AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0147070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147070 MtrunA17_Chr1g0156491 77.966 177 19 2 1 177 1 157 2.15e-90 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147070 AT1G75690.1 59.412 170 47 4 8 177 7 154 5.10e-60 184

Find 57 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTATCTATGTAAAATTT+TGG 0.181569 1_4:-6933062 Msa0147070:three_prime_UTR
AATGAGTTTACTATCTTAAA+TGG 0.210653 1_4:-6932918 Msa0147070:three_prime_UTR
AGATTGAGGGGCACTGATTT+TGG 0.211384 1_4:-6933219 Msa0147070:three_prime_UTR
GGGCTGCGTGTTATCTCTTT+TGG 0.263030 1_4:+6934518 None:intergenic
TGCTTCCCATGCAATGGTTC+TGG 0.280691 1_4:-6934495 Msa0147070:CDS
ATGTACTCATTCAATTTCTT+TGG 0.295039 1_4:-6933179 Msa0147070:three_prime_UTR
TAGGCATAGTTACTTTCTCC+TGG 0.364821 1_4:+6932975 None:intergenic
CGTGGATAAAATGTGGGTTT+TGG 0.374056 1_4:+6934857 None:intergenic
TTGAGTGTGGCTGTTGGAAT+TGG 0.393770 1_4:-6934687 Msa0147070:CDS
CAAAATTCAATCTTTACAAC+AGG 0.416741 1_4:+6933012 None:intergenic
AGAACCATTGCATGGGAAGC+AGG 0.424768 1_4:+6934497 None:intergenic
AAGTTCAACAGTCACATTAC+CGG 0.426738 1_4:+6933534 None:intergenic
CAGGTAGTTGCTATAACTGT+TGG 0.428401 1_4:-6934714 Msa0147070:CDS
AACTAAGTGTTGAATGTGTT+AGG 0.436200 1_4:+6935008 None:intergenic
AAACAAAATCTGCATTTCTC+TGG 0.448676 1_4:+6933562 None:intergenic
GTTATGTTGATGCTTTCATT+TGG 0.457520 1_4:-6933126 Msa0147070:three_prime_UTR
GTAGTAGATAAGGATTTAAG+AGG 0.469567 1_4:+6934908 None:intergenic
AAGAGGAGAAGAAAGAAAAG+TGG 0.471069 1_4:+6934925 None:intergenic
TGTACAACTTGTCAAGGATC+TGG 0.478203 1_4:-6933451 Msa0147070:CDS
AGAAAAGTGGAATGTAATTG+AGG 0.481069 1_4:+6934938 None:intergenic
AGGCATAGTTACTTTCTCCT+GGG 0.485729 1_4:+6932976 None:intergenic
AGGGAGTGGCCTAATATCAT+TGG 0.501462 1_4:+6933090 None:intergenic
CTGAGAGAAGCTAAGATTGA+GGG 0.505701 1_4:-6933232 Msa0147070:exon
TTTAATACGTGGATAAAATG+TGG 0.513316 1_4:+6934850 None:intergenic
TTACATAGATAGGTCATGAA+AGG 0.516871 1_4:+6933070 None:intergenic
TTTGTTGTGCATATGGCCCC+AGG 0.518457 1_4:-6932993 Msa0147070:three_prime_UTR
TAATTGTGTAGTAGTAGATA+AGG 0.518803 1_4:+6934898 None:intergenic
TACATAGATAGGTCATGAAA+GGG 0.519051 1_4:+6933071 None:intergenic
TTAATACGTGGATAAAATGT+GGG 0.525605 1_4:+6934851 None:intergenic
ACTGAGAGAAGCTAAGATTG+AGG 0.542735 1_4:-6933233 Msa0147070:exon
CAGCCCTGCTTCCCATGCAA+TGG 0.546625 1_4:-6934501 Msa0147070:CDS
GAACACCGTACCTACGATCA+AGG 0.554130 1_4:+6933413 None:intergenic
AACAACGGTGATAGTTATGT+AGG 0.558549 1_4:+6932956 None:intergenic
GGTAATGTGACTGTTGAACT+TGG 0.571939 1_4:-6933532 Msa0147070:CDS
GAACCATTGCATGGGAAGCA+GGG 0.571952 1_4:+6934498 None:intergenic
ATTTGTGATTCATAAAACAC+TGG 0.577782 1_4:+6934660 None:intergenic
ATAACTTTGATAGTTATATG+TGG 0.581363 1_4:+6933144 None:intergenic
TGAACTTGGTGGAGCTGAGA+CGG 0.581832 1_4:-6933518 Msa0147070:CDS
CTGCATAAATTGTGATGGTG+CGG 0.586364 1_4:-6933485 Msa0147070:CDS
AGATAGGTCATGAAAGGGAG+TGG 0.587821 1_4:+6933076 None:intergenic
TGCATAAATTGTGATGGTGC+GGG 0.591712 1_4:-6933484 Msa0147070:CDS
CGAGCTCCAGAACCATTGCA+TGG 0.592093 1_4:+6934489 None:intergenic
GGCATAGTTACTTTCTCCTG+GGG 0.597615 1_4:+6932977 None:intergenic
TCTCGCTGCATAAATTGTGA+TGG 0.600927 1_4:-6933490 Msa0147070:CDS
