:intergenic 50.0%
! AGCACGTTGTTTCATCCCTC+TGG + chr7_1:70818499-70818518 None:intergenic 50.0%
TTTCCGGACCCTACGTATTC+GGG + chr7_1:70818549-70818568 None:intergenic 50.0%
CTTTCCGGACCCTACGTATT+CGG + chr7_1:70818550-70818569 None:intergenic 50.0%
GAATACGTAGGGTCCGGAAA+GGG - chr7_1:70818549-70818568 Msa1035090:intron 50.0%
AATACGTAGGGTCCGGAAAG+GGG - chr7_1:70818550-70818569 Msa1035090:intron 50.0%
CAAATGGTGAGACCCCTTTC+CGG + chr7_1:70818565-70818584 None:intergenic 50.0%
ACAATTGTACCGTTGCGCCA+AGG - chr7_1:70818670-70818689 Msa1035090:intron 50.0%
AACACCTTGGGCCTTGATCT+TGG - chr7_1:70818735-70818754 Msa1035090:intron 50.0%
GCAGCAGACCTTGACAAAGA+AGG + chr7_1:70819003-70819022 None:intergenic 50.0%
TTGCAGAATGCTGGCAAAGC+TGG - chr7_1:70819218-70819237 Msa1035090:intron 50.0%
GAATGCTGGCAAAGCTGGTT+TGG - chr7_1:70819223-70819242 Msa1035090:intron 50.0%
!! GCTGGTTTGGTGCAAATCCA+AGG - chr7_1:70819236-70819255 Msa1035090:intron 50.0%
AGCAGAGAAGCTGATCCAAC+TGG - chr7_1:70819404-70819423 Msa1035090:CDS 50.0%
GGACTGCTTTCTCAACCTCC+TGG - chr7_1:70816659-70816678 Msa1035090:three_prime_UTR 55.0%
! CACAATGCAAGGAGCATGCC+AGG - chr7_1:70816863-70816882 Msa1035090:three_prime_UTR 55.0%
TCCCTACAACTTCCAGGACC+AGG - chr7_1:70817360-70817379 Msa1035090:intron 55.0%
GTCCTGGTCCTGGAAGTTGT+AGG + chr7_1:70817365-70817384 None:intergenic 55.0%
GTGAGAGAATGCTACCACGG+AGG - chr7_1:70817998-70818017 Msa1035090:intron 55.0%
AAAGCCTTCGCGGTGGATGA+TGG - chr7_1:70818168-70818187 Msa1035090:intron 55.0%
ATCTCCATCATCCACCGCGA+AGG + chr7_1:70818175-70818194 None:intergenic 55.0%
CTCCACAATGACGAGGACGT+GGG - chr7_1:70818444-70818463 Msa1035090:intron 55.0%
TTCCCACGTCCTCGTCATTG+TGG + chr7_1:70818449-70818468 None:intergenic 55.0%
AGGACGTGGGAAGTTATCCG+AGG - chr7_1:70818457-70818476 Msa1035090:intron 55.0%
CGAATACGTAGGGTCCGGAA+AGG - chr7_1:70818548-70818567 Msa1035090:intron 55.0%
CGGAAAGGGGTCTCACCATT+TGG - chr7_1:70818563-70818582 Msa1035090:intron 55.0%
TCGACGGAGTTGCAGAATGC+TGG - chr7_1:70819209-70819228 Msa1035090:intron 55.0%
CTGATCCAACTGGTCCCTTC+AGG - chr7_1:70819414-70819433 Msa1035090:CDS 55.0%
CTTAGCCTGAAGGGACCAGT+TGG + chr7_1:70819422-70819441 None:intergenic 55.0%
GCTACCACGGAGGGCTACTT+TGG - chr7_1:70818008-70818027 Msa1035090:intron 60.0%
! GGAGGGCTACTTTGGCTGCA+TGG - chr7_1:70818016-70818035 Msa1035090:intron 60.0%
GATCCTGAAAGCCTTCGCGG+TGG - chr7_1:70818161-70818180 Msa1035090:intron 60.0%
CATCCACCGCGAAGGCTTTC+AGG + chr7_1:70818167-70818186 None:intergenic 60.0%
CCACGTCCTCGTCATTGTGG+AGG + chr7_1:70818446-70818465 None:intergenic 60.0%
CCTCCACAATGACGAGGACG+TGG - chr7_1:70818443-70818462 Msa1035090:intron 60.0%
GCTCCCGAATACGTAGGGTC+CGG - chr7_1:70818543-70818562 Msa1035090:intron 60.0%
! CCTTTTGTGAGGGGGAGCCT+TGG + chr7_1:70818690-70818709 None:intergenic 60.0%
CCAAGGCTCCCCCTCACAAA+AGG - chr7_1:70818687-70818706 Msa1035090:intron 60.0%
CGTGCCAAGATCAAGGCCCA+AGG + chr7_1:70818742-70818761 None:intergenic 60.0%
CCAGCGACGTGCCAAGATCA+AGG + chr7_1:70818749-70818768 None:intergenic 60.0%
CCTTGATCTTGGCACGTCGC+TGG - chr7_1:70818746-70818765 Msa1035090:intron 60.0%
ATCTTGGCACGTCGCTGGCA+AGG - chr7_1:70818751-70818770 Msa1035090:intron 60.0%
GCAGCCAAAGTAGCCCTCCG+TGG + chr7_1:70818015-70818034 None:intergenic 65.0%
GAGGGGGAGCCTTGGCGCAA+CGG + chr7_1:70818682-70818701 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70816630 70819830 70816630 ID=Msa1035090;Name=Msa1035090
chr7_1 mRNA 70816630 70819830 70816630 ID=Msa1035090-mRNA-1;Parent=Msa1035090;Name=Msa1035090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=22|1|1|1|0.8|0.83|6|390|234
chr7_1 exon 70816630 70817090 70816630 ID=Msa1035090-mRNA-1:exon:17030;Parent=Msa1035090-mRNA-1
chr7_1 exon 70817167 70817271 70817167 ID=Msa1035090-mRNA-1:exon:17029;Parent=Msa1035090-mRNA-1
chr7_1 exon 70817361 70817446 70817361 ID=Msa1035090-mRNA-1:exon:17028;Parent=Msa1035090-mRNA-1
chr7_1 exon 70818857 70819007 70818857 ID=Msa1035090-mRNA-1:exon:17027;Parent=Msa1035090-mRNA-1
chr7_1 exon 70819369 70819631 70819369 ID=Msa1035090-mRNA-1:exon:17026;Parent=Msa1035090-mRNA-1
chr7_1 exon 70819780 70819830 70819780 ID=Msa1035090-mRNA-1:exon:17025;Parent=Msa1035090-mRNA-1
chr7_1 five_prime_UTR 70819809 70819830 70819809 ID=Msa1035090-mRNA-1:five_prime_utr;Parent=Msa1035090-mRNA-1
chr7_1 CDS 70819780 70819808 70819780 ID=Msa1035090-mRNA-1:cds;Parent=Msa1035090-mRNA-1
chr7_1 CDS 70819369 70819631 70819369 ID=Msa1035090-mRNA-1:cds;Parent=Msa1035090-mRNA-1
chr7_1 CDS 70818857 70819007 70818857 ID=Msa1035090-mRNA-1:cds;Parent=Msa1035090-mRNA-1
chr7_1 CDS 70817361 70817446 70817361 ID=Msa1035090-mRNA-1:cds;Parent=Msa1035090-mRNA-1
chr7_1 CDS 70817167 70817271 70817167 ID=Msa1035090-mRNA-1:cds;Parent=Msa1035090-mRNA-1
chr7_1 CDS 70817020 70817090 70817020 ID=Msa1035090-mRNA-1:cds;Parent=Msa1035090-mRNA-1
chr7_1 three_prime_UTR 70816630 70817019 70816630 ID=Msa1035090-mRNA-1:three_prime_utr;Parent=Msa1035090-mRNA-1
Gene Sequence

