AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131330 MtrunA17_Chr1g0200061 91.591 440 14 2 1 431 1 426 0.0 760
Msa0131330 MtrunA17_Chr1g0204031 78.431 51 11 0 179 229 432 482 6.19e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131330 AT5G50840.1 59.815 433 138 7 1 429 1 401 5.38e-149 429
Msa0131330 AT5G50840.2 59.217 434 140 7 1 429 1 402 2.29e-147 425

Find 98 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAGTGTGTTTGGTGTTT+TGG 0.222451 1_3:-62116627 Msa0131330:three_prime_UTR
TCTAATACCTTGTTTATATC+TGG 0.230764 1_3:-62116902 Msa0131330:three_prime_UTR
TCAGGAAGCTGGTTTGCTTC+TGG 0.243236 1_3:+62124482 None:intergenic
ATTGATTGTGGTCATTCTAA+TGG 0.258912 1_3:-62124347 Msa0131330:CDS
GTAAAGGATGCATGTGCTTC+AGG 0.259994 1_3:-62123054 Msa0131330:CDS
GTGGCATGTCTTGGTTTGTT+AGG 0.268926 1_3:-62116875 Msa0131330:three_prime_UTR
CAACCACCTCTTCTTCATAT+TGG 0.283834 1_3:+62116958 None:intergenic
CTGATGGGCTTCTCTTGTTC+AGG 0.299542 1_3:+62124392 None:intergenic
ACAATTCATGAAAAGGAAAA+AGG 0.300936 1_3:+62116751 None:intergenic
AGAACAAGTATCTCAGTTAT+TGG 0.302337 1_3:-62118076 Msa0131330:CDS
GAAGCACATGCATCCTTTAC+AGG 0.303336 1_3:+62123057 None:intergenic
TACTACCGCATTCACACTAT+TGG 0.319148 1_3:-62125182 Msa0131330:five_prime_UTR
TCCTGAAGTTGATTCATTGC+CGG 0.363142 1_3:-62124465 Msa0131330:CDS
GGCTTCTCTTGTTCAGGAGT+TGG 0.369688 1_3:+62124398 None:intergenic
ATCGCTATGCCGGTCACTTC+AGG 0.373308 1_3:-62117037 Msa0131330:CDS
TGCTACAGGATGTGAGTATC+AGG 0.375897 1_3:-62118692 Msa0131330:intron
TGGCATGTCTTGGTTTGTTA+GGG 0.377791 1_3:-62116874 Msa0131330:three_prime_UTR
GGTTGCAGCTAAACAACCTT+TGG 0.383471 1_3:-62123094 Msa0131330:CDS
AGAGAAATTCCAACAGTTCC+AGG 0.384564 1_3:-62118013 Msa0131330:intron
TTCAAACCTTGATTGCATCT+TGG 0.400861 1_3:+62119983 None:intergenic
GTTGGAGTAGCAGGAGCAAC+AGG 0.404376 1_3:+62124416 None:intergenic
ACTATTATTACTCTTGTTCT+CGG 0.407706 1_3:+62116993 None:intergenic
CAGAATAAATGTCACCTTCT+GGG 0.408951 1_3:+62118282 None:intergenic
TCCGGCAATGAATCAACTTC+AGG 0.416327 1_3:+62124464 None:intergenic
TATTGCAATACCATTGAAAA+CGG 0.427155 1_3:-62116803 Msa0131330:three_prime_UTR
TGTTCAGGAGTTGGAGTAGC+AGG 0.428948 1_3:+62124407 None:intergenic
TTGCCGGATGGGTTTGTTGA+GGG 0.434934 1_3:-62124449 Msa0131330:CDS
ATTGCAATACCATTGAAAAC+GGG 0.443165 1_3:-62116802 Msa0131330:three_prime_UTR
CGTTCTCCTTTAGCTGAGAA+AGG 0.449090 1_3:+62118646 None:intergenic
TATTTCTTTAGTATCTGATA+AGG 0.452104 1_3:-62123139 Msa0131330:intron
ACAGTTGAAGCAAAAGTCAT+TGG 0.459008 1_3:-62118178 Msa0131330:intron
ACTCAAGTATCAACAAGTAT+TGG 0.464833 1_3:-62122433 Msa0131330:CDS
ATAAGCTTGAGTCACTATGC+AGG 0.470749 1_3:-62121589 Msa0131330:CDS
ATGTCATACAATTCATGAAA+AGG 0.477709 1_3:+62116744 None:intergenic
TTTACATCATTGCTTCTGGA+TGG 0.479292 1_3:+62124170 None:intergenic
TAAGTTCCAAGATGCAATCA+AGG 0.480936 1_3:-62119989 Msa0131330:intron
TCTGGACTAGTGGCATGTCT+TGG 0.486438 1_3:-62116884 Msa0131330:three_prime_UTR
CGTTTGCAGCTGACAACTGA+TGG 0.491667 1_3:-62118036 Msa0131330:CDS
CCTCTCAGACTGCTCGGTGG+AGG 0.491915 1_3:-62124237 Msa0131330:intron
TGATTGCCTTTCTCAGCTAA+AGG 0.494939 1_3:-62118652 Msa0131330:CDS
ATGAATCAACTTCAGGAAGC+TGG 0.495951 1_3:+62124471 None:intergenic
AGTAGCAGGAGCAACAGGTT+CGG 0.499829 1_3:+62124421 None:intergenic
ATCCTCCTTGTAATCACTGA+TGG 0.503982 1_3:+62124376 None:intergenic
CGAGCGCTTGAAGAAACAGC+TGG 0.505935 1_3:-62117091 Msa0131330:CDS
TAATGGATTATCAAACGTGC+CGG 0.510915 1_3:-62124330 Msa0131330:CDS
GGTTGCAAACAACTTCTAGA+AGG 0.511261 1_3:-62116940 Msa0131330:three_prime_UTR
AATTACATTTATCTGAACTC+TGG 0.517076 1_3:+62124126 None:intergenic
ACATGAGGAAAGATCTGCTC+AGG 0.520293 1_3:-62118124 Msa0131330:CDS
ATCAATGAAGGAACTCAAGA+AGG 0.523923 1_3:-62117429 Msa0131330:CDS
GAGGATGGTTTCATTGATTG+TGG 0.524391 1_3:-62124359 Msa0131330:CDS
GACAAAAGCACTGCCTGTAA+AGG 0.524835 1_3:-62123070 Msa0131330:CDS
GCGTGCACTTAAATCAGAAA+AGG 0.525607 1_3:-62122472 Msa0131330:CDS
GAAGTTGATTCATTGCCGGA+TGG 0.529940 1_3:-62124461 Msa0131330:CDS
CTCTCAGACTGCTCGGTGGA+GGG 0.530354 1_3:-62124236 Msa0131330:intron
TAAAGGATGCATGTGCTTCA+GGG 0.531396 1_3:-62123053 Msa0131330:CDS
TCCTCTCTGCCTGAAGTGAC+CGG 0.533884 1_3:+62117028 None:intergenic
GTGCCCTCAACAAACCCATC+CGG 0.536588 1_3:+62124446 None:intergenic
TCAGATGGCAAAATCAATGA+AGG 0.543783 1_3:-62117441 Msa0131330:intron
ATTGCCGGATGGGTTTGTTG+AGG 0.550853 1_3:-62124450 Msa0131330:CDS
AAGTTGATTCATTGCCGGAT+GGG 0.555154 1_3:-62124460 Msa0131330:CDS
GAAGCCCATCAGTGATTACA+AGG 0.557693 1_3:-62124381 Msa0131330:CDS
TCTGTTACCATTGTTAATTG+TGG 0.559982 1_3:-62123115 Msa0131330:CDS
TCCTCCTTGTAATCACTGAT+GGG 0.561879 1_3:+62124377 None:intergenic
GCAAACAACTTCTAGAAGGA+AGG 0.562979 1_3:-62116936 Msa0131330:three_prime_UTR
ATCAGTGATTACAAGGAGGA+TGG 0.564958 1_3:-62124374 Msa0131330:CDS
CTTGTTTATATCTGGACTAG+TGG 0.570516 1_3:-62116894 Msa0131330:three_prime_UTR
GCGTCAAAATAAAATGCTGA+TGG 0.573163 1_3:-62121558 Msa0131330:intron
TCTCAATGACTGTCCATACT+CGG 0.577563 1_3:-62116661 Msa0131330:three_prime_UTR
CAACTGAGGGGCAAAACTTG+AGG 0.580596 1_3:-62120026 Msa0131330:CDS
TGCAAACGTGTATCAACTGA+GGG 0.582847 1_3:-62120039 Msa0131330:CDS
TGAGGGGCAAAACTTGAGGA+TGG 0.583482 1_3:-62120022 Msa0131330:CDS
GCTTCTGGATGGTTGAGACT+CGG 0.585832 1_3:+62124181 None:intergenic
AATGGATTATCAAACGTGCC+GGG 0.588211 1_3:-62124329 Msa0131330:intron
TGACTCAAGCTTATCTCTGA+CGG 0.609729 1_3:+62121598 None:intergenic
AAAGAGCAACAACAAGGAGA+AGG 0.611330 1_3:-62124149 Msa0131330:CDS
AATCATGGGGAATACCTAGC+GGG 0.611569 1_3:+62125135 None:intergenic
TGAGCAGCAATATGCCCAGA+AGG 0.617929 1_3:-62118296 Msa0131330:intron
TATCAGGCTCGAAGAACGAA+AGG 0.619128 1_3:-62118676 Msa0131330:CDS
TCGGCTCCAATATGAAGAAG+AGG 0.623702 1_3:-62116964 Msa0131330:exon
GCTGCAACCACAATTAACAA+TGG 0.634523 1_3:+62123108 None:intergenic
CACTAGTCCAGATATAAACA+AGG 0.636125 1_3:+62116895 None:intergenic
TAAGCTTGAGTCACTATGCA+GGG 0.636629 1_3:-62121588 Msa0131330:CDS
ACTTATAGAGTTAGTTGACG+AGG 0.647388 1_3:-62117363 Msa0131330:intron
ATTTAAACAAGAGATTGAGA+AGG 0.652438 1_3:-62117581 Msa0131330:intron
AAGATCCAATAGTGTGAATG+CGG 0.655159 1_3:+62125177 None:intergenic
GCCGGTCACTTCAGGCAGAG+AGG 0.655548 1_3:-62117029 Msa0131330:CDS
GAGTATGGACAGTCATTGAG+AGG 0.659470 1_3:+62116663 None:intergenic
ATGCAAACGTGTATCAACTG+AGG 0.661308 1_3:-62120040 Msa0131330:CDS
GAGTAATAATAGTAACAACT+CGG 0.668165 1_3:-62116983 Msa0131330:CDS
TTGCAATACCATTGAAAACG+GGG 0.677227 1_3:-62116801 Msa0131330:three_prime_UTR
GATGTAAAAGAGCAACAACA+AGG 0.680608 1_3:-62124155 Msa0131330:CDS
GGATGCATGTGCTTCAGGGA+TGG 0.680755 1_3:-62123049 Msa0131330:CDS
TCACCTCTCAGACTGCTCGG+TGG 0.683389 1_3:-62124240 Msa0131330:intron
GCTCCAATATGAAGAAGAGG+TGG 0.684488 1_3:-62116961 Msa0131330:exon
TCGGAAACAGAACTAGCTAG+AGG 0.687895 1_3:+62124200 None:intergenic
TAGTTCACATAGAAGAAACA+AGG 0.691456 1_3:-62125219 Msa0131330:five_prime_UTR
GCCCATCAGTGATTACAAGG+AGG 0.736966 1_3:-62124378 Msa0131330:CDS
GCAAACGTGTATCAACTGAG+GGG 0.772676 1_3:-62120038 Msa0131330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_3:62118844-62118863 Msa0131330:intron 0.0%
!!! TTATTTTATTTTTTAAAGTG+AGG - chr1_3:62117202-62117221 Msa0131330:intron 10.0%
!! ATATATATATATATATGGTT+CGG - chr1_3:62118849-62118868 Msa0131330:intron 10.0%
!! AAGAGAATTTAAATAATTAA+TGG + chr1_3:62120870-62120889 None:intergenic 10.0%
!! TTCTTCAAAAAAAAAAAAAA+AGG + chr1_3:62121963-62121982 None:intergenic 10.0%
!! TTGAAAAAAATGTAATATTT+AGG + chr1_3:62124256-62124275 None:intergenic 10.0%
!! ATATATTATAGAATAGTAAA+TGG + chr1_3:62124492-62124511 None:intergenic 10.0%
!! CTATTCTATAATATATAAAT+AGG - chr1_3:62124496-62124515 Msa0131330:exon 10.0%
!!! TTGATTCATTTTTAAAAATA+TGG + chr1_3:62124652-62124671 None:intergenic 10.0%
!!! GATAACTTTAAAAGAAAAAA+AGG + chr1_3:62116706-62116725 None:intergenic 15.0%
!! ATAATCTACTTAATAAAGAA+CGG + chr1_3:62117869-62117888 None:intergenic 15.0%
!! TAATAATAAAAAAAAGACTC+AGG - chr1_3:62119023-62119042 Msa0131330:intron 15.0%
!! AATAATAAAAAAAAGACTCA+GGG - chr1_3:62119024-62119043 Msa0131330:intron 15.0%
!!! AAAAATTAGTTACTGATTAA+GGG + chr1_3:62120143-62120162 None:intergenic 15.0%
!!! AAAAACTTAAAAACAGATTT+TGG - chr1_3:62122092-62122111 Msa0131330:intron 15.0%
!!! TTAAAAATTTGCTGAAAAAT+GGG + chr1_3:62122313-62122332 None:intergenic 15.0%
!!! TTTAAAAATTTGCTGAAAAA+TGG + chr1_3:62122314-62122333 None:intergenic 15.0%
!!! TTGTTATTGTATATATTGTT+GGG - chr1_3:62122478-62122497 Msa0131330:CDS 15.0%
!!! GATGAATTATTTTCTTTTAT+AGG - chr1_3:62122500-62122519 Msa0131330:CDS 15.0%
!!! TTAGATTTTCTTTGTATATA+GGG + chr1_3:62122662-62122681 None:intergenic 15.0%
!!! TTTAGATTTTCTTTGTATAT+AGG + chr1_3:62122663-62122682 None:intergenic 15.0%
!! ATATACAAAGAAAATCTAAA+TGG - chr1_3:62122663-62122682 Msa0131330:intron 15.0%
!! TATTACTATTCTTTACAAAT+CGG + chr1_3:62123001-62123020 None:intergenic 15.0%
!! AATATTATACCAACTATTAT+CGG + chr1_3:62123254-62123273 None:intergenic 15.0%
!! AAAAAGGAAAAAAAGAAAGA+GGG + chr1_3:62116690-62116709 None:intergenic 20.0%
!! AAAAAAGGAAAAAAAGAAAG+AGG + chr1_3:62116691-62116710 None:intergenic 20.0%
!!! TTCTTCCATTTTTAAATTGT+TGG - chr1_3:62116800-62116819 Msa0131330:three_prime_UTR 20.0%
!! TGATACCAACAATTTAAAAA+TGG + chr1_3:62116808-62116827 None:intergenic 20.0%
!! AATGCAAGAGATTAATTAAT+TGG + chr1_3:62116856-62116875 None:intergenic 20.0%
!!! CATTTTTATTTTGTGTGTTT+AGG - chr1_3:62116872-62116891 Msa0131330:three_prime_UTR 20.0%
!!! ATGAAATTTGATAGTAGTTT+AGG - chr1_3:62117036-62117055 Msa0131330:CDS 20.0%
!!! TTTTAAAGTGAGGATTAAAT+TGG - chr1_3:62117212-62117231 Msa0131330:intron 20.0%
!!! ATAAGAGATTTTTGAAATGT+AGG - chr1_3:62117279-62117298 Msa0131330:intron 20.0%
!!! CTTAAAAGCAAGTTTTAATT+TGG - chr1_3:62117771-62117790 Msa0131330:intron 20.0%
!! AATAACATGAGTATGAAAAT+GGG + chr1_3:62117995-62118014 None:intergenic 20.0%
!! AAATAACATGAGTATGAAAA+TGG + chr1_3:62117996-62118015 None:intergenic 20.0%
!! CATTTGAAAAAAATAGAGAA+GGG + chr1_3:62118498-62118517 None:intergenic 20.0%
!! ACATTTGAAAAAAATAGAGA+AGG + chr1_3:62118499-62118518 None:intergenic 20.0%
!! GCATAAATTAATTTAACTGA+CGG - chr1_3:62118595-62118614 Msa0131330:intron 20.0%
!! TATTTCTTTAGTATCTGATA+AGG - chr1_3:62118658-62118677 Msa0131330:CDS 20.0%
!!! AAAATAGTCTTATCAAATAG+AGG + chr1_3:62118924-62118943 None:intergenic 20.0%
!! ATAATAAAAAAAAGACTCAG+GGG - chr1_3:62119025-62119044 Msa0131330:intron 20.0%
!! ATAGCAATACATTTAAAAAG+AGG + chr1_3:62119714-62119733 None:intergenic 20.0%
!! ACATAGTGTAATCAAATTAT+TGG - chr1_3:62119866-62119885 Msa0131330:intron 20.0%
!! CATAGTGTAATCAAATTATT+GGG - chr1_3:62119867-62119886 Msa0131330:intron 20.0%
!!! CAAAAATTAGTTACTGATTA+AGG + chr1_3:62120144-62120163 None:intergenic 20.0%
!! TATAAACTAAACATGAGAAA+TGG + chr1_3:62120599-62120618 None:intergenic 20.0%
!! CAAATTAAACACATATACTT+TGG + chr1_3:62120770-62120789 None:intergenic 20.0%
!! CAAAGTATATGTGTTTAATT+TGG - chr1_3:62120768-62120787 Msa0131330:intron 20.0%
!! AAACCATCTTAATTATATCT+TGG - chr1_3:62120941-62120960 Msa0131330:intron 20.0%
!! AACCATCTTAATTATATCTT+GGG - chr1_3:62120942-62120961 Msa0131330:intron 20.0%
!!! CATTTCATTTTTGTTTCAAA+AGG + chr1_3:62121020-62121039 None:intergenic 20.0%
!!! ATAAACTTTTAGCAATTTCT+AGG - chr1_3:62121233-62121252 Msa0131330:intron 20.0%
!!! TTGATTTGTTATGAAAGTTT+TGG - chr1_3:62121359-62121378 Msa0131330:intron 20.0%
!! AAAAATTACAAAAGAGTAAG+TGG + chr1_3:62122072-62122091 None:intergenic 20.0%
!!! TTTCAGCAAATTTTTAAATC+TGG - chr1_3:62122316-62122335 Msa0131330:intron 20.0%
!!! GTTGTTATTGTATATATTGT+TGG - chr1_3:62122477-62122496 Msa0131330:CDS 20.0%
!! ATTACTATTCTTTACAAATC+GGG + chr1_3:62123000-62123019 None:intergenic 20.0%
!! TAATTGAAAAATGATTCCAT+GGG + chr1_3:62123038-62123057 None:intergenic 20.0%
!! ATAATTGAAAAATGATTCCA+TGG + chr1_3:62123039-62123058 None:intergenic 20.0%
!!! TCTTCTTAAAAAACTTTTCA+GGG + chr1_3:62123187-62123206 None:intergenic 20.0%
!!! CTCTTTTTAAAAGGAAAAAA+GGG - chr1_3:62123361-62123380 Msa0131330:intron 20.0%
!!! AAATCATGTCGAATTATTTT+AGG + chr1_3:62123428-62123447 None:intergenic 20.0%
!!! TATTTATTAACTTTTGAGAC+TGG - chr1_3:62123568-62123587 Msa0131330:intron 20.0%
!! ATTAAAAATTAAGCAACATG+AGG - chr1_3:62123658-62123677 Msa0131330:intron 20.0%
!! TAGCACATAATATAATAAAG+TGG + chr1_3:62123850-62123869 None:intergenic 20.0%
!! ATATAAATAGGGAGATAAAT+TGG - chr1_3:62124508-62124527 Msa0131330:intron 20.0%
!!! AATTACCATATTTTGATAGA+CGG + chr1_3:62124589-62124608 None:intergenic 20.0%
! TAACAACAAAATTACAGCTA+CGG + chr1_3:62116944-62116963 None:intergenic 25.0%
!!! AGCTGTAATTTTGTTGTTAT+TGG - chr1_3:62116945-62116964 Msa0131330:three_prime_UTR 25.0%
! CTACTATCAAATTTCATCAA+GGG + chr1_3:62117033-62117052 None:intergenic 25.0%
! ACTACTATCAAATTTCATCA+AGG + chr1_3:62117034-62117053 None:intergenic 25.0%
!!! TTTTTTGTCAAATAACCTAG+TGG + chr1_3:62117150-62117169 None:intergenic 25.0%
! TGACAAAAAAAAATTGTGAC+TGG - chr1_3:62117160-62117179 Msa0131330:intron 25.0%
!!! TAAATTGGAGTTTTTTCTGA+AGG - chr1_3:62117227-62117246 Msa0131330:intron 25.0%
! AATTACATTTATCTGAACTC+TGG + chr1_3:62117674-62117693 None:intergenic 25.0%
! TAAATACGAAGTCTACAAAA+GGG + chr1_3:62117714-62117733 None:intergenic 25.0%
! GAAAGAAGAAAAGTTTACAT+TGG + chr1_3:62117918-62117937 None:intergenic 25.0%
! CTATAAACAAAAGAGTTTCA+TGG + chr1_3:62118096-62118115 None:intergenic 25.0%
! TCTCCATATTGTATTGAATT+AGG - chr1_3:62118133-62118152 Msa0131330:CDS 25.0%
! ATGCCTAATTCAATACAATA+TGG + chr1_3:62118139-62118158 None:intergenic 25.0%
! ATATACATAGTTAGACAAGA+TGG + chr1_3:62118204-62118223 None:intergenic 25.0%
!!! CTCTATTTTTTTCAAATGTG+TGG - chr1_3:62118500-62118519 Msa0131330:intron 25.0%
! AATAAAATGCGATAGTTGAT+GGG + chr1_3:62118960-62118979 None:intergenic 25.0%
! AAATAAAATGCGATAGTTGA+TGG + chr1_3:62118961-62118980 None:intergenic 25.0%
! GTTTATAGTAGTATCTTTAC+AGG - chr1_3:62118998-62119017 Msa0131330:intron 25.0%
! TAATAAAAAAAAGACTCAGG+GGG - chr1_3:62119026-62119045 Msa0131330:intron 25.0%
! TTGACAAAATAAAGATTCAG+AGG - chr1_3:62119099-62119118 Msa0131330:intron 25.0%
! TGACAAAATAAAGATTCAGA+GGG - chr1_3:62119100-62119119 Msa0131330:intron 25.0%
! GTGAACTTTCTTATTATGAT+AGG - chr1_3:62119463-62119482 Msa0131330:intron 25.0%
! CATATTAACTGTTGTTATGT+TGG - chr1_3:62119687-62119706 Msa0131330:intron 25.0%
! ATTAGTTCATTCTACAGAAA+CGG - chr1_3:62119839-62119858 Msa0131330:intron 25.0%
! GTAATTTGATACTAGGATAT+TGG - chr1_3:62119909-62119928 Msa0131330:intron 25.0%
! TATTAGATAATCAGTTTCAG+AGG + chr1_3:62120286-62120305 None:intergenic 25.0%
! TCACATAAACACATAAACTA+AGG - chr1_3:62120649-62120668 Msa0131330:intron 25.0%
! CACATAAACACATAAACTAA+GGG - chr1_3:62120650-62120669 Msa0131330:intron 25.0%
!!! AGTATATGTGTTTAATTTGG+TGG - chr1_3:62120771-62120790 Msa0131330:intron 25.0%
! TTTAATGAAATTGCTTATCG+TGG + chr1_3:62120918-62120937 None:intergenic 25.0%
! ACCATCTTAATTATATCTTG+GGG - chr1_3:62120943-62120962 Msa0131330:intron 25.0%
!!! TCATTTTTGTTTCAAAAGGA+TGG + chr1_3:62121016-62121035 None:intergenic 25.0%
!!! TGTATGTAATTTTGTTTAGC+TGG - chr1_3:62121416-62121435 Msa0131330:intron 25.0%
! CAACATGGAATATAAAAACT+TGG + chr1_3:62121580-62121599 None:intergenic 25.0%
! AATAAGAAAAGGAACTCATT+AGG + chr1_3:62121617-62121636 None:intergenic 25.0%
! CACATTCATGTAATAAGAAA+AGG + chr1_3:62121628-62121647 None:intergenic 25.0%
! ACTCTGTTAATGAAAAAACT+AGG - chr1_3:62121707-62121726 Msa0131330:intron 25.0%
!! ATTCATGTTCCATTATTTTC+AGG - chr1_3:62121730-62121749 Msa0131330:intron 25.0%
!! TTTTGAACAAAGTGTACATT+TGG - chr1_3:62121866-62121885 Msa0131330:intron 25.0%
!!! CTTAAAAACAGATTTTGGAA+AGG - chr1_3:62122097-62122116 Msa0131330:intron 25.0%
! ATTCTATGCTCAAAGATTAA+GGG + chr1_3:62122135-62122154 None:intergenic 25.0%
! TATTCTATGCTCAAAGATTA+AGG + chr1_3:62122136-62122155 None:intergenic 25.0%
! CCAAAGAAACATTAATTTCA+AGG + chr1_3:62122171-62122190 None:intergenic 25.0%
! CCTTGAAATTAATGTTTCTT+TGG - chr1_3:62122168-62122187 Msa0131330:intron 25.0%
! AATCAATCTAAATCAAAGAC+AGG - chr1_3:62122240-62122259 Msa0131330:intron 25.0%
! ATCAATCTAAATCAAAGACA+GGG - chr1_3:62122241-62122260 Msa0131330:intron 25.0%
! ATTAGATTCCAATATGTTCA+AGG - chr1_3:62122348-62122367 Msa0131330:intron 25.0%
! CTGTTAGGATATAGAATAAA+CGG - chr1_3:62122761-62122780 Msa0131330:intron 25.0%
! TGTTAGGATATAGAATAAAC+GGG - chr1_3:62122762-62122781 Msa0131330:intron 25.0%
! GGAATATTTGTATAGATAAG+AGG - chr1_3:62122808-62122827 Msa0131330:intron 25.0%
!!! ATAGTAATATCTTTTCTAGC+TGG - chr1_3:62123012-62123031 Msa0131330:intron 25.0%
!! GTCTTCTTAAAAAACTTTTC+AGG + chr1_3:62123188-62123207 None:intergenic 25.0%
!!! TTTTAAAAAGAGCCATTGTA+TGG + chr1_3:62123353-62123372 None:intergenic 25.0%
!! ATACAATGGCTCTTTTTAAA+AGG - chr1_3:62123352-62123371 Msa0131330:intron 25.0%
!!! GCTCTTTTTAAAAGGAAAAA+AGG - chr1_3:62123360-62123379 Msa0131330:intron 25.0%
! ATTCGACATGATTTCAATAT+AGG - chr1_3:62123434-62123453 Msa0131330:intron 25.0%
!!! ACCGTTGATTTGTTTAATAA+CGG - chr1_3:62123967-62123986 Msa0131330:intron 25.0%
! ACCGTTATTAAACAAATCAA+CGG + chr1_3:62123971-62123990 None:intergenic 25.0%
!!! TACTTATCCCTATTTTAGAA+TGG - chr1_3:62124039-62124058 Msa0131330:intron 25.0%
! ATTTAAACAAGAGATTGAGA+AGG - chr1_3:62124216-62124235 Msa0131330:CDS 25.0%
!!! ATTTTTGCTTTTCATCCTTA+AGG - chr1_3:62124606-62124625 Msa0131330:intron 25.0%
! ACTATTATTACTCTTGTTCT+CGG + chr1_3:62124807-62124826 None:intergenic 25.0%
! GAGTAATAATAGTAACAACT+CGG - chr1_3:62124814-62124833 Msa0131330:intron 25.0%
!! TCTAATACCTTGTTTATATC+TGG - chr1_3:62124895-62124914 Msa0131330:intron 25.0%
! TATTGCAATACCATTGAAAA+CGG - chr1_3:62124994-62125013 Msa0131330:intron 25.0%
! ACAATTCATGAAAAGGAAAA+AGG + chr1_3:62125049-62125068 None:intergenic 25.0%
! ATGTCATACAATTCATGAAA+AGG + chr1_3:62125056-62125075 None:intergenic 25.0%
TAGTTCACATAGAAGAAACA+AGG - chr1_3:62116578-62116597 Msa0131330:three_prime_UTR 30.0%
AAAGAAAGAGGGATAATCAT+GGG + chr1_3:62116679-62116698 None:intergenic 30.0%
AAAAGAAAGAGGGATAATCA+TGG + chr1_3:62116680-62116699 None:intergenic 30.0%
CAATAACATCTCTCTACAAT+GGG + chr1_3:62116921-62116940 None:intergenic 30.0%
TCTGAAGGAAAGGATTAAAT+TGG - chr1_3:62117242-62117261 Msa0131330:intron 30.0%
ATTGATTGTGGTCATTCTAA+TGG - chr1_3:62117450-62117469 Msa0131330:intron 30.0%
AAATACGAAGTCTACAAAAG+GGG + chr1_3:62117713-62117732 None:intergenic 30.0%
CTAAATACGAAGTCTACAAA+AGG + chr1_3:62117715-62117734 None:intergenic 30.0%
TTGTCTTGATCATTTGCTTA+TGG - chr1_3:62117813-62117832 Msa0131330:intron 30.0%
TGTCTTGATCATTTGCTTAT+GGG - chr1_3:62117814-62117833 Msa0131330:intron 30.0%
TTTACATTGGTACAACACAT+TGG + chr1_3:62117905-62117924 None:intergenic 30.0%
CATGAGTAGGAAAATGAATA+AGG + chr1_3:62117940-62117959 None:intergenic 30.0%
! CTTATTCATTTTCCTACTCA+TGG - chr1_3:62117938-62117957 Msa0131330:intron 30.0%
!!! TCCTACTCATGGAATTTTTT+AGG - chr1_3:62117949-62117968 Msa0131330:intron 30.0%
ACCTAAAAAATTCCATGAGT+AGG + chr1_3:62117953-62117972 None:intergenic 30.0%
ATATGGAGAATGTTTGAACT+AGG + chr1_3:62118122-62118141 None:intergenic 30.0%
ATTTGAGGGTCATAACAAAA+GGG + chr1_3:62118162-62118181 None:intergenic 30.0%
AATTTGAGGGTCATAACAAA+AGG + chr1_3:62118163-62118182 None:intergenic 30.0%
GGTTTGAAGAACAAATTTGT+TGG - chr1_3:62118283-62118302 Msa0131330:intron 30.0%
!! GAAGAACAAATTTGTTGGAA+AGG - chr1_3:62118288-62118307 Msa0131330:intron 30.0%
GGAAGGTTGTAAAAGTAAAA+TGG - chr1_3:62118439-62118458 Msa0131330:intron 30.0%
CTGTTAACAGTCATAATTGA+CGG - chr1_3:62118530-62118549 Msa0131330:intron 30.0%
TCTGTTACCATTGTTAATTG+TGG - chr1_3:62118682-62118701 Msa0131330:CDS 30.0%
TTGATTAGGTTCTATTGAGT+AGG - chr1_3:62119050-62119069 Msa0131330:intron 30.0%
TGATTAGGTTCTATTGAGTA+GGG - chr1_3:62119051-62119070 Msa0131330:intron 30.0%
TATTGAGTAGGGAATTCATT+CGG - chr1_3:62119062-62119081 Msa0131330:intron 30.0%
AAATAAAGATTCAGAGGGTT+AGG - chr1_3:62119105-62119124 Msa0131330:intron 30.0%
ACAAAATAATGACTCGTAGA+GGG - chr1_3:62119135-62119154 Msa0131330:intron 30.0%
!!! TCTTTTTTGCATTTCTCTGT+TGG - chr1_3:62119183-62119202 Msa0131330:intron 30.0%
!!! AGTTTTTTTCCCCTTTCTTT+TGG - chr1_3:62119214-62119233 Msa0131330:intron 30.0%
! GTCAAACTTCTAATTTTCTC+AGG - chr1_3:62119274-62119293 Msa0131330:intron 30.0%
! TTCTAATTTTCTCAGGAAAC+TGG - chr1_3:62119281-62119300 Msa0131330:intron 30.0%
! TCTAATTTTCTCAGGAAACT+GGG - chr1_3:62119282-62119301 Msa0131330:intron 30.0%
ACTCAAGTATCAACAAGTAT+TGG - chr1_3:62119364-62119383 Msa0131330:intron 30.0%
!!! ATGTGTTTTGTTTTTGTTGC+TGG - chr1_3:62119431-62119450 Msa0131330:intron 30.0%
GAAAAATCAAGAGAAAGTGA+AGG - chr1_3:62119485-62119504 Msa0131330:intron 30.0%
CTGTACACTGATATTTATAG+AGG - chr1_3:62119586-62119605 Msa0131330:intron 30.0%
! GTAATAGAAACTGGTTTCTA+TGG + chr1_3:62119785-62119804 None:intergenic 30.0%
GACTGTAATGTAATAGAAAC+TGG + chr1_3:62119794-62119813 None:intergenic 30.0%
TACCAGTGTAATTTGATACT+AGG - chr1_3:62119902-62119921 Msa0131330:intron 30.0%
ATCCTAGTATCAAATTACAC+TGG + chr1_3:62119907-62119926 None:intergenic 30.0%
ATTTGATACTAGGATATTGG+AGG - chr1_3:62119912-62119931 Msa0131330:intron 30.0%
TTTGATACTAGGATATTGGA+GGG - chr1_3:62119913-62119932 Msa0131330:intron 30.0%
ATTCAAGTGCTCAATTACAA+AGG + chr1_3:62119970-62119989 None:intergenic 30.0%
TTGCATCTTCTTAACTGTAA+TGG - chr1_3:62119989-62120008 Msa0131330:intron 30.0%
TGCATCTTCTTAACTGTAAT+GGG - chr1_3:62119990-62120009 Msa0131330:CDS 30.0%
AGAGAAGCAATACATTTAGA+AGG + chr1_3:62120038-62120057 None:intergenic 30.0%
!!! TGTTGTTTTGAGAAACACTT+AGG - chr1_3:62120065-62120084 Msa0131330:intron 30.0%
!!! GTTGTTTTGAGAAACACTTA+GGG - chr1_3:62120066-62120085 Msa0131330:intron 30.0%
!!! TTGTTTTGAGAAACACTTAG+GGG - chr1_3:62120067-62120086 Msa0131330:intron 30.0%
GAATGCCTAAAAAATTAAGC+AGG - chr1_3:62120332-62120351 Msa0131330:intron 30.0%
!!! AACCTCCTGCTTAATTTTTT+AGG + chr1_3:62120340-62120359 None:intergenic 30.0%
TCTGACTACAAAACCAAATT+TGG - chr1_3:62120362-62120381 Msa0131330:intron 30.0%
CTGACTACAAAACCAAATTT+GGG - chr1_3:62120363-62120382 Msa0131330:intron 30.0%
TGACTACAAAACCAAATTTG+GGG - chr1_3:62120364-62120383 Msa0131330:intron 30.0%
CAAACAAATTCAGATTTCCA+TGG + chr1_3:62120454-62120473 None:intergenic 30.0%
GCTAATTGAAAATTAGTCCT+TGG - chr1_3:62120482-62120501 Msa0131330:intron 30.0%
AATTGAAAATTAGTCCTTGG+TGG - chr1_3:62120485-62120504 Msa0131330:intron 30.0%
ATTGAAAATTAGTCCTTGGT+GGG - chr1_3:62120486-62120505 Msa0131330:intron 30.0%
! TGGTATCTAAATTCTGAAGA+AGG - chr1_3:62120559-62120578 Msa0131330:intron 30.0%
! GGTATCTAAATTCTGAAGAA+GGG - chr1_3:62120560-62120579 Msa0131330:intron 30.0%
GTTTATGTGTTTATGTGAGT+GGG + chr1_3:62120647-62120666 None:intergenic 30.0%
AGTTTATGTGTTTATGTGAG+TGG + chr1_3:62120648-62120667 None:intergenic 30.0%
TTAAACACATATACTTTGGC+AGG + chr1_3:62120766-62120785 None:intergenic 30.0%
ACCCCAAGATATAATTAAGA+TGG + chr1_3:62120947-62120966 None:intergenic 30.0%
ATTATATCTTGGGGTATAGT+TGG - chr1_3:62120952-62120971 Msa0131330:intron 30.0%
TTATATCTTGGGGTATAGTT+GGG - chr1_3:62120953-62120972 Msa0131330:intron 30.0%
TGTTAAAACTACCAAACGTT+TGG - chr1_3:62121038-62121057 Msa0131330:intron 30.0%
! TTTCTCAAGAAGTAACCTTT+TGG + chr1_3:62121143-62121162 None:intergenic 30.0%
TACTTCTTGAGAAACCTATT+TGG - chr1_3:62121149-62121168 Msa0131330:intron 30.0%
TCAGACAAAATAATTACCAG+CGG + chr1_3:62121186-62121205 None:intergenic 30.0%
CTGAATAGATGTATTTCAAC+AGG - chr1_3:62121202-62121221 Msa0131330:intron 30.0%
!!! GAAAATCTTTTTGGGATTCT+TGG - chr1_3:62121292-62121311 Msa0131330:intron 30.0%
TCAACAAGAATTTCTCAAAG+AGG + chr1_3:62121343-62121362 None:intergenic 30.0%
AAAAGAGACATTCTTCAAGA+CGG + chr1_3:62121456-62121475 None:intergenic 30.0%
AAAAATACTGTAGCGAGATT+AGG + chr1_3:62121484-62121503 None:intergenic 30.0%
!!! CAGTATTTTTTTTCCCTTTC+TGG - chr1_3:62121494-62121513 Msa0131330:intron 30.0%
TGCATTCTTCCTGAAAATAA+TGG + chr1_3:62121742-62121761 None:intergenic 30.0%
ATGTGTCATAAATTAAAGCG+TGG + chr1_3:62121899-62121918 None:intergenic 30.0%
!! TTTTGGAAAGGATATCAAAC+AGG - chr1_3:62122109-62122128 Msa0131330:intron 30.0%
TTTGAGCATAGAATAACAGA+TGG - chr1_3:62122141-62122160 Msa0131330:intron 30.0%
TTGAGCATAGAATAACAGAT+GGG - chr1_3:62122142-62122161 Msa0131330:intron 30.0%
!!! TTGCTACTTAGTTTTGAGTT+CGG - chr1_3:62122216-62122235 Msa0131330:intron 30.0%
GGTTAATATCCCTGAAATAT+AGG - chr1_3:62122586-62122605 Msa0131330:intron 30.0%
TAATATCCCTGAAATATAGG+TGG - chr1_3:62122589-62122608 Msa0131330:intron 30.0%
TGTATAGATAAGAGGATAGT+AGG - chr1_3:62122816-62122835 Msa0131330:intron 30.0%
AAATGAAGACATTTAGACTC+GGG + chr1_3:62122958-62122977 None:intergenic 30.0%
CAAATGAAGACATTTAGACT+CGG + chr1_3:62122959-62122978 None:intergenic 30.0%
GTCTTCATTTGGAAAATTGA+TGG - chr1_3:62122968-62122987 Msa0131330:intron 30.0%
! TTTTACCATCCGATAATAGT+TGG - chr1_3:62123242-62123261 Msa0131330:intron 30.0%
TTATACCAACTATTATCGGA+TGG + chr1_3:62123250-62123269 None:intergenic 30.0%
AACAATCATAGGATCCATAA+AGG + chr1_3:62123395-62123414 None:intergenic 30.0%
AGAACAAGTATCTCAGTTAT+TGG - chr1_3:62123721-62123740 Msa0131330:intron 30.0%
TTGTGACTGAAATGAAAAAG+AGG + chr1_3:62123822-62123841 None:intergenic 30.0%
TATGCACACATAACAAATCA+TGG + chr1_3:62123939-62123958 None:intergenic 30.0%
!! CCAAACACCATTCTAAAATA+GGG + chr1_3:62124049-62124068 None:intergenic 30.0%
! TTCTGATTTGAAACATAGTG+TGG - chr1_3:62124088-62124107 Msa0131330:intron 30.0%
! TCTGATTTGAAACATAGTGT+GGG - chr1_3:62124089-62124108 Msa0131330:intron 30.0%
TCAAACATGCATTGAATTTC+AGG - chr1_3:62124159-62124178 Msa0131330:CDS 30.0%
TGCTTGAATCATATCTTACT+TGG - chr1_3:62124285-62124304 Msa0131330:intron 30.0%
!! TTTTACCACAATGATGGAAA+AGG + chr1_3:62124335-62124354 None:intergenic 30.0%
! TCTGATTTTTACCACAATGA+TGG + chr1_3:62124341-62124360 None:intergenic 30.0%
TCATTGTGGTAAAAATCAGA+TGG - chr1_3:62124341-62124360 Msa0131330:CDS 30.0%
TAAATGGTCAAGAACAAAAC+AGG + chr1_3:62124476-62124495 None:intergenic 30.0%
GTGACTAACATATTGCTTTA+TGG + chr1_3:62124535-62124554 None:intergenic 30.0%
TTTCTCCGTCTATCAAAATA+TGG - chr1_3:62124581-62124600 Msa0131330:intron 30.0%
!! CTTTTCATCCTTAAGGTATT+CGG - chr1_3:62124613-62124632 Msa0131330:intron 30.0%
ATTGCAATACCATTGAAAAC+GGG - chr1_3:62124995-62125014 Msa0131330:intron 30.0%
TTCATGAAAAGGAAAAAGGA+CGG + chr1_3:62125045-62125064 None:intergenic 30.0%
AAGATCCAATAGTGTGAATG+CGG + chr1_3:62116623-62116642 None:intergenic 35.0%
AAGAAAGAGGGATAATCATG+GGG + chr1_3:62116678-62116697 None:intergenic 35.0%
GCAATAACATCTCTCTACAA+TGG + chr1_3:62116922-62116941 None:intergenic 35.0%
!!! TGGAGTTTTTTCTGAAGGAA+AGG - chr1_3:62117232-62117251 Msa0131330:intron 35.0%
!! TAATGGATTATCAAACGTGC+CGG - chr1_3:62117467-62117486 Msa0131330:intron 35.0%
TTTACATCATTGCTTCTGGA+TGG + chr1_3:62117630-62117649 None:intergenic 35.0%
! CTCTTTTACATCATTGCTTC+TGG + chr1_3:62117634-62117653 None:intergenic 35.0%
GATGTAAAAGAGCAACAACA+AGG - chr1_3:62117642-62117661 Msa0131330:intron 35.0%
ACAACACTCTATTGTAGAGT+CGG + chr1_3:62117797-62117816 None:intergenic 35.0%
GTCTTGATCATTTGCTTATG+GGG - chr1_3:62117815-62117834 Msa0131330:intron 35.0%
TCTTGATCATTTGCTTATGG+GGG - chr1_3:62117816-62117835 Msa0131330:intron 35.0%
AGATGGATAATTCAGAGAGA+GGG + chr1_3:62118187-62118206 None:intergenic 35.0%
AAGATGGATAATTCAGAGAG+AGG + chr1_3:62118188-62118207 None:intergenic 35.0%
TCAGAGCGGAAAAGATTTAT+AGG + chr1_3:62118245-62118264 None:intergenic 35.0%
! ACATTCAATTAGCTTCAGAG+CGG + chr1_3:62118259-62118278 None:intergenic 35.0%
TGAAGCTAATTGAATGTGCA+TGG - chr1_3:62118262-62118281 Msa0131330:intron 35.0%
GTATAAGAACGCTAAGCTAA+AGG + chr1_3:62118324-62118343 None:intergenic 35.0%
TGATTGAACAATTGTCCATG+AGG - chr1_3:62118353-62118372 Msa0131330:intron 35.0%
!! TTTACTTTTACAACCTTCCC+CGG + chr1_3:62118438-62118457 None:intergenic 35.0%
CAAATAGAGGCAAAGTTACT+CGG + chr1_3:62118911-62118930 None:intergenic 35.0%
GACAAAATAATGACTCGTAG+AGG - chr1_3:62119134-62119153 Msa0131330:intron 35.0%
TATGACATGCCAAAAGAAAG+GGG + chr1_3:62119226-62119245 None:intergenic 35.0%
GTATGACATGCCAAAAGAAA+GGG + chr1_3:62119227-62119246 None:intergenic 35.0%
TGTATGACATGCCAAAAGAA+AGG + chr1_3:62119228-62119247 None:intergenic 35.0%
! TTCTTTTGGCATGTCATACA+TGG - chr1_3:62119228-62119247 Msa0131330:intron 35.0%
! CTAATTTTCTCAGGAAACTG+GGG - chr1_3:62119283-62119302 Msa0131330:intron 35.0%
AATCAAGAGAAAGTGAAGGA+AGG - chr1_3:62119489-62119508 Msa0131330:intron 35.0%
TATCAGTGTACAGTAACAAG+TGG + chr1_3:62119579-62119598 None:intergenic 35.0%
GATAACTGAATGTGCTAAGT+CGG - chr1_3:62119660-62119679 Msa0131330:intron 35.0%
! ATGGGATTGTATTGCTCTTT+TGG - chr1_3:62120008-62120027 Msa0131330:CDS 35.0%
GCGTCAAAATAAAATGCTGA+TGG - chr1_3:62120239-62120258 Msa0131330:intron 35.0%
TGCCTAAAAAATTAAGCAGG+AGG - chr1_3:62120335-62120354 Msa0131330:intron 35.0%
CAAATTCAGATTTCCATGGA+TGG + chr1_3:62120450-62120469 None:intergenic 35.0%
ACATATACTTTGGCAGGATA+GGG + chr1_3:62120760-62120779 None:intergenic 35.0%
!! GTGTTTAATTTGGTGGTGTA+AGG - chr1_3:62120778-62120797 Msa0131330:intron 35.0%
AAACTACCAAACGTTTGGAA+TGG - chr1_3:62121043-62121062 Msa0131330:intron 35.0%
AGTTGTGCAAATATGATGTC+AGG + chr1_3:62121090-62121109 None:intergenic 35.0%
! AAGTAACCTTTTGGATGATC+AGG + chr1_3:62121134-62121153 None:intergenic 35.0%
CAGACAAAATAATTACCAGC+GGG + chr1_3:62121185-62121204 None:intergenic 35.0%
!! TCTCCTCTGGAAAATCTTTT+TGG - chr1_3:62121283-62121302 Msa0131330:intron 35.0%
!! CTCCTCTGGAAAATCTTTTT+GGG - chr1_3:62121284-62121303 Msa0131330:intron 35.0%
! ATCCCAAAAAGATTTTCCAG+AGG + chr1_3:62121289-62121308 None:intergenic 35.0%
TGGGATTCTTGGAAGTAATT+TGG - chr1_3:62121303-62121322 Msa0131330:intron 35.0%
CAAGAATTTCTCAAAGAGGA+GGG + chr1_3:62121339-62121358 None:intergenic 35.0%
ACAAGAATTTCTCAAAGAGG+AGG + chr1_3:62121340-62121359 None:intergenic 35.0%
GATAAAGAGGAGATACAACA+TGG + chr1_3:62121595-62121614 None:intergenic 35.0%
AGGAACTCATTAGGATAAAG+AGG + chr1_3:62121608-62121627 None:intergenic 35.0%
TAAGTTCCAAGATGCAATCA+AGG - chr1_3:62121808-62121827 Msa0131330:intron 35.0%
TTCAAACCTTGATTGCATCT+TGG + chr1_3:62121817-62121836 None:intergenic 35.0%
TACAAAAGAGTAAGTGGTGT+TGG + chr1_3:62122066-62122085 None:intergenic 35.0%
GAAAAATGGGTGTGCAAAAT+AGG + chr1_3:62122300-62122319 None:intergenic 35.0%
TCCAATATGTTCAAGGATAG+AGG - chr1_3:62122355-62122374 Msa0131330:intron 35.0%
TCCTCTATCCTTGAACATAT+TGG + chr1_3:62122359-62122378 None:intergenic 35.0%
AATTACTGCTTGATCTTTCG+CGG + chr1_3:62122393-62122412 None:intergenic 35.0%
TTAGCATCTATTCAATGCTC+TGG - chr1_3:62122552-62122571 Msa0131330:intron 35.0%
AATGCTCTGGCAAATTCTTT+GGG - chr1_3:62122565-62122584 Msa0131330:intron 35.0%
AAGCAAGTGATACTACTGTT+AGG - chr1_3:62122746-62122765 Msa0131330:intron 35.0%
TTCGAGTAGTTAGTTAGTAG+AGG - chr1_3:62122787-62122806 Msa0131330:intron 35.0%
ATAAGAGGATAGTAGGATAG+AGG - chr1_3:62122823-62122842 Msa0131330:intron 35.0%
TAAGAGGATAGTAGGATAGA+GGG - chr1_3:62122824-62122843 Msa0131330:intron 35.0%
CGAGTCTAAATGTCTTCATT+TGG - chr1_3:62122957-62122976 Msa0131330:intron 35.0%
!! TAGCAATGGCAATTGCTTTT+TGG + chr1_3:62123076-62123095 None:intergenic 35.0%
TAGCAAAGAGAAGTTAGCAA+TGG + chr1_3:62123090-62123109 None:intergenic 35.0%
! TGTTTTACTGCACCATACAA+TGG - chr1_3:62123338-62123357 Msa0131330:intron 35.0%
GCTCAACAAGAAACAATCAT+AGG + chr1_3:62123406-62123425 None:intergenic 35.0%
CAGAATAAATGTCACCTTCT+GGG + chr1_3:62123518-62123537 None:intergenic 35.0%
ACAGAATAAATGTCACCTTC+TGG + chr1_3:62123519-62123538 None:intergenic 35.0%
ACAGTTGAAGCAAAAGTCAT+TGG - chr1_3:62123619-62123638 Msa0131330:intron 35.0%
AAGTGAATTGTTCACTTCAG+TGG - chr1_3:62124015-62124034 Msa0131330:intron 35.0%
!!! CCCTATTTTAGAATGGTGTT+TGG - chr1_3:62124046-62124065 Msa0131330:intron 35.0%
!! GCCAAACACCATTCTAAAAT+AGG + chr1_3:62124050-62124069 None:intergenic 35.0%
TCAGATGGCAAAATCAATGA+AGG - chr1_3:62124356-62124375 Msa0131330:CDS 35.0%
ATCAATGAAGGAACTCAAGA+AGG - chr1_3:62124368-62124387 Msa0131330:CDS 35.0%
ACTTATAGAGTTAGTTGACG+AGG - chr1_3:62124434-62124453 Msa0131330:CDS 35.0%
AAAAACTTGAATCGCTATGC+CGG - chr1_3:62124750-62124769 Msa0131330:intron 35.0%
CACTAGTCCAGATATAAACA+AGG + chr1_3:62124905-62124924 None:intergenic 35.0%
! CTTGTTTATATCTGGACTAG+TGG - chr1_3:62124903-62124922 Msa0131330:intron 35.0%
TTGCAATACCATTGAAAACG+GGG - chr1_3:62124996-62125015 Msa0131330:intron 35.0%
ATACGCAAAAATACCGAGTA+TGG + chr1_3:62125152-62125171 None:intergenic 35.0%
TACTACCGCATTCACACTAT+TGG - chr1_3:62116615-62116634 Msa0131330:three_prime_UTR 40.0%
!! TTCTTTTGATTCTTCCCGCT+AGG - chr1_3:62116648-62116667 Msa0131330:three_prime_UTR 40.0%
TAATCATGGGGAATACCTAG+CGG + chr1_3:62116666-62116685 None:intergenic 40.0%
CGTGCAACAATTTGTGATCT+GGG + chr1_3:62116752-62116771 None:intergenic 40.0%
ACGTGCAACAATTTGTGATC+TGG + chr1_3:62116753-62116772 None:intergenic 40.0%
CTATTTGCACTGCACTCTTT+CGG - chr1_3:62116776-62116795 Msa0131330:three_prime_UTR 40.0%
CTTTGCTTACAACAGCAAGA+AGG - chr1_3:62117079-62117098 Msa0131330:CDS 40.0%
ATGAATCAACTTCAGGAAGC+TGG + chr1_3:62117329-62117348 None:intergenic 40.0%
! TCCTGAAGTTGATTCATTGC+CGG - chr1_3:62117332-62117351 Msa0131330:intron 40.0%
! AAGTTGATTCATTGCCGGAT+GGG - chr1_3:62117337-62117356 Msa0131330:intron 40.0%
TCCTCCTTGTAATCACTGAT+GGG + chr1_3:62117423-62117442 None:intergenic 40.0%
ATCCTCCTTGTAATCACTGA+TGG + chr1_3:62117424-62117443 None:intergenic 40.0%
ATCAGTGATTACAAGGAGGA+TGG - chr1_3:62117423-62117442 Msa0131330:CDS 40.0%
! GAGGATGGTTTCATTGATTG+TGG - chr1_3:62117438-62117457 Msa0131330:CDS 40.0%
!! AATGGATTATCAAACGTGCC+GGG - chr1_3:62117468-62117487 Msa0131330:intron 40.0%
GTTCACTAATTTCGCTTACC+CGG + chr1_3:62117489-62117508 None:intergenic 40.0%
AAAGAGCAACAACAAGGAGA+AGG - chr1_3:62117648-62117667 Msa0131330:intron 40.0%
ATGTGTGCATGTCTACTTTC+TGG - chr1_3:62118056-62118075 Msa0131330:CDS 40.0%
TCAGAGAGAGGGTAATTTGA+GGG + chr1_3:62118176-62118195 None:intergenic 40.0%
TTCAGAGAGAGGGTAATTTG+AGG + chr1_3:62118177-62118196 None:intergenic 40.0%
!! TTACTTTTACAACCTTCCCC+GGG + chr1_3:62118437-62118456 None:intergenic 40.0%
GCTGCAACCACAATTAACAA+TGG + chr1_3:62118692-62118711 None:intergenic 40.0%
TAAAGGATGCATGTGCTTCA+GGG - chr1_3:62118744-62118763 Msa0131330:intron 40.0%
CAATGCATGCAGAGATATAC+AGG + chr1_3:62118820-62118839 None:intergenic 40.0%
CTGTATATCTCTGCATGCAT+TGG - chr1_3:62118818-62118837 Msa0131330:intron 40.0%
TTTGTTCTCTGCCTTTCTCT+CGG - chr1_3:62118880-62118899 Msa0131330:intron 40.0%
AGTAGGGAATTCATTCGGAA+GGG - chr1_3:62119067-62119086 Msa0131330:intron 40.0%
GCGTGCACTTAAATCAGAAA+AGG - chr1_3:62119325-62119344 Msa0131330:intron 40.0%
!! GTATTGGCTGAAAAAGATGC+AGG - chr1_3:62119380-62119399 Msa0131330:intron 40.0%
!! AGTGAAGGAAGGTATTTGAG+AGG - chr1_3:62119500-62119519 Msa0131330:intron 40.0%
CTAGAAGATCATGCTCACAT+CGG - chr1_3:62119627-62119646 Msa0131330:intron 40.0%
TGAGAAACACTTAGGGGAAA+TGG - chr1_3:62120073-62120092 Msa0131330:intron 40.0%
TGACGGCAAAAGCTACAAAA+AGG + chr1_3:62120185-62120204 None:intergenic 40.0%
TGACTCAAGCTTATCTCTGA+CGG + chr1_3:62120202-62120221 None:intergenic 40.0%
ATAAGCTTGAGTCACTATGC+AGG - chr1_3:62120208-62120227 Msa0131330:intron 40.0%
TAAGCTTGAGTCACTATGCA+GGG - chr1_3:62120209-62120228 Msa0131330:intron 40.0%
! AGTCAGATTAGCCCCAAATT+TGG + chr1_3:62120378-62120397 None:intergenic 40.0%
CTAAGTGATTTCGCATGTAG+TGG - chr1_3:62120399-62120418 Msa0131330:intron 40.0%
! AAAATTAGTCCTTGGTGGGT+TGG - chr1_3:62120490-62120509 Msa0131330:intron 40.0%
!! AAATTAGTCCTTGGTGGGTT+GGG - chr1_3:62120491-62120510 Msa0131330:intron 40.0%
ACTAAACATGAGAAATGGCC+AGG + chr1_3:62120594-62120613 None:intergenic 40.0%
!!! TGTTAGTTTTGCACTAGAGG+TGG + chr1_3:62120623-62120642 None:intergenic 40.0%
!!! GGATGTTAGTTTTGCACTAG+AGG + chr1_3:62120626-62120645 None:intergenic 40.0%
CACATATACTTTGGCAGGAT+AGG + chr1_3:62120761-62120780 None:intergenic 40.0%
! TACCAAACGTTTGGAATGGA+GGG - chr1_3:62121047-62121066 Msa0131330:intron 40.0%
CACTTTCCTGATCATCCAAA+AGG - chr1_3:62121125-62121144 Msa0131330:intron 40.0%
AATAATTACCAGCGGGCATT+GGG + chr1_3:62121178-62121197 None:intergenic 40.0%
AAATAATTACCAGCGGGCAT+TGG + chr1_3:62121179-62121198 None:intergenic 40.0%
TGGTTGTTGCTACTGATATG+TGG - chr1_3:62121536-62121555 Msa0131330:intron 40.0%
ACATGAATGTGACTTCTACC+TGG - chr1_3:62121637-62121656 Msa0131330:intron 40.0%
ATGCAAACGTGTATCAACTG+AGG - chr1_3:62121757-62121776 Msa0131330:intron 40.0%
TGCAAACGTGTATCAACTGA+GGG - chr1_3:62121758-62121777 Msa0131330:intron 40.0%
CTAAACTAGCACACCCAAAT+TGG - chr1_3:62121984-62122003 Msa0131330:intron 40.0%
! ATTCTCTCTGGTGCCAATTT+GGG + chr1_3:62122000-62122019 None:intergenic 40.0%
ATTACTGCTTGATCTTTCGC+GGG + chr1_3:62122392-62122411 None:intergenic 40.0%
CAATGCTCTGGCAAATTCTT+TGG - chr1_3:62122564-62122583 Msa0131330:intron 40.0%
TCTAAATGGTGCCTAGTTGA+TGG - chr1_3:62122677-62122696 Msa0131330:intron 40.0%
TTGATGGAAACTGGTAGGAA+TGG - chr1_3:62122693-62122712 Msa0131330:intron 40.0%
GAAATAGAGAGATCCACCAA+GGG + chr1_3:62122922-62122941 None:intergenic 40.0%
AGAAATAGAGAGATCCACCA+AGG + chr1_3:62122923-62122942 None:intergenic 40.0%
TGCTAACTTCTCTTTGCTAC+AGG - chr1_3:62123091-62123110 Msa0131330:CDS 40.0%
TGATTGCCTTTCTCAGCTAA+AGG - chr1_3:62123145-62123164 Msa0131330:intron 40.0%
AAAGGGAACACGTTCCTTTA+TGG - chr1_3:62123378-62123397 Msa0131330:intron 40.0%
AGAGAAATTCCAACAGTTCC+AGG - chr1_3:62123784-62123803 Msa0131330:intron 40.0%
AAAAAACCACCTGGAACTGT+TGG + chr1_3:62123796-62123815 None:intergenic 40.0%
AAGAGGACAAAAAAACCACC+TGG + chr1_3:62123805-62123824 None:intergenic 40.0%
!! AAATCAGAACCAGAAGTGCT+AGG + chr1_3:62124077-62124096 None:intergenic 40.0%
CAATGAGACCGAATACCTTA+AGG + chr1_3:62124624-62124643 None:intergenic 40.0%
! TAAGGTATTCGGTCTCATTG+CGG - chr1_3:62124624-62124643 Msa0131330:intron 40.0%
CAACCACCTCTTCTTCATAT+TGG + chr1_3:62124842-62124861 None:intergenic 40.0%
GGTTGCAAACAACTTCTAGA+AGG - chr1_3:62124857-62124876 Msa0131330:intron 40.0%
! GCAAACAACTTCTAGAAGGA+AGG - chr1_3:62124861-62124880 Msa0131330:intron 40.0%
!! TGGCATGTCTTGGTTTGTTA+GGG - chr1_3:62124923-62124942 Msa0131330:intron 40.0%
!! CATTGCTTTTGTGCAAACTG+AGG + chr1_3:62125079-62125098 None:intergenic 40.0%
! ATTTTGCTGGAAACTTGGCT+TGG - chr1_3:62125108-62125127 Msa0131330:intron 40.0%
! TTTTGCTGGAAACTTGGCTT+GGG - chr1_3:62125109-62125128 Msa0131330:intron 40.0%
TCTCAATGACTGTCCATACT+CGG - chr1_3:62125136-62125155 Msa0131330:intron 40.0%
! TTTTGCGTATGCAGTGTGTT+TGG - chr1_3:62125162-62125181 Msa0131330:five_prime_UTR 40.0%
!!! ATGCAGTGTGTTTGGTGTTT+TGG - chr1_3:62125170-62125189 Msa0131330:five_prime_UTR 40.0%
!!! TGCAGTGTGTTTGGTGTTTT+GGG - chr1_3:62125171-62125190 Msa0131330:five_prime_UTR 40.0%
AATCATGGGGAATACCTAGC+GGG + chr1_3:62116665-62116684 None:intergenic 45.0%
AACAGCAAGAAGGTAGCTGT+AGG - chr1_3:62117089-62117108 Msa0131330:CDS 45.0%
ACAGCAAGAAGGTAGCTGTA+GGG - chr1_3:62117090-62117109 Msa0131330:CDS 45.0%
AGTGGCGAGAATAGAATTGC+AGG + chr1_3:62117132-62117151 None:intergenic 45.0%
GCAATTCTATTCTCGCCACT+AGG - chr1_3:62117132-62117151 Msa0131330:intron 45.0%
TCCGGCAATGAATCAACTTC+AGG + chr1_3:62117336-62117355 None:intergenic 45.0%
! GAAGTTGATTCATTGCCGGA+TGG - chr1_3:62117336-62117355 Msa0131330:intron 45.0%
GAAGCCCATCAGTGATTACA+AGG - chr1_3:62117416-62117435 Msa0131330:CDS 45.0%
! TTTTCACCTCTCAGACTGCT+CGG - chr1_3:62117554-62117573 Msa0131330:intron 45.0%
TCGGAAACAGAACTAGCTAG+AGG + chr1_3:62117600-62117619 None:intergenic 45.0%
!!! TGGAATTTTTTAGGTGCCCC+TGG - chr1_3:62117958-62117977 Msa0131330:intron 45.0%
!!! GGAATTTTTTAGGTGCCCCT+GGG - chr1_3:62117959-62117978 Msa0131330:intron 45.0%
TAGACATGCACACATCAGCA+AGG + chr1_3:62118051-62118070 None:intergenic 45.0%
TCTCTTGAGGTTACAAGGTC+AGG + chr1_3:62118399-62118418 None:intergenic 45.0%
GACCTTGTAACCTCAAGAGA+CGG - chr1_3:62118399-62118418 Msa0131330:intron 45.0%
GATTTGAACTCCGTCTCTTG+AGG + chr1_3:62118412-62118431 None:intergenic 45.0%
! TACTTTTACAACCTTCCCCG+GGG + chr1_3:62118436-62118455 None:intergenic 45.0%
GGTTGCAGCTAAACAACCTT+TGG - chr1_3:62118703-62118722 Msa0131330:intron 45.0%
!! GACAAAAGCACTGCCTGTAA+AGG - chr1_3:62118727-62118746 Msa0131330:intron 45.0%
GAAGCACATGCATCCTTTAC+AGG + chr1_3:62118743-62118762 None:intergenic 45.0%
GTAAAGGATGCATGTGCTTC+AGG - chr1_3:62118743-62118762 Msa0131330:intron 45.0%
AAGACTCAGGGGGTTTGATT+AGG - chr1_3:62119036-62119055 Msa0131330:intron 45.0%
GAGTAGGGAATTCATTCGGA+AGG - chr1_3:62119066-62119085 Msa0131330:intron 45.0%
TGTCATACATGGCTACGTTC+AGG - chr1_3:62119239-62119258 Msa0131330:intron 45.0%
GAAACTGGGGAAAAACGCAA+GGG - chr1_3:62119296-62119315 Msa0131330:intron 45.0%
TGGCTGAAAAAGATGCAGGT+TGG - chr1_3:62119384-62119403 Msa0131330:intron 45.0%
!!! CGGGTTTTAGTTTCCATCCA+TGG - chr1_3:62120434-62120453 Msa0131330:intron 45.0%
TGTACACAAGTGCCTCATCA+AGG + chr1_3:62120532-62120551 None:intergenic 45.0%
GGGGTATAGTTGGGAAACAA+AGG - chr1_3:62120962-62120981 Msa0131330:intron 45.0%
! CTACCAAACGTTTGGAATGG+AGG - chr1_3:62121046-62121065 Msa0131330:intron 45.0%
TAGGCCTCACATTTGCATTC+AGG - chr1_3:62121252-62121271 Msa0131330:intron 45.0%
AGGCCTCACATTTGCATTCA+GGG - chr1_3:62121253-62121272 Msa0131330:intron 45.0%
TTGCCCTGAATGCAAATGTG+AGG + chr1_3:62121259-62121278 None:intergenic 45.0%
GGACATGAAAGAGCCAGAAA+GGG + chr1_3:62121510-62121529 None:intergenic 45.0%
AGGACATGAAAGAGCCAGAA+AGG + chr1_3:62121511-62121530 None:intergenic 45.0%
GCTCTTTCATGTCCTAGTCA+TGG - chr1_3:62121516-62121535 Msa0131330:intron 45.0%
CAGTAGCAACAACCATGACT+AGG + chr1_3:62121531-62121550 None:intergenic 45.0%
TGAATGTGACTTCTACCTGG+TGG - chr1_3:62121640-62121659 Msa0131330:intron 45.0%
AAGAATCTGATCACACCACC+AGG + chr1_3:62121658-62121677 None:intergenic 45.0%
GCAAACGTGTATCAACTGAG+GGG - chr1_3:62121759-62121778 Msa0131330:intron 45.0%
! GATTCTCTCTGGTGCCAATT+TGG + chr1_3:62122001-62122020 None:intergenic 45.0%
ACCAGAGAGAATCGAACCTA+AGG - chr1_3:62122008-62122027 Msa0131330:intron 45.0%
!! AGAGTAAGTGGTGTTGGCTT+GGG + chr1_3:62122060-62122079 None:intergenic 45.0%
!! AAGAGTAAGTGGTGTTGGCT+TGG + chr1_3:62122061-62122080 None:intergenic 45.0%
AAGAGTAGAGATGTCCATCC+AGG + chr1_3:62122275-62122294 None:intergenic 45.0%
TTAACCCACACCCACTTAGT+GGG - chr1_3:62122441-62122460 Msa0131330:CDS 45.0%
TTATCCCACTAAGTGGGTGT+GGG + chr1_3:62122448-62122467 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_3:62122454-62122473 None:intergenic 45.0%
! ACAAGCCTTATCCCACTAAG+TGG + chr1_3:62122455-62122474 None:intergenic 45.0%
ATCCCTGAAATATAGGTGGC+TGG - chr1_3:62122593-62122612 Msa0131330:intron 45.0%
TCCCTGAAATATAGGTGGCT+GGG - chr1_3:62122594-62122613 Msa0131330:intron 45.0%
ACCCAGCCACCTATATTTCA+GGG + chr1_3:62122598-62122617 None:intergenic 45.0%
AACCCAGCCACCTATATTTC+AGG + chr1_3:62122599-62122618 None:intergenic 45.0%
CCTACCAGTTTCCATCAACT+AGG + chr1_3:62122691-62122710 None:intergenic 45.0%
!! CCTAGTTGATGGAAACTGGT+AGG - chr1_3:62122688-62122707 Msa0131330:intron 45.0%
! CAGTGACTCTTTTGCAGAAG+AGG - chr1_3:62122893-62122912 Msa0131330:intron 45.0%
TTTGCAGAAGAGGAAACCCT+TGG - chr1_3:62122903-62122922 Msa0131330:intron 45.0%
!!! TATCTTTTCTAGCTGGCCCA+TGG - chr1_3:62123019-62123038 Msa0131330:intron 45.0%
TGCTACAGGATGTGAGTATC+AGG - chr1_3:62123105-62123124 Msa0131330:CDS 45.0%
TATCAGGCTCGAAGAACGAA+AGG - chr1_3:62123121-62123140 Msa0131330:CDS 45.0%
CGTTCTCCTTTAGCTGAGAA+AGG + chr1_3:62123154-62123173 None:intergenic 45.0%
ACATGAGGAAAGATCTGCTC+AGG - chr1_3:62123673-62123692 Msa0131330:intron 45.0%
GAAATTCCAACAGTTCCAGG+TGG - chr1_3:62123787-62123806 Msa0131330:intron 45.0%
! GTCGTCCTTTTCCATCATTG+TGG - chr1_3:62124327-62124346 Msa0131330:intron 45.0%
TCGGCTCCAATATGAAGAAG+AGG - chr1_3:62124833-62124852 Msa0131330:intron 45.0%
GCTCCAATATGAAGAAGAGG+TGG - chr1_3:62124836-62124855 Msa0131330:intron 45.0%
!! GTGGCATGTCTTGGTTTGTT+AGG - chr1_3:62124922-62124941 Msa0131330:intron 45.0%
! CTCTACTACCCCGTTTTCAA+TGG + chr1_3:62125007-62125026 None:intergenic 45.0%
! AATGAGACACGCGATTTTGC+TGG - chr1_3:62125095-62125114 Msa0131330:intron 45.0%
! ACGCGATTTTGCTGGAAACT+TGG - chr1_3:62125103-62125122 Msa0131330:intron 45.0%
GAGTATGGACAGTCATTGAG+AGG + chr1_3:62125137-62125156 None:intergenic 45.0%
!!! GCAGTGTGTTTGGTGTTTTG+GGG - chr1_3:62125172-62125191 Msa0131330:five_prime_UTR 45.0%
!!! CAGTGTGTTTGGTGTTTTGG+GGG - chr1_3:62125173-62125192 Msa0131330:five_prime_UTR 45.0%
!! TTAAAAAATAAAATAAAATC+AGG + chr1_3:62117198-62117217 None:intergenic 5.0%
!! AAAATTATTATTAATTAAAG+TGG + chr1_3:62118474-62118493 None:intergenic 5.0%
!! TATTCTATAATATATAAATA+GGG - chr1_3:62124497-62124516 Msa0131330:exon 5.0%
!! TCAGGAAGCTGGTTTGCTTC+TGG + chr1_3:62117318-62117337 None:intergenic 50.0%
!! ATTGCCGGATGGGTTTGTTG+AGG - chr1_3:62117347-62117366 Msa0131330:intron 50.0%
!! TTGCCGGATGGGTTTGTTGA+GGG - chr1_3:62117348-62117367 Msa0131330:intron 50.0%
AGTAGCAGGAGCAACAGGTT+CGG + chr1_3:62117379-62117398 None:intergenic 50.0%
TGTTCAGGAGTTGGAGTAGC+AGG + chr1_3:62117393-62117412 None:intergenic 50.0%
GGCTTCTCTTGTTCAGGAGT+TGG + chr1_3:62117402-62117421 None:intergenic 50.0%
!! CTGATGGGCTTCTCTTGTTC+AGG + chr1_3:62117408-62117427 None:intergenic 50.0%
GCCCATCAGTGATTACAAGG+AGG - chr1_3:62117419-62117438 Msa0131330:CDS 50.0%
GCTTCTGGATGGTTGAGACT+CGG + chr1_3:62117619-62117638 None:intergenic 50.0%
!! CAAAAGGGGCATCGATGGTT+AGG + chr1_3:62117699-62117718 None:intergenic 50.0%
!! GTCTACAAAAGGGGCATCGA+TGG + chr1_3:62117704-62117723 None:intergenic 50.0%
AATGGGACCTATTGCACCCA+GGG + chr1_3:62117978-62117997 None:intergenic 50.0%
AAATGGGACCTATTGCACCC+AGG + chr1_3:62117979-62117998 None:intergenic 50.0%
TCAGGCTCTTACCATTGAGC+TGG + chr1_3:62118381-62118400 None:intergenic 50.0%
CTCCGTCTCTTGAGGTTACA+AGG + chr1_3:62118404-62118423 None:intergenic 50.0%
! ACTTTTACAACCTTCCCCGG+GGG + chr1_3:62118435-62118454 None:intergenic 50.0%
! GGCAGTGCTTTTGTCTCCAA+AGG + chr1_3:62118722-62118741 None:intergenic 50.0%
GGAAACTGGGGAAAAACGCA+AGG - chr1_3:62119295-62119314 Msa0131330:intron 50.0%
! TTCGCATGTAGTGGAACACC+TGG - chr1_3:62120408-62120427 Msa0131330:intron 50.0%
! TGTAGTGGAACACCTGGTCA+CGG - chr1_3:62120414-62120433 Msa0131330:intron 50.0%
GGAAACTAAAACCCGTGACC+AGG + chr1_3:62120429-62120448 None:intergenic 50.0%
AGATGAAACCCAACCCACCA+AGG + chr1_3:62120502-62120521 None:intergenic 50.0%
CATCTTGCACTGCCTTGATG+AGG - chr1_3:62120517-62120536 Msa0131330:intron 50.0%
TGAAGAAGGGTAGCATGTCC+TGG - chr1_3:62120573-62120592 Msa0131330:intron 50.0%
CTCCCTCCATTCCAAACGTT+TGG + chr1_3:62121052-62121071 None:intergenic 50.0%
TCAGGGCAATTACTCTCCTC+TGG - chr1_3:62121270-62121289 Msa0131330:intron 50.0%
CAACTGAGGGGCAAAACTTG+AGG - chr1_3:62121771-62121790 Msa0131330:intron 50.0%
TGAGGGGCAAAACTTGAGGA+TGG - chr1_3:62121775-62121794 Msa0131330:intron 50.0%
GCCTTAGGTTCGATTCTCTC+TGG + chr1_3:62122012-62122031 None:intergenic 50.0%
GAATCGAACCTAAGGCCTTG+AGG - chr1_3:62122016-62122035 Msa0131330:intron 50.0%
AAAGACAGGGTGAGCATTCC+TGG - chr1_3:62122254-62122273 Msa0131330:intron 50.0%
GTTAACCCACACCCACTTAG+TGG - chr1_3:62122440-62122459 Msa0131330:CDS 50.0%
CTTATCCCACTAAGTGGGTG+TGG + chr1_3:62122449-62122468 None:intergenic 50.0%
CACACCCACTTAGTGGGATA+AGG - chr1_3:62122447-62122466 Msa0131330:CDS 50.0%
!! GGTGCCTAGTTGATGGAAAC+TGG - chr1_3:62122684-62122703 Msa0131330:intron 50.0%
TGAGCAGCAATATGCCCAGA+AGG - chr1_3:62123501-62123520 Msa0131330:intron 50.0%
CGTTTGCAGCTGACAACTGA+TGG - chr1_3:62123761-62123780 Msa0131330:intron 50.0%
TTGGCTGATCCTAGCACTTC+TGG - chr1_3:62124065-62124084 Msa0131330:intron 50.0%
!! TCTGGACTAGTGGCATGTCT+TGG - chr1_3:62124913-62124932 Msa0131330:intron 50.0%
GTGCCCTCAACAAACCCATC+CGG + chr1_3:62117354-62117373 None:intergenic 55.0%
GTTGGAGTAGCAGGAGCAAC+AGG + chr1_3:62117384-62117403 None:intergenic 55.0%
ATGGGACCTATTGCACCCAG+GGG + chr1_3:62117977-62117996 None:intergenic 55.0%
! TCCATGAGGTGCCAGCTCAA+TGG - chr1_3:62118367-62118386 Msa0131330:intron 55.0%
ACCATTGAGCTGGCACCTCA+TGG + chr1_3:62118371-62118390 None:intergenic 55.0%
AGACGGAGTTCAAATCCCCC+CGG - chr1_3:62118416-62118435 Msa0131330:intron 55.0%
! CTTTTACAACCTTCCCCGGG+GGG + chr1_3:62118434-62118453 None:intergenic 55.0%
GGATGCATGTGCTTCAGGGA+TGG - chr1_3:62118748-62118767 Msa0131330:intron 55.0%
ACTCGGAGAGTCCGAGAGAA+AGG + chr1_3:62118894-62118913 None:intergenic 55.0%
! GTAGTGGAACACCTGGTCAC+GGG - chr1_3:62120415-62120434 Msa0131330:intron 55.0%
GCACTTGTGTACAGAGCTGC+TGG - chr1_3:62120539-62120558 Msa0131330:intron 55.0%
!! CGGGCATTGGGCTTCCAAAT+AGG + chr1_3:62121166-62121185 None:intergenic 55.0%
TCGAACCTAAGGCCTTGAGG+AGG - chr1_3:62122019-62122038 Msa0131330:intron 55.0%
TTGCTCCTCCTCAAGGCCTT+AGG + chr1_3:62122027-62122046 None:intergenic 55.0%
ACAGGGTGAGCATTCCTGGA+TGG - chr1_3:62122258-62122277 Msa0131330:intron 55.0%
ACTGCTTGATCTTTCGCGGG+AGG + chr1_3:62122389-62122408 None:intergenic 55.0%
GCAGAAGAGGAAACCCTTGG+TGG - chr1_3:62122906-62122925 Msa0131330:intron 55.0%
GGGAGGGGTGAAACAAATGC+AGG + chr1_3:62123284-62123303 None:intergenic 55.0%
! CAGCTTTTGAGCTGTGGGAG+GGG + chr1_3:62123299-62123318 None:intergenic 55.0%
! CCAGCTTTTGAGCTGTGGGA+GGG + chr1_3:62123300-62123319 None:intergenic 55.0%
CCTCCCACAGCTCAAAAGCT+GGG - chr1_3:62123298-62123317 Msa0131330:intron 55.0%
! GAGCCCAGCTTTTGAGCTGT+GGG + chr1_3:62123304-62123323 None:intergenic 55.0%
! AGAGCCCAGCTTTTGAGCTG+TGG + chr1_3:62123305-62123324 None:intergenic 55.0%
CGAGCGCTTGAAGAAACAGC+TGG - chr1_3:62124706-62124725 Msa0131330:intron 55.0%
ATCGCTATGCCGGTCACTTC+AGG - chr1_3:62124760-62124779 Msa0131330:intron 55.0%
TCCTCTCTGCCTGAAGTGAC+CGG + chr1_3:62124772-62124791 None:intergenic 55.0%
TCACCTCTCAGACTGCTCGG+TGG - chr1_3:62117557-62117576 Msa0131330:intron 60.0%
! CTCTCAGACTGCTCGGTGGA+GGG - chr1_3:62117561-62117580 Msa0131330:intron 60.0%
TAGGTGCCCCTGGGTGCAAT+AGG - chr1_3:62117968-62117987 Msa0131330:intron 60.0%
GACGGAGTTCAAATCCCCCC+GGG - chr1_3:62118417-62118436 Msa0131330:intron 60.0%
ACGGAGTTCAAATCCCCCCG+GGG - chr1_3:62118418-62118437 Msa0131330:intron 60.0%
AGTTCAAATCCCCCCGGGGA+AGG - chr1_3:62118422-62118441 Msa0131330:intron 60.0%
TTTGGAAGCCCAATGCCCGC+TGG - chr1_3:62121167-62121186 Msa0131330:intron 60.0%
GCTTGATCTTTCGCGGGAGG+TGG + chr1_3:62122386-62122405 None:intergenic 60.0%
CCCTCCCACAGCTCAAAAGC+TGG - chr1_3:62123297-62123316 Msa0131330:intron 60.0%
! CCCAGCTTTTGAGCTGTGGG+AGG + chr1_3:62123301-62123320 None:intergenic 60.0%
CCTCCACCGAGCAGTCTGAG+AGG + chr1_3:62117563-62117582 None:intergenic 65.0%
! CCTCTCAGACTGCTCGGTGG+AGG - chr1_3:62117560-62117579 Msa0131330:intron 65.0%
GCCGGTCACTTCAGGCAGAG+AGG - chr1_3:62124768-62124787 Msa0131330:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 62116553 62125266 62116553 ID=Msa0131330;Name=Msa0131330
chr1_3 mRNA 62116553 62125266 62116553 ID=Msa0131330-mRNA-1;Parent=Msa0131330;Name=Msa0131330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=122|0.91|0.92|1|0.91|0.92|13|419|431
chr1_3 exon 62116553 62117115 62116553 ID=Msa0131330-mRNA-1:exon:20669;Parent=Msa0131330-mRNA-1
chr1_3 exon 62117364 62117459 62117364 ID=Msa0131330-mRNA-1:exon:20668;Parent=Msa0131330-mRNA-1
chr1_3 exon 62117582 62117638 62117582 ID=Msa0131330-mRNA-1:exon:20667;Parent=Msa0131330-mRNA-1
chr1_3 exon 62118014 62118196 62118014 ID=Msa0131330-mRNA-1:exon:20666;Parent=Msa0131330-mRNA-1
chr1_3 exon 62118297 62118363 62118297 ID=Msa0131330-mRNA-1:exon:20665;Parent=Msa0131330-mRNA-1
chr1_3 exon 62118642 62118706 62118642 ID=Msa0131330-mRNA-1:exon:20664;Parent=Msa0131330-mRNA-1
chr1_3 exon 62119990 62120067 62119990 ID=Msa0131330-mRNA-1:exon:20663;Parent=Msa0131330-mRNA-1
chr1_3 exon 62121559 62121626 62121559 ID=Msa0131330-mRNA-1:exon:20662;Parent=Msa0131330-mRNA-1
chr1_3 exon 62122418 62122523 62122418 ID=Msa0131330-mRNA-1:exon:20661;Parent=Msa0131330-mRNA-1
chr1_3 exon 62123023 62123150 62123023 ID=Msa0131330-mRNA-1:exon:20660;Parent=Msa0131330-mRNA-1
chr1_3 exon 62124132 62124251 62124132 ID=Msa0131330-mRNA-1:exon:20659;Parent=Msa0131330-mRNA-1
chr1_3 exon 62124330 62124518 62124330 ID=Msa0131330-mRNA-1:exon:20658;Parent=Msa0131330-mRNA-1
chr1_3 exon 62125150 62125266 62125150 ID=Msa0131330-mRNA-1:exon:20657;Parent=Msa0131330-mRNA-1
chr1_3 five_prime_UTR 62125150 62125266 62125150 ID=Msa0131330-mRNA-1:five_prime_utr;Parent=Msa0131330-mRNA-1
chr1_3 five_prime_UTR 62124514 62124518 62124514 ID=Msa0131330-mRNA-1:five_prime_utr;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62124330 62124513 62124330 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62124132 62124251 62124132 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62123023 62123150 62123023 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62122418 62122523 62122418 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62121559 62121626 62121559 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62119990 62120067 62119990 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62118642 62118706 62118642 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62118297 62118363 62118297 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62118014 62118196 62118014 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62117582 62117638 62117582 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62117364 62117459 62117364 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 CDS 62116972 62117115 62116972 ID=Msa0131330-mRNA-1:cds;Parent=Msa0131330-mRNA-1
chr1_3 three_prime_UTR 62116553 62116971 62116553 ID=Msa0131330-mRNA-1:three_prime_utr;Parent=Msa0131330-mRNA-1
Gene Sequence

>Msa0131330

ATGCAAAATCCAGAAGCAAACCAGCTTCCTGAAGTTGATTCATTGCCGGATGGGTTTGTTGAGGGCACTGCCGAACCTGTTGCTCCTGCTACTCCAACTCCTGAACAAGAGAAGCCCATCAGTGATTACAAGGAGGATGGTTTCATTGATTGTGGTCATTCTAATGGATTATCAAACGTGCCGGACTGCTCGGTGGAGGGACATAATGCAGCACCTCTAGCTAGTTCTGTTTCCGAGTCTCAACCATCCAGAAGCAATGATGTAAAAGAGCAACAACAAGGAGAAGGCCAGAGTTCAGATAAATTATCTGATAAGGTTCTGTTACCATTGTTAATTGTGGTTGCAGCTAAACAACCTTTGGAGACAAAAGCACTGCCTGTAAAGGATGCATGTGCTTCAGGGATGGTTGATTCTTCAAAAAACAAAAAATCAGAAACTGGGGAAAAACGCAAGGGTTCAAAGCGTGCACTTAAATCAGAAAAGGAGCTCTTAGAGTTTTCACTCAAGTATCAACAAGTATTGGCTGAAAAAGATGCAGCTTTTGCCGTCAGAGATAAGCTTGAGTCACTATGCAGGGAGCTACAGCGTCAAAATAAAATGCTGATGGAAGAATGCAAACGTGTATCAACTGAGGGGCAAAACTTGAGGATGGACTTGTCAGCTAAGTTCCAAGATGCAATCAAGGATGTGAGTATCAGGCTCGAAGAACGAAAGGATGATTGCCTTTCTCAGCTAAAGGAGAACGACATGTTAAGAAACAATTTAAAGCAACTTGCTGAGCAATATGAACTATCTGAGCAGCAATATGCCCAGAAGTTGAAGCAAAAGTCATTGGAGCTACAGATTGCAGAATTAAAAATTAAGCAACATGAGGAAAGATCTGCTCAGGAACAGTCACAAATGAAATTATATGCAGAACAAGTATCTCAGTTATTGGCGACTGAGAAGAATTTGCGTTTGCAGCTGACAACTGATGGAGAGAAATTCCAACAGTTCCAGGAAGCATTGACAAAGAGCAATGATGTATTTGAAACATTTAAACAAGAGATTGAGAAGATGGCAAAATCAATGAAGGAACTCAAGAAGGAGAATCAATTTTTGAAGAGTAAATCAGAAAAGTCTGATATTACACTTATAGAGTTAGTTGACGAGCGCGAGCGCTTGAAGAAACAGCTGGAGAAAACGAAAAATCAAAAAGAAAAACTTGAATCGCTATGCCGGTCACTTCAGGCAGAGAGGAAGCAAAGTTTATCCGAGAACAAGAGTAATAATAGTAACAACTCGGCTCCAATATGA

Protein sequence

>Msa0131330

MQNPEANQLPEVDSLPDGFVEGTAEPVAPATPTPEQEKPISDYKEDGFIDCGHSNGLSNVPDCSVEGHNAAPLASSVSESQPSRSNDVKEQQQGEGQSSDKLSDKVLLPLLIVVAAKQPLETKALPVKDACASGMVDSSKNKKSETGEKRKGSKRALKSEKELLEFSLKYQQVLAEKDAAFAVRDKLESLCRELQRQNKMLMEECKRVSTEGQNLRMDLSAKFQDAIKDVSIRLEERKDDCLSQLKENDMLRNNLKQLAEQYELSEQQYAQKLKQKSLELQIAELKIKQHEERSAQEQSQMKLYAEQVSQLLATEKNLRLQLTTDGEKFQQFQEALTKSNDVFETFKQEIEKMAKSMKELKKENQFLKSKSEKSDITLIELVDERERLKKQLEKTKNQKEKLESLCRSLQAERKQSLSENKSNNSNNSAPI*