CTGACATGTACAACTTGTCA+AGG 0.612986 1_4:-6933457 Msa0147070:CDS
GTGTTGAATGTGTTAGGCAA+TGG 0.621072 1_4:+6935014 None:intergenic
ACTTGGTGGAGCTGAGACGG+AGG 0.632275 1_4:-6933515 Msa0147070:CDS
AGTTCAAGAGCTTTAATACG+TGG 0.639758 1_4:+6934839 None:intergenic
AACCTCGTTACCTTGATCGT+AGG 0.640316 1_4:-6933423 Msa0147070:intron
GCTGTCACAACCACATGACA+TGG 0.642254 1_4:+6935104 None:intergenic
GAGCTCCAGAACCATTGCAT+GGG 0.645320 1_4:+6934490 None:intergenic
AATGTGACTGTTGAACTTGG+TGG 0.646977 1_4:-6933529 Msa0147070:CDS
TGAGAGAAGCTAAGATTGAG+GGG 0.652158 1_4:-6933231 Msa0147070:three_prime_UTR
TCTTGAACTTGATCAAAACA+CGG 0.674004 1_4:-6934825 Msa0147070:intron
ATCAATCATCATCCACTCAG+TGG 0.674578 1_4:+6935077 None:intergenic
GTGACAGCTTCACCACTGAG+TGG 0.717429 1_4:-6935089 Msa0147070:five_prime_UTR
TACCTACGATCAAGGTAACG+AGG 0.728545 1_4:+6933421 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATAGTAATAAATAAA+TGG + chr1_4:6933391-6933410 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG + chr1_4:6934218-6934237 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG + chr1_4:6934625-6934644 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG + chr1_4:6934626-6934645 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG + chr1_4:6934627-6934646 None:intergenic 10.0%
!! ATGATATAGTAATAAATAAA+TGG + chr1_4:6933391-6933410 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG + chr1_4:6934218-6934237 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG + chr1_4:6934625-6934644 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG + chr1_4:6934626-6934645 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG + chr1_4:6934627-6934646 None:intergenic 10.0%
!! TATATCATATAATAATGTGT+TGG - chr1_4:6933403-6933422 Msa0147070:intron 15.0%
!! TGCAACAAATTAAAAAAAAA+AGG + chr1_4:6933461-6933480 None:intergenic 15.0%
!!! TTTTTTTTTTAATTTGTTGC+AGG - chr1_4:6933460-6933479 Msa0147070:CDS 15.0%
!! AAGTTAAATTATATAACTTC+TGG - chr1_4:6933987-6934006 Msa0147070:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG - chr1_4:6934252-6934271 Msa0147070:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG + chr1_4:6934259-6934278 None:intergenic 15.0%
!! TATATCATATAATAATGTGT+TGG - chr1_4:6933403-6933422 Msa0147070:intron 15.0%
!! TGCAACAAATTAAAAAAAAA+AGG + chr1_4:6933461-6933480 None:intergenic 15.0%
!!! TTTTTTTTTTAATTTGTTGC+AGG - chr1_4:6933460-6933479 Msa0147070:CDS 15.0%
!! AAGTTAAATTATATAACTTC+TGG - chr1_4:6933987-6934006 Msa0147070:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG - chr1_4:6934252-6934271 Msa0147070:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG + chr1_4:6934259-6934278 None:intergenic 15.0%
!! TGAATGAATGAATAAGAAAT+AGG + chr1_4:6933218-6933237 None:intergenic 20.0%
!!! ACACTTTATACTTTTATGAA+TGG - chr1_4:6933569-6933588 Msa0147070:CDS 20.0%
!!! CTATAAGCATATAAACTTTT+TGG + chr1_4:6933774-6933793 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG - chr1_4:6933772-6933791 Msa0147070:intron 20.0%
!!! GTGGATAAGTTTTTTTTTAT+AGG - chr1_4:6933803-6933822 Msa0147070:intron 20.0%
