AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236090 MtrunA17_Chr1g0213401 87.339 387 9 1 1 387 1 347 0.0 647
Msa1236090 MtrunA17_Chr2g0278051 27.184 206 116 7 30 230 57 233 7.23e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236090 AT1G51110.1 65.833 360 117 2 31 384 48 407 7.74e-173 488

Find 111 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCAGAATTCTTATTTA+AGG 0.074360 8_2:-14562876 None:intergenic
TTTGGATATCCCCTGGAATT+TGG 0.199847 8_2:+14563959 Msa1236090:CDS
ACTGGATATGGAACTTTAAA+TGG 0.214190 8_2:-14562420 None:intergenic
TCCAAATGGGCCACCAATTA+TGG 0.218507 8_2:-14563942 None:intergenic
ATTTCCTTAAATAAGAATTC+TGG 0.253516 8_2:+14562872 Msa1236090:CDS
CAGCTCTGTCAAACCTAAAA+AGG 0.280928 8_2:-14562377 None:intergenic
AATTCTCGCTTCGTGTCTGC+TGG 0.283011 8_2:+14561051 Msa1236090:CDS
TCATCTCCGAGTAGCTTAAA+TGG 0.283845 8_2:-14562444 None:intergenic
AGCTTAAATGGAACTGGATA+TGG 0.306171 8_2:-14562432 None:intergenic
TCGTATCTCGAGAGGGAATA+AGG 0.306326 8_2:+14562515 Msa1236090:CDS
GCCATAATTGGTGGCCCATT+TGG 0.313713 8_2:+14563941 Msa1236090:CDS
TGAATGGGTGATGCTGTTCC+AGG 0.324887 8_2:-14561475 None:intergenic
ATGGATGATGCAGCCATAAT+TGG 0.328954 8_2:+14563929 Msa1236090:CDS
TTCAAGTCCTAGAACGTATA+GGG 0.331993 8_2:+14561288 Msa1236090:CDS
TGAACTTCTTGCCAAATTCC+AGG 0.338221 8_2:-14563970 None:intergenic
CACTCGCCCTCTTCTAGTTC+TGG 0.346170 8_2:-14562905 None:intergenic
AGGGCGAGTGGCAGATGATA+TGG 0.354825 8_2:+14562918 Msa1236090:CDS
ATCAGAAAATGACACAATAT+TGG 0.368308 8_2:-14561766 None:intergenic
TCTTTCAGAGAACATTTGTT+GGG 0.373540 8_2:+14561685 Msa1236090:intron
TTTCCTTAAATAAGAATTCT+GGG 0.380530 8_2:+14562873 Msa1236090:CDS
TGGAACAGCATCACCCATTC+AGG 0.383631 8_2:+14561477 Msa1236090:CDS
CCGAGTAGCTTAAATGGAAC+TGG 0.390540 8_2:-14562438 None:intergenic
GGGCTGAAGTTCTCCATGTC+TGG 0.404879 8_2:+14563298 Msa1236090:CDS
TTACAGATTGTTGGGAAGAA+TGG 0.408577 8_2:+14563244 Msa1236090:intron
AAGCGAGAATTTGAGGGATT+GGG 0.409134 8_2:-14561039 None:intergenic
GAAGCGAGAATTTGAGGGAT+TGG 0.409696 8_2:-14561040 None:intergenic
CTCTTTCAGAGAACATTTGT+TGG 0.410841 8_2:+14561684 Msa1236090:intron
AATAATAATAACAACCTGAA+TGG 0.411588 8_2:-14561491 None:intergenic
AATGAGTGTTACAGATTGTT+GGG 0.412973 8_2:+14563236 Msa1236090:intron
ATTCAAGTCCTAGAACGTAT+AGG 0.419239 8_2:+14561287 Msa1236090:CDS
TGGAAGAAATTTGAAAGAAA+AGG 0.420561 8_2:-14562400 None:intergenic
GACAAATTCAAGTTTGATTG+AGG 0.420832 8_2:+14561423 Msa1236090:intron
ACCACATACTTGTCGCATTC+AGG 0.425272 8_2:+14562486 Msa1236090:CDS
CAATGAGTGTTACAGATTGT+TGG 0.428126 8_2:+14563235 Msa1236090:intron
TACGTGGTTAATATCTTGCT+TGG 0.429109 8_2:+14563277 Msa1236090:CDS
TCACTCATCCAAGCTCTTGT+TGG 0.430914 8_2:+14561123 Msa1236090:CDS
ATTGTAACCTCGTACACTTT+GGG 0.434349 8_2:-14563908 None:intergenic
CATTGTAACCTCGTACACTT+TGG 0.437989 8_2:-14563909 None:intergenic
AAGAAGAACGTCCACGTCCT+TGG 0.440262 8_2:-14561149 None:intergenic
TTATTAACAGCAATTTCATC+GGG 0.446100 8_2:+14562735 Msa1236090:CDS
AAATAATTTGATTGTCTCCT+CGG 0.447447 8_2:-14564146 None:intergenic
ATTTGGCAAGAAGTTCATCT+TGG 0.458400 8_2:+14563976 Msa1236090:CDS
GTTGTGAATGTAAACAATAT+AGG 0.473230 8_2:+14560979 Msa1236090:CDS
CAAGTTTGATTGAGGGTCGC+TGG 0.473813 8_2:+14561431 Msa1236090:CDS
TTCCTTTGCAGATTCAATGA+TGG 0.476623 8_2:+14564108 Msa1236090:intron
AGACACGAAGCGAGAATTTG+AGG 0.477785 8_2:-14561046 None:intergenic
GATATTGTGTGATGAATGAT+TGG 0.478489 8_2:+14560840 None:intergenic
AATTCCAGGGGATATCCAAA+TGG 0.479222 8_2:-14563956 None:intergenic
ACAAATTCAAGTTTGATTGA+GGG 0.481218 8_2:+14561424 Msa1236090:CDS
TTTAGACTGTGACGGATAGT+TGG 0.481678 8_2:+14563105 Msa1236090:intron
CCAGTTCCATTTAAGCTACT+CGG 0.481795 8_2:+14562438 Msa1236090:CDS
ATAATAATAACAACCTGAAT+GGG 0.485224 8_2:-14561490 None:intergenic
CAAGCTCTTGTTGGCATCCA+AGG 0.485345 8_2:+14561132 Msa1236090:CDS
TGGCCCATTTGGATATCCCC+TGG 0.490686 8_2:+14563952 Msa1236090:CDS
GACAGACATAAACATAATCT+TGG 0.490695 8_2:+14560872 Msa1236090:five_prime_UTR
GTTATTAACAGCAATTTCAT+CGG 0.491170 8_2:+14562734 Msa1236090:CDS
ACGTGGTTAATATCTTGCTT+GGG 0.492417 8_2:+14563278 Msa1236090:CDS
GACACGAAGCGAGAATTTGA+GGG 0.500687 8_2:-14561045 None:intergenic
CTTGGATGCCAACAAGAGCT+TGG 0.505511 8_2:-14561131 None:intergenic
ATTCTCGCTTCGTGTCTGCT+GGG 0.506359 8_2:+14561052 Msa1236090:CDS
TTGCAGATTCAATGATGGTA+AGG 0.516539 8_2:+14564113 Msa1236090:intron
TATGTTATTATGTGTGTGGC+TGG 0.516556 8_2:-14560897 None:intergenic
TGTCTGTCTGTCTGTAACAA+TGG 0.522873 8_2:+14560942 Msa1236090:exon
CTTTCAGAGAACATTTGTTG+GGG 0.528025 8_2:+14561686 Msa1236090:intron
AAACAGGCAGCAGCATCCAT+TGG 0.529399 8_2:+14562339 Msa1236090:intron
CTGCTTTCCCATCAGACCAT+TGG 0.532262 8_2:-14563141 None:intergenic
GAACTTCTTGCCAAATTCCA+GGG 0.534199 8_2:-14563969 None:intergenic
AGAGAGACGTTGAGTTGCTG+TGG 0.535610 8_2:-14561174 None:intergenic
ATTCCAGGGGATATCCAAAT+GGG 0.537199 8_2:-14563955 None:intergenic
CTGTTATGTTATTATGTGTG+TGG 0.539291 8_2:-14560901 None:intergenic
CAATGGTCTGATGGGAAAGC+AGG 0.540494 8_2:+14563142 Msa1236090:CDS
GAATGCTGCCAATGGTCTGA+TGG 0.545354 8_2:+14563133 Msa1236090:CDS
CTAGCTAAATACAACATGGA+AGG 0.546362 8_2:+14564226 Msa1236090:three_prime_UTR
TTATTCTCTTTAGACTGTGA+CGG 0.547393 8_2:+14563097 Msa1236090:intron
GGAAACCTTCGTATCTCGAG+AGG 0.557760 8_2:+14562507 Msa1236090:CDS
CTTGTTGGCATCCAAGGACG+TGG 0.563106 8_2:+14561138 Msa1236090:CDS
TTGCTTCTGCAGCACAAATG+TGG 0.568163 8_2:-14562694 None:intergenic
AGAAGATCCAGAACTAGAAG+AGG 0.571950 8_2:+14562898 Msa1236090:CDS
TAAATACAACATGGAAGGGA+AGG 0.574465 8_2:+14564231 Msa1236090:three_prime_UTR
CTCAACTTTGAGCTCACCGA+TGG 0.576956 8_2:-14561790 None:intergenic
GCAGCAGCATCCATTGGAGA+TGG 0.578573 8_2:+14562345 Msa1236090:CDS
GCAGATGATATGGAATTCAC+AGG 0.579711 8_2:+14562928 Msa1236090:CDS
TGATGAATGATTGGCAAGAG+TGG 0.586726 8_2:+14560849 None:intergenic
TCCTGAATGCGACAAGTATG+TGG 0.590251 8_2:-14562487 None:intergenic
CAGAACTAGAAGAGGGCGAG+TGG 0.592200 8_2:+14562906 Msa1236090:CDS
CTACTCGGAGATGAAGCAAA+GGG 0.602582 8_2:+14562453 Msa1236090:CDS
TAGCTAAATACAACATGGAA+GGG 0.604145 8_2:+14564227 Msa1236090:three_prime_UTR
CAAAGTGTACGAGGTTACAA+TGG 0.607400 8_2:+14563910 Msa1236090:CDS
TGGTTAGAGAATGCTGCCAA+TGG 0.607813 8_2:+14563125 Msa1236090:CDS
TCGGAGATGAAGCAAAGGGT+TGG 0.610464 8_2:+14562457 Msa1236090:CDS
TCAAGTCCTAGAACGTATAG+GGG 0.612364 8_2:+14561289 Msa1236090:CDS
AATGCTGCCAATGGTCTGAT+GGG 0.614840 8_2:+14563134 Msa1236090:CDS
GACACAATATTGGTTACGCG+TGG 0.616061 8_2:-14561756 None:intergenic
TTCCTTAAATAAGAATTCTG+GGG 0.617362 8_2:+14562874 Msa1236090:CDS
ATTTAGCTAGCAATGATATG+TGG 0.624856 8_2:-14564213 None:intergenic
TATTCCCTCTCGAGATACGA+AGG 0.631516 8_2:-14562512 None:intergenic
GCTACTCGGAGATGAAGCAA+AGG 0.632918 8_2:+14562452 Msa1236090:CDS
CATCGGTGAGCTCAAAGTTG+AGG 0.633284 8_2:+14561791 Msa1236090:CDS
GATGATGCAGCCATAATTGG+TGG 0.633822 8_2:+14563932 Msa1236090:CDS
GAAGATCCAGAACTAGAAGA+GGG 0.640333 8_2:+14562899 Msa1236090:CDS
AACTTCTTGCCAAATTCCAG+GGG 0.647151 8_2:-14563968 None:intergenic
GATGAATGATTGGCAAGAGT+GGG 0.652728 8_2:+14560850 None:intergenic
ATTAACAGCAATTTCATCGG+GGG 0.654374 8_2:+14562737 Msa1236090:CDS
GAAACCTTCGTATCTCGAGA+GGG 0.664581 8_2:+14562508 Msa1236090:CDS
AAGTAGGCCCAAAGTGTACG+AGG 0.669717 8_2:+14563901 Msa1236090:CDS
ATTGCTAGCTAAATACAACA+TGG 0.692869 8_2:+14564222 Msa1236090:three_prime_UTR
TATTAACAGCAATTTCATCG+GGG 0.693361 8_2:+14562736 Msa1236090:CDS
CAAGTCCTAGAACGTATAGG+GGG 0.705630 8_2:+14561290 Msa1236090:CDS
GGTAAGGTCAGAATTAGCCG+AGG 0.716488 8_2:+14564129 Msa1236090:CDS
GAATGGACAAATAAAGTACG+TGG 0.718510 8_2:+14563261 Msa1236090:CDS
ATACGCGCACAAATGCATAG+TGG 0.749193 8_2:+14564175 Msa1236090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAAGTTAATTTTTTTA+GGG + chr8_2:14563004-14563023 Msa1236090:intron 10.0%
!!! TTTTTTTCAATAAACATAAC+TGG + chr8_2:14562790-14562809 Msa1236090:intron 15.0%
!! AGAAAAACAAAATTATTAGT+TGG - chr8_2:14562983-14563002 None:intergenic 15.0%
!!! CATTTGAAGTTAATTTTTTT+AGG + chr8_2:14563003-14563022 Msa1236090:intron 15.0%
!!! TATTTTAACCTTTTTTTTGT+TGG + chr8_2:14564374-14564393 Msa1236090:three_prime_UTR 15.0%
!! ATAATAATAACAACCTGAAT+GGG - chr8_2:14561493-14561512 None:intergenic 20.0%
!! AATAATAATAACAACCTGAA+TGG - chr8_2:14561494-14561513 None:intergenic 20.0%
!!! TTTTTTTAGTGTATTTCAAG+AGG + chr8_2:14561713-14561732 Msa1236090:CDS 20.0%
!! TAATACTAAGTAACTACAAT+TGG + chr8_2:14561814-14561833 Msa1236090:intron 20.0%
!!! AGTAAGTTTTTTAGTTTAAG+AGG + chr8_2:14561926-14561945 Msa1236090:intron 20.0%
!!! CTATTAACAAATTTTTGAAG+AGG - chr8_2:14562003-14562022 None:intergenic 20.0%
!! TATTATGACGATGTTTATAT+TGG - chr8_2:14562554-14562573 None:intergenic 20.0%
!! ATTTCCTTAAATAAGAATTC+TGG + chr8_2:14562872-14562891 Msa1236090:CDS 20.0%
!! TTTCCTTAAATAAGAATTCT+GGG + chr8_2:14562873-14562892 Msa1236090:CDS 20.0%
!! ATGTAAACAATTATCTTACA+AGG + chr8_2:14563050-14563069 Msa1236090:intron 20.0%
!! TCATATTTATTGTGTTTGTA+AGG - chr8_2:14563377-14563396 None:intergenic 20.0%
!! TACAAACACAATAAATATGA+AGG + chr8_2:14563377-14563396 Msa1236090:intron 20.0%
!! TATATTATACGAATGCTTTA+TGG + chr8_2:14563511-14563530 Msa1236090:intron 20.0%
!! TATAGGTTATAAAACAAAGT+TGG + chr8_2:14563734-14563753 Msa1236090:intron 20.0%
! GTTGTGAATGTAAACAATAT+AGG + chr8_2:14560979-14560998 Msa1236090:CDS 25.0%
! AAAGAGAAGAGAAAATAGAT+TGG - chr8_2:14561393-14561412 None:intergenic 25.0%
!! ACAAATTCAAGTTTGATTGA+GGG + chr8_2:14561424-14561443 Msa1236090:CDS 25.0%
! ATCAGAAAATGACACAATAT+TGG - chr8_2:14561769-14561788 None:intergenic 25.0%
! AATTATGCCACATAATTCTA+AGG + chr8_2:14561970-14561989 Msa1236090:intron 25.0%
! AGTTAATATAGATAGCTTTC+TGG + chr8_2:14562076-14562095 Msa1236090:intron 25.0%
! TGAACAGCTATATGATATAA+TGG - chr8_2:14562165-14562184 None:intergenic 25.0%
!! ATGGAAAAAGAATCCTTTTT+AGG + chr8_2:14562364-14562383 Msa1236090:CDS 25.0%
! TGGAAGAAATTTGAAAGAAA+AGG - chr8_2:14562403-14562422 None:intergenic 25.0%
! GTTATTAACAGCAATTTCAT+CGG + chr8_2:14562734-14562753 Msa1236090:CDS 25.0%
! TTATTAACAGCAATTTCATC+GGG + chr8_2:14562735-14562754 Msa1236090:CDS 25.0%
! TTCCTTAAATAAGAATTCTG+GGG + chr8_2:14562874-14562893 Msa1236090:CDS 25.0%
! CATTAGCAAACTTTAAACAA+TGG - chr8_2:14563341-14563360 None:intergenic 25.0%
!!! TTTAAAGTTTGCTAATGTTC+AGG + chr8_2:14563344-14563363 Msa1236090:intron 25.0%
!!! TTAAAGTTTGCTAATGTTCA+GGG + chr8_2:14563345-14563364 Msa1236090:intron 25.0%
!!! AGCTTAAATATTTTAGAGCA+TGG + chr8_2:14563697-14563716 Msa1236090:intron 25.0%
!!! AATATTTTAGAGCATGGTTA+AGG + chr8_2:14563703-14563722 Msa1236090:intron 25.0%
! TGGTTAAGGTTATAAAGTAT+AGG + chr8_2:14563717-14563736 Msa1236090:intron 25.0%
!!! GAAAATGGTAATTGATTTGA+AGG - chr8_2:14563764-14563783 None:intergenic 25.0%
!! TTTTACTTGACAGAAAAAGT+AGG + chr8_2:14563885-14563904 Msa1236090:intron 25.0%
!! AAATAGTAGATTTTGTATGC+TGG + chr8_2:14564066-14564085 Msa1236090:intron 25.0%
! AAATAATTTGATTGTCTCCT+CGG - chr8_2:14564149-14564168 None:intergenic 25.0%
GACAGACATAAACATAATCT+TGG + chr8_2:14560872-14560891 Msa1236090:five_prime_UTR 30.0%
CTGTTATGTTATTATGTGTG+TGG - chr8_2:14560904-14560923 None:intergenic 30.0%
! GACAAATTCAAGTTTGATTG+AGG + chr8_2:14561423-14561442 Msa1236090:intron 30.0%
TTAGGTAGGTATTATCAAGT+TGG - chr8_2:14561581-14561600 None:intergenic 30.0%
AATCGTCATATCACTCAATA+TGG + chr8_2:14561645-14561664 Msa1236090:intron 30.0%
TCTTTCAGAGAACATTTGTT+GGG + chr8_2:14561685-14561704 Msa1236090:intron 30.0%
TCATGTCCTTCAATTTAAAC+AGG + chr8_2:14562323-14562342 Msa1236090:intron 30.0%
ACTGGATATGGAACTTTAAA+TGG - chr8_2:14562423-14562442 None:intergenic 30.0%
!!! GAACTAGCATTTTAATTGAG+GGG - chr8_2:14562594-14562613 None:intergenic 30.0%
!!! CGAACTAGCATTTTAATTGA+GGG - chr8_2:14562595-14562614 None:intergenic 30.0%
!!! ACGAACTAGCATTTTAATTG+AGG - chr8_2:14562596-14562615 None:intergenic 30.0%
! TATATGTTGCTGTTAAGTCT+TGG - chr8_2:14562660-14562679 None:intergenic 30.0%
AGCAACATATATATAGTGCA+GGG + chr8_2:14562669-14562688 Msa1236090:intron 30.0%
! GCTGTTAATAACTTTTGTCT+AGG - chr8_2:14562726-14562745 None:intergenic 30.0%
TATTAACAGCAATTTCATCG+GGG + chr8_2:14562736-14562755 Msa1236090:CDS 30.0%
! TTCCCCAGAATTCTTATTTA+AGG - chr8_2:14562879-14562898 None:intergenic 30.0%
TTATTCTCTTTAGACTGTGA+CGG + chr8_2:14563097-14563116 Msa1236090:intron 30.0%
AATGAGTGTTACAGATTGTT+GGG + chr8_2:14563236-14563255 Msa1236090:intron 30.0%
TTACACAAAAATTCCAGACA+TGG - chr8_2:14563314-14563333 None:intergenic 30.0%
!! TAAAGTTTGCTAATGTTCAG+GGG + chr8_2:14563346-14563365 Msa1236090:intron 30.0%
GAACTTGATTCAATCAGAAT+GGG + chr8_2:14563630-14563649 Msa1236090:intron 30.0%
! TAGTCTTAACCACTTATAGA+AGG - chr8_2:14563659-14563678 None:intergenic 30.0%
! GTTAAGACTAGACTTTTACT+AGG + chr8_2:14563669-14563688 Msa1236090:intron 30.0%
! AAAGTTTTCATTTTCACGCA+GGG - chr8_2:14563786-14563805 None:intergenic 30.0%
! AAAAGTTTTCATTTTCACGC+AGG - chr8_2:14563787-14563806 None:intergenic 30.0%
ATAGTCATCACTAGATTATC+AGG + chr8_2:14563808-14563827 Msa1236090:intron 30.0%
TAGTCATCACTAGATTATCA+GGG + chr8_2:14563809-14563828 Msa1236090:intron 30.0%
!!! AGATTTTGTATGCTGGTTTA+AGG + chr8_2:14564073-14564092 Msa1236090:intron 30.0%
ATTTAGCTAGCAATGATATG+TGG - chr8_2:14564216-14564235 None:intergenic 30.0%
ATTGCTAGCTAAATACAACA+TGG + chr8_2:14564222-14564241 Msa1236090:three_prime_UTR 30.0%
TAGCTAAATACAACATGGAA+GGG + chr8_2:14564227-14564246 Msa1236090:three_prime_UTR 30.0%
TATGTTATTATGTGTGTGGC+TGG - chr8_2:14560900-14560919 None:intergenic 35.0%
! GAAAGGTGATGGTAAAATTC+AGG - chr8_2:14561250-14561269 None:intergenic 35.0%
! GAATTTTACCATCACCTTTC+AGG + chr8_2:14561250-14561269 Msa1236090:intron 35.0%
ATTCAAGTCCTAGAACGTAT+AGG + chr8_2:14561287-14561306 Msa1236090:CDS 35.0%
TTCAAGTCCTAGAACGTATA+GGG + chr8_2:14561288-14561307 Msa1236090:CDS 35.0%
GGTCTATCATCTCATGAAAA+AGG - chr8_2:14561372-14561391 None:intergenic 35.0%
AATACCTACCTAACACAACA+AGG + chr8_2:14561588-14561607 Msa1236090:intron 35.0%
CATGTGTTGAACTATTGAAC+AGG - chr8_2:14561622-14561641 None:intergenic 35.0%
CTCTTTCAGAGAACATTTGT+TGG + chr8_2:14561684-14561703 Msa1236090:intron 35.0%
! CTTTCAGAGAACATTTGTTG+GGG + chr8_2:14561686-14561705 Msa1236090:intron 35.0%
!! ATGCCACATAATTCTAAGGT+TGG + chr8_2:14561974-14561993 Msa1236090:intron 35.0%
TAGCCAACCTTAGAATTATG+TGG - chr8_2:14561980-14561999 None:intergenic 35.0%
ATGACAAGCACAAACACAAA+CGG - chr8_2:14562134-14562153 None:intergenic 35.0%
!!! TCTCTGATCTTTTGAGACTT+TGG + chr8_2:14562203-14562222 Msa1236090:intron 35.0%
! GATTCTTTTTCCATCTCCAA+TGG - chr8_2:14562358-14562377 None:intergenic 35.0%
AGCTTAAATGGAACTGGATA+TGG - chr8_2:14562435-14562454 None:intergenic 35.0%
CAGCAACATATATATAGTGC+AGG + chr8_2:14562668-14562687 Msa1236090:intron 35.0%
ATTAACAGCAATTTCATCGG+GGG + chr8_2:14562737-14562756 Msa1236090:CDS 35.0%
GATGTGAAAAATAGCGACAA+TGG - chr8_2:14562823-14562842 None:intergenic 35.0%
TTCACATCCTTAATTCCAAC+AGG + chr8_2:14562835-14562854 Msa1236090:intron 35.0%
TCTATTGCCTGTTGGAATTA+AGG - chr8_2:14562845-14562864 None:intergenic 35.0%
TGAGTTTATCTATTGCCTGT+TGG - chr8_2:14562853-14562872 None:intergenic 35.0%
ATACACAAACTGTAAACGTG+AGG - chr8_2:14563213-14563232 None:intergenic 35.0%
CAATGAGTGTTACAGATTGT+TGG + chr8_2:14563235-14563254 Msa1236090:intron 35.0%
TTACAGATTGTTGGGAAGAA+TGG + chr8_2:14563244-14563263 Msa1236090:intron 35.0%
GAATGGACAAATAAAGTACG+TGG + chr8_2:14563261-14563280 Msa1236090:CDS 35.0%
TACGTGGTTAATATCTTGCT+TGG + chr8_2:14563277-14563296 Msa1236090:CDS 35.0%
ACGTGGTTAATATCTTGCTT+GGG + chr8_2:14563278-14563297 Msa1236090:CDS 35.0%
GGAATGTAGACAATGAAGAT+AGG + chr8_2:14563398-14563417 Msa1236090:intron 35.0%
TAGAAGTAATAACTGGAACC+TGG + chr8_2:14563464-14563483 Msa1236090:intron 35.0%
AGAAGTAATAACTGGAACCT+GGG + chr8_2:14563465-14563484 Msa1236090:intron 35.0%
ATGTTGGAATGTGATAAAGC+TGG + chr8_2:14563608-14563627 Msa1236090:intron 35.0%
GGAACTTGATTCAATCAGAA+TGG + chr8_2:14563629-14563648 Msa1236090:intron 35.0%
TCACTAGATTATCAGGGATA+AGG + chr8_2:14563815-14563834 Msa1236090:intron 35.0%
CACTAGATTATCAGGGATAA+GGG + chr8_2:14563816-14563835 Msa1236090:intron 35.0%
ACTAGATTATCAGGGATAAG+GGG + chr8_2:14563817-14563836 Msa1236090:intron 35.0%
ATTGTAACCTCGTACACTTT+GGG - chr8_2:14563911-14563930 None:intergenic 35.0%
ATTTGGCAAGAAGTTCATCT+TGG + chr8_2:14563976-14563995 Msa1236090:CDS 35.0%
!! CTACTATTTTGAGCAGCAAA+TGG - chr8_2:14564055-14564074 None:intergenic 35.0%
TTCCTTTGCAGATTCAATGA+TGG + chr8_2:14564108-14564127 Msa1236090:intron 35.0%
TACCATCATTGAATCTGCAA+AGG - chr8_2:14564113-14564132 None:intergenic 35.0%
TTGCAGATTCAATGATGGTA+AGG + chr8_2:14564113-14564132 Msa1236090:intron 35.0%
CTAGCTAAATACAACATGGA+AGG + chr8_2:14564226-14564245 Msa1236090:three_prime_UTR 35.0%
TAAATACAACATGGAAGGGA+AGG + chr8_2:14564231-14564250 Msa1236090:three_prime_UTR 35.0%
! ATTACGTTTTTGCACGTTCT+TGG + chr8_2:14564320-14564339 Msa1236090:three_prime_UTR 35.0%
! TTACGTTTTTGCACGTTCTT+GGG + chr8_2:14564321-14564340 Msa1236090:three_prime_UTR 35.0%
TGTCTGTCTGTCTGTAACAA+TGG + chr8_2:14560942-14560961 Msa1236090:exon 40.0%
AAGCGAGAATTTGAGGGATT+GGG - chr8_2:14561042-14561061 None:intergenic 40.0%
! GGTGATGGTAAAATTCAGGA+AGG - chr8_2:14561246-14561265 None:intergenic 40.0%
TCAAGTCCTAGAACGTATAG+GGG + chr8_2:14561289-14561308 Msa1236090:CDS 40.0%
GAGCAAAATTGAAGACGAAC+CGG - chr8_2:14561326-14561345 None:intergenic 40.0%
! CTCATTTTCACTACAAGACC+TGG + chr8_2:14561457-14561476 Msa1236090:CDS 40.0%
! TGATCCTTGTTGTGTTAGGT+AGG - chr8_2:14561595-14561614 None:intergenic 40.0%
! TGAGTGATCCTTGTTGTGTT+AGG - chr8_2:14561599-14561618 None:intergenic 40.0%
!!! GTGTCATTTTCTGATGCCAT+CGG + chr8_2:14561774-14561793 Msa1236090:CDS 40.0%
TGACAAGCACAAACACAAAC+GGG - chr8_2:14562133-14562152 None:intergenic 40.0%
CTGCTGCCTGTTTAAATTGA+AGG - chr8_2:14562332-14562351 None:intergenic 40.0%
CAGCTCTGTCAAACCTAAAA+AGG - chr8_2:14562380-14562399 None:intergenic 40.0%
CCAGTTCCATTTAAGCTACT+CGG + chr8_2:14562438-14562457 Msa1236090:CDS 40.0%
TCATCTCCGAGTAGCTTAAA+TGG - chr8_2:14562447-14562466 None:intergenic 40.0%
!!! CTAGCATTTTAATTGAGGGG+AGG - chr8_2:14562591-14562610 None:intergenic 40.0%
AGAAGATCCAGAACTAGAAG+AGG + chr8_2:14562898-14562917 Msa1236090:CDS 40.0%
GAAGATCCAGAACTAGAAGA+GGG + chr8_2:14562899-14562918 Msa1236090:CDS 40.0%
GCAGATGATATGGAATTCAC+AGG + chr8_2:14562928-14562947 Msa1236090:CDS 40.0%
!! TTTAGACTGTGACGGATAGT+TGG + chr8_2:14563105-14563124 Msa1236090:intron 40.0%
GAGAGGGTAGAAGTAATAAC+TGG + chr8_2:14563457-14563476 Msa1236090:intron 40.0%
GTTATTAACGCCTTTCAGCA+AGG + chr8_2:14563533-14563552 Msa1236090:intron 40.0%
AGAAAAGAGTCCTTGCTGAA+AGG - chr8_2:14563546-14563565 None:intergenic 40.0%
TACGTTACATCTCCACTTCA+AGG - chr8_2:14563579-14563598 None:intergenic 40.0%
TTGAAGTGGAGATGTAACGT+AGG + chr8_2:14563578-14563597 Msa1236090:intron 40.0%
TGAAGTGGAGATGTAACGTA+GGG + chr8_2:14563579-14563598 Msa1236090:intron 40.0%
TAACGTAGGGGATTTCATGT+TGG + chr8_2:14563592-14563611 Msa1236090:intron 40.0%
!! AATGGGTTGCCTTCTATAAG+TGG + chr8_2:14563647-14563666 Msa1236090:intron 40.0%
! TCATTTTCACGCAGGGAAAA+TGG - chr8_2:14563779-14563798 None:intergenic 40.0%
CATTGTAACCTCGTACACTT+TGG - chr8_2:14563912-14563931 None:intergenic 40.0%
CAAAGTGTACGAGGTTACAA+TGG + chr8_2:14563910-14563929 Msa1236090:CDS 40.0%
ATGGATGATGCAGCCATAAT+TGG + chr8_2:14563929-14563948 Msa1236090:CDS 40.0%
ATTCCAGGGGATATCCAAAT+GGG - chr8_2:14563958-14563977 None:intergenic 40.0%
AATTCCAGGGGATATCCAAA+TGG - chr8_2:14563959-14563978 None:intergenic 40.0%
TTTGGATATCCCCTGGAATT+TGG + chr8_2:14563959-14563978 Msa1236090:CDS 40.0%
AACTTCTTGCCAAATTCCAG+GGG - chr8_2:14563971-14563990 None:intergenic 40.0%
GAACTTCTTGCCAAATTCCA+GGG - chr8_2:14563972-14563991 None:intergenic 40.0%
TGAACTTCTTGCCAAATTCC+AGG - chr8_2:14563973-14563992 None:intergenic 40.0%
! TACGTTTTTGCACGTTCTTG+GGG + chr8_2:14564322-14564341 Msa1236090:three_prime_UTR 40.0%
GAAGCGAGAATTTGAGGGAT+TGG - chr8_2:14561043-14561062 None:intergenic 45.0%
GACACGAAGCGAGAATTTGA+GGG - chr8_2:14561048-14561067 None:intergenic 45.0%
AGACACGAAGCGAGAATTTG+AGG - chr8_2:14561049-14561068 None:intergenic 45.0%
TCACTCATCCAAGCTCTTGT+TGG + chr8_2:14561123-14561142 Msa1236090:CDS 45.0%
CTCAATAGCCTGAAAGGTGA+TGG - chr8_2:14561261-14561280 None:intergenic 45.0%
CAAGTCCTAGAACGTATAGG+GGG + chr8_2:14561290-14561309 Msa1236090:CDS 45.0%
! GACACAATATTGGTTACGCG+TGG - chr8_2:14561759-14561778 None:intergenic 45.0%
TGGCTTTCTTCGTGTCTATC+AGG + chr8_2:14562096-14562115 Msa1236090:intron 45.0%
ATATGTCTGACCCTATCTCG+TGG + chr8_2:14562260-14562279 Msa1236090:intron 45.0%
TATGTCTGACCCTATCTCGT+GGG + chr8_2:14562261-14562280 Msa1236090:intron 45.0%
AGTCTTTGTCCCACGAGATA+GGG - chr8_2:14562273-14562292 None:intergenic 45.0%
AAGTCTTTGTCCCACGAGAT+AGG - chr8_2:14562274-14562293 None:intergenic 45.0%
CCGAGTAGCTTAAATGGAAC+TGG - chr8_2:14562441-14562460 None:intergenic 45.0%
CTACTCGGAGATGAAGCAAA+GGG + chr8_2:14562453-14562472 Msa1236090:CDS 45.0%
ACCACATACTTGTCGCATTC+AGG + chr8_2:14562486-14562505 Msa1236090:CDS 45.0%
TCCTGAATGCGACAAGTATG+TGG - chr8_2:14562490-14562509 None:intergenic 45.0%
GAAACCTTCGTATCTCGAGA+GGG + chr8_2:14562508-14562527 Msa1236090:CDS 45.0%
TATTCCCTCTCGAGATACGA+AGG - chr8_2:14562515-14562534 None:intergenic 45.0%
TCGTATCTCGAGAGGGAATA+AGG + chr8_2:14562515-14562534 Msa1236090:CDS 45.0%
CGAGAGGGAATAAGGTGATT+AGG + chr8_2:14562523-14562542 Msa1236090:intron 45.0%
TTGCTTCTGCAGCACAAATG+TGG - chr8_2:14562697-14562716 None:intergenic 45.0%
TGGTTAGAGAATGCTGCCAA+TGG + chr8_2:14563125-14563144 Msa1236090:CDS 45.0%
AATGCTGCCAATGGTCTGAT+GGG + chr8_2:14563134-14563153 Msa1236090:CDS 45.0%
TAAACGTGAGGCAGAACTTG+TGG - chr8_2:14563201-14563220 None:intergenic 45.0%
!! AGTTTGCTAATGTTCAGGGG+AGG + chr8_2:14563349-14563368 Msa1236090:intron 45.0%
! GTTTGCTAATGTTCAGGGGA+GGG + chr8_2:14563350-14563369 Msa1236090:intron 45.0%
TAAGAGAGAGAGAGAGAGAG+AGG + chr8_2:14563440-14563459 Msa1236090:intron 45.0%
AAGAGAGAGAGAGAGAGAGA+GGG + chr8_2:14563441-14563460 Msa1236090:intron 45.0%
CTTTCCTAACATGCTAACCC+AGG - chr8_2:14563485-14563504 None:intergenic 45.0%
GAAGTGGAGATGTAACGTAG+GGG + chr8_2:14563580-14563599 Msa1236090:intron 45.0%
GATGATGCAGCCATAATTGG+TGG + chr8_2:14563932-14563951 Msa1236090:CDS 45.0%
TCCAAATGGGCCACCAATTA+TGG - chr8_2:14563945-14563964 None:intergenic 45.0%
ATACGCGCACAAATGCATAG+TGG + chr8_2:14564175-14564194 Msa1236090:CDS 45.0%
AATTCTCGCTTCGTGTCTGC+TGG + chr8_2:14561051-14561070 Msa1236090:CDS 50.0%
ATTCTCGCTTCGTGTCTGCT+GGG + chr8_2:14561052-14561071 Msa1236090:CDS 50.0%
CTTGGATGCCAACAAGAGCT+TGG - chr8_2:14561134-14561153 None:intergenic 50.0%
CAAGCTCTTGTTGGCATCCA+AGG + chr8_2:14561132-14561151 Msa1236090:CDS 50.0%
AAGAAGAACGTCCACGTCCT+TGG - chr8_2:14561152-14561171 None:intergenic 50.0%
! AGAGAGACGTTGAGTTGCTG+TGG - chr8_2:14561177-14561196 None:intergenic 50.0%
AGCACGCTCAATAGCCTGAA+AGG - chr8_2:14561267-14561286 None:intergenic 50.0%
ACACACCCCCTATACGTTCT+AGG - chr8_2:14561298-14561317 None:intergenic 50.0%
! TATAGGGGGTGTGTCTGATC+CGG + chr8_2:14561304-14561323 Msa1236090:CDS 50.0%
CAAGTTTGATTGAGGGTCGC+TGG + chr8_2:14561431-14561450 Msa1236090:CDS 50.0%
TGAATGGGTGATGCTGTTCC+AGG - chr8_2:14561478-14561497 None:intergenic 50.0%
TGGAACAGCATCACCCATTC+AGG + chr8_2:14561477-14561496 Msa1236090:CDS 50.0%
CTCAACTTTGAGCTCACCGA+TGG - chr8_2:14561793-14561812 None:intergenic 50.0%
CATCGGTGAGCTCAAAGTTG+AGG + chr8_2:14561791-14561810 Msa1236090:CDS 50.0%
AAACAGGCAGCAGCATCCAT+TGG + chr8_2:14562339-14562358 Msa1236090:intron 50.0%
GCTACTCGGAGATGAAGCAA+AGG + chr8_2:14562452-14562471 Msa1236090:CDS 50.0%
TCGGAGATGAAGCAAAGGGT+TGG + chr8_2:14562457-14562476 Msa1236090:CDS 50.0%
GGAAACCTTCGTATCTCGAG+AGG + chr8_2:14562507-14562526 Msa1236090:CDS 50.0%
AACAGCAATTTCATCGGGGG+TGG + chr8_2:14562740-14562759 Msa1236090:CDS 50.0%
ACAGCAATTTCATCGGGGGT+GGG + chr8_2:14562741-14562760 Msa1236090:CDS 50.0%
GAATGCTGCCAATGGTCTGA+TGG + chr8_2:14563133-14563152 Msa1236090:CDS 50.0%
CTGCTTTCCCATCAGACCAT+TGG - chr8_2:14563144-14563163 None:intergenic 50.0%
CAATGGTCTGATGGGAAAGC+AGG + chr8_2:14563142-14563161 Msa1236090:CDS 50.0%
!! GGAACCTGGGTTAGCATGTT+AGG + chr8_2:14563478-14563497 Msa1236090:intron 50.0%
CTGTCTGCATGTCCTTGAAG+TGG + chr8_2:14563564-14563583 Msa1236090:intron 50.0%
AAGTAGGCCCAAAGTGTACG+AGG + chr8_2:14563901-14563920 Msa1236090:CDS 50.0%
! GCCATAATTGGTGGCCCATT+TGG + chr8_2:14563941-14563960 Msa1236090:CDS 50.0%
GGTAAGGTCAGAATTAGCCG+AGG + chr8_2:14564129-14564148 Msa1236090:CDS 50.0%
CTTGTTGGCATCCAAGGACG+TGG + chr8_2:14561138-14561157 Msa1236090:CDS 55.0%
GCAGCAGCATCCATTGGAGA+TGG + chr8_2:14562345-14562364 Msa1236090:CDS 55.0%
GGTGGGTGTTCGAGAGGTAA+GGG + chr8_2:14562758-14562777 Msa1236090:intron 55.0%
! TGTTCGAGAGGTAAGGGTGC+TGG + chr8_2:14562764-14562783 Msa1236090:intron 55.0%
!! CACTCGCCCTCTTCTAGTTC+TGG - chr8_2:14562908-14562927 None:intergenic 55.0%
CAGAACTAGAAGAGGGCGAG+TGG + chr8_2:14562906-14562925 Msa1236090:CDS 55.0%
AGGGCGAGTGGCAGATGATA+TGG + chr8_2:14562918-14562937 Msa1236090:CDS 55.0%
GGGCTGAAGTTCTCCATGTC+TGG + chr8_2:14563298-14563317 Msa1236090:CDS 55.0%
TGGCCCATTTGGATATCCCC+TGG + chr8_2:14563952-14563971 Msa1236090:CDS 55.0%
GGGTGGGTGTTCGAGAGGTA+AGG + chr8_2:14562757-14562776 Msa1236090:intron 60.0%
ATCGGGGGTGGGTGTTCGAG+AGG + chr8_2:14562752-14562771 Msa1236090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 14560853 14564398 14560853 ID=Msa1236090;Name=Msa1236090
chr8_2 mRNA 14560853 14564398 14560853 ID=Msa1236090-mRNA-1;Parent=Msa1236090;Name=Msa1236090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=108|1|1|1|1|1|11|204|387
chr8_2 exon 14560853 14561188 14560853 ID=Msa1236090-mRNA-1:exon:5587;Parent=Msa1236090-mRNA-1
chr8_2 exon 14561272 14561325 14561272 ID=Msa1236090-mRNA-1:exon:5588;Parent=Msa1236090-mRNA-1
chr8_2 exon 14561424 14561498 14561424 ID=Msa1236090-mRNA-1:exon:5589;Parent=Msa1236090-mRNA-1
chr8_2 exon 14561693 14561812 14561693 ID=Msa1236090-mRNA-1:exon:5590;Parent=Msa1236090-mRNA-1
chr8_2 exon 14562345 14562536 14562345 ID=Msa1236090-mRNA-1:exon:5591;Parent=Msa1236090-mRNA-1
chr8_2 exon 14562690 14562773 14562690 ID=Msa1236090-mRNA-1:exon:5592;Parent=Msa1236090-mRNA-1
chr8_2 exon 14562857 14562949 14562857 ID=Msa1236090-mRNA-1:exon:5593;Parent=Msa1236090-mRNA-1
chr8_2 exon 14563110 14563163 14563110 ID=Msa1236090-mRNA-1:exon:5594;Parent=Msa1236090-mRNA-1
chr8_2 exon 14563250 14563329 14563250 ID=Msa1236090-mRNA-1:exon:5595;Parent=Msa1236090-mRNA-1
chr8_2 exon 14563898 14564005 14563898 ID=Msa1236090-mRNA-1:exon:5596;Parent=Msa1236090-mRNA-1
chr8_2 exon 14564119 14564398 14564119 ID=Msa1236090-mRNA-1:exon:5597;Parent=Msa1236090-mRNA-1
chr8_2 five_prime_UTR 14560853 14560960 14560853 ID=Msa1236090-mRNA-1:five_prime_utr;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14560961 14561188 14560961 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14561272 14561325 14561272 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14561424 14561498 14561424 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14561693 14561812 14561693 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14562345 14562536 14562345 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14562690 14562773 14562690 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14562857 14562949 14562857 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14563110 14563163 14563110 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14563250 14563329 14563250 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14563898 14564005 14563898 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 CDS 14564119 14564194 14564119 ID=Msa1236090-mRNA-1:cds;Parent=Msa1236090-mRNA-1
chr8_2 three_prime_UTR 14564195 14564398 14564195 ID=Msa1236090-mRNA-1:three_prime_utr;Parent=Msa1236090-mRNA-1
Gene Sequence

>Msa1236090

ATGGCTCTCACTCTCAGAGTTGTGAATGTAAACAATATAGGATTTGAGTCATGTTCACGTTGTTCAACTTTCGTTTCTCCCAATCCCTCAAATTCTCGCTTCGTGTCTGCTGGGTGTTCTAAAGTTGAGCAAATTTCAGTTGTTACTGAAGAATCTGAAAACTCACTCATCCAAGCTCTTGTTGGCATCCAAGGACGTGGACGTTCTTCTTCTCCACAGCAACTCAACGCTATTGAGCGTGCTATTCAAGTCCTAGAACGTATAGGGGGTGTGTCTGATCCGACAAATTCAAGTTTGATTGAGGGTCGCTGGCAGCTCATTTTCACTACAAGACCTGGAACAGCATCACCCATTCAGAGAACATTTGTTGGGGTTGATTTTTTTAGTGTATTTCAAGAGGTTTATCTTCAAACAAATGATCCACGCGTAACCAATATTGTGTCATTTTCTGATGCCATCGGTGAGCTCAAAGTTGAGGCAGCAGCATCCATTGGAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTCAAATTTCTTCCATTTAAAGTTCCATATCCAGTTCCATTTAAGCTACTCGGAGATGAAGCAAAGGGTTGGTTAGACACCACATACTTGTCGCATTCAGGAAACCTTCGTATCTCGAGAGGGAATAAGGGAACCACATTTGTGCTGCAGAAGCAAACTGAACCTAGACAAAAGTTATTAACAGCAATTTCATCGGGGGTGGGTGTTCGAGAGGCAATAGATAAACTCATTTCCTTAAATAAGAATTCTGGGGAAGAAGATCCAGAACTAGAAGAGGGCGAGTGGCAGATGATATGGAATTCACAGACTGTGACGGATAGTTGGTTAGAGAATGCTGCCAATGGTCTGATGGGAAAGCAGATTGTTGGGAAGAATGGACAAATAAAGTACGTGGTTAATATCTTGCTTGGGCTGAAGTTCTCCATGTCTGGAATTTTTGTAAAAAGTAGGCCCAAAGTGTACGAGGTTACAATGGATGATGCAGCCATAATTGGTGGCCCATTTGGATATCCCCTGGAATTTGGCAAGAAGTTCATCTTGGAGATTCTATTCAATGATGGTAAGGTCAGAATTAGCCGAGGAGACAATCAAATTATTTTCGTACATACGCGCACAAATGCATAG

Protein sequence

>Msa1236090

MALTLRVVNVNNIGFESCSRCSTFVSPNPSNSRFVSAGCSKVEQISVVTEESENSLIQALVGIQGRGRSSSPQQLNAIERAIQVLERIGGVSDPTNSSLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAASIGDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKNSGEEDPELEEGEWQMIWNSQTVTDSWLENAANGLMGKQIVGKNGQIKYVVNILLGLKFSMSGIFVKSRPKVYEVTMDDAAIIGGPFGYPLEFGKKFILEILFNDGKVRISRGDNQIIFVHTRTNA*