>Msa1035090

ATGGCAGGGACTGCTTTCTCAACCTCCTGCAACTTAGGGAGATGTTGGTTGGTAGTAAAAACTCACAATGCAAGGAGCATGCCAGGGAAGCTAGTATCTCAATGTAAAATGAGAAGGAAGTTTACAATAAAAGCAGAAATTAAGTTTGTAACAGCTGATGATGCTAAGGAACTTGTAAAAGTAGATGGATATAATGTTCTTGATGTGAGGGACAAATCTCAATATGAAAGAGCACACATTAAAACATGTTATCATGTTCCTCTTTTTGTTGAAAATACAGACAATGATCCTGGTACATTCTTATTAAGGACTGTGCACAATAATTTTTCTGGGTTGTTCTTTGGGATACCATTCACTAGGCCAAACCCTGATTTCGTGCAATCTGTGAAGAGTCAAATACAGCCTGAAACTAAACTCTTGATTGTTTGTCAGGAAGGATTGAGGTCTGCTGCAGCAGCAAATAAGTTAGAGGATGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAAACTGTGAAACCAGGGACATTTGATTCTGTTGGCTCGACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATCCAAGGAAAAATTTCAGCCGTGTTGGGAACTGTTCTTATTTGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGATCCAACTGGTCCCTTCAGGCTAA

Protein sequence

>Msa1035090

MAGTAFSTSCNLGRCWLVVKTHNARSMPGKLVSQCKMRRKFTIKAEIKFVTADDAKELVKVDGYNVLDVRDKSQYERAHIKTCYHVPLFVENTDNDPGTFLLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSAAAANKLEDAGFQNVACITSGLQTVKPGTFDSVGSTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPSG*