AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0562040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562040 MtrunA17_Chr4g0052911 91.855 221 15 2 1 218 1 221 5.45e-139 391
Msa0562040 MtrunA17_Chr8g0382711 53.509 114 52 1 105 218 76 188 3.56e-34 123
Msa0562040 MtrunA17_Chr8g0339171 50.633 79 33 1 134 212 46 118 1.16e-19 83.2
Msa0562040 MtrunA17_Chr5g0396231 40.000 110 56 4 108 214 381 483 1.79e-15 75.9
Msa0562040 MtrunA17_Chr4g0033841 35.862 145 63 5 77 202 55 188 1.87e-13 68.2
Msa0562040 MtrunA17_Chr8g0377771 41.333 75 38 1 138 212 56 124 1.55e-11 64.3
Msa0562040 MtrunA17_Chr7g0234801 40.000 75 39 1 138 212 52 120 2.17e-11 63.9
Msa0562040 MtrunA17_Chr8g0335211 37.113 97 55 1 110 206 89 179 2.50e-11 62.0
Msa0562040 MtrunA17_Chr7g0255551 37.333 75 41 1 138 212 39 107 2.55e-11 63.5
Msa0562040 MtrunA17_Chr8g0339141 41.333 75 38 1 138 212 58 126 6.30e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562040 AT5G45680.1 57.868 197 65 5 32 218 1 189 5.96e-70 215
Msa0562040 AT4G39710.1 44.521 146 72 3 81 218 48 192 1.18e-34 125
Msa0562040 AT4G39710.3 44.521 146 72 3 81 218 48 192 1.18e-34 125
Msa0562040 AT4G39710.2 43.697 119 58 3 81 191 48 165 3.99e-25 99.0
Msa0562040 AT5G48580.1 51.899 79 32 1 134 212 48 120 4.95e-20 85.1
Msa0562040 AT3G25220.1 50.633 79 33 1 134 212 48 120 3.69e-19 82.4
Msa0562040 AT4G25340.1 39.130 115 60 4 102 213 351 458 1.00e-16 80.1
Msa0562040 AT5G05420.1 47.619 84 36 3 132 214 50 126 1.61e-16 75.1
Msa0562040 AT2G43560.2 48.193 83 37 1 120 202 50 126 6.53e-15 71.2
Msa0562040 AT2G43560.1 48.193 83 37 1 120 202 106 182 7.18e-15 72.4
Msa0562040 AT5G48570.1 42.667 75 37 1 138 212 65 133 7.59e-12 65.9
Msa0562040 AT3G10060.1 33.143 175 93 7 69 229 51 215 1.52e-11 63.2
Msa0562040 AT3G60370.1 38.202 89 49 1 118 206 118 200 2.37e-11 62.8
Msa0562040 AT3G60370.2 38.202 89 49 1 118 206 147 229 3.02e-11 62.8
Msa0562040 AT3G25230.1 40.000 75 39 1 138 212 57 125 6.24e-11 62.8
Msa0562040 AT3G25230.2 40.000 75 39 1 138 212 57 125 7.03e-11 62.8

Find 91 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAACATGTAAATTAAA+AGG 0.157184 4_1:-61703755 None:intergenic
TTGAAGCTTCCTCCAGAATT+TGG 0.175545 4_1:+61702626 Msa0562040:CDS
CACTGGTCCTCAGGCTGTTA+AGG 0.245682 4_1:+61701719 Msa0562040:CDS
CTAGGCCTCTCCTTGAGTTT+TGG 0.246586 4_1:+61701582 Msa0562040:CDS
GATACACTACCAGTTTAAAA+AGG 0.276962 4_1:+61703982 Msa0562040:three_prime_UTR
TTAGTAAGTTAGTAGTAATA+TGG 0.277197 4_1:-61701359 None:intergenic
GCTGTTGCAGTGGGTATTAT+TGG 0.296220 4_1:-61701627 None:intergenic
TTGTTGAAGTGGTTCTTATA+AGG 0.296962 4_1:+61702776 Msa0562040:intron
AACTCATTTCCACTGAATTC+AGG 0.301778 4_1:-61701407 None:intergenic
GCTCTAGATCACATTGATAA+AGG 0.301927 4_1:+61703819 Msa0562040:three_prime_UTR
TGTTAAGGGGCAGCTTATTA+AGG 0.305394 4_1:+61701734 Msa0562040:CDS
CTTGAGCCATATCCAAATTC+TGG 0.313714 4_1:-61702638 None:intergenic
TCCTATTGTGATAAAATTGT+AGG 0.321006 4_1:+61701696 Msa0562040:CDS
GGAATTCCTCCTATGCTTAC+AGG 0.339705 4_1:+61702500 Msa0562040:CDS
CTTCCTCCAGAATTTGGATA+TGG 0.340666 4_1:+61702632 Msa0562040:CDS
TTTCCACTGAATTCAGGATA+TGG 0.346588 4_1:-61701401 None:intergenic
AGGCAAGTCCCAACTGAATA+TGG 0.354350 4_1:-61701438 None:intergenic
GGTAATGCTTTGGGTCCCTT+TGG 0.365652 4_1:+61701291 None:intergenic
GGCACATTATGTGGGGAGAT+TGG 0.379326 4_1:+61701984 Msa0562040:intron
TGTCTTCGGTTGGTGCTAAT+AGG 0.383900 4_1:+61702814 Msa0562040:CDS
TTACCTTCCTTGAATTTCCT+TGG 0.390463 4_1:+61703701 Msa0562040:CDS
ATCAAACATGTAAATTAAAA+GGG 0.396485 4_1:-61703754 None:intergenic
GTAATGCTTTGGGTCCCTTT+GGG 0.408694 4_1:+61701292 None:intergenic
GAATTAACAGTGGCTCCTTC+AGG 0.416975 4_1:+61701669 Msa0562040:CDS
ACTGGTCCTCAGGCTGTTAA+GGG 0.419221 4_1:+61701720 Msa0562040:CDS
TCGAATAAGAGTACCGCATC+GGG 0.420967 4_1:-61703630 None:intergenic
TTAATGTTAGGCACATTATG+TGG 0.439371 4_1:+61701975 Msa0562040:intron
CCTTGAATTTCCTTGGAGAT+CGG 0.447987 4_1:+61703708 Msa0562040:CDS
GTTGCAATAAAGAATGTAGA+AGG 0.459506 4_1:-61701605 None:intergenic
AATTGTAGGCACTGGTCCTC+AGG 0.460071 4_1:+61701710 Msa0562040:CDS
ACCACCAGTTCTTGTACAAA+AGG 0.473460 4_1:+61701533 Msa0562040:CDS
CACTGGCACCATATTCAGTT+GGG 0.488962 4_1:+61701430 Msa0562040:CDS
CTTACATTTCGTGTTGGTGT+TGG 0.498679 4_1:+61702051 Msa0562040:CDS
TCAAGAGGAGCTGGTTGTAA+AGG 0.503208 4_1:+61702656 Msa0562040:CDS
TAGTAGTAATATGGATATTG+TGG 0.506441 4_1:-61701350 None:intergenic
CAAGTACCTGTAAGCATAGG+AGG 0.508846 4_1:-61702506 None:intergenic
AAATGTAATAAATTCACAGC+TGG 0.508953 4_1:-61703794 None:intergenic
TAGCACCAACCGAAGACAAA+AGG 0.511216 4_1:-61702809 None:intergenic
CCGATCTCCAAGGAAATTCA+AGG 0.511682 4_1:-61703708 None:intergenic
GGATATGGCTCAAGAGGAGC+TGG 0.513862 4_1:+61702647 Msa0562040:CDS
TGTGATAAAATTGTAGGCAC+TGG 0.515703 4_1:+61701702 Msa0562040:CDS
TCATATAGGTTATCAAAGGA+TGG 0.519848 4_1:+61702453 Msa0562040:intron
GTTATCAAAGGATGGGATGT+AGG 0.520177 4_1:+61702461 Msa0562040:CDS
TACTTCAGCTGCTGTTGCAG+TGG 0.527205 4_1:-61701637 None:intergenic
TTGAACAGAACATGTTGTTA+CGG 0.529455 4_1:-61701499 None:intergenic
TTGGGTCCCTTTGGGAAATG+TGG 0.538678 4_1:+61701300 None:intergenic
TAATGTTAGGCACATTATGT+GGG 0.541025 4_1:+61701976 Msa0562040:intron
GGTTCTTATAAGGATTATGT+TGG 0.541339 4_1:+61702786 Msa0562040:CDS
TTGTTGCCACATTTCCCAAA+GGG 0.542200 4_1:-61701306 None:intergenic
TCACTGGCACCATATTCAGT+TGG 0.542595 4_1:+61701429 Msa0562040:CDS
GGAAGGTAATTTGACTGCCA+TGG 0.544498 4_1:-61703687 None:intergenic
CTGGTCCTCAGGCTGTTAAG+GGG 0.549286 4_1:+61701721 Msa0562040:CDS
AACTTCCACATTGGATGACA+TGG 0.550172 4_1:+61703894 Msa0562040:three_prime_UTR
ACACCAACACGAAATGTAAG+TGG 0.551590 4_1:-61702048 None:intergenic
CAAGAACTGGTGGTTGCTGT+TGG 0.563530 4_1:-61701524 None:intergenic
GAATTTGGATATGGCTCAAG+AGG 0.566038 4_1:+61702641 Msa0562040:CDS
TTCAGTGGAAATGAGTTCAC+TGG 0.566498 4_1:+61701413 Msa0562040:CDS
ATGTAGAAGGCCAAAACTCA+AGG 0.566539 4_1:-61701592 None:intergenic
ATTTCGTGTTGGTGTTGGAG+AGG 0.570960 4_1:+61702056 Msa0562040:CDS
TTTGGGGCTGCAAGGAGGTG+AGG 0.573241 4_1:-61701458 None:intergenic
AAGCCACTTACATTTCGTGT+TGG 0.577359 4_1:+61702045 Msa0562040:CDS
CATATAGGTTATCAAAGGAT+GGG 0.577493 4_1:+61702454 Msa0562040:intron
TATGTGGGGAGATTGGAGAA+TGG 0.578143 4_1:+61701991 Msa0562040:CDS
AATGTGGCAACAAGATGTCA+TGG 0.580208 4_1:+61701316 Msa0562040:exon
TGGCCATATCCTGAATTCAG+TGG 0.581229 4_1:+61701398 Msa0562040:CDS
CTTGTTGCCACATTTCCCAA+AGG 0.582696 4_1:-61701307 None:intergenic
ACTTCAGCTGCTGTTGCAGT+GGG 0.595485 4_1:-61701636 None:intergenic
TCACAATAGGAAAGGCCTGA+AGG 0.597137 4_1:-61701684 None:intergenic
TGAATCATATAGGTTATCAA+AGG 0.598952 4_1:+61702449 Msa0562040:intron
AAACAAGTACCTGTAAGCAT+AGG 0.604775 4_1:-61702509 None:intergenic
GTCGAATAAGAGTACCGCAT+CGG 0.605120 4_1:-61703631 None:intergenic
AGAGGAGCTGGTTGTAAAGG+AGG 0.607049 4_1:+61702659 Msa0562040:CDS
AAGCATGATTTACAACTCCA+TGG 0.608035 4_1:+61703670 Msa0562040:CDS
TTCGACAGCAGCTACAACCG+TGG 0.611929 4_1:+61702021 Msa0562040:CDS
AGTTAAATGTAATTAGACTA+CGG 0.612408 4_1:-61704012 None:intergenic
AATAAGAGTACCGCATCGGG+AGG 0.612454 4_1:-61703627 None:intergenic
AGCTGCCCCTTAACAGCCTG+AGG 0.616489 4_1:-61701726 None:intergenic
TCAAACATGTAAATTAAAAG+GGG 0.619453 4_1:-61703753 None:intergenic
ATCATCATCAACTTCCACAT+TGG 0.622278 4_1:+61703885 Msa0562040:three_prime_UTR
GGAGCCACTGTTAATTCACA+TGG 0.627997 4_1:-61701663 None:intergenic
ATGTTGTTACGGAAATCGAA+TGG 0.632964 4_1:-61701488 None:intergenic
TCTCCAAGGAAATTCAAGGA+AGG 0.641691 4_1:-61703704 None:intergenic
AATGTTAGGCACATTATGTG+GGG 0.643650 4_1:+61701977 Msa0562040:intron
TTGAAAAGAAGAGAAGCACT+AGG 0.644359 4_1:+61701564 Msa0562040:CDS
GAGCCATATCCAAATTCTGG+AGG 0.647151 4_1:-61702635 None:intergenic
GAAGGCCAAAACTCAAGGAG+AGG 0.647900 4_1:-61701587 None:intergenic
AATCTCAGTTCCGATCTCCA+AGG 0.648478 4_1:-61703718 None:intergenic
ATGTGTCATTCCTCCCGATG+CGG 0.653625 4_1:+61703617 Msa0562040:CDS
GAAATGTAAGTGGCTTGCCA+CGG 0.655924 4_1:-61702038 None:intergenic
AATAACCATGTCATCCAATG+TGG 0.661712 4_1:-61703899 None:intergenic
AGTTCCATGTGAATTAACAG+TGG 0.710808 4_1:+61701659 Msa0562040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAAAAAATAGTAATAAA+TGG - chr4_1:61701786-61701805 None:intergenic 10.0%
!!! TTATTACTATTTTTTATAGA+AGG + chr4_1:61701787-61701806 Msa0562040:intron 10.0%
!! TATATATGATAAAAGTAAAA+TGG + chr4_1:61701812-61701831 Msa0562040:intron 10.0%
!! TATTAGATATAAATGTTAGT+TGG - chr4_1:61701918-61701937 None:intergenic 15.0%
!!! ATAGTTTTAAATTGATGTTA+CGG + chr4_1:61702095-61702114 Msa0562040:intron 15.0%
!! AAATTATTCATGAATCATAT+AGG + chr4_1:61702439-61702458 Msa0562040:intron 15.0%
!!! GTAAATTCTATTTTGTTTTA+TGG + chr4_1:61702543-61702562 Msa0562040:intron 15.0%
!! TATCAAATTTGATCTTTATA+TGG - chr4_1:61702737-61702756 None:intergenic 15.0%
!!! AGGAAAATGAATAATTTTTA+GGG + chr4_1:61702998-61703017 Msa0562040:intron 15.0%
!! ATCAAACATGTAAATTAAAA+GGG - chr4_1:61703757-61703776 None:intergenic 15.0%
!! TTAGTAAGTTAGTAGTAATA+TGG - chr4_1:61701362-61701381 None:intergenic 20.0%
!! ACTACTAACTTACTAAAAAA+AGG + chr4_1:61701366-61701385 Msa0562040:CDS 20.0%
!! CTACTAACTTACTAAAAAAA+GGG + chr4_1:61701367-61701386 Msa0562040:CDS 20.0%
!! ATTAACTAACTTCATTTCAT+TGG - chr4_1:61701876-61701895 None:intergenic 20.0%
!! TTGACCATTATATTAATGTT+AGG + chr4_1:61701963-61701982 Msa0562040:intron 20.0%
!!! GTAACATCAATTTAAAACTA+TGG - chr4_1:61702096-61702115 None:intergenic 20.0%
!!! TTTTAAATTGCGGTAAATAA+TGG - chr4_1:61702238-61702257 None:intergenic 20.0%
!!! TTTTATTCTTTTCTTACGTT+AGG + chr4_1:61702590-61702609 Msa0562040:intron 20.0%
!!! AAGATCAAATTTGATAACTT+TGG + chr4_1:61702741-61702760 Msa0562040:intron 20.0%
!! TTCAATATACAAAACTTGAT+TGG + chr4_1:61702885-61702904 Msa0562040:intron 20.0%
!! TCAATATACAAAACTTGATT+GGG + chr4_1:61702886-61702905 Msa0562040:intron 20.0%
!!! AAAACTGATTAAATTTGTTG+TGG + chr4_1:61702917-61702936 Msa0562040:intron 20.0%
!!! GAGGAAAATGAATAATTTTT+AGG + chr4_1:61702997-61703016 Msa0562040:intron 20.0%
!!! CAATTTTTTCAAATAATTGC+CGG + chr4_1:61703442-61703461 Msa0562040:intron 20.0%
!! TCAAACATGTAAATTAAAAG+GGG - chr4_1:61703756-61703775 None:intergenic 20.0%
!! CATCAAACATGTAAATTAAA+AGG - chr4_1:61703758-61703777 None:intergenic 20.0%
!!! CTTTTAATTTACATGTTTGA+TGG + chr4_1:61703756-61703775 Msa0562040:three_prime_UTR 20.0%
! TAGTAGTAATATGGATATTG+TGG - chr4_1:61701353-61701372 None:intergenic 25.0%
!! AATCGAATGGTTAAGTTTTT+GGG - chr4_1:61701478-61701497 None:intergenic 25.0%
!! AAATCGAATGGTTAAGTTTT+TGG - chr4_1:61701479-61701498 None:intergenic 25.0%
!! CAATTTTATCACAATAGGAA+AGG - chr4_1:61701695-61701714 None:intergenic 25.0%
! TCCTATTGTGATAAAATTGT+AGG + chr4_1:61701696-61701715 Msa0562040:CDS 25.0%
! TGACAACAAATGACAAAAAA+TGG - chr4_1:61701763-61701782 None:intergenic 25.0%
! TATAATGGTCAAGTTAAACA+CGG - chr4_1:61701955-61701974 None:intergenic 25.0%
! TGTGCCTAACATTAATATAA+TGG - chr4_1:61701970-61701989 None:intergenic 25.0%
!! CCTCAAAATCTTTTATATCA+CGG + chr4_1:61702196-61702215 Msa0562040:intron 25.0%
!!! AGAATCATGGTTTTAAATTG+CGG - chr4_1:61702248-61702267 None:intergenic 25.0%
!!! TAATTTGTTAACATTGAGCA+TGG - chr4_1:61702425-61702444 None:intergenic 25.0%
! TGAATCATATAGGTTATCAA+AGG + chr4_1:61702449-61702468 Msa0562040:intron 25.0%
! AAAATTGGAAGTTCATTATG+AGG + chr4_1:61702978-61702997 Msa0562040:intron 25.0%
! AATAGAGAAATTGTAATCCT+TGG + chr4_1:61703154-61703173 Msa0562040:intron 25.0%
!! TTCTTTAAGAACTTAATCCA+AGG - chr4_1:61703174-61703193 None:intergenic 25.0%
! TGGATTAAGTTCTTAAAGAA+AGG + chr4_1:61703174-61703193 Msa0562040:intron 25.0%
! CACATGTTCTTTATGATTAA+AGG - chr4_1:61703239-61703258 None:intergenic 25.0%
! GTGTTGTGTCAATAATTTAT+AGG + chr4_1:61703491-61703510 Msa0562040:intron 25.0%
! AAATGTAATAAATTCACAGC+TGG - chr4_1:61703797-61703816 None:intergenic 25.0%
! ATCGAATGGTTAAGTTTTTG+GGG - chr4_1:61701477-61701496 None:intergenic 30.0%
TTGAACAGAACATGTTGTTA+CGG - chr4_1:61701502-61701521 None:intergenic 30.0%
GTTGCAATAAAGAATGTAGA+AGG - chr4_1:61701608-61701627 None:intergenic 30.0%
! GCCTACAATTTTATCACAAT+AGG - chr4_1:61701700-61701719 None:intergenic 30.0%
ATAATGGTCAAGTTAAACAC+GGG - chr4_1:61701954-61701973 None:intergenic 30.0%
TTAATGTTAGGCACATTATG+TGG + chr4_1:61701975-61701994 Msa0562040:intron 30.0%
TAATGTTAGGCACATTATGT+GGG + chr4_1:61701976-61701995 Msa0562040:intron 30.0%
! CCGTGATATAAAAGATTTTG+AGG - chr4_1:61702199-61702218 None:intergenic 30.0%
TGATGCTATTGATAGAATCA+TGG - chr4_1:61702261-61702280 None:intergenic 30.0%
TCATATAGGTTATCAAAGGA+TGG + chr4_1:61702453-61702472 Msa0562040:intron 30.0%
CATATAGGTTATCAAAGGAT+GGG + chr4_1:61702454-61702473 Msa0562040:intron 30.0%
! TATTCTTTTCTTACGTTAGG+AGG + chr4_1:61702593-61702612 Msa0562040:intron 30.0%
GACAATGATGGCAAATTAAA+AGG - chr4_1:61702715-61702734 None:intergenic 30.0%
GATCTTTATATGGACAATGA+TGG - chr4_1:61702727-61702746 None:intergenic 30.0%
! TATTTTGCACTTTGTTGAAG+TGG + chr4_1:61702765-61702784 Msa0562040:intron 30.0%
TTGTTGAAGTGGTTCTTATA+AGG + chr4_1:61702776-61702795 Msa0562040:intron 30.0%
GGTTCTTATAAGGATTATGT+TGG + chr4_1:61702786-61702805 Msa0562040:CDS 30.0%
GGCAGAATAAGAAAGAAAAT+TGG + chr4_1:61702963-61702982 Msa0562040:intron 30.0%
AATACTTAACAAGTACATCC+AGG - chr4_1:61703106-61703125 None:intergenic 30.0%
AACCAGGTATAAATTCATCT+TGG - chr4_1:61703584-61703603 None:intergenic 30.0%
GATACACTACCAGTTTAAAA+AGG + chr4_1:61703982-61704001 Msa0562040:three_prime_UTR 30.0%
! GGTGTTAAACCTTTTTAAAC+TGG - chr4_1:61703994-61704013 None:intergenic 30.0%
CTAAAAAAAGGGATGCTTCT+TGG + chr4_1:61701378-61701397 Msa0562040:CDS 35.0%
TTTCCACTGAATTCAGGATA+TGG - chr4_1:61701404-61701423 None:intergenic 35.0%
AACTCATTTCCACTGAATTC+AGG - chr4_1:61701410-61701429 None:intergenic 35.0%
ATGTTGTTACGGAAATCGAA+TGG - chr4_1:61701491-61701510 None:intergenic 35.0%
! TTCTCCTTTTGTACAAGAAC+TGG - chr4_1:61701540-61701559 None:intergenic 35.0%
!! TTGAAAAGAAGAGAAGCACT+AGG + chr4_1:61701564-61701583 Msa0562040:CDS 35.0%
AGTTCCATGTGAATTAACAG+TGG + chr4_1:61701659-61701678 Msa0562040:CDS 35.0%
TGTGATAAAATTGTAGGCAC+TGG + chr4_1:61701702-61701721 Msa0562040:CDS 35.0%
AATGTTAGGCACATTATGTG+GGG + chr4_1:61701977-61701996 Msa0562040:intron 35.0%
AAGCGCAATTTCTACAACAT+TGG - chr4_1:61702150-61702169 None:intergenic 35.0%
! CTCACAAGAGCTTTACATTT+TGG - chr4_1:61702320-61702339 None:intergenic 35.0%
AGCTCTTGTGAGATATTGAT+TGG + chr4_1:61702328-61702347 Msa0562040:intron 35.0%
AAACAAGTACCTGTAAGCAT+AGG - chr4_1:61702512-61702531 None:intergenic 35.0%
!!! TTATGTTGGCCTTTTGTCTT+CGG + chr4_1:61702800-61702819 Msa0562040:CDS 35.0%
AGGATGAAGTAATGGTTACT+TGG + chr4_1:61702844-61702863 Msa0562040:intron 35.0%
TAAGAATGAAGAGAAGGAAG+TGG + chr4_1:61702942-61702961 Msa0562040:intron 35.0%
ATGACCTATCTCTTTAAACC+TGG + chr4_1:61703085-61703104 Msa0562040:intron 35.0%
ACATCCAGGTTTAAAGAGAT+AGG - chr4_1:61703092-61703111 None:intergenic 35.0%
AAGCAAGCAAAGTGTGTTAA+TGG + chr4_1:61703300-61703319 Msa0562040:intron 35.0%
TGATATGGATCTGTCAAAAC+CGG - chr4_1:61703464-61703483 None:intergenic 35.0%
AGCCAAGATGAATTTATACC+TGG + chr4_1:61703579-61703598 Msa0562040:intron 35.0%
!!! TTTATACCTGGTTTTGATGC+AGG + chr4_1:61703591-61703610 Msa0562040:intron 35.0%
AAGCATGATTTACAACTCCA+TGG + chr4_1:61703670-61703689 Msa0562040:CDS 35.0%
TTACCTTCCTTGAATTTCCT+TGG + chr4_1:61703701-61703720 Msa0562040:CDS 35.0%
! GCTCTAGATCACATTGATAA+AGG + chr4_1:61703819-61703838 Msa0562040:three_prime_UTR 35.0%
ATCATCATCAACTTCCACAT+TGG + chr4_1:61703885-61703904 Msa0562040:three_prime_UTR 35.0%
AATAACCATGTCATCCAATG+TGG - chr4_1:61703902-61703921 None:intergenic 35.0%
TTGTTGCCACATTTCCCAAA+GGG - chr4_1:61701309-61701328 None:intergenic 40.0%
AATGTGGCAACAAGATGTCA+TGG + chr4_1:61701316-61701335 Msa0562040:exon 40.0%
TTCAGTGGAAATGAGTTCAC+TGG + chr4_1:61701413-61701432 Msa0562040:CDS 40.0%
ACCACCAGTTCTTGTACAAA+AGG + chr4_1:61701533-61701552 Msa0562040:CDS 40.0%
! TCCTTTTGTACAAGAACTGG+TGG - chr4_1:61701537-61701556 None:intergenic 40.0%
ATGTAGAAGGCCAAAACTCA+AGG - chr4_1:61701595-61701614 None:intergenic 40.0%
TGTTAAGGGGCAGCTTATTA+AGG + chr4_1:61701734-61701753 Msa0562040:CDS 40.0%
CAAGTTAAACACGGGACAAA+GGG - chr4_1:61701946-61701965 None:intergenic 40.0%
TCAAGTTAAACACGGGACAA+AGG - chr4_1:61701947-61701966 None:intergenic 40.0%
AAGCCACTTACATTTCGTGT+TGG + chr4_1:61702045-61702064 Msa0562040:CDS 40.0%
ACACCAACACGAAATGTAAG+TGG - chr4_1:61702051-61702070 None:intergenic 40.0%
! CTTACATTTCGTGTTGGTGT+TGG + chr4_1:61702051-61702070 Msa0562040:CDS 40.0%
TATAGACCAGCGAGAAAATG+TGG + chr4_1:61702124-61702143 Msa0562040:intron 40.0%
TAGAAATTGCGCTTGTGACA+CGG + chr4_1:61702156-61702175 Msa0562040:intron 40.0%
GAGCATGGCATATATATCAG+TGG - chr4_1:61702410-61702429 None:intergenic 40.0%
GTTATCAAAGGATGGGATGT+AGG + chr4_1:61702461-61702480 Msa0562040:CDS 40.0%
!! GTAGGCATTTTAGGAGATGA+TGG + chr4_1:61702479-61702498 Msa0562040:CDS 40.0%
TTGAAGCTTCCTCCAGAATT+TGG + chr4_1:61702626-61702645 Msa0562040:CDS 40.0%
CTTCCTCCAGAATTTGGATA+TGG + chr4_1:61702632-61702651 Msa0562040:CDS 40.0%
CTTGAGCCATATCCAAATTC+TGG - chr4_1:61702641-61702660 None:intergenic 40.0%
GAATTTGGATATGGCTCAAG+AGG + chr4_1:61702641-61702660 Msa0562040:CDS 40.0%
!! GTCACTCTAGGATGAAGTAA+TGG + chr4_1:61702836-61702855 Msa0562040:intron 40.0%
GTGGCATAAGAATGAAGAGA+AGG + chr4_1:61702936-61702955 Msa0562040:intron 40.0%
CATGTGTGTAAGTGTCATGT+TGG - chr4_1:61703406-61703425 None:intergenic 40.0%
TCTCCAAGGAAATTCAAGGA+AGG - chr4_1:61703707-61703726 None:intergenic 40.0%
CCTTGAATTTCCTTGGAGAT+CGG + chr4_1:61703708-61703727 Msa0562040:CDS 40.0%
AACTTCCACATTGGATGACA+TGG + chr4_1:61703894-61703913 Msa0562040:three_prime_UTR 40.0%
CTTGTTGCCACATTTCCCAA+AGG - chr4_1:61701310-61701329 None:intergenic 45.0%
TGGCCATATCCTGAATTCAG+TGG + chr4_1:61701398-61701417 Msa0562040:CDS 45.0%
TCACTGGCACCATATTCAGT+TGG + chr4_1:61701429-61701448 Msa0562040:CDS 45.0%
CACTGGCACCATATTCAGTT+GGG + chr4_1:61701430-61701449 Msa0562040:CDS 45.0%
AGGCAAGTCCCAACTGAATA+TGG - chr4_1:61701441-61701460 None:intergenic 45.0%
!!! GTTAAGTTTTTGGGGCTGCA+AGG - chr4_1:61701469-61701488 None:intergenic 45.0%
GCTGTTGCAGTGGGTATTAT+TGG - chr4_1:61701630-61701649 None:intergenic 45.0%
GGAGCCACTGTTAATTCACA+TGG - chr4_1:61701666-61701685 None:intergenic 45.0%
GAATTAACAGTGGCTCCTTC+AGG + chr4_1:61701669-61701688 Msa0562040:CDS 45.0%
TCACAATAGGAAAGGCCTGA+AGG - chr4_1:61701687-61701706 None:intergenic 45.0%
TATGTGGGGAGATTGGAGAA+TGG + chr4_1:61701991-61702010 Msa0562040:CDS 45.0%
! GAAATGTAAGTGGCTTGCCA+CGG - chr4_1:61702041-61702060 None:intergenic 45.0%
!! ATTTCGTGTTGGTGTTGGAG+AGG + chr4_1:61702056-61702075 Msa0562040:CDS 45.0%
! GGATGGGATGTAGGCATTTT+AGG + chr4_1:61702470-61702489 Msa0562040:CDS 45.0%
GGAATTCCTCCTATGCTTAC+AGG + chr4_1:61702500-61702519 Msa0562040:CDS 45.0%
CAAGTACCTGTAAGCATAGG+AGG - chr4_1:61702509-61702528 None:intergenic 45.0%
GAGCCATATCCAAATTCTGG+AGG - chr4_1:61702638-61702657 None:intergenic 45.0%
TCAAGAGGAGCTGGTTGTAA+AGG + chr4_1:61702656-61702675 Msa0562040:CDS 45.0%
TAGCACCAACCGAAGACAAA+AGG - chr4_1:61702812-61702831 None:intergenic 45.0%
!! TGTCTTCGGTTGGTGCTAAT+AGG + chr4_1:61702814-61702833 Msa0562040:CDS 45.0%
! TGGTGCTAATAGGTCACTCT+AGG + chr4_1:61702824-61702843 Msa0562040:intron 45.0%
CATGTCAAGTAGCTACTAGC+TGG - chr4_1:61703068-61703087 None:intergenic 45.0%
AAGGATGTGCAGTGTCTACA+TGG - chr4_1:61703220-61703239 None:intergenic 45.0%
CACAACACACGACACTGATA+TGG - chr4_1:61703479-61703498 None:intergenic 45.0%
CATGAACCTGCATCAAAACC+AGG - chr4_1:61703600-61703619 None:intergenic 45.0%
!! TCGAATAAGAGTACCGCATC+GGG - chr4_1:61703633-61703652 None:intergenic 45.0%
!! GTCGAATAAGAGTACCGCAT+CGG - chr4_1:61703634-61703653 None:intergenic 45.0%
GGAAGGTAATTTGACTGCCA+TGG - chr4_1:61703690-61703709 None:intergenic 45.0%
CCGATCTCCAAGGAAATTCA+AGG - chr4_1:61703711-61703730 None:intergenic 45.0%
AATCTCAGTTCCGATCTCCA+AGG - chr4_1:61703721-61703740 None:intergenic 45.0%
!!! AAGTTTTTGGGGCTGCAAGG+AGG - chr4_1:61701466-61701485 None:intergenic 50.0%
CAAGAACTGGTGGTTGCTGT+TGG - chr4_1:61701527-61701546 None:intergenic 50.0%
! CTAGGCCTCTCCTTGAGTTT+TGG + chr4_1:61701582-61701601 Msa0562040:CDS 50.0%
GAAGGCCAAAACTCAAGGAG+AGG - chr4_1:61701590-61701609 None:intergenic 50.0%
ACTTCAGCTGCTGTTGCAGT+GGG - chr4_1:61701639-61701658 None:intergenic 50.0%
TACTTCAGCTGCTGTTGCAG+TGG - chr4_1:61701640-61701659 None:intergenic 50.0%
!! AATTGTAGGCACTGGTCCTC+AGG + chr4_1:61701710-61701729 Msa0562040:CDS 50.0%
ACTGGTCCTCAGGCTGTTAA+GGG + chr4_1:61701720-61701739 Msa0562040:CDS 50.0%
GGCACATTATGTGGGGAGAT+TGG + chr4_1:61701984-61702003 Msa0562040:intron 50.0%
! CATTGGCCACATTTTCTCGC+TGG - chr4_1:61702133-61702152 None:intergenic 50.0%
AGAGGAGCTGGTTGTAAAGG+AGG + chr4_1:61702659-61702678 Msa0562040:CDS 50.0%
!!! GTTGGCCTTTTGTCTTCGGT+TGG + chr4_1:61702804-61702823 Msa0562040:CDS 50.0%
! ATGTGTCATTCCTCCCGATG+CGG + chr4_1:61703617-61703636 Msa0562040:CDS 50.0%
!! AATAAGAGTACCGCATCGGG+AGG - chr4_1:61703630-61703649 None:intergenic 50.0%
CACTGGTCCTCAGGCTGTTA+AGG + chr4_1:61701719-61701738 Msa0562040:CDS 55.0%
CTGGTCCTCAGGCTGTTAAG+GGG + chr4_1:61701721-61701740 Msa0562040:CDS 55.0%
TTCGACAGCAGCTACAACCG+TGG + chr4_1:61702021-61702040 Msa0562040:CDS 55.0%
TTGCGCTTGTGACACGGTTC+TGG + chr4_1:61702162-61702181 Msa0562040:intron 55.0%
GGATATGGCTCAAGAGGAGC+TGG + chr4_1:61702647-61702666 Msa0562040:CDS 55.0%