!!! AAGTTTTTTTTTATAGGTAG+TGG - chr1_4:6933809-6933828 Msa0147070:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG - chr1_4:6933950-6933969 Msa0147070:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG + chr1_4:6934410-6934429 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+TGG + chr1_4:6934860-6934879 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG - chr1_4:6934902-6934921 Msa0147070:CDS 20.0%
!! TACAAAAACATAATCAACAA+CGG + chr1_4:6935063-6935082 None:intergenic 20.0%
!! AATGAGTTTACTATCTTAAA+TGG - chr1_4:6935083-6935102 Msa0147070:five_prime_UTR 20.0%
!! TGAATGAATGAATAAGAAAT+AGG + chr1_4:6933218-6933237 None:intergenic 20.0%
!!! ACACTTTATACTTTTATGAA+TGG - chr1_4:6933569-6933588 Msa0147070:CDS 20.0%
!!! CTATAAGCATATAAACTTTT+TGG + chr1_4:6933774-6933793 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG - chr1_4:6933772-6933791 Msa0147070:intron 20.0%
!!! GTGGATAAGTTTTTTTTTAT+AGG - chr1_4:6933803-6933822 Msa0147070:intron 20.0%
!!! AAGTTTTTTTTTATAGGTAG+TGG - chr1_4:6933809-6933828 Msa0147070:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG - chr1_4:6933950-6933969 Msa0147070:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG + chr1_4:6934410-6934429 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+TGG + chr1_4:6934860-6934879 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG - chr1_4:6934902-6934921 Msa0147070:CDS 20.0%
!! TACAAAAACATAATCAACAA+CGG + chr1_4:6935063-6935082 None:intergenic 20.0%
!! AATGAGTTTACTATCTTAAA+TGG - chr1_4:6935083-6935102 Msa0147070:five_prime_UTR 20.0%
! TAATTGTGTAGTAGTAGATA+AGG + chr1_4:6933106-6933125 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG + chr1_4:6933153-6933172 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG + chr1_4:6933154-6933173 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG + chr1_4:6933215-6933234 None:intergenic 25.0%
! ATTTGTGATTCATAAAACAC+TGG + chr1_4:6933344-6933363 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG - chr1_4:6933572-6933591 Msa0147070:CDS 25.0%
! CTCACAAGTTATTGTTAATT+TGG - chr1_4:6933611-6933630 Msa0147070:CDS 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG - chr1_4:6933708-6933727 Msa0147070:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG - chr1_4:6934667-6934686 Msa0147070:CDS 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG + chr1_4:6934710-6934729 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG - chr1_4:6934822-6934841 Msa0147070:intron 25.0%
!! GACCTATCTATGTAAAATTT+TGG - chr1_4:6934939-6934958 Msa0147070:CDS 25.0%
!! CACCAAAATTTTACATAGAT+AGG + chr1_4:6934944-6934963 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG + chr1_4:6934992-6935011 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG - chr1_4:6935001-6935020 Msa0147070:five_prime_UTR 25.0%
! TAATTGTGTAGTAGTAGATA+AGG + chr1_4:6933106-6933125 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG + chr1_4:6933153-6933172 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG + chr1_4:6933154-6933173 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG + chr1_4:6933215-6933234 None:intergenic 25.0%
! ATTTGTGATTCATAAAACAC+TGG + chr1_4:6933344-6933363 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG - chr1_4:6933572-6933591 Msa0147070:CDS 25.0%
! CTCACAAGTTATTGTTAATT+TGG - chr1_4:6933611-6933630 Msa0147070:CDS 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG - chr1_4:6933708-6933727 Msa0147070:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG - chr1_4:6934667-6934686 Msa0147070:CDS 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG + chr1_4:6934710-6934729 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG - chr1_4:6934822-6934841 Msa0147070:intron 25.0%
!! GACCTATCTATGTAAAATTT+TGG - chr1_4:6934939-6934958 Msa0147070:CDS 25.0%
!! CACCAAAATTTTACATAGAT+AGG + chr1_4:6934944-6934963 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG + chr1_4:6934992-6935011 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG - chr1_4:6935001-6935020 Msa0147070:five_prime_UTR 25.0%
AAAAACATAACCATGTCATG+TGG - chr1_4:6932887-6932906 Msa0147070:three_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG + chr1_4:6932996-6933015 None:intergenic 30.0%
AGAAAAGTGGAATGTAATTG+AGG + chr1_4:6933066-6933085 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG + chr1_4:6933096-6933115 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG - chr1_4:6933176-6933195 Msa0147070:three_prime_UTR 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG - chr1_4:6933268-6933287 Msa0147070:intron 30.0%
TTGCTTATAGGTAGTGTTTA+TGG - chr1_4:6933962-6933981 Msa0147070:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG + chr1_4:6934385-6934404 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG + chr1_4:6934442-6934461 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG - chr1_4:6934441-6934460 Msa0147070:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG - chr1_4:6934442-6934461 Msa0147070:intron 30.0%
GTTATGTTGATGCTTTCATT+TGG - chr1_4:6934875-6934894 Msa0147070:CDS 30.0%
TACATAGATAGGTCATGAAA+GGG + chr1_4:6934933-6934952 None:intergenic 30.0%
TTACATAGATAGGTCATGAA+AGG + chr1_4:6934934-6934953 None:intergenic 30.0%
AAAAACATAACCATGTCATG+TGG - chr1_4:6932887-6932906 Msa0147070:three_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG + chr1_4:6932996-6933015 None:intergenic 30.0%
AGAAAAGTGGAATGTAATTG+AGG + chr1_4:6933066-6933085 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG + chr1_4:6933096-6933115 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG - chr1_4:6933176-6933195 Msa0147070:three_prime_UTR 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG - chr1_4:6933268-6933287 Msa0147070:intron 30.0%
TTGCTTATAGGTAGTGTTTA+TGG - chr1_4:6933962-6933981 Msa0147070:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG + chr1_4:6934385-6934404 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG + chr1_4:6934442-6934461 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG - chr1_4:6934441-6934460 Msa0147070:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG - chr1_4:6934442-6934461 Msa0147070:intron 30.0%
GTTATGTTGATGCTTTCATT+TGG - chr1_4:6934875-6934894 Msa0147070:CDS 30.0%
TACATAGATAGGTCATGAAA+GGG + chr1_4:6934933-6934952 None:intergenic 30.0%
TTACATAGATAGGTCATGAA+AGG + chr1_4:6934934-6934953 None:intergenic 30.0%
AAGAGGAGAAGAAAGAAAAG+TGG + chr1_4:6933079-6933098 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG + chr1_4:6933165-6933184 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG - chr1_4:6933582-6933601 Msa0147070:CDS 35.0%
CTAAAAGCTAATTCAAACGC+TGG + chr1_4:6933703-6933722 None:intergenic 35.0%
! ATGCTAGCTTGAACAATCAT+TGG + chr1_4:6933932-6933951 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG - chr1_4:6934123-6934142 Msa0147070:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG - chr1_4:6934124-6934143 Msa0147070:intron 35.0%
ACAACCTAATGTCTAGTAAC+CGG + chr1_4:6934343-6934362 None:intergenic 35.0%
AATCAGTTCAAGTCCATATC+AGG - chr1_4:6934369-6934388 Msa0147070:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG + chr1_4:6934470-6934489 None:intergenic 35.0%
CGCCAAATGACAAATTATCA+TGG + chr1_4:6934672-6934691 None:intergenic 35.0%
AACAACGGTGATAGTTATGT+AGG + chr1_4:6935048-6935067 None:intergenic 35.0%
AAGAGGAGAAGAAAGAAAAG+TGG + chr1_4:6933079-6933098 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG + chr1_4:6933165-6933184 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG - chr1_4:6933582-6933601 Msa0147070:CDS 35.0%
CTAAAAGCTAATTCAAACGC+TGG + chr1_4:6933703-6933722 None:intergenic 35.0%
! ATGCTAGCTTGAACAATCAT+TGG + chr1_4:6933932-6933951 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG - chr1_4:6934123-6934142 Msa0147070:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG - chr1_4:6934124-6934143 Msa0147070:intron 35.0%
ACAACCTAATGTCTAGTAAC+CGG + chr1_4:6934343-6934362 None:intergenic 35.0%
AATCAGTTCAAGTCCATATC+AGG - chr1_4:6934369-6934388 Msa0147070:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG + chr1_4:6934470-6934489 None:intergenic 35.0%
CGCCAAATGACAAATTATCA+TGG + chr1_4:6934672-6934691 None:intergenic 35.0%
AACAACGGTGATAGTTATGT+AGG + chr1_4:6935048-6935067 None:intergenic 35.0%
ATCAATCATCATCCACTCAG+TGG + chr1_4:6932927-6932946 None:intergenic 40.0%
GTGTTGAATGTGTTAGGCAA+TGG + chr1_4:6932990-6933009 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG + chr1_4:6933147-6933166 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG - chr1_4:6933287-6933306 Msa0147070:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG - chr1_4:6933301-6933320 Msa0147070:intron 40.0%
CTGTTGTAGTGTAATGTGCA+AGG - chr1_4:6933677-6933696 Msa0147070:intron 40.0%
ATGCTTATAGGCAGTGTTTG+TGG - chr1_4:6933784-6933803 Msa0147070:intron 40.0%
GGAAAGAGACTCTGGTAATA+TGG - chr1_4:6933870-6933889 Msa0147070:intron 40.0%
GACTCTGGTAATATGGAGTT+CGG - chr1_4:6933877-6933896 Msa0147070:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG - chr1_4:6933882-6933901 Msa0147070:intron 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG - chr1_4:6934448-6934467 Msa0147070:intron 40.0%
GGTAATGTGACTGTTGAACT+TGG - chr1_4:6934469-6934488 Msa0147070:intron 40.0%
AATGTGACTGTTGAACTTGG+TGG - chr1_4:6934472-6934491 Msa0147070:intron 40.0%
TCTCGCTGCATAAATTGTGA+TGG - chr1_4:6934511-6934530 Msa0147070:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG - chr1_4:6934516-6934535 Msa0147070:CDS 40.0%
! TGCATAAATTGTGATGGTGC+GGG - chr1_4:6934517-6934536 Msa0147070:CDS 40.0%
CTGACATGTACAACTTGTCA+AGG - chr1_4:6934544-6934563 Msa0147070:intron 40.0%
TGTACAACTTGTCAAGGATC+TGG - chr1_4:6934550-6934569 Msa0147070:intron 40.0%
ACTGAGAGAAGCTAAGATTG+AGG - chr1_4:6934768-6934787 Msa0147070:intron 40.0%
CTGAGAGAAGCTAAGATTGA+GGG - chr1_4:6934769-6934788 Msa0147070:intron 40.0%
TGAGAGAAGCTAAGATTGAG+GGG - chr1_4:6934770-6934789 Msa0147070:intron 40.0%
! AGGCATAGTTACTTTCTCCT+GGG + chr1_4:6935028-6935047 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG + chr1_4:6935029-6935048 None:intergenic 40.0%
ATCAATCATCATCCACTCAG+TGG + chr1_4:6932927-6932946 None:intergenic 40.0%
GTGTTGAATGTGTTAGGCAA+TGG + chr1_4:6932990-6933009 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG + chr1_4:6933147-6933166 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG - chr1_4:6933287-6933306 Msa0147070:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG - chr1_4:6933301-6933320 Msa0147070:intron 40.0%
CTGTTGTAGTGTAATGTGCA+AGG - chr1_4:6933677-6933696 Msa0147070:intron 40.0%
ATGCTTATAGGCAGTGTTTG+TGG - chr1_4:6933784-6933803 Msa0147070:intron 40.0%
GGAAAGAGACTCTGGTAATA+TGG - chr1_4:6933870-6933889 Msa0147070:intron 40.0%
GACTCTGGTAATATGGAGTT+CGG - chr1_4:6933877-6933896 Msa0147070:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG - chr1_4:6933882-6933901 Msa0147070:intron 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG - chr1_4:6934448-6934467 Msa0147070:intron 40.0%
GGTAATGTGACTGTTGAACT+TGG - chr1_4:6934469-6934488 Msa0147070:intron 40.0%
AATGTGACTGTTGAACTTGG+TGG - chr1_4:6934472-6934491 Msa0147070:intron 40.0%
TCTCGCTGCATAAATTGTGA+TGG - chr1_4:6934511-6934530 Msa0147070:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG - chr1_4:6934516-6934535 Msa0147070:CDS 40.0%
! TGCATAAATTGTGATGGTGC+GGG - chr1_4:6934517-6934536 Msa0147070:CDS 40.0%
CTGACATGTACAACTTGTCA+AGG - chr1_4:6934544-6934563 Msa0147070:intron 40.0%
TGTACAACTTGTCAAGGATC+TGG - chr1_4:6934550-6934569 Msa0147070:intron 40.0%
ACTGAGAGAAGCTAAGATTG+AGG - chr1_4:6934768-6934787 Msa0147070:intron 40.0%
CTGAGAGAAGCTAAGATTGA+GGG - chr1_4:6934769-6934788 Msa0147070:intron 40.0%
TGAGAGAAGCTAAGATTGAG+GGG - chr1_4:6934770-6934789 Msa0147070:intron 40.0%
! AGGCATAGTTACTTTCTCCT+GGG + chr1_4:6935028-6935047 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG + chr1_4:6935029-6935048 None:intergenic 40.0%
TTGAGTGTGGCTGTTGGAAT+TGG - chr1_4:6933314-6933333 Msa0147070:intron 45.0%
!! TGAATGGAGGAGCATTATGG+AGG - chr1_4:6933585-6933604 Msa0147070:CDS 45.0%
TCTTAACCGTCATGTTCTCG+AGG - chr1_4:6933848-6933867 Msa0147070:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG - chr1_4:6933849-6933868 Msa0147070:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG + chr1_4:6933857-6933876 None:intergenic 45.0%
CTGGTAATATGGAGTTCGGT+TGG - chr1_4:6933881-6933900 Msa0147070:intron 45.0%
GCGATGCTTATGATTGTGTC+TGG - chr1_4:6934307-6934326 Msa0147070:intron 45.0%
!! TGTGCCGGTTACTAGACATT+AGG - chr1_4:6934336-6934355 Msa0147070:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG - chr1_4:6934578-6934597 Msa0147070:intron 45.0%
TACCTACGATCAAGGTAACG+AGG + chr1_4:6934583-6934602 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG - chr1_4:6934583-6934602 Msa0147070:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG - chr1_4:6934782-6934801 Msa0147070:intron 45.0%
AGGGAGTGGCCTAATATCAT+TGG + chr1_4:6934914-6934933 None:intergenic 45.0%
AGATAGGTCATGAAAGGGAG+TGG + chr1_4:6934928-6934947 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG + chr1_4:6935027-6935046 None:intergenic 45.0%
TTGAGTGTGGCTGTTGGAAT+TGG - chr1_4:6933314-6933333 Msa0147070:intron 45.0%
!! TGAATGGAGGAGCATTATGG+AGG - chr1_4:6933585-6933604 Msa0147070:CDS 45.0%
TCTTAACCGTCATGTTCTCG+AGG - chr1_4:6933848-6933867 Msa0147070:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG - chr1_4:6933849-6933868 Msa0147070:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG + chr1_4:6933857-6933876 None:intergenic 45.0%
CTGGTAATATGGAGTTCGGT+TGG - chr1_4:6933881-6933900 Msa0147070:intron 45.0%
GCGATGCTTATGATTGTGTC+TGG - chr1_4:6934307-6934326 Msa0147070:intron 45.0%
!! TGTGCCGGTTACTAGACATT+AGG - chr1_4:6934336-6934355 Msa0147070:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG - chr1_4:6934578-6934597 Msa0147070:intron 45.0%
TACCTACGATCAAGGTAACG+AGG + chr1_4:6934583-6934602 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG - chr1_4:6934583-6934602 Msa0147070:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG - chr1_4:6934782-6934801 Msa0147070:intron 45.0%
AGGGAGTGGCCTAATATCAT+TGG + chr1_4:6934914-6934933 None:intergenic 45.0%
AGATAGGTCATGAAAGGGAG+TGG + chr1_4:6934928-6934947 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG + chr1_4:6935027-6935046 None:intergenic 45.0%
!!! TTATTATTTTAACTTTTTAT+CGG - chr1_4:6934059-6934078 Msa0147070:intron 5.0%
!!! TTATTATTTTAACTTTTTAT+CGG - chr1_4:6934059-6934078 Msa0147070:intron 5.0%
GCTGTCACAACCACATGACA+TGG + chr1_4:6932900-6932919 None:intergenic 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG - chr1_4:6933308-6933327 Msa0147070:intron 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG + chr1_4:6933486-6933505 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG + chr1_4:6933506-6933525 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG + chr1_4:6933507-6933526 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG - chr1_4:6933506-6933525 Msa0147070:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG + chr1_4:6933514-6933533 None:intergenic 50.0%
TTCTCGAGGGAAAGAGACTC+TGG - chr1_4:6933862-6933881 Msa0147070:intron 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG - chr1_4:6934131-6934150 Msa0147070:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG - chr1_4:6934134-6934153 Msa0147070:intron 50.0%
! TGTGTCTGGTTGCTTTGTGC+CGG - chr1_4:6934321-6934340 Msa0147070:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG - chr1_4:6934483-6934502 Msa0147070:intron 50.0%
GAACACCGTACCTACGATCA+AGG + chr1_4:6934591-6934610 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG - chr1_4:6935008-6935027 Msa0147070:five_prime_UTR 50.0%
GCTGTCACAACCACATGACA+TGG + chr1_4:6932900-6932919 None:intergenic 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG - chr1_4:6933308-6933327 Msa0147070:intron 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG + chr1_4:6933486-6933505 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG + chr1_4:6933506-6933525 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG + chr1_4:6933507-6933526 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG - chr1_4:6933506-6933525 Msa0147070:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG + chr1_4:6933514-6933533 None:intergenic 50.0%
TTCTCGAGGGAAAGAGACTC+TGG - chr1_4:6933862-6933881 Msa0147070:intron 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG - chr1_4:6934131-6934150 Msa0147070:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG - chr1_4:6934134-6934153 Msa0147070:intron 50.0%
! TGTGTCTGGTTGCTTTGTGC+CGG - chr1_4:6934321-6934340 Msa0147070:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG - chr1_4:6934483-6934502 Msa0147070:intron 50.0%
GAACACCGTACCTACGATCA+AGG + chr1_4:6934591-6934610 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG - chr1_4:6935008-6935027 Msa0147070:five_prime_UTR 50.0%
GTGACAGCTTCACCACTGAG+TGG - chr1_4:6932912-6932931 Msa0147070:three_prime_UTR 55.0%
CGAGCTCCAGAACCATTGCA+TGG + chr1_4:6933515-6933534 None:intergenic 55.0%
GTGACAGCTTCACCACTGAG+TGG - chr1_4:6932912-6932931 Msa0147070:three_prime_UTR 55.0%
CGAGCTCCAGAACCATTGCA+TGG + chr1_4:6933515-6933534 None:intergenic 55.0%
CAGCCCTGCTTCCCATGCAA+TGG - chr1_4:6933500-6933519 Msa0147070:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG - chr1_4:6934486-6934505 Msa0147070:intron 60.0%
CAGCCCTGCTTCCCATGCAA+TGG - chr1_4:6933500-6933519 Msa0147070:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG - chr1_4:6934486-6934505 Msa0147070:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6932886 6935137 6932886 ID=Msa0147070;Name=Msa0147070
chr1_4 mRNA 6932886 6935137 6932886 ID=Msa0147070-mRNA-1;Parent=Msa0147070;Name=Msa0147070-mRNA-1;_AED=0.08;_eAED=0.09;_QI=150|0.5|0.6|1|1|1|5|365|177
chr1_4 exon 6932886 6933272 6932886 ID=Msa0147070-mRNA-1:exon:3037;Parent=Msa0147070-mRNA-1
chr1_4 exon 6933424 6933632 6933424 ID=Msa0147070-mRNA-1:exon:3036;Parent=Msa0147070-mRNA-1
chr1_4 exon 6934490 6934541 6934490 ID=Msa0147070-mRNA-1:exon:3035;Parent=Msa0147070-mRNA-1
chr1_4 exon 6934645 6934733 6934645 ID=Msa0147070-mRNA-1:exon:3034;Parent=Msa0147070-mRNA-1
chr1_4 exon 6934826 6935137 6934826 ID=Msa0147070-mRNA-1:exon:3033;Parent=Msa0147070-mRNA-1
chr1_4 five_prime_UTR 6934988 6935137 6934988 ID=Msa0147070-mRNA-1:five_prime_utr;Parent=Msa0147070-mRNA-1
chr1_4 CDS 6934826 6934987 6934826 ID=Msa0147070-mRNA-1:cds;Parent=Msa0147070-mRNA-1
chr1_4 CDS 6934645 6934733 6934645 ID=Msa0147070-mRNA-1:cds;Parent=Msa0147070-mRNA-1
chr1_4 CDS 6934490 6934541 6934490 ID=Msa0147070-mRNA-1:cds;Parent=Msa0147070-mRNA-1
chr1_4 CDS 6933424 6933632 6933424 ID=Msa0147070-mRNA-1:cds;Parent=Msa0147070-mRNA-1
chr1_4 CDS 6933251 6933272 6933251 ID=Msa0147070-mRNA-1:cds;Parent=Msa0147070-mRNA-1
chr1_4 three_prime_UTR 6932886 6933250 6932886 ID=Msa0147070-mRNA-1:three_prime_utr;Parent=Msa0147070-mRNA-1
Gene Sequence

>Msa0147070

ATGACAATATCTTATTCACTTTCACTTCCTCAATTACATTCCACTTTTCTTTCTTCTCCTCTTAAATCCTTATCTACTACTACACAATTAGCTAGAAATAAATTTCAACCAAAACCCACATTTTATCCACGTATTAAAGCTCTTGAACTTGATCAAAACACGGTAGTTGCTATAACTGTTGGTGTTTTGAGTGTGGCTGTTGGAATTGGCATACCAGTGTTTTATGAATCACAAATTGATAATGCTGTAAAGCCAAAAGAGATAACACGCAGCCCTGCTTCCCATGCAATGGTTCTGGAGCTCGTTGCTAATTTCTTTACCAATCTTATCTTTGAAAATGTTACACTTTTGCCAGAGAAATGCAGATTTTGTTTGGGAACCGGTAATGTGACTGTTGAACTTGGTGGAGCTGAGACGGAGGTCTCTCGCTGCATAAATTGTGATGGTGCGGGTTCACTGACATGTACAACTTGTCAAGGATCTGGAATTCAACCTCGTTACCTTGATCGTAGAGAATTCAAAGATGATGACTGA

Protein sequence

>Msa0147070

MTISYSLSLPQLHSTFLSSPLKSLSTTTQLARNKFQPKPTFYPRIKALELDQNTVVAITVGVLSVAVGIGIPVFYESQIDNAVKPKEITRSPASHAMVLELVANFFTNLIFENVTLLPEKCRFCLGTGNVTVELGGAETEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD*