AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550820 MtrunA17_Chr4g0035811 94.679 545 24 2 1 542 34 576 0.0 1006
Msa0550820 MtrunA17_Chr4g0035791 89.617 549 49 3 1 542 1 548 0.0 956
Msa0550820 MtrunA17_Chr4g0035761 80.470 553 93 3 1 541 1 550 0.0 878
Msa0550820 MtrunA17_Chr4g0035741 71.245 546 127 5 8 542 24 550 0.0 760
Msa0550820 MtrunA17_Chr4g0035751 70.245 531 148 6 1 529 1 523 0.0 734
Msa0550820 MtrunA17_Chr5g0448591 25.813 492 307 17 65 524 78 543 6.45e-23 102
Msa0550820 MtrunA17_Chr2g0328761 24.160 476 299 12 100 524 36 500 3.24e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550820 AT2G21340.1 60.391 563 193 7 3 542 4 559 0.0 679
Msa0550820 AT2G21340.2 60.036 563 192 8 3 542 4 556 0.0 669
Msa0550820 AT4G39030.1 64.847 458 152 2 89 541 89 542 0.0 610
Msa0550820 AT2G38330.1 25.000 516 353 10 23 524 13 508 9.25e-22 99.4
Msa0550820 AT4G38380.5 22.889 533 352 16 24 524 32 537 1.05e-14 77.4
Msa0550820 AT3G08040.2 26.016 369 245 11 169 524 55 408 1.59e-14 76.3
Msa0550820 AT3G08040.1 26.016 369 245 11 169 524 159 512 1.74e-14 76.6
Msa0550820 AT4G38380.2 22.325 542 354 16 24 524 32 547 7.77e-14 74.7
Msa0550820 AT4G38380.1 22.325 542 354 16 24 524 32 547 7.77e-14 74.7
Msa0550820 AT1G51340.3 22.698 467 293 10 117 524 51 508 2.08e-12 70.1
Msa0550820 AT1G51340.5 22.698 467 293 10 117 524 51 508 2.08e-12 70.1
Msa0550820 AT1G51340.2 22.698 467 293 10 117 524 51 508 2.08e-12 70.1
Msa0550820 AT4G38380.3 22.727 462 299 11 100 524 35 475 2.42e-12 69.7
Msa0550820 AT1G51340.1 24.784 347 247 8 183 524 165 502 6.39e-11 65.5

Find 157 sgRNAs with CRISPR-Local

Find 495 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTCGTTCTTGGAATT+TGG 0.118992 4_1:+46396128 Msa0550820:three_prime_UTR
TAATGCATTGGTTTGTTAAA+TGG 0.148303 4_1:-46389817 None:intergenic
TTTGAATGGTCTAGTATTAT+TGG 0.209178 4_1:+46395464 Msa0550820:CDS
GTCGATTGCTACTTCAAATA+TGG 0.215269 4_1:+46390255 Msa0550820:CDS
CTGGACCTGCTATTGGTCTT+TGG 0.222999 4_1:+46390026 Msa0550820:CDS
TACTCTCCTCTATTTCTAAA+TGG 0.226180 4_1:-46396102 None:intergenic
AGTAAATATGTTCTCGTTCT+TGG 0.242038 4_1:+46396121 Msa0550820:three_prime_UTR
GCTGCTGCCAGTATTATAAA+TGG 0.247426 4_1:+46392819 Msa0550820:CDS
ATTTGTGACATTGATGTTAA+AGG 0.250101 4_1:+46393319 Msa0550820:CDS
AAGGAAATTGTATTGTTTAC+TGG 0.254805 4_1:+46390007 Msa0550820:CDS
CTAAGGTCTCTTCTAACTAT+TGG 0.258425 4_1:+46393966 Msa0550820:CDS
TCAATTGAACTTGCTGCTTT+AGG 0.260915 4_1:+46390103 Msa0550820:CDS
ATCAATGGGTACAAATAAAA+TGG 0.278415 4_1:+46393461 Msa0550820:CDS
ATGGGATTGCTGGGGCTGCA+TGG 0.278670 4_1:+46392877 Msa0550820:CDS
CTCTGAAAATCATCTGTAGA+TGG 0.279023 4_1:-46396265 None:intergenic
TGCCACTGGGTATAGTTATT+TGG 0.282587 4_1:+46396050 Msa0550820:three_prime_UTR
ACCAATTCCATTTATAATAC+TGG 0.285900 4_1:-46392826 None:intergenic
TGTTCTCGTTCTTGGAATTT+GGG 0.288693 4_1:+46396129 Msa0550820:three_prime_UTR
GGAGTTCCATTTATAGTTCA+TGG 0.296507 4_1:+46395820 Msa0550820:three_prime_UTR
TTGGGGACCCTTGAAGGCTT+TGG 0.310354 4_1:+46392797 Msa0550820:CDS
TGCTACTGCACTTGCTAAAC+AGG 0.315887 4_1:+46390279 Msa0550820:CDS
ATGTTTGCACCTTGCACTTT+GGG 0.319354 4_1:-46392317 None:intergenic
GTCTTGGTATGAAGGATTCT+TGG 0.321480 4_1:+46392778 Msa0550820:intron
TTTGCCTTCACCATTCCTTC+AGG 0.327061 4_1:+46393257 Msa0550820:CDS
AATGTACCATGAACTATAAA+TGG 0.328094 4_1:-46395826 None:intergenic
CATAAATGATTGAGCAGTTT+GGG 0.328411 4_1:-46393649 None:intergenic
TACTTAGGCTATGGGATTGC+TGG 0.328970 4_1:+46392867 Msa0550820:CDS
ATCCCTTCTCGTTTAGAGTT+TGG 0.333193 4_1:-46393226 None:intergenic
GGTACTATATGTACATTCTT+TGG 0.333716 4_1:-46391942 None:intergenic
CCCTCCAGGCCAACAGTTGC+GGG 0.334192 4_1:-46394227 None:intergenic
CTCATTGATACTGCTGTTGT+TGG 0.336581 4_1:+46390070 Msa0550820:CDS
AACTGGTTGAGCAGAGTATA+TGG 0.336997 4_1:+46389975 Msa0550820:CDS
TTGTTTACTGGACCTGCTAT+TGG 0.337810 4_1:+46390019 Msa0550820:CDS
TGGGATTGCTGGGGCTGCAT+GGG 0.346105 4_1:+46392878 Msa0550820:CDS
TCGGAAACTAAGCGGGGAAA+TGG 0.352075 4_1:+46395967 Msa0550820:three_prime_UTR
GCATAAATGATTGAGCAGTT+TGG 0.352223 4_1:-46393650 None:intergenic
TTTCCCTTGCTGGATTTCAA+TGG 0.356634 4_1:+46395608 Msa0550820:CDS
CGGAAACTAAGCGGGGAAAT+GGG 0.359119 4_1:+46395968 Msa0550820:three_prime_UTR
GCATGGCCTTGTTTACTTGT+TGG 0.365617 4_1:+46392286 Msa0550820:CDS
CATGGCCTTGTTTACTTGTT+GGG 0.366151 4_1:+46392287 Msa0550820:CDS
AGTTGAAGACTGCATAGTTT+AGG 0.368285 4_1:+46395799 Msa0550820:exon
CAGATCCTATCTAGCAGATA+TGG 0.371566 4_1:+46395568 Msa0550820:intron
CTAACTATTGGAGCTGTACT+CGG 0.380237 4_1:+46393978 Msa0550820:CDS
GACAGGCTCGGTCGCTTCTA+AGG 0.385164 4_1:+46393949 Msa0550820:intron
TCTTGGTATGAAGGATTCTT+GGG 0.387786 4_1:+46392779 Msa0550820:CDS
GGATTCTTGGGGACCCTTGA+AGG 0.393221 4_1:+46392791 Msa0550820:CDS
GCAAACCATATCTGCTAGAT+AGG 0.394990 4_1:-46395573 None:intergenic
TTCATGCAGTCTTGGTATGA+AGG 0.398143 4_1:+46392770 Msa0550820:intron
TTCCCTTGCTGGATTTCAAT+GGG 0.401577 4_1:+46395609 Msa0550820:CDS
GCTATTGGTCTTTGGTTATG+TGG 0.403668 4_1:+46390034 Msa0550820:CDS
TGGCCTGGAGGGAACATTGC+TGG 0.407179 4_1:+46394238 Msa0550820:CDS
ACCTGATCAGATGGTTATCC+AGG 0.414172 4_1:+46394058 Msa0550820:CDS
GCGATCAAGTGTGGTGCCAC+TGG 0.414677 4_1:+46396036 Msa0550820:three_prime_UTR
GATTGAGCAGTTTGGGATAG+AGG 0.415616 4_1:-46393642 None:intergenic
GGCAGCAGCCAAAGCCTTCA+AGG 0.419588 4_1:-46392805 None:intergenic
AACATCAATGTCACAAATAC+AGG 0.423376 4_1:-46393314 None:intergenic
GTATGGAGTAAATCGGAGTT+TGG 0.425725 4_1:+46393683 Msa0550820:CDS
AGAACTTGAAGCGACCGTTC+CGG 0.430414 4_1:-46389853 None:intergenic
GCCAGTATTATAAATGGAAT+TGG 0.442168 4_1:+46392825 Msa0550820:CDS
AAAAGGAAAGAGAAAGAAAA+CGG 0.443233 4_1:-46389629 None:intergenic
TGGGGCTGCATGGGCTACAT+TGG 0.444208 4_1:+46392887 Msa0550820:CDS
TCCCTCCAGGCCAACAGTTG+CGG 0.444843 4_1:-46394228 None:intergenic
TATGTTTGCACCTTGCACTT+TGG 0.449203 4_1:-46392318 None:intergenic
CTGTGCAGATACTTAGGCTA+TGG 0.449705 4_1:+46392858 Msa0550820:CDS
GCTTTGCCATTTAGAAATAG+AGG 0.450678 4_1:+46396096 Msa0550820:three_prime_UTR
TTTATAAGCTTGTCAATGAC+TGG 0.456026 4_1:+46395432 Msa0550820:CDS
TTGGTATTAGATTCGAGGGT+TGG 0.456370 4_1:+46392264 Msa0550820:intron
CACACCCGCAACTGTTGGCC+TGG 0.462187 4_1:+46394223 Msa0550820:CDS
AAGATATATGTTCAAGGCGG+TGG 0.465973 4_1:-46396010 None:intergenic
CGCAGCTAATACTTATGTCC+AGG 0.472482 4_1:+46391965 Msa0550820:CDS
CCCGCAACTGTTGGCCTGGA+GGG 0.472789 4_1:+46394227 Msa0550820:CDS
TTTGCTTATGCAGGCTGGAC+GGG 0.473101 4_1:+46395401 Msa0550820:intron
TTTATGCCTGAGTTGATGTA+TGG 0.474513 4_1:+46393666 Msa0550820:CDS
ATAATTCTGTGCAGATACTT+AGG 0.476106 4_1:+46392852 Msa0550820:CDS
TTGTTGGAACATCTGTTCCT+TGG 0.476393 4_1:+46394015 Msa0550820:CDS
AAATGCCATTGGGAGATAGA+AGG 0.478517 4_1:-46395740 None:intergenic
TCCTGGATAACCATCTGATC+AGG 0.491456 4_1:-46394059 None:intergenic
AGTTGATGTATGGAGTAAAT+CGG 0.492680 4_1:+46393676 Msa0550820:CDS
AATTGGGAAGATGACGGAAA+AGG 0.493188 4_1:-46389646 None:intergenic
AGTTGTATCGGAAACTAAGC+GGG 0.499067 4_1:+46395960 Msa0550820:three_prime_UTR
TTGCCTTCACCATTCCTTCA+GGG 0.500207 4_1:+46393258 Msa0550820:CDS
CTACAGGTGCTGAGTTGTAT+CGG 0.501483 4_1:+46395948 Msa0550820:three_prime_UTR
TATTGGGTTAGCATGTGGCT+TGG 0.503143 4_1:+46391738 Msa0550820:CDS
CTTGTTCTTCAACACACTCG+TGG 0.503790 4_1:-46389937 None:intergenic
TTCCGAGTATAAAATGCCAT+TGG 0.504973 4_1:-46395751 None:intergenic
AGAAGAAGAAGTGAAGGAAC+TGG 0.505182 4_1:+46389958 Msa0550820:CDS
TCCGAGTATAAAATGCCATT+GGG 0.511889 4_1:-46395750 None:intergenic
ACTTAGGCTATGGGATTGCT+GGG 0.518480 4_1:+46392868 Msa0550820:CDS
TTCTTCTTGAGAAGGGAGGA+TGG 0.522481 4_1:-46389785 None:intergenic
CTTCACCATTCCTTCAGGGA+AGG 0.523053 4_1:+46393262 Msa0550820:CDS
TGGGAGATAGAAGGCGCAGA+AGG 0.526952 4_1:-46395731 None:intergenic
TAACTATTGGAGCTGTACTC+GGG 0.527379 4_1:+46393979 Msa0550820:CDS
AGATGTGTTCTTCTTGAGAA+GGG 0.531691 4_1:-46389792 None:intergenic
GAGTATATGGATTCAGATGA+AGG 0.533192 4_1:+46389988 Msa0550820:CDS
AGTAAATCGGAGTTTGGTAA+AGG 0.533532 4_1:+46393689 Msa0550820:CDS
GAATTGTATCGACATTAAGA+TGG 0.534271 4_1:-46395913 None:intergenic
AAATCATCTGTAGATGGGAA+TGG 0.535165 4_1:-46396259 None:intergenic
TCTGAAAATCATCTGTAGAT+GGG 0.543808 4_1:-46396264 None:intergenic
AAAGGAAAGAGAAAGAAAAC+GGG 0.544189 4_1:-46389628 None:intergenic
GGAAACTAAGCGGGGAAATG+GGG 0.546802 4_1:+46395969 Msa0550820:three_prime_UTR
CGATCAAGTGTGGTGCCACT+GGG 0.547254 4_1:+46396037 Msa0550820:three_prime_UTR
TAGATGTGTTCTTCTTGAGA+AGG 0.547962 4_1:-46389793 None:intergenic
TGTGCAGATACTTAGGCTAT+GGG 0.548209 4_1:+46392859 Msa0550820:CDS
TCGAGGATGTAATAATGCAT+TGG 0.548440 4_1:-46389829 None:intergenic
AGAACAAGAAGAAGAAGTGA+AGG 0.549967 4_1:+46389952 Msa0550820:CDS
AAGCCACCATAAAAGTAGAA+AGG 0.550147 4_1:-46396077 None:intergenic
ATTCAGTACTCGGAAACTAC+AGG 0.553904 4_1:+46395932 Msa0550820:three_prime_UTR
AAATTCCTTCCCTGAAGGAA+TGG 0.556149 4_1:-46393267 None:intergenic
ATTTGCTTATGCAGGCTGGA+CGG 0.559004 4_1:+46395400 Msa0550820:intron
ATGGTCACACCCGCAACTGT+TGG 0.560257 4_1:+46394218 Msa0550820:CDS
GACAGAAATTCCTTCCCTGA+AGG 0.564886 4_1:-46393272 None:intergenic
ATTACATCCTCGAGCCGGAA+CGG 0.565954 4_1:+46389839 Msa0550820:CDS
TTTGGTGCAACAACGCTCGC+AGG 0.566164 4_1:+46391784 Msa0550820:CDS
ATACCAGCAATGTTCCCTCC+AGG 0.568305 4_1:-46394241 None:intergenic
TGTCGATACAATTCAGTACT+CGG 0.568524 4_1:+46395922 Msa0550820:three_prime_UTR
ATTAGATTCGAGGGTTGGCA+TGG 0.569888 4_1:+46392269 Msa0550820:intron
GCAGCAGCCAAAGCCTTCAA+GGG 0.575285 4_1:-46392804 None:intergenic
ATGGTACATTATACAAATAG+AGG 0.576635 4_1:+46395839 Msa0550820:three_prime_UTR
GATATGGTTTGCAAGGCTGT+TGG 0.577198 4_1:+46395584 Msa0550820:CDS
TCTTCTTGAGAAGGGAGGAT+GGG 0.583100 4_1:-46389784 None:intergenic
TCTAGCAGATATGGTTTGCA+AGG 0.584349 4_1:+46395577 Msa0550820:CDS
GAGCCAAACTCTAAACGAGA+AGG 0.585139 4_1:+46393223 Msa0550820:CDS
TCTGTAACATTGAAATCCGC+GGG 0.585948 4_1:-46389602 None:intergenic
CTGCGCCTTCTATCTCCCAA+TGG 0.586913 4_1:+46395735 Msa0550820:CDS
TCTTGAGAAGGGAGGATGGG+AGG 0.589007 4_1:-46389781 None:intergenic
GTCTGTAACATTGAAATCCG+CGG 0.590540 4_1:-46389603 None:intergenic
GGTCGATCGCCCAAAGTGCA+AGG 0.590625 4_1:+46392308 Msa0550820:CDS
GAAGCGACCGTTCCGGCTCG+AGG 0.591242 4_1:-46389846 None:intergenic
GAAACTAAGCGGGGAAATGG+GGG 0.595816 4_1:+46395970 Msa0550820:three_prime_UTR
GAGGATGGGAGGAAATGAAG+AGG 0.602288 4_1:-46389770 None:intergenic
CTTCCCTGAAGGAATGGTGA+AGG 0.604960 4_1:-46393261 None:intergenic
AGCCAAACTCTAAACGAGAA+GGG 0.607954 4_1:+46393224 Msa0550820:CDS
ACCCGCAACTGTTGGCCTGG+AGG 0.612770 4_1:+46394226 Msa0550820:CDS
TACATGTTATGCACAATATG+TGG 0.612778 4_1:+46393615 Msa0550820:CDS
GATACTGCTGTTGTTGGTCA+AGG 0.613645 4_1:+46390076 Msa0550820:CDS
GCATTATTACATCCTCGAGC+CGG 0.617181 4_1:+46389834 Msa0550820:CDS
GGGAGATAGAAGGCGCAGAA+GGG 0.619859 4_1:-46395730 None:intergenic
TGGACATAAGTATTAGCTGC+GGG 0.623250 4_1:-46391963 None:intergenic
TTTACTCCATACATCAACTC+AGG 0.632825 4_1:-46393672 None:intergenic
TACCCATTGAAATCCAGCAA+GGG 0.639256 4_1:-46395611 None:intergenic
TGTGTTCTTCTTGAGAAGGG+AGG 0.639307 4_1:-46389789 None:intergenic
CATAACCAAAGACCAATAGC+AGG 0.639786 4_1:-46390031 None:intergenic
ATCGACCCAACAAGTAAACA+AGG 0.644860 4_1:-46392292 None:intergenic
AGATTTGGTTATCATTCCCG+CGG 0.646896 4_1:+46389586 None:intergenic
CTTAGGCTATGGGATTGCTG+GGG 0.650164 4_1:+46392869 Msa0550820:CDS
CTTGGTATGAAGGATTCTTG+GGG 0.656274 4_1:+46392780 Msa0550820:CDS
GGAAAGAGAAAGAAAACGGG+TGG 0.659787 4_1:-46389625 None:intergenic
TTACCCATTGAAATCCAGCA+AGG 0.667040 4_1:-46395612 None:intergenic
AAAATGTAGGGGAATAACCA+AGG 0.670464 4_1:-46394032 None:intergenic
GAGTTGTATCGGAAACTAAG+CGG 0.674848 4_1:+46395959 Msa0550820:three_prime_UTR
TGATCAGATGGTTATCCAGG+AGG 0.694479 4_1:+46394061 Msa0550820:CDS
CTGGACATAAGTATTAGCTG+CGG 0.697551 4_1:-46391964 None:intergenic
GGAGGAAATGAAGAGGTACG+TGG 0.705335 4_1:-46389763 None:intergenic
TGACTTGTAAGGTAGGAATG+TGG 0.734667 4_1:+46396160 Msa0550820:three_prime_UTR
GTATCAATGAGACTCATCAA+CGG 0.734956 4_1:-46390058 None:intergenic
GTTGTATCGGAAACTAAGCG+GGG 0.736927 4_1:+46395961 Msa0550820:three_prime_UTR
TACCAAATAACTATACCCAG+TGG 0.759548 4_1:-46396052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGATTTTAAAAAAATTGA+AGG + chr4_1:46391111-46391130 Msa0550820:intron 10.0%
!! TATCATTTAATTCATATTAT+TGG + chr4_1:46392735-46392754 Msa0550820:intron 10.0%
!! AAGAAAACAGAAAAAAAATT+GGG - chr4_1:46389665-46389684 None:intergenic 15.0%
!! AAAGAAAACAGAAAAAAAAT+TGG - chr4_1:46389666-46389685 None:intergenic 15.0%
!!! CATATTTAGAAACATTTTAT+AGG + chr4_1:46391179-46391198 Msa0550820:intron 15.0%
!! ACAATCTTAATTTAAATTGA+AGG - chr4_1:46392011-46392030 None:intergenic 15.0%
!!! TTTCTTGTGATTTTAAATAA+AGG + chr4_1:46392102-46392121 Msa0550820:intron 15.0%
!!! ATTTTAAATAAAGGTTTGTA+TGG + chr4_1:46392111-46392130 Msa0550820:intron 15.0%
!! TTTATCACTAAAATAGAATA+TGG - chr4_1:46392423-46392442 None:intergenic 15.0%
!! TTGTATTAAGCTTATTAATT+AGG + chr4_1:46392997-46393016 Msa0550820:intron 15.0%
!! TTAATTAATCGTATCATATA+TGG + chr4_1:46393113-46393132 Msa0550820:intron 15.0%
!! TAATTAATCGTATCATATAT+GGG + chr4_1:46393114-46393133 Msa0550820:intron 15.0%
!!! GAATTTTCAGTTATATTTAA+AGG - chr4_1:46393396-46393415 None:intergenic 15.0%
!!! TTAAAATATGTTTTTGAGTT+TGG - chr4_1:46393563-46393582 None:intergenic 15.0%
!!! AGTTGAATTTCATTTTATAT+AGG + chr4_1:46393795-46393814 Msa0550820:intron 15.0%
!! TGAATATATATAACAATGTA+TGG - chr4_1:46393903-46393922 None:intergenic 15.0%
!!! TTATTTTATTGTTCTTATGT+TGG + chr4_1:46394296-46394315 Msa0550820:intron 15.0%
!!! ATTTTTATGCTAAAAATCTT+AGG - chr4_1:46394369-46394388 None:intergenic 15.0%
!! TAAAAGATATAAAATTACCA+TGG - chr4_1:46394443-46394462 None:intergenic 15.0%
!! ATAATAAATGGGAAAAAATA+TGG + chr4_1:46394767-46394786 Msa0550820:intron 15.0%
!! GTTATTAAGTACATTATATA+TGG - chr4_1:46394927-46394946 None:intergenic 15.0%
!! ACTTATTTATATATTTATCC+AGG + chr4_1:46395348-46395367 Msa0550820:intron 15.0%
!!! TGACACTAATTATATTTTTA+TGG - chr4_1:46396237-46396256 None:intergenic 15.0%
!!! TTTTTCTTCATATTCATGTA+TGG - chr4_1:46389909-46389928 None:intergenic 20.0%
!!! TACTGTTTTTTGTGATTATT+TGG + chr4_1:46390213-46390232 Msa0550820:CDS 20.0%
!!! ACTGTTTTTTGTGATTATTT+GGG + chr4_1:46390214-46390233 Msa0550820:CDS 20.0%
!! TTATCTACCCAATTAAAAAA+GGG - chr4_1:46390320-46390339 None:intergenic 20.0%
!! TGTTATATGATCATATATTG+TGG - chr4_1:46391141-46391160 None:intergenic 20.0%
!!! TAAGTATTTTTGTGTAGAAT+AGG + chr4_1:46391680-46391699 Msa0550820:intron 20.0%
!!! AAGTATTTTTGTGTAGAATA+GGG + chr4_1:46391681-46391700 Msa0550820:intron 20.0%
!!! CTTTTTTTCACAAGATTATT+TGG + chr4_1:46391766-46391785 Msa0550820:CDS 20.0%
!!! GTTGTATACTTTATTTTAAG+AGG - chr4_1:46392142-46392161 None:intergenic 20.0%
!! AACAGTTCAAAGAATAATTT+AGG - chr4_1:46392620-46392639 None:intergenic 20.0%
!! AAATACTTAAACTATTCTCA+GGG - chr4_1:46392661-46392680 None:intergenic 20.0%
!! TAAATACTTAAACTATTCTC+AGG - chr4_1:46392662-46392681 None:intergenic 20.0%
!! TATGTTGTAGATAATGAATT+AGG + chr4_1:46392941-46392960 Msa0550820:intron 20.0%
!! ATGTTGTAGATAATGAATTA+GGG + chr4_1:46392942-46392961 Msa0550820:intron 20.0%
!!! TATATATTTTGCTACATCAA+TGG + chr4_1:46393446-46393465 Msa0550820:CDS 20.0%
!!! ATATATTTTGCTACATCAAT+GGG + chr4_1:46393447-46393466 Msa0550820:CDS 20.0%
!! TACTACAATATGAATTAGTA+AGG - chr4_1:46393872-46393891 None:intergenic 20.0%
!! TCATGTTAGATTGAAATATT+AGG + chr4_1:46394266-46394285 Msa0550820:intron 20.0%
!! TTCAACTTGTCTATAATAAA+TGG + chr4_1:46394755-46394774 Msa0550820:intron 20.0%
!! TCAACTTGTCTATAATAAAT+GGG + chr4_1:46394756-46394775 Msa0550820:intron 20.0%
!!! AAGGCATTAATTAGTTATAT+GGG - chr4_1:46395228-46395247 None:intergenic 20.0%
!!! TAAGGCATTAATTAGTTATA+TGG - chr4_1:46395229-46395248 None:intergenic 20.0%
! AAAAGGAAAGAGAAAGAAAA+CGG - chr4_1:46389632-46389651 None:intergenic 25.0%
! AAAAAAAATTGGGAAGATGA+CGG - chr4_1:46389655-46389674 None:intergenic 25.0%
!!! TAATGCATTGGTTTGTTAAA+TGG - chr4_1:46389820-46389839 None:intergenic 25.0%
! AAGGAAATTGTATTGTTTAC+TGG + chr4_1:46390007-46390026 Msa0550820:CDS 25.0%
!!! TTTAATGCCCCTTTTTTAAT+TGG + chr4_1:46390309-46390328 Msa0550820:intron 25.0%
!!! TTAATGCCCCTTTTTTAATT+GGG + chr4_1:46390310-46390329 Msa0550820:intron 25.0%
! TATCTACCCAATTAAAAAAG+GGG - chr4_1:46390319-46390338 None:intergenic 25.0%
! GTTATCTACCCAATTAAAAA+AGG - chr4_1:46390321-46390340 None:intergenic 25.0%
!! AGATAGTTGGTATTCAAATA+TGG + chr4_1:46390365-46390384 Msa0550820:intron 25.0%
!! GATAGTTGGTATTCAAATAT+GGG + chr4_1:46390366-46390385 Msa0550820:intron 25.0%
! TCATAAAAGTTGTTAGCAAA+TGG - chr4_1:46390761-46390780 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG + chr4_1:46390799-46390818 Msa0550820:intron 25.0%
! CTTCTGAATTTATACTTAAG+AGG + chr4_1:46391062-46391081 Msa0550820:intron 25.0%
!!! AAAAAATTCACTGGTCTTTT+GGG - chr4_1:46391582-46391601 None:intergenic 25.0%
! AATAATGGCAAAAAATTCAC+TGG - chr4_1:46391591-46391610 None:intergenic 25.0%
! CAAAAATACTTACTCATGAA+AGG - chr4_1:46391672-46391691 None:intergenic 25.0%
!!! ATATCTGTCTTGCTTTTTAT+TGG + chr4_1:46391721-46391740 Msa0550820:CDS 25.0%
!!! TATCTGTCTTGCTTTTTATT+GGG + chr4_1:46391722-46391741 Msa0550820:CDS 25.0%
! ATTACTATCATCCCAAAAAA+TGG - chr4_1:46391841-46391860 None:intergenic 25.0%
! AGTAATCAGAAAAAAAAACC+TGG - chr4_1:46391986-46392005 None:intergenic 25.0%
! AATTGAAGTTACTCATTTCT+CGG - chr4_1:46392078-46392097 None:intergenic 25.0%
! AAGTATACAACCTTTCAAAT+AGG + chr4_1:46392151-46392170 Msa0550820:intron 25.0%
! TACATATTGAGATTGATCAA+AGG + chr4_1:46392199-46392218 Msa0550820:intron 25.0%
! AATCATCAACATAGAGAAAA+CGG - chr4_1:46392538-46392557 None:intergenic 25.0%
! ACCAATTCCATTTATAATAC+TGG - chr4_1:46392829-46392848 None:intergenic 25.0%
!! ATATAGAAGCTTTAACTCAT+GGG - chr4_1:46393023-46393042 None:intergenic 25.0%
!! TATATAGAAGCTTTAACTCA+TGG - chr4_1:46393024-46393043 None:intergenic 25.0%
! GATTAATTAATTATGATGCG+TGG - chr4_1:46393103-46393122 None:intergenic 25.0%
! ATTTGTGACATTGATGTTAA+AGG + chr4_1:46393319-46393338 Msa0550820:CDS 25.0%
! AACTGAAAATTCTGATGTTT+AGG + chr4_1:46393404-46393423 Msa0550820:intron 25.0%
! ATCAATGGGTACAAATAAAA+TGG + chr4_1:46393461-46393480 Msa0550820:CDS 25.0%
! ATAGTTACAAAATACAAGAC+AGG - chr4_1:46393510-46393529 None:intergenic 25.0%
! AAATGATCATCCTGTATATA+AGG - chr4_1:46393755-46393774 None:intergenic 25.0%
!! AAGATCATCTTTCTTTTTGA+AGG + chr4_1:46393818-46393837 Msa0550820:intron 25.0%
!! AGATCATCTTTCTTTTTGAA+GGG + chr4_1:46393819-46393838 Msa0550820:intron 25.0%
!!! AGAAATTTTCAAGTTTCCTT+TGG + chr4_1:46394113-46394132 Msa0550820:intron 25.0%
!! TGATAACAACTTGATCTTTT+AGG - chr4_1:46394606-46394625 None:intergenic 25.0%
! TTGAATTTAAAGGGAAGTAA+TGG - chr4_1:46394727-46394746 None:intergenic 25.0%
!! TTATTATAGACAAGTTGAAC+CGG - chr4_1:46394754-46394773 None:intergenic 25.0%
! TTTGAATGGTCTAGTATTAT+TGG + chr4_1:46395464-46395483 Msa0550820:CDS 25.0%
!! TAGCATTTTCTATGAATTCT+AGG - chr4_1:46395646-46395665 None:intergenic 25.0%
! CATATTGTGTTTATTAGGTT+CGG + chr4_1:46395697-46395716 Msa0550820:intron 25.0%
! AATGTACCATGAACTATAAA+TGG - chr4_1:46395829-46395848 None:intergenic 25.0%
! ATGGTACATTATACAAATAG+AGG + chr4_1:46395839-46395858 Msa0550820:three_prime_UTR 25.0%
! AAAAAGATATATGTTCAAGG+CGG - chr4_1:46396016-46396035 None:intergenic 25.0%
AAAGGAAAGAGAAAGAAAAC+GGG - chr4_1:46389631-46389650 None:intergenic 30.0%
CACTTCGAAGAAAACAAAAA+TGG + chr4_1:46389691-46389710 Msa0550820:exon 30.0%
GCGCAATTTCAACAATTAAA+CGG - chr4_1:46390154-46390173 None:intergenic 30.0%
!!! ATTTTGTTTTCTTCATGAGC+AGG + chr4_1:46390184-46390203 Msa0550820:intron 30.0%
TAATCACAAAAAACAGTAGC+AGG - chr4_1:46390211-46390230 None:intergenic 30.0%
TACATATGGCTAATGATCTA+AGG + chr4_1:46390416-46390435 Msa0550820:intron 30.0%
!!! TAAGGTTTTAGGTAGAAATG+TGG + chr4_1:46390434-46390453 Msa0550820:intron 30.0%
CTTTATATCGAAAGTCTTTC+TGG + chr4_1:46390579-46390598 Msa0550820:intron 30.0%
TGTGAGAAACTTACAATTGA+TGG + chr4_1:46390651-46390670 Msa0550820:intron 30.0%
GTGAGAAACTTACAATTGAT+GGG + chr4_1:46390652-46390671 Msa0550820:intron 30.0%
AATGAAAAGAGAGAAAAAGG+AGG - chr4_1:46390787-46390806 None:intergenic 30.0%
! TCCTTTTTCTCTCTTTTCAT+TGG + chr4_1:46390786-46390805 Msa0550820:intron 30.0%
ACCAATGAAAAGAGAGAAAA+AGG - chr4_1:46390790-46390809 None:intergenic 30.0%
CAAAAACCTAAGATCAGTTT+GGG + chr4_1:46390893-46390912 Msa0550820:intron 30.0%
GAAAAAAGGAATGAGAAAGT+GGG + chr4_1:46390943-46390962 Msa0550820:intron 30.0%
!!! ACTGCAATTTTCAAGTTCAT+GGG - chr4_1:46391035-46391054 None:intergenic 30.0%
! AGTAATTAGTTGTTACTTGC+TGG + chr4_1:46391239-46391258 Msa0550820:intron 30.0%
ATTCAACTAATTTGAGCCAA+GGG - chr4_1:46391322-46391341 None:intergenic 30.0%
AATTCAACTAATTTGAGCCA+AGG - chr4_1:46391323-46391342 None:intergenic 30.0%
! AAATGCTTTAGGTTCTGTTT+GGG - chr4_1:46391377-46391396 None:intergenic 30.0%
ACTCGTATATCAAATGCTTT+AGG - chr4_1:46391388-46391407 None:intergenic 30.0%
! ATCTGAAGCAATCTATGATT+AGG + chr4_1:46391523-46391542 Msa0550820:intron 30.0%
!!! CAAAAAATTCACTGGTCTTT+TGG - chr4_1:46391583-46391602 None:intergenic 30.0%
! TTTATGCACACAGAACTTTT+AGG + chr4_1:46391632-46391651 Msa0550820:intron 30.0%
AAATACTTACTCATGAAAGG+CGG - chr4_1:46391669-46391688 None:intergenic 30.0%
!! TATTTTTGTGTAGAATAGGG+AGG + chr4_1:46391684-46391703 Msa0550820:intron 30.0%
!!! ATCAGTTGTGTCCATTTTTT+GGG + chr4_1:46391827-46391846 Msa0550820:intron 30.0%
GTAATTCACCAATGCATAAA+TGG + chr4_1:46391856-46391875 Msa0550820:intron 30.0%
CTCTATTACCATTTATGCAT+TGG - chr4_1:46391867-46391886 None:intergenic 30.0%
TAGAACAATTCATCAGACAT+GGG - chr4_1:46391895-46391914 None:intergenic 30.0%
ATAGAACAATTCATCAGACA+TGG - chr4_1:46391896-46391915 None:intergenic 30.0%
GGTACTATATGTACATTCTT+TGG - chr4_1:46391945-46391964 None:intergenic 30.0%
AAAGCAGAATCCTATTTGAA+AGG - chr4_1:46392164-46392183 None:intergenic 30.0%
TATTGAGATTGATCAAAGGA+AGG + chr4_1:46392203-46392222 Msa0550820:intron 30.0%
! TAGTAACACTGGATTTCTTT+TGG + chr4_1:46392245-46392264 Msa0550820:intron 30.0%
! TTCTTTTGGTATTAGATTCG+AGG + chr4_1:46392259-46392278 Msa0550820:intron 30.0%
! TCTTTTGGTATTAGATTCGA+GGG + chr4_1:46392260-46392279 Msa0550820:intron 30.0%
! AATAGCTGCTTAGAAACTTT+TGG + chr4_1:46392452-46392471 Msa0550820:intron 30.0%
!!! AATGACTTTTTCAGATAGCA+AGG + chr4_1:46392495-46392514 Msa0550820:intron 30.0%
GAAAACGGTATTAAGACAAA+AGG - chr4_1:46392523-46392542 None:intergenic 30.0%
GCCAGTATTATAAATGGAAT+TGG + chr4_1:46392825-46392844 Msa0550820:CDS 30.0%
ATAATTCTGTGCAGATACTT+AGG + chr4_1:46392852-46392871 Msa0550820:CDS 30.0%
AGATAATGAATTAGGGTTGT+AGG + chr4_1:46392949-46392968 Msa0550820:intron 30.0%
TAGTTTCGTGCATTGAAAAT+AGG - chr4_1:46393144-46393163 None:intergenic 30.0%
AACATCAATGTCACAAATAC+AGG - chr4_1:46393317-46393336 None:intergenic 30.0%
TGAAAATTCTGATGTTTAGG+TGG + chr4_1:46393407-46393426 Msa0550820:intron 30.0%
TACATGTTATGCACAATATG+TGG + chr4_1:46393615-46393634 Msa0550820:CDS 30.0%
CATAAATGATTGAGCAGTTT+GGG - chr4_1:46393652-46393671 None:intergenic 30.0%
! AGTTGATGTATGGAGTAAAT+CGG + chr4_1:46393676-46393695 Msa0550820:CDS 30.0%
GTCAAGATACTATAAACTCA+GGG - chr4_1:46393932-46393951 None:intergenic 30.0%
TGTCAAGATACTATAAACTC+AGG - chr4_1:46393933-46393952 None:intergenic 30.0%
TGAGTTTATAGTATCTTGAC+AGG + chr4_1:46393932-46393951 Msa0550820:intron 30.0%
TGATCAGGTGTAAAAATGTA+GGG - chr4_1:46394047-46394066 None:intergenic 30.0%
!! TCAAGTTTCCTTTGGAATTA+AGG + chr4_1:46394121-46394140 Msa0550820:intron 30.0%
AAAAATCTTAGGCCAAGTAA+TGG - chr4_1:46394358-46394377 None:intergenic 30.0%
CCTACTTATTTAGGTAGAAT+GGG + chr4_1:46394517-46394536 Msa0550820:intron 30.0%
CTACTTATTTAGGTAGAATG+GGG + chr4_1:46394518-46394537 Msa0550820:intron 30.0%
CTACCAAATAGTTAAGAGTT+AGG - chr4_1:46394555-46394574 None:intergenic 30.0%
!! GAGGTTTTACATTGATAACT+CGG + chr4_1:46394629-46394648 Msa0550820:intron 30.0%
!! TTTTACATTGATAACTCGGA+GGG + chr4_1:46394633-46394652 Msa0550820:intron 30.0%
! TATTATAGACAAGTTGAACC+GGG - chr4_1:46394753-46394772 None:intergenic 30.0%
CTTATTCATGTAGATGTCTA+AGG + chr4_1:46394813-46394832 Msa0550820:intron 30.0%
!! TTAGGGTTAACTTGTAACAA+CGG + chr4_1:46395086-46395105 Msa0550820:intron 30.0%
AGTCTCATATCAACTATGAA+CGG + chr4_1:46395173-46395192 Msa0550820:intron 30.0%
! TAATGCCTTAAACTTTTGAG+TGG + chr4_1:46395239-46395258 Msa0550820:intron 30.0%
! TCTAGGATTAACATGAGATT+GGG - chr4_1:46395276-46395295 None:intergenic 30.0%
! ATCTAGGATTAACATGAGAT+TGG - chr4_1:46395277-46395296 None:intergenic 30.0%
AATAAGTTGTCATGACTGTT+GGG - chr4_1:46395335-46395354 None:intergenic 30.0%
AAATAAGTTGTCATGACTGT+TGG - chr4_1:46395336-46395355 None:intergenic 30.0%
TTGTCTATATTTGCTTATGC+AGG + chr4_1:46395392-46395411 Msa0550820:intron 30.0%
TTTATAAGCTTGTCAATGAC+TGG + chr4_1:46395432-46395451 Msa0550820:CDS 30.0%
!! TATTGGTAACAACTTTTCCT+TGG + chr4_1:46395481-46395500 Msa0550820:intron 30.0%
AGGGACATATTGTGTTTATT+AGG + chr4_1:46395692-46395711 Msa0550820:intron 30.0%
! GAATTGTATCGACATTAAGA+TGG - chr4_1:46395916-46395935 None:intergenic 30.0%
CGCAAAAAGATATATGTTCA+AGG - chr4_1:46396019-46396038 None:intergenic 30.0%
!! GGTAAACCTTTCTACTTTTA+TGG + chr4_1:46396071-46396090 Msa0550820:three_prime_UTR 30.0%
!! AAACCTTTCTACTTTTATGG+TGG + chr4_1:46396074-46396093 Msa0550820:three_prime_UTR 30.0%
!! TACTCTCCTCTATTTCTAAA+TGG - chr4_1:46396105-46396124 None:intergenic 30.0%
AGTAAATATGTTCTCGTTCT+TGG + chr4_1:46396121-46396140 Msa0550820:three_prime_UTR 30.0%
! TCAAAAATGACTTGTAAGGT+AGG + chr4_1:46396153-46396172 Msa0550820:three_prime_UTR 30.0%
AGATGTGTTCTTCTTGAGAA+GGG - chr4_1:46389795-46389814 None:intergenic 35.0%
TAGATGTGTTCTTCTTGAGA+AGG - chr4_1:46389796-46389815 None:intergenic 35.0%
TCGAGGATGTAATAATGCAT+TGG - chr4_1:46389832-46389851 None:intergenic 35.0%
AGAACAAGAAGAAGAAGTGA+AGG + chr4_1:46389952-46389971 Msa0550820:CDS 35.0%
GAGTATATGGATTCAGATGA+AGG + chr4_1:46389988-46390007 Msa0550820:CDS 35.0%
GTATCAATGAGACTCATCAA+CGG - chr4_1:46390061-46390080 None:intergenic 35.0%
!! TCAATTGAACTTGCTGCTTT+AGG + chr4_1:46390103-46390122 Msa0550820:CDS 35.0%
! GTCGATTGCTACTTCAAATA+TGG + chr4_1:46390255-46390274 Msa0550820:CDS 35.0%
TGCATTTCTGAACAGATAGT+TGG + chr4_1:46390352-46390371 Msa0550820:intron 35.0%
! AGTTGGTATTCAAATATGGG+TGG + chr4_1:46390369-46390388 Msa0550820:intron 35.0%
ACTGGTTGAGATGATACATA+TGG + chr4_1:46390402-46390421 Msa0550820:intron 35.0%
!! GGCTAATGATCTAAGGTTTT+AGG + chr4_1:46390423-46390442 Msa0550820:intron 35.0%
! TAGGTAGAAATGTGGTGTTT+TGG + chr4_1:46390442-46390461 Msa0550820:intron 35.0%
CAAGTTAATCATCAGGATTC+TGG - chr4_1:46390480-46390499 None:intergenic 35.0%
GCAACAACAAGTTAATCATC+AGG - chr4_1:46390487-46390506 None:intergenic 35.0%
ACTCTCCTATCAAGTTAACT+TGG - chr4_1:46390549-46390568 None:intergenic 35.0%
ACAATTGATGGGAAGATTGT+TGG + chr4_1:46390663-46390682 Msa0550820:intron 35.0%
AACAATGGAGAGAGAAAAAG+TGG + chr4_1:46390814-46390833 Msa0550820:intron 35.0%
GAAAAAGTGGATCATCACAT+TGG + chr4_1:46390827-46390846 Msa0550820:intron 35.0%
! CCAAACTGATCTTAGGTTTT+TGG - chr4_1:46390895-46390914 None:intergenic 35.0%
CCAAAAACCTAAGATCAGTT+TGG + chr4_1:46390892-46390911 Msa0550820:intron 35.0%
TAAACTCCCAAACTGATCTT+AGG - chr4_1:46390902-46390921 None:intergenic 35.0%
ATCAGTTTGGGAGTTTAAGA+CGG + chr4_1:46390905-46390924 Msa0550820:intron 35.0%
GGAAAAAAGGAATGAGAAAG+TGG + chr4_1:46390942-46390961 Msa0550820:intron 35.0%
!!! CTGCAATTTTCAAGTTCATG+GGG - chr4_1:46391034-46391053 None:intergenic 35.0%
!!! CACTGCAATTTTCAAGTTCA+TGG - chr4_1:46391036-46391055 None:intergenic 35.0%
!!! TTTTTTTCTCTCTTTCGTCC+AGG + chr4_1:46391267-46391286 Msa0550820:intron 35.0%
ATAAAGGAATTGGAGGTCAT+GGG - chr4_1:46391299-46391318 None:intergenic 35.0%
TAATTTGAGCCAAGGGATAA+AGG - chr4_1:46391315-46391334 None:intergenic 35.0%
! CAAATGCTTTAGGTTCTGTT+TGG - chr4_1:46391378-46391397 None:intergenic 35.0%
AATACTTACTCATGAAAGGC+GGG - chr4_1:46391668-46391687 None:intergenic 35.0%
!!! CTTTTTATTGGGTTAGCATG+TGG + chr4_1:46391733-46391752 Msa0550820:CDS 35.0%
!!! GATCAGTTGTGTCCATTTTT+TGG + chr4_1:46391826-46391845 Msa0550820:intron 35.0%
AGAACAATTCATCAGACATG+GGG - chr4_1:46391894-46391913 None:intergenic 35.0%
! AGTGTTACTAAATCAAGCAG+AGG - chr4_1:46392235-46392254 None:intergenic 35.0%
TCTGCTTGATTTAGTAACAC+TGG + chr4_1:46392234-46392253 Msa0550820:intron 35.0%
TCTTGGTATGAAGGATTCTT+GGG + chr4_1:46392779-46392798 Msa0550820:CDS 35.0%
! ACATAATGCACGAGTTTGTT+CGG - chr4_1:46392926-46392945 None:intergenic 35.0%
AACAACCTGAAAACAAGAAG+GGG - chr4_1:46393189-46393208 None:intergenic 35.0%
CAACAACCTGAAAACAAGAA+GGG - chr4_1:46393190-46393209 None:intergenic 35.0%
!!! TTCTTGTTTTCAGGTTGTTG+CGG + chr4_1:46393190-46393209 Msa0550820:intron 35.0%
TGTGTTTGTAGCTCTTTATC+TGG + chr4_1:46393360-46393379 Msa0550820:intron 35.0%
GAAAATTTGATAGACAGCGA+AGG - chr4_1:46393534-46393553 None:intergenic 35.0%
GCATAAATGATTGAGCAGTT+TGG - chr4_1:46393653-46393672 None:intergenic 35.0%
!! TTTATGCCTGAGTTGATGTA+TGG + chr4_1:46393666-46393685 Msa0550820:CDS 35.0%
TTTACTCCATACATCAACTC+AGG - chr4_1:46393675-46393694 None:intergenic 35.0%
AGTAAATCGGAGTTTGGTAA+AGG + chr4_1:46393689-46393708 Msa0550820:CDS 35.0%
ATCTCTCCAACCTTATATAC+AGG + chr4_1:46393742-46393761 Msa0550820:intron 35.0%
GATCATCCTGTATATAAGGT+TGG - chr4_1:46393751-46393770 None:intergenic 35.0%
TTATAGTATCTTGACAGGCT+CGG + chr4_1:46393937-46393956 Msa0550820:intron 35.0%
CTAAGGTCTCTTCTAACTAT+TGG + chr4_1:46393966-46393985 Msa0550820:CDS 35.0%
AAAATGTAGGGGAATAACCA+AGG - chr4_1:46394035-46394054 None:intergenic 35.0%
GATCAGGTGTAAAAATGTAG+GGG - chr4_1:46394046-46394065 None:intergenic 35.0%
CTGATCAGGTGTAAAAATGT+AGG - chr4_1:46394048-46394067 None:intergenic 35.0%
! CATTTTTACACCTGATCAGA+TGG + chr4_1:46394049-46394068 Msa0550820:CDS 35.0%
AACAGAAGCCTTAATTCCAA+AGG - chr4_1:46394132-46394151 None:intergenic 35.0%
!! TCCATACTTTTTAGCGCTAA+TGG + chr4_1:46394199-46394218 Msa0550820:CDS 35.0%
ACCATTAGCGCTAAAAAGTA+TGG - chr4_1:46394203-46394222 None:intergenic 35.0%
!! TGTTGGTAGTCTTATTCAGT+TGG + chr4_1:46394313-46394332 Msa0550820:intron 35.0%
CATTCTACTAGACCATTACT+TGG + chr4_1:46394343-46394362 Msa0550820:intron 35.0%
!! AACGTATTAGGCTTTTCAAG+AGG - chr4_1:46394409-46394428 None:intergenic 35.0%
AAGCCTAATACGTTTCACAT+AGG + chr4_1:46394415-46394434 Msa0550820:intron 35.0%
GAACCTATGTGAAACGTATT+AGG - chr4_1:46394421-46394440 None:intergenic 35.0%
AGGTACAAGCCTACTTATTT+AGG + chr4_1:46394508-46394527 Msa0550820:intron 35.0%
GCCTACTTATTTAGGTAGAA+TGG + chr4_1:46394516-46394535 Msa0550820:intron 35.0%
CCCATTCTACCTAAATAAGT+AGG - chr4_1:46394520-46394539 None:intergenic 35.0%
GCACCTAACTCTTAACTATT+TGG + chr4_1:46394549-46394568 Msa0550820:intron 35.0%
!! ACTTGATCTTTTAGGAGAAC+TGG - chr4_1:46394598-46394617 None:intergenic 35.0%
! GATCAAGTTGTTATCAAGAG+AGG + chr4_1:46394610-46394629 Msa0550820:intron 35.0%
!! GTTTTACATTGATAACTCGG+AGG + chr4_1:46394632-46394651 Msa0550820:intron 35.0%
! TTTACATTGATAACTCGGAG+GGG + chr4_1:46394634-46394653 Msa0550820:intron 35.0%
TCCCTTTAAATTCAATAGCC+CGG + chr4_1:46394732-46394751 Msa0550820:intron 35.0%
ACCGGGCTATTGAATTTAAA+GGG - chr4_1:46394736-46394755 None:intergenic 35.0%
AACCGGGCTATTGAATTTAA+AGG - chr4_1:46394737-46394756 None:intergenic 35.0%
! TATCAGATCTTGTTTCAGCT+TGG + chr4_1:46394982-46395001 Msa0550820:intron 35.0%
TGTATCGAAAGTCTTTCTAG+CGG + chr4_1:46395041-46395060 Msa0550820:intron 35.0%
GATGTGAAACTTACACTTGA+GGG + chr4_1:46395120-46395139 Msa0550820:intron 35.0%
ATGTGAAACTTACACTTGAG+GGG + chr4_1:46395121-46395140 Msa0550820:intron 35.0%
GTCTCATATCAACTATGAAC+GGG + chr4_1:46395174-46395193 Msa0550820:intron 35.0%
ACTATGAACGGGATAAATGT+TGG + chr4_1:46395185-46395204 Msa0550820:intron 35.0%
CATCTCCACTCAAAAGTTTA+AGG - chr4_1:46395247-46395266 None:intergenic 35.0%
!! TAAACTTTTGAGTGGAGATG+TGG + chr4_1:46395247-46395266 Msa0550820:intron 35.0%
CAATAACAGGCTAATGATCT+AGG - chr4_1:46395293-46395312 None:intergenic 35.0%
ATAAGTTGTCATGACTGTTG+GGG - chr4_1:46395334-46395353 None:intergenic 35.0%
TATTTATCCAGGTTGCATGT+TGG + chr4_1:46395359-46395378 Msa0550820:intron 35.0%
!! ACTGGATGCTTTTGTTTGAA+TGG + chr4_1:46395450-46395469 Msa0550820:CDS 35.0%
TTTCGTGAACATATTCTGAC+AGG + chr4_1:46395672-46395691 Msa0550820:intron 35.0%
TTCGTGAACATATTCTGACA+GGG + chr4_1:46395673-46395692 Msa0550820:intron 35.0%
! TCCCAATGGCATTTTATACT+CGG + chr4_1:46395749-46395768 Msa0550820:CDS 35.0%
TCCGAGTATAAAATGCCATT+GGG - chr4_1:46395753-46395772 None:intergenic 35.0%
TTCCGAGTATAAAATGCCAT+TGG - chr4_1:46395754-46395773 None:intergenic 35.0%
AGTTGAAGACTGCATAGTTT+AGG + chr4_1:46395799-46395818 Msa0550820:exon 35.0%
GGAGTTCCATTTATAGTTCA+TGG + chr4_1:46395820-46395839 Msa0550820:three_prime_UTR 35.0%
TGTCGATACAATTCAGTACT+CGG + chr4_1:46395922-46395941 Msa0550820:three_prime_UTR 35.0%
! TATCTTTTTGCGATCAAGTG+TGG + chr4_1:46396027-46396046 Msa0550820:three_prime_UTR 35.0%
TACCAAATAACTATACCCAG+TGG - chr4_1:46396055-46396074 None:intergenic 35.0%
AAGCCACCATAAAAGTAGAA+AGG - chr4_1:46396080-46396099 None:intergenic 35.0%
! GCTTTGCCATTTAGAAATAG+AGG + chr4_1:46396096-46396115 Msa0550820:three_prime_UTR 35.0%
ATGTTCTCGTTCTTGGAATT+TGG + chr4_1:46396128-46396147 Msa0550820:three_prime_UTR 35.0%
TGTTCTCGTTCTTGGAATTT+GGG + chr4_1:46396129-46396148 Msa0550820:three_prime_UTR 35.0%
! GGGTTCAAAAATGACTTGTA+AGG + chr4_1:46396149-46396168 Msa0550820:three_prime_UTR 35.0%
AAATCATCTGTAGATGGGAA+TGG - chr4_1:46396262-46396281 None:intergenic 35.0%
TCTGTAACATTGAAATCCGC+GGG - chr4_1:46389605-46389624 None:intergenic 40.0%
GTCTGTAACATTGAAATCCG+CGG - chr4_1:46389606-46389625 None:intergenic 40.0%
!! AATTGGGAAGATGACGGAAA+AGG - chr4_1:46389649-46389668 None:intergenic 40.0%
AGAAGAAGAAGTGAAGGAAC+TGG + chr4_1:46389958-46389977 Msa0550820:CDS 40.0%
AACTGGTTGAGCAGAGTATA+TGG + chr4_1:46389975-46389994 Msa0550820:CDS 40.0%
TTGTTTACTGGACCTGCTAT+TGG + chr4_1:46390019-46390038 Msa0550820:CDS 40.0%
CATAACCAAAGACCAATAGC+AGG - chr4_1:46390034-46390053 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+TGG + chr4_1:46390034-46390053 Msa0550820:CDS 40.0%
CTCATTGATACTGCTGTTGT+TGG + chr4_1:46390070-46390089 Msa0550820:CDS 40.0%
TTGTTGCTCTCTCTGTTTCA+CGG + chr4_1:46390500-46390519 Msa0550820:intron 40.0%
! CAGAGCCAAGTTAACTTGAT+AGG + chr4_1:46390541-46390560 Msa0550820:intron 40.0%
! CTCGTTGGTTAGTAATGGTA+GGG + chr4_1:46390616-46390635 Msa0550820:intron 40.0%
! TCAGTTTGGGAGTTTAAGAC+GGG + chr4_1:46390906-46390925 Msa0550820:intron 40.0%
GAATGAGAAAGTGGGATATG+TGG + chr4_1:46390951-46390970 Msa0550820:intron 40.0%
GATAAAGGAATTGGAGGTCA+TGG - chr4_1:46391300-46391319 None:intergenic 40.0%
GACCTATATACACCCAACAA+TGG + chr4_1:46391485-46391504 Msa0550820:intron 40.0%
TGCCATTGTTGGGTGTATAT+AGG - chr4_1:46391490-46391509 None:intergenic 40.0%
GAGGTGGTACATAGCAATAA+TGG - chr4_1:46391606-46391625 None:intergenic 40.0%
ATTGCTATGTACCACCTCTA+TGG + chr4_1:46391608-46391627 Msa0550820:intron 40.0%
ATACTTACTCATGAAAGGCG+GGG - chr4_1:46391667-46391686 None:intergenic 40.0%
! TTGCCCTTTTCAGCTTTTAC+TGG + chr4_1:46391918-46391937 Msa0550820:intron 40.0%
GGTCCAGTAAAAGCTGAAAA+GGG - chr4_1:46391924-46391943 None:intergenic 40.0%
TGGTCCAGTAAAAGCTGAAA+AGG - chr4_1:46391925-46391944 None:intergenic 40.0%
TGGACATAAGTATTAGCTGC+GGG - chr4_1:46391966-46391985 None:intergenic 40.0%
CTGGACATAAGTATTAGCTG+CGG - chr4_1:46391967-46391986 None:intergenic 40.0%
TTGGTATTAGATTCGAGGGT+TGG + chr4_1:46392264-46392283 Msa0550820:intron 40.0%
!! CATGGCCTTGTTTACTTGTT+GGG + chr4_1:46392287-46392306 Msa0550820:CDS 40.0%
ATCGACCCAACAAGTAAACA+AGG - chr4_1:46392295-46392314 None:intergenic 40.0%
ATGTTTGCACCTTGCACTTT+GGG - chr4_1:46392320-46392339 None:intergenic 40.0%
TATGTTTGCACCTTGCACTT+TGG - chr4_1:46392321-46392340 None:intergenic 40.0%
TAGGCATTAAGAACAGAGAG+AGG - chr4_1:46392601-46392620 None:intergenic 40.0%
CAAGACTGCATGAAAGAATG+TGG - chr4_1:46392764-46392783 None:intergenic 40.0%
CACATTCTTTCATGCAGTCT+TGG + chr4_1:46392762-46392781 Msa0550820:intron 40.0%
TTCATGCAGTCTTGGTATGA+AGG + chr4_1:46392770-46392789 Msa0550820:intron 40.0%
GTCTTGGTATGAAGGATTCT+TGG + chr4_1:46392778-46392797 Msa0550820:intron 40.0%
CTTGGTATGAAGGATTCTTG+GGG + chr4_1:46392780-46392799 Msa0550820:CDS 40.0%
GCTGCTGCCAGTATTATAAA+TGG + chr4_1:46392819-46392838 Msa0550820:CDS 40.0%
TGTGCAGATACTTAGGCTAT+GGG + chr4_1:46392859-46392878 Msa0550820:CDS 40.0%
!!! TTACACCCCTTCTTGTTTTC+AGG + chr4_1:46393181-46393200 Msa0550820:intron 40.0%
GCAACAACCTGAAAACAAGA+AGG - chr4_1:46393191-46393210 None:intergenic 40.0%
AGCCAAACTCTAAACGAGAA+GGG + chr4_1:46393224-46393243 Msa0550820:CDS 40.0%
! ATCCCTTCTCGTTTAGAGTT+TGG - chr4_1:46393229-46393248 None:intergenic 40.0%
AAATTCCTTCCCTGAAGGAA+TGG - chr4_1:46393270-46393289 None:intergenic 40.0%
GTATGGAGTAAATCGGAGTT+TGG + chr4_1:46393683-46393702 Msa0550820:CDS 40.0%
CTAACTATTGGAGCTGTACT+CGG + chr4_1:46393978-46393997 Msa0550820:CDS 40.0%
TAACTATTGGAGCTGTACTC+GGG + chr4_1:46393979-46393998 Msa0550820:CDS 40.0%
TTGTTGGAACATCTGTTCCT+TGG + chr4_1:46394015-46394034 Msa0550820:CDS 40.0%
TAATTCAAGAACTGACCTCC+TGG - chr4_1:46394079-46394098 None:intergenic 40.0%
GGAATTAAGGCTTCTGTTAG+TGG + chr4_1:46394134-46394153 Msa0550820:intron 40.0%
!! ATTAGGCTTTTCAAGAGGCT+TGG - chr4_1:46394404-46394423 None:intergenic 40.0%
TACGTTTCACATAGGTTCCA+TGG + chr4_1:46394423-46394442 Msa0550820:intron 40.0%
TGTTATAGCCTTTGCACTTG+AGG + chr4_1:46394476-46394495 Msa0550820:intron 40.0%
!! CTTTTAGGAGAACTGGATCT+TGG - chr4_1:46394591-46394610 None:intergenic 40.0%
AGATCTGATACCCACTTGTT+GGG - chr4_1:46394972-46394991 None:intergenic 40.0%
AAGATCTGATACCCACTTGT+TGG - chr4_1:46394973-46394992 None:intergenic 40.0%
! TTAGGAGGCGTATTTCGTTA+GGG + chr4_1:46395069-46395088 Msa0550820:intron 40.0%
TGTAACAACGGTGCAAGTAT+AGG + chr4_1:46395098-46395117 Msa0550820:intron 40.0%
GGATGTGAAACTTACACTTG+AGG + chr4_1:46395119-46395138 Msa0550820:intron 40.0%
CTATATTTGCTTATGCAGGC+TGG + chr4_1:46395396-46395415 Msa0550820:intron 40.0%
!!! ACAACTTTTCCTTGGTTTGC+TGG + chr4_1:46395489-46395508 Msa0550820:intron 40.0%
GATCTGCATCGAGGTAAATT+GGG - chr4_1:46395554-46395573 None:intergenic 40.0%
CAGATCCTATCTAGCAGATA+TGG + chr4_1:46395568-46395587 Msa0550820:intron 40.0%
GCAAACCATATCTGCTAGAT+AGG - chr4_1:46395576-46395595 None:intergenic 40.0%
! TCTAGCAGATATGGTTTGCA+AGG + chr4_1:46395577-46395596 Msa0550820:CDS 40.0%
TTTCCCTTGCTGGATTTCAA+TGG + chr4_1:46395608-46395627 Msa0550820:CDS 40.0%
TTCCCTTGCTGGATTTCAAT+GGG + chr4_1:46395609-46395628 Msa0550820:CDS 40.0%
TACCCATTGAAATCCAGCAA+GGG - chr4_1:46395614-46395633 None:intergenic 40.0%
TTACCCATTGAAATCCAGCA+AGG - chr4_1:46395615-46395634 None:intergenic 40.0%
TTGCTGGATTTCAATGGGTA+AGG + chr4_1:46395614-46395633 Msa0550820:intron 40.0%
AAATGCCATTGGGAGATAGA+AGG - chr4_1:46395743-46395762 None:intergenic 40.0%
! TCAACTTTTGCAGCTCATAC+TGG - chr4_1:46395785-46395804 None:intergenic 40.0%
ATTCAGTACTCGGAAACTAC+AGG + chr4_1:46395932-46395951 Msa0550820:three_prime_UTR 40.0%
GAGTTGTATCGGAAACTAAG+CGG + chr4_1:46395959-46395978 Msa0550820:three_prime_UTR 40.0%
AGTTGTATCGGAAACTAAGC+GGG + chr4_1:46395960-46395979 Msa0550820:three_prime_UTR 40.0%
AAGATATATGTTCAAGGCGG+TGG - chr4_1:46396013-46396032 None:intergenic 40.0%
TGCCACTGGGTATAGTTATT+TGG + chr4_1:46396050-46396069 Msa0550820:three_prime_UTR 40.0%
! TGACTTGTAAGGTAGGAATG+TGG + chr4_1:46396160-46396179 Msa0550820:three_prime_UTR 40.0%
GGAAAGAGAAAGAAAACGGG+TGG - chr4_1:46389628-46389647 None:intergenic 45.0%
TCTTCTTGAGAAGGGAGGAT+GGG - chr4_1:46389787-46389806 None:intergenic 45.0%
TTCTTCTTGAGAAGGGAGGA+TGG - chr4_1:46389788-46389807 None:intergenic 45.0%
TGTGTTCTTCTTGAGAAGGG+AGG - chr4_1:46389792-46389811 None:intergenic 45.0%
GCATTATTACATCCTCGAGC+CGG + chr4_1:46389834-46389853 Msa0550820:CDS 45.0%
CTTGTTCTTCAACACACTCG+TGG - chr4_1:46389940-46389959 None:intergenic 45.0%
GATACTGCTGTTGTTGGTCA+AGG + chr4_1:46390076-46390095 Msa0550820:CDS 45.0%
! TGCTACTGCACTTGCTAAAC+AGG + chr4_1:46390279-46390298 Msa0550820:CDS 45.0%
GTAATGTAGTCGTTGCTCGT+TGG + chr4_1:46390601-46390620 Msa0550820:intron 45.0%
! CGTTGCTCGTTGGTTAGTAA+TGG + chr4_1:46390611-46390630 Msa0550820:intron 45.0%
! GCTCGTTGGTTAGTAATGGT+AGG + chr4_1:46390615-46390634 Msa0550820:intron 45.0%
! TGCTTAGCCTTCTATCGACT+AGG + chr4_1:46390698-46390717 Msa0550820:intron 45.0%
GTCAGTTCCTAGTCGATAGA+AGG - chr4_1:46390708-46390727 None:intergenic 45.0%
TGATGTCCAACTCACTTGTG+TGG - chr4_1:46390864-46390883 None:intergenic 45.0%
! TTTGGGAGTTTAAGACGGGA+GGG + chr4_1:46390910-46390929 Msa0550820:intron 45.0%
TGAGAAAGTGGGATATGTGG+AGG + chr4_1:46390954-46390973 Msa0550820:intron 45.0%
GAGAAAGTGGGATATGTGGA+GGG + chr4_1:46390955-46390974 Msa0550820:intron 45.0%
CCAAGGGATAAAGGAATTGG+AGG - chr4_1:46391306-46391325 None:intergenic 45.0%
CCTCCAATTCCTTTATCCCT+TGG + chr4_1:46391303-46391322 Msa0550820:intron 45.0%
GAGCCAAGGGATAAAGGAAT+TGG - chr4_1:46391309-46391328 None:intergenic 45.0%
! CTTTAGGTTCTGTTTGGGAG+GGG - chr4_1:46391372-46391391 None:intergenic 45.0%
! GCTTTAGGTTCTGTTTGGGA+GGG - chr4_1:46391373-46391392 None:intergenic 45.0%
! TGCTTTAGGTTCTGTTTGGG+AGG - chr4_1:46391374-46391393 None:intergenic 45.0%
ATCCTCAGCTTGCCATTGTT+GGG - chr4_1:46391500-46391519 None:intergenic 45.0%
TATCCTCAGCTTGCCATTGT+TGG - chr4_1:46391501-46391520 None:intergenic 45.0%
TGTGCATAAAGCCATAGAGG+TGG - chr4_1:46391622-46391641 None:intergenic 45.0%
CTGTGTGCATAAAGCCATAG+AGG - chr4_1:46391625-46391644 None:intergenic 45.0%
TACTTACTCATGAAAGGCGG+GGG - chr4_1:46391666-46391685 None:intergenic 45.0%
!! TATTGGGTTAGCATGTGGCT+TGG + chr4_1:46391738-46391757 Msa0550820:CDS 45.0%
CAATTCATCAGACATGGGGT+AGG - chr4_1:46391890-46391909 None:intergenic 45.0%
CGCAGCTAATACTTATGTCC+AGG + chr4_1:46391965-46391984 Msa0550820:CDS 45.0%
! ATTAGATTCGAGGGTTGGCA+TGG + chr4_1:46392269-46392288 Msa0550820:intron 45.0%
!! GCATGGCCTTGTTTACTTGT+TGG + chr4_1:46392286-46392305 Msa0550820:CDS 45.0%
CTGTGCAGATACTTAGGCTA+TGG + chr4_1:46392858-46392877 Msa0550820:CDS 45.0%
TACTTAGGCTATGGGATTGC+TGG + chr4_1:46392867-46392886 Msa0550820:CDS 45.0%
ACTTAGGCTATGGGATTGCT+GGG + chr4_1:46392868-46392887 Msa0550820:CDS 45.0%
! CGAGTTTGTTCGGCATACTT+GGG - chr4_1:46392916-46392935 None:intergenic 45.0%
! ACGAGTTTGTTCGGCATACT+TGG - chr4_1:46392917-46392936 None:intergenic 45.0%
GAGCCAAACTCTAAACGAGA+AGG + chr4_1:46393223-46393242 Msa0550820:CDS 45.0%
TTTGCCTTCACCATTCCTTC+AGG + chr4_1:46393257-46393276 Msa0550820:CDS 45.0%
TTGCCTTCACCATTCCTTCA+GGG + chr4_1:46393258-46393277 Msa0550820:CDS 45.0%
GACAGAAATTCCTTCCCTGA+AGG - chr4_1:46393275-46393294 None:intergenic 45.0%
! GATTGAGCAGTTTGGGATAG+AGG - chr4_1:46393645-46393664 None:intergenic 45.0%
!!! CTGTACTCGGGTTGCTTTTT+GGG + chr4_1:46393991-46394010 Msa0550820:CDS 45.0%
!!! GGGTTGCTTTTTGGGATTGT+TGG + chr4_1:46393999-46394018 Msa0550820:CDS 45.0%
ACCTGATCAGATGGTTATCC+AGG + chr4_1:46394058-46394077 Msa0550820:CDS 45.0%
TCCTGGATAACCATCTGATC+AGG - chr4_1:46394062-46394081 None:intergenic 45.0%
TGATCAGATGGTTATCCAGG+AGG + chr4_1:46394061-46394080 Msa0550820:CDS 45.0%
! ATCTGATACCCACTTGTTGG+GGG - chr4_1:46394970-46394989 None:intergenic 45.0%
! GATCTGATACCCACTTGTTG+GGG - chr4_1:46394971-46394990 None:intergenic 45.0%
! CAGATCTTGTTTCAGCTTGG+CGG + chr4_1:46394985-46395004 Msa0550820:intron 45.0%
! AGATCTTGTTTCAGCTTGGC+GGG + chr4_1:46394986-46395005 Msa0550820:intron 45.0%
! GTCTTTCTAGCGGTGTAGTT+AGG + chr4_1:46395051-46395070 Msa0550820:intron 45.0%
! TTTCTAGCGGTGTAGTTAGG+AGG + chr4_1:46395054-46395073 Msa0550820:intron 45.0%
! GTTAGGAGGCGTATTTCGTT+AGG + chr4_1:46395068-46395087 Msa0550820:intron 45.0%
! ACACTTGAGGGGCATATTCT+TGG + chr4_1:46395132-46395151 Msa0550820:intron 45.0%
! CACTTGAGGGGCATATTCTT+GGG + chr4_1:46395133-46395152 Msa0550820:intron 45.0%
TTCTTGGGTTCAAGTGTGAG+TGG + chr4_1:46395148-46395167 Msa0550820:intron 45.0%
ACAAGAACCAACATGCAACC+TGG - chr4_1:46395369-46395388 None:intergenic 45.0%
ATTTGCTTATGCAGGCTGGA+CGG + chr4_1:46395400-46395419 Msa0550820:intron 45.0%
CTATGTACACCAGCAAACCA+AGG - chr4_1:46395501-46395520 None:intergenic 45.0%
GGATCTGCATCGAGGTAAAT+TGG - chr4_1:46395555-46395574 None:intergenic 45.0%
! GATATGGTTTGCAAGGCTGT+TGG + chr4_1:46395584-46395603 Msa0550820:CDS 45.0%
GGATTTCAATGGGTAAGGCT+CGG + chr4_1:46395619-46395638 Msa0550820:intron 45.0%
!! CTACAGGTGCTGAGTTGTAT+CGG + chr4_1:46395948-46395967 Msa0550820:three_prime_UTR 45.0%
GTTGTATCGGAAACTAAGCG+GGG + chr4_1:46395961-46395980 Msa0550820:three_prime_UTR 45.0%
!!! AATTGTTTTATTTTTTTAAA+TGG + chr4_1:46391208-46391227 Msa0550820:intron 5.0%
!! TTTAATAATATTATAACTAT+TGG + chr4_1:46392710-46392729 Msa0550820:intron 5.0%
!! TTAATAATATTATAACTATT+GGG + chr4_1:46392711-46392730 Msa0550820:intron 5.0%
! GGAGGAAATGAAGAGGTACG+TGG - chr4_1:46389766-46389785 None:intergenic 50.0%
GAGGATGGGAGGAAATGAAG+AGG - chr4_1:46389773-46389792 None:intergenic 50.0%
ATTACATCCTCGAGCCGGAA+CGG + chr4_1:46389839-46389858 Msa0550820:CDS 50.0%
AGAACTTGAAGCGACCGTTC+CGG - chr4_1:46389856-46389875 None:intergenic 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG + chr4_1:46390026-46390045 Msa0550820:CDS 50.0%
!! ATGGGTGGTTAGTCTCACAC+TGG + chr4_1:46390384-46390403 Msa0550820:intron 50.0%
GAGCAACCACACAAGTGAGT+TGG + chr4_1:46390855-46390874 Msa0550820:intron 50.0%
! GTTTGGGAGTTTAAGACGGG+AGG + chr4_1:46390909-46390928 Msa0550820:intron 50.0%
! TTGGGAGTTTAAGACGGGAG+GGG + chr4_1:46390911-46390930 Msa0550820:intron 50.0%
!! AGGGGAGGGCTTTGGAAAAA+AGG + chr4_1:46390929-46390948 Msa0550820:intron 50.0%
TGGGATATGTGGAGGGCTTT+GGG + chr4_1:46390962-46390981 Msa0550820:intron 50.0%
TGGGGAAACTCTGCACTATG+AGG - chr4_1:46391016-46391035 None:intergenic 50.0%
CTTAGGCTATGGGATTGCTG+GGG + chr4_1:46392869-46392888 Msa0550820:CDS 50.0%
CTTCCCTGAAGGAATGGTGA+AGG - chr4_1:46393264-46393283 None:intergenic 50.0%
CTTCACCATTCCTTCAGGGA+AGG + chr4_1:46393262-46393281 Msa0550820:CDS 50.0%
!!! GCTGTACTCGGGTTGCTTTT+TGG + chr4_1:46393990-46394009 Msa0550820:CDS 50.0%
ATACCAGCAATGTTCCCTCC+AGG - chr4_1:46394244-46394263 None:intergenic 50.0%
TTCTAGCGCCTCAAGTGCAA+AGG - chr4_1:46394487-46394506 None:intergenic 50.0%
! TGCACTTGAGGCGCTAGAAA+AGG + chr4_1:46394488-46394507 Msa0550820:intron 50.0%
! GATCTTGTTTCAGCTTGGCG+GGG + chr4_1:46394987-46395006 Msa0550820:intron 50.0%
! ATCTTGTTTCAGCTTGGCGG+GGG + chr4_1:46394988-46395007 Msa0550820:intron 50.0%
TCATGACTGTTGGGGAGTCT+GGG - chr4_1:46395326-46395345 None:intergenic 50.0%
TTTGCTTATGCAGGCTGGAC+GGG + chr4_1:46395401-46395420 Msa0550820:intron 50.0%
GCTAGATAGGATCTGCATCG+AGG - chr4_1:46395563-46395582 None:intergenic 50.0%
TCGGAAACTAAGCGGGGAAA+TGG + chr4_1:46395967-46395986 Msa0550820:three_prime_UTR 50.0%
CGGAAACTAAGCGGGGAAAT+GGG + chr4_1:46395968-46395987 Msa0550820:three_prime_UTR 50.0%
GGAAACTAAGCGGGGAAATG+GGG + chr4_1:46395969-46395988 Msa0550820:three_prime_UTR 50.0%
GAAACTAAGCGGGGAAATGG+GGG + chr4_1:46395970-46395989 Msa0550820:three_prime_UTR 50.0%
TCTTGAGAAGGGAGGATGGG+AGG - chr4_1:46389784-46389803 None:intergenic 55.0%
! GAGTTTAAGACGGGAGGGGA+GGG + chr4_1:46390915-46390934 Msa0550820:intron 55.0%
GTGGGATATGTGGAGGGCTT+TGG + chr4_1:46390961-46390980 Msa0550820:intron 55.0%
GGGATATGTGGAGGGCTTTG+GGG + chr4_1:46390963-46390982 Msa0550820:intron 55.0%
! GGATATGTGGAGGGCTTTGG+GGG + chr4_1:46390964-46390983 Msa0550820:intron 55.0%
!! GATATGTGGAGGGCTTTGGG+GGG + chr4_1:46390965-46390984 Msa0550820:intron 55.0%
GGAGGTCATGGGTTCAAACC+TGG - chr4_1:46391288-46391307 None:intergenic 55.0%
AGGTTCTGTTTGGGAGGGGA+TGG - chr4_1:46391368-46391387 None:intergenic 55.0%
CACCCAACAATGGCAAGCTG+AGG + chr4_1:46391495-46391514 Msa0550820:intron 55.0%
! TTTGGTGCAACAACGCTCGC+AGG + chr4_1:46391784-46391803 Msa0550820:CDS 55.0%
GGATTCTTGGGGACCCTTGA+AGG + chr4_1:46392791-46392810 Msa0550820:CDS 55.0%
TTGGGGACCCTTGAAGGCTT+TGG + chr4_1:46392797-46392816 Msa0550820:CDS 55.0%
GCAGCAGCCAAAGCCTTCAA+GGG - chr4_1:46392807-46392826 None:intergenic 55.0%
ATGGTCACACCCGCAACTGT+TGG + chr4_1:46394218-46394237 Msa0550820:CDS 55.0%
! ACCCACTTGTTGGGGGAGTA+CGG - chr4_1:46394963-46394982 None:intergenic 55.0%
GGGGAGTGACGAGCAATAAC+AGG - chr4_1:46395306-46395325 None:intergenic 55.0%
CATGACTGTTGGGGAGTCTG+GGG - chr4_1:46395325-46395344 None:intergenic 55.0%
GTCATGACTGTTGGGGAGTC+TGG - chr4_1:46395327-46395346 None:intergenic 55.0%
!!! GGCTGTTGGTTTTCCCTTGC+TGG + chr4_1:46395598-46395617 Msa0550820:CDS 55.0%
! GGGAGATAGAAGGCGCAGAA+GGG - chr4_1:46395733-46395752 None:intergenic 55.0%
! TGGGAGATAGAAGGCGCAGA+AGG - chr4_1:46395734-46395753 None:intergenic 55.0%
CTGCGCCTTCTATCTCCCAA+TGG + chr4_1:46395735-46395754 Msa0550820:CDS 55.0%
!! CGATCAAGTGTGGTGCCACT+GGG + chr4_1:46396037-46396056 Msa0550820:three_prime_UTR 55.0%
! GGAGTTTAAGACGGGAGGGG+AGG + chr4_1:46390914-46390933 Msa0550820:intron 60.0%
GGTCGATCGCCCAAAGTGCA+AGG + chr4_1:46392308-46392327 Msa0550820:CDS 60.0%
GGCAGCAGCCAAAGCCTTCA+AGG - chr4_1:46392808-46392827 None:intergenic 60.0%
ATGGGATTGCTGGGGCTGCA+TGG + chr4_1:46392877-46392896 Msa0550820:CDS 60.0%
TGGGATTGCTGGGGCTGCAT+GGG + chr4_1:46392878-46392897 Msa0550820:CDS 60.0%
! TGGGGCTGCATGGGCTACAT+TGG + chr4_1:46392887-46392906 Msa0550820:CDS 60.0%
! GACAGGCTCGGTCGCTTCTA+AGG + chr4_1:46393949-46393968 Msa0550820:intron 60.0%
TCCCTCCAGGCCAACAGTTG+CGG - chr4_1:46394231-46394250 None:intergenic 60.0%
TGGCCTGGAGGGAACATTGC+TGG + chr4_1:46394238-46394257 Msa0550820:CDS 60.0%
TCCCGTACTCCCCCAACAAG+TGG + chr4_1:46394958-46394977 Msa0550820:intron 60.0%
! CCCACTTGTTGGGGGAGTAC+GGG - chr4_1:46394962-46394981 None:intergenic 60.0%
CCCGTACTCCCCCAACAAGT+GGG + chr4_1:46394959-46394978 Msa0550820:intron 60.0%
AAGCGGGGAAATGGGGGATG+TGG + chr4_1:46395976-46395995 Msa0550820:three_prime_UTR 60.0%
AGCGGGGAAATGGGGGATGT+GGG + chr4_1:46395977-46395996 Msa0550820:three_prime_UTR 60.0%
!! GCGATCAAGTGTGGTGCCAC+TGG + chr4_1:46396036-46396055 Msa0550820:three_prime_UTR 60.0%
AAGACGGGAGGGGAGGGCTT+TGG + chr4_1:46390921-46390940 Msa0550820:intron 65.0%
CACACCCGCAACTGTTGGCC+TGG + chr4_1:46394223-46394242 Msa0550820:CDS 65.0%
! ACCCGCAACTGTTGGCCTGG+AGG + chr4_1:46394226-46394245 Msa0550820:CDS 65.0%
CCCTCCAGGCCAACAGTTGC+GGG - chr4_1:46394230-46394249 None:intergenic 65.0%
! CCCGCAACTGTTGGCCTGGA+GGG + chr4_1:46394227-46394246 Msa0550820:CDS 65.0%
! GAAGCGACCGTTCCGGCTCG+AGG - chr4_1:46389849-46389868 None:intergenic 70.0%
!! GTGGAGGGCTTTGGGGGGTG+AGG + chr4_1:46390970-46390989 Msa0550820:intron 70.0%
! AGCTTGGCGGGGGAGCGTGA+GGG + chr4_1:46394998-46395017 Msa0550820:intron 70.0%
! CAGCTTGGCGGGGGAGCGTG+AGG + chr4_1:46394997-46395016 Msa0550820:intron 75.0%
! GCTTGGCGGGGGAGCGTGAG+GGG + chr4_1:46394999-46395018 Msa0550820:intron 75.0%
! CTTGGCGGGGGAGCGTGAGG+GGG + chr4_1:46395000-46395019 Msa0550820:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46389591 46396283 46389591 ID=Msa0550820;Name=Msa0550820
chr4_1 mRNA 46389591 46396283 46389591 ID=Msa0550820-mRNA-1;Parent=Msa0550820;Name=Msa0550820-mRNA-1;_AED=0.32;_eAED=0.32;_QI=119|1|1|1|1|1|14|468|542
chr4_1 exon 46389591 46390124 46389591 ID=Msa0550820-mRNA-1:exon:12485;Parent=Msa0550820-mRNA-1
chr4_1 exon 46390206 46390300 46390206 ID=Msa0550820-mRNA-1:exon:12486;Parent=Msa0550820-mRNA-1
chr4_1 exon 46391697 46391805 46391697 ID=Msa0550820-mRNA-1:exon:12487;Parent=Msa0550820-mRNA-1
chr4_1 exon 46391931 46391986 46391931 ID=Msa0550820-mRNA-1:exon:12488;Parent=Msa0550820-mRNA-1
chr4_1 exon 46392274 46392329 46392274 ID=Msa0550820-mRNA-1:exon:12489;Parent=Msa0550820-mRNA-1
chr4_1 exon 46392779 46392917 46392779 ID=Msa0550820-mRNA-1:exon:12490;Parent=Msa0550820-mRNA-1
chr4_1 exon 46393203 46393340 46393203 ID=Msa0550820-mRNA-1:exon:12491;Parent=Msa0550820-mRNA-1
chr4_1 exon 46393426 46393494 46393426 ID=Msa0550820-mRNA-1:exon:12492;Parent=Msa0550820-mRNA-1
chr4_1 exon 46393600 46393710 46393600 ID=Msa0550820-mRNA-1:exon:12493;Parent=Msa0550820-mRNA-1
chr4_1 exon 46393954 46394082 46393954 ID=Msa0550820-mRNA-1:exon:12494;Parent=Msa0550820-mRNA-1
chr4_1 exon 46394182 46394259 46394182 ID=Msa0550820-mRNA-1:exon:12495;Parent=Msa0550820-mRNA-1
chr4_1 exon 46395414 46395485 46395414 ID=Msa0550820-mRNA-1:exon:12496;Parent=Msa0550820-mRNA-1
chr4_1 exon 46395571 46395630 46395571 ID=Msa0550820-mRNA-1:exon:12497;Parent=Msa0550820-mRNA-1
chr4_1 exon 46395714 46396283 46395714 ID=Msa0550820-mRNA-1:exon:12498;Parent=Msa0550820-mRNA-1
chr4_1 five_prime_UTR 46389591 46389709 46389591 ID=Msa0550820-mRNA-1:five_prime_utr;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46389710 46390124 46389710 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46390206 46390300 46390206 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46391697 46391805 46391697 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46391931 46391986 46391931 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46392274 46392329 46392274 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46392779 46392917 46392779 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46393203 46393340 46393203 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46393426 46393494 46393426 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46393600 46393710 46393600 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46393954 46394082 46393954 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46394182 46394259 46394182 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46395414 46395485 46395414 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46395571 46395630 46395571 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 CDS 46395714 46395815 46395714 ID=Msa0550820-mRNA-1:cds;Parent=Msa0550820-mRNA-1
chr4_1 three_prime_UTR 46395816 46396283 46395816 ID=Msa0550820-mRNA-1:three_prime_utr;Parent=Msa0550820-mRNA-1
Gene Sequence

>Msa0550820

ATGGCACAAAAACTTTCACTAAACTTCAATCACACTTCACTACACTTGAATCGCCACGTACCTCTTCATTTCCTCCCATCCTCCCTTCTCAAGAAGAACACATCTATCCATTTAACAAACCAATGCATTATTACATCCTCGAGCCGGAACGGTCGCTTCAAGTTCTTAACAGCTTGCTTAGTTCAAAATAACGATGCCATACATGAATATGAAGAAAAAGTTCAAATCCACGAGTGTGTTGAAGAACAAGAAGAAGAAGTGAAGGAACTGGTTGAGCAGAGTATATGGATTCAGATGAAGGAAATTGTATTGTTTACTGGACCTGCTATTGGTCTTTGGTTATGTGGACCGTTGATGAGTCTCATTGATACTGCTGTTGTTGGTCAAGGAAGTTCAATTGAACTTGCTGCTTTAGGTCCTGCTACTGTTTTTTGTGATTATTTGGGCTACTCGTTCATGTTTTTGTCGATTGCTACTTCAAATATGGTTGCTACTGCACTTGCTAAACAGAATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGGTTAGCATGTGGCTTGGCGATGCTTTTTTTCACAAGATTATTTGGTGCAACAACGCTCGCAGCTTTTACTGGACCAAAGAATGTACATATAGTACCCGCAGCTAATACTTATGTCCAGATTCGAGGGTTGGCATGGCCTTGTTTACTTGTTGGGTCGATCGCCCAAAGTGCAAGTCTTGGTATGAAGGATTCTTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTATTATAAATGGAATTGGTGATATAATTCTGTGCAGATACTTAGGCTATGGGATTGCTGGGGCTGCATGGGCTACATTGGCATCCCAAGTTGTTGCGGCGTATATGATGAGCCAAACTCTAAACGAGAAGGGATACAATGCATTTGCCTTCACCATTCCTTCAGGGAAGGAATTTCTGTCAATATTAAGTCTTGCTGCTCCTGTATTTGTGACATTGATGTTAAAGGTGGCTTTCTACTCTCTACTTATATATTTTGCTACATCAATGGGTACAAATAAAATGGCTGCTCATCAAGTCATGCTTCAGATCTACATGTTATGCACAATATGTGGTGAACCTCTATCCCAAACTGCTCAATCATTTATGCCTGAGTTGATGTATGGAGTAAATCGGAGTTTGGTAAAGGCTCGGTCGCTTCTAAGGTCTCTTCTAACTATTGGAGCTGTACTCGGGTTGCTTTTTGGGATTGTTGGAACATCTGTTCCTTGGTTATTCCCCTACATTTTTACACCTGATCAGATGGTTATCCAGGAGATGCATAAGATACTGATTCCATACTTTTTAGCGCTAATGGTCACACCCGCAACTGTTGGCCTGGAGGGAACATTGCTGGCTGGACGGGATCTTAGATTTATAAGCTTGTCAATGACTGGATGCTTTTGTTTGAATGGTCTAGTATTATTGATCCTATCTAGCAGATATGGTTTGCAAGGCTGTTGGTTTTCCCTTGCTGGATTTCAATGGGTTCGGTTTTCATCAGCCCTTCTGCGCCTTCTATCTCCCAATGGCATTTTATACTCGGAAGATATAAGCCAGTATGAGCTGCAAAAGTTGAAGACTGCATAG

Protein sequence

>Msa0550820

MAQKLSLNFNHTSLHLNRHVPLHFLPSSLLKKNTSIHLTNQCIITSSSRNGRFKFLTACLVQNNDAIHEYEEKVQIHECVEEQEEEVKELVEQSIWIQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLGYSFMFLSIATSNMVATALAKQNREEVQHHISVLLFIGLACGLAMLFFTRLFGATTLAAFTGPKNVHIVPAANTYVQIRGLAWPCLLVGSIAQSASLGMKDSWGPLKALAAASIINGIGDIILCRYLGYGIAGAAWATLASQVVAAYMMSQTLNEKGYNAFAFTIPSGKEFLSILSLAAPVFVTLMLKVAFYSLLIYFATSMGTNKMAAHQVMLQIYMLCTICGEPLSQTAQSFMPELMYGVNRSLVKARSLLRSLLTIGAVLGLLFGIVGTSVPWLFPYIFTPDQMVIQEMHKILIPYFLALMVTPATVGLEGTLLAGRDLRFISLSMTGCFCLNGLVLLILSSRYGLQGCWFSLAGFQWVRFSSALLRLLSPNGILYSEDISQYELQKLKTA*