! TTTGGGGCTGCAAGGAGGTG+AGG - chr4_1:61701461-61701480 None:intergenic 60.0%
AGCTGCCCCTTAACAGCCTG+AGG - chr4_1:61701729-61701748 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 61701301 61704020 61701301 ID=Msa0562040;Name=Msa0562040
chr4_1 mRNA 61701301 61704020 61701301 ID=Msa0562040-mRNA-1;Parent=Msa0562040;Name=Msa0562040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=29|0.6|0.66|0.83|1|1|6|284|275
chr4_1 exon 61701301 61701755 61701301 ID=Msa0562040-mRNA-1:exon:19454;Parent=Msa0562040-mRNA-1
chr4_1 exon 61701985 61702077 61701985 ID=Msa0562040-mRNA-1:exon:19455;Parent=Msa0562040-mRNA-1
chr4_1 exon 61702461 61702521 61702461 ID=Msa0562040-mRNA-1:exon:19456;Parent=Msa0562040-mRNA-1
chr4_1 exon 61702612 61702684 61702612 ID=Msa0562040-mRNA-1:exon:19457;Parent=Msa0562040-mRNA-1
chr4_1 exon 61702785 61702835 61702785 ID=Msa0562040-mRNA-1:exon:19458;Parent=Msa0562040-mRNA-1
chr4_1 exon 61703613 61704020 61703613 ID=Msa0562040-mRNA-1:exon:19459;Parent=Msa0562040-mRNA-1
chr4_1 five_prime_UTR 61701301 61701329 61701301 ID=Msa0562040-mRNA-1:five_prime_utr;Parent=Msa0562040-mRNA-1
chr4_1 CDS 61701330 61701755 61701330 ID=Msa0562040-mRNA-1:cds;Parent=Msa0562040-mRNA-1
chr4_1 CDS 61701985 61702077 61701985 ID=Msa0562040-mRNA-1:cds;Parent=Msa0562040-mRNA-1
chr4_1 CDS 61702461 61702521 61702461 ID=Msa0562040-mRNA-1:cds;Parent=Msa0562040-mRNA-1
chr4_1 CDS 61702612 61702684 61702612 ID=Msa0562040-mRNA-1:cds;Parent=Msa0562040-mRNA-1
chr4_1 CDS 61702785 61702835 61702785 ID=Msa0562040-mRNA-1:cds;Parent=Msa0562040-mRNA-1
chr4_1 CDS 61703613 61703736 61703613 ID=Msa0562040-mRNA-1:cds;Parent=Msa0562040-mRNA-1
chr4_1 three_prime_UTR 61703737 61704020 61703737 ID=Msa0562040-mRNA-1:three_prime_utr;Parent=Msa0562040-mRNA-1
Gene Sequence

>Msa0562040

ATGTCATGGAACAATATGAACCACAATATCCATATTACTACTAACTTACTAAAAAAAGGGATGCTTCTTGGCCATATCCTGAATTCAGTGGAAATGAGTTCACTGGCACCATATTCAGTTGGGACTTGCCTCACCTCCTTGCAGCCCCAAAAACTTAACCATTCGATTTCCGTAACAACATGTTCTGTTCAAGTCCAACAGCAACCACCAGTTCTTGTACAAAAGGAGAATCAATTGAAAAGAAGAGAAGCACTAGGCCTCTCCTTGAGTTTTGGCCTTCTACATTCTTTATTGCAACCAATAATACCCACTGCAACAGCAGCTGAAGTAGTTCCATGTGAATTAACAGTGGCTCCTTCAGGCCTTTCCTATTGTGATAAAATTGTAGGCACTGGTCCTCAGGCTGTTAAGGGGCAGCTTATTAAGGCACATTATGTGGGGAGATTGGAGAATGGAAAAGTTTTCGACAGCAGCTACAACCGTGGCAAGCCACTTACATTTCGTGTTGGTGTTGGAGAGGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGATGATGGAATTCCTCCTATGCTTACAGGAGGTAAACGTACATTGAAGCTTCCTCCAGAATTTGGATATGGCTCAAGAGGAGCTGGTTGTAAAGGAGGCAATGGTTCTTATAAGGATTATGTTGGCCTTTTGTCTTCGGTTGGTGCTAATAGGTTCATGTGTCATTCCTCCCGATGCGGTACTCTTATTCGACGTAGAGTTTGTCAGCAAAGCATGATTTACAACTCCATGGCAGTCAAATTACCTTCCTTGAATTTCCTTGGAGATCGGAACTGA

Protein sequence

>Msa0562040

MSWNNMNHNIHITTNLLKKGMLLGHILNSVEMSSLAPYSVGTCLTSLQPQKLNHSISVTTCSVQVQQQPPVLVQKENQLKRREALGLSLSFGLLHSLLQPIIPTATAAEVVPCELTVAPSGLSYCDKIVGTGPQAVKGQLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKGWDVGILGDDGIPPMLTGGKRTLKLPPEFGYGSRGAGCKGGNGSYKDYVGLLSSVGANRFMCHSSRCGTLIRRRVCQQSMIYNSMAVKLPSLNFLGDRN*