AlfalfaGEDB | Msa0281740

M. sativa cultivar zhongmu-4 / Msa0281740

KEGG: -
GO: GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
PFAM: PF05558.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	XP_013463310.1	98.131	214	4	0	1	214	1	214	8.03e-137	392

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	sp\|Q96262\|PCAP1_ARATH	61.326	181	58	2	1	171	1	179	3.66e-54	176

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	B7FH09	98.131	214	4	0	1	214	1	214	3.83e-137	392

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032470	Msa0281740	0.805997	1.018709e-49	-8.615850e-47
Msa0055070	Msa0281740	0.800343	1.506631e-48	-8.615850e-47
Msa0174260	Msa0281740	0.804316	2.290616e-49	-8.615850e-47
Msa0189030	Msa0281740	0.804539	2.058333e-49	-8.615850e-47
Msa0191890	Msa0281740	0.805364	1.383735e-49	-8.615850e-47
Msa0200650	Msa0281740	0.923703	1.870681e-89	-8.615850e-47
Msa0202930	Msa0281740	0.809015	2.331838e-50	-8.615850e-47
Msa0235940	Msa0281740	0.800696	1.276835e-48	-8.615850e-47
Msa0240270	Msa0281740	0.809994	1.437243e-50	-8.615850e-47
Msa0281740	Msa0309270	0.811836	5.735656e-51	-8.615850e-47
Msa0281740	Msa0320860	0.999350	4.801651e-305	-8.615850e-47
Msa0281740	Msa0341230	0.804013	2.647794e-49	-8.615850e-47
Msa0281740	Msa0422180	0.805458	1.322064e-49	-8.615850e-47
Msa0281740	Msa0566350	0.829235	5.765312e-55	-8.615850e-47
Msa0281740	Msa0566750	0.830150	3.453913e-55	-8.615850e-47
Msa0281740	Msa0616550	0.822764	1.989656e-53	-8.615850e-47
Msa0281740	Msa0654310	0.831540	1.575391e-55	-8.615850e-47
Msa0281740	Msa0658680	0.810130	1.342948e-50	-8.615850e-47
Msa0281740	Msa0673120	0.808051	3.744420e-50	-8.615850e-47
Msa0281740	Msa0698440	0.810273	1.251206e-50	-8.615850e-47
Msa0281740	Msa0732600	0.809163	2.167174e-50	-8.615850e-47
Msa0281740	Msa0805420	0.820950	5.231774e-53	-8.615850e-47
Msa0281740	Msa0842770	0.810678	1.022709e-50	-8.615850e-47
Msa0281740	Msa0981040	0.809679	1.679594e-50	-8.615850e-47
Msa0281740	Msa1039760	0.809134	2.198235e-50	-8.615850e-47
Msa0281740	Msa1143020	0.805036	1.620355e-49	-8.615850e-47
Msa0281740	Msa1225600	0.801385	9.232314e-49	-8.615850e-47
Msa0281740	Msa1349450	0.828354	9.421476e-55	-8.615850e-47
Msa0281740	Msa1401270	0.806656	7.400098e-50	-8.615850e-47
Msa0281740	Msa1426710	0.801387	9.224073e-49	-8.615850e-47
Msa0281740	Msa1442790	0.825234	5.238595e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	MtrunA17_Chr2g0296431	98.131	214	4	0	1	214	1	214	7.38e-141	392

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	AT4G20260.8	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.1	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.3	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.2	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.9	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.7	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.10	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.6	68.243	148	43	2	1	145	1	147	4.95e-54	171
Msa0281740	AT4G20260.5	67.857	140	45	0	1	140	1	140	1.39e-53	169
Msa0281740	AT4G20260.4	60.989	182	58	3	1	171	1	180	1.93e-53	171

Find 50 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATAGAAGAACTTGTTAAAAT+TGG	0.213794	2_3:-17339555	Msa0281740:intron
TGTGAAAATGTGAATGTTTA+TGG	0.239691	2_3:-17338958	Msa0281740:three_prime_UTR
AGTTGTTGAAGAAGAGAAAA+AGG	0.260064	2_3:-17339258	Msa0281740:CDS
TTTGGACCAGCCTTAGTTTC+AGG	0.262260	2_3:-17339407	Msa0281740:CDS
TATGTCTGTGGTGCTTATTT+TGG	0.313228	2_3:-17340393	Msa0281740:five_prime_UTR
TCCTCCTCCCGCGGAGAAAC+AGG	0.321981	2_3:-17339168	Msa0281740:CDS
AAAGGAAAATAAAGCAAAAC+AGG	0.336266	2_3:+17338807	None:intergenic
AAGCAAAACAGGGACATATA+TGG	0.360009	2_3:+17338818	None:intergenic
TCAACAAACTTTCAAGCCTT+TGG	0.364448	2_3:+17339101	None:intergenic
CTTTGACTCATCAAAGGTCT+TGG	0.366152	2_3:+17340192	None:intergenic
GGAAGCAAAAGATGGGTTAC+TGG	0.373360	2_3:-17340291	Msa0281740:exon
TCAACTGCAGCCGGCTCAAC+CGG	0.383238	2_3:+17339137	None:intergenic
TCCTGTTTCTCCGCGGGAGG+AGG	0.385073	2_3:+17339167	None:intergenic
ATATGAAACAACAAACATAA+AGG	0.405905	2_3:+17338855	None:intergenic
TCTGAAGCATCATCCAAGTT+TGG	0.412649	2_3:-17339425	Msa0281740:CDS
AAACATTTGGAAGCAAAAGA+TGG	0.424068	2_3:-17340299	Msa0281740:exon
AATTGAATCTTCTGCAGAAA+AGG	0.424490	2_3:-17339219	Msa0281740:CDS
TGCAGAAAAGGTTGAAGAAA+AGG	0.428765	2_3:-17339207	Msa0281740:CDS
GTTATAAGAACTCAAGGTTA+AGG	0.434726	2_3:-17340334	Msa0281740:five_prime_UTR
GAAAACTGGACCTGAAACTA+AGG	0.436909	2_3:+17339397	None:intergenic
GGGAATCAATAAAGAGTTTG+AGG	0.437077	2_3:-17339997	Msa0281740:CDS
AACTAAGGCTGGTCCAAACT+TGG	0.441827	2_3:+17339412	None:intergenic
TTCTCCGCGGGAGGAGGAGC+CGG	0.468573	2_3:+17339173	None:intergenic
TTGTCAAGGAATTGTGACTT+TGG	0.469481	2_3:-17338902	Msa0281740:three_prime_UTR
CAAGACCTTTGATGAGTCAA+AGG	0.477303	2_3:-17340191	Msa0281740:intron
GCATGGTGTGTGTGCTGGAA+TGG	0.482118	2_3:-17340457	Msa0281740:five_prime_UTR
AAGGAATTGTGACTTTGGAT+TGG	0.488861	2_3:-17338897	Msa0281740:three_prime_UTR
AGCATCTTCAACTGAAATCA+AGG	0.494963	2_3:-17339931	Msa0281740:intron
TCCTCCTGTTTCTCCGCGGG+AGG	0.496545	2_3:+17339164	None:intergenic
ATTATGCATGGTGTGTGTGC+TGG	0.506644	2_3:-17340462	Msa0281740:five_prime_UTR
AGAAAAGGATGCAGCTGAGC+CGG	0.507989	2_3:-17339192	Msa0281740:CDS
TCTACTTGTTCAACTGCAGC+CGG	0.508607	2_3:+17339128	None:intergenic
ACAAACTTTCAAGCCTTTGG+TGG	0.520637	2_3:+17339104	None:intergenic
TTGATAGTTATAAGAACTCA+AGG	0.524120	2_3:-17340340	Msa0281740:five_prime_UTR
GTCAAAGAACGTGATGTAGC+AGG	0.529799	2_3:-17339612	Msa0281740:CDS
GGTTCTTCCCAAGATCAAGA+AGG	0.544230	2_3:-17340260	Msa0281740:CDS
AACATTTGGAAGCAAAAGAT+GGG	0.550046	2_3:-17340298	Msa0281740:exon
AAACAAGTGGTGTTAAAGAG+AGG	0.557539	2_3:-17339286	Msa0281740:CDS
TGTACATTTGGAATTATGCA+TGG	0.569569	2_3:-17340474	None:intergenic
TAAGAAAACAGCTGCTGCTG+AGG	0.571062	2_3:-17340218	Msa0281740:CDS
AACAAGTGGTGTTAAAGAGA+GGG	0.574339	2_3:-17339285	Msa0281740:CDS
ACAAACCTTTGACTCATCAA+AGG	0.584760	2_3:+17340186	None:intergenic
TCCTCCCGCGGAGAAACAGG+AGG	0.602952	2_3:-17339165	Msa0281740:CDS
ACTGGACCTGAAACTAAGGC+TGG	0.610443	2_3:+17339401	None:intergenic
AAAACAGAAGATGAAACAAG+TGG	0.618986	2_3:-17339299	Msa0281740:CDS
TGAGCCGGCTCCTCCTCCCG+CGG	0.659003	2_3:-17339177	Msa0281740:CDS
TGAACAAGTAGAACCACCAA+AGG	0.665776	2_3:-17339117	Msa0281740:CDS
TATATGTATATGTATGTCTG+TGG	0.676872	2_3:-17340405	Msa0281740:five_prime_UTR
GATGGGTTACTGGACAACAA+AGG	0.677203	2_3:-17340281	Msa0281740:CDS
AAGGAAAATAAAGCAAAACA+GGG	0.712132	2_3:+17338808	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAAGTTTTTATAACATTGT+AGG	+	chr2_3:17338853-17338872	None:intergenic	15.0%
!!!	TTTGCTTTTATATTTTGTTA+CGG	+	chr2_3:17339456-17339475	None:intergenic	15.0%
!!	AAGCAAAAAATATATGTATA+TGG	-	chr2_3:17339469-17339488	Msa0281740:intron	15.0%
!!	TCTTCAAAAATAAACAAATA+AGG	+	chr2_3:17339778-17339797	None:intergenic	15.0%
!!!	AAAAGTTTTTATAACATTGT+AGG	+	chr2_3:17338853-17338872	None:intergenic	15.0%
!!!	TTTGCTTTTATATTTTGTTA+CGG	+	chr2_3:17339456-17339475	None:intergenic	15.0%
!!	AAGCAAAAAATATATGTATA+TGG	-	chr2_3:17339469-17339488	Msa0281740:intron	15.0%
!!	TCTTCAAAAATAAACAAATA+AGG	+	chr2_3:17339778-17339797	None:intergenic	15.0%
!!	AATAGTTCATATATTTGATG+TGG	-	chr2_3:17339243-17339262	Msa0281740:CDS	20.0%
!!	AAGTAAAAATATCATGTATG+TGG	+	chr2_3:17339552-17339571	None:intergenic	20.0%
!!!	TGAAAATTTTCCATCAATAT+TGG	+	chr2_3:17339629-17339648	None:intergenic	20.0%
!!!	ATAGAAGAACTTGTTAAAAT+TGG	-	chr2_3:17339727-17339746	Msa0281740:intron	20.0%
!!!	GTAAAGTATTTATAGTTTTC+CGG	-	chr2_3:17339749-17339768	Msa0281740:intron	20.0%
!!!	ATATATATTTCAGATTTTCC+TGG	-	chr2_3:17339821-17339840	Msa0281740:intron	20.0%
!!!	CATTTTTCATTTTATTGTCA+AGG	-	chr2_3:17340366-17340385	Msa0281740:five_prime_UTR	20.0%
!!	ATATGAAACAACAAACATAA+AGG	+	chr2_3:17340430-17340449	None:intergenic	20.0%
!!	AATAGTTCATATATTTGATG+TGG	-	chr2_3:17339243-17339262	Msa0281740:CDS	20.0%
!!	AAGTAAAAATATCATGTATG+TGG	+	chr2_3:17339552-17339571	None:intergenic	20.0%
!!!	TGAAAATTTTCCATCAATAT+TGG	+	chr2_3:17339629-17339648	None:intergenic	20.0%
!!!	ATAGAAGAACTTGTTAAAAT+TGG	-	chr2_3:17339727-17339746	Msa0281740:intron	20.0%
!!!	GTAAAGTATTTATAGTTTTC+CGG	-	chr2_3:17339749-17339768	Msa0281740:intron	20.0%
!!!	ATATATATTTCAGATTTTCC+TGG	-	chr2_3:17339821-17339840	Msa0281740:intron	20.0%
!!!	CATTTTTCATTTTATTGTCA+AGG	-	chr2_3:17340366-17340385	Msa0281740:five_prime_UTR	20.0%
!!	ATATGAAACAACAAACATAA+AGG	+	chr2_3:17340430-17340449	None:intergenic	20.0%
!	TATATGTATATGTATGTCTG+TGG	-	chr2_3:17338877-17338896	Msa0281740:three_prime_UTR	25.0%
!!	TTGATAGTTATAAGAACTCA+AGG	-	chr2_3:17338942-17338961	Msa0281740:three_prime_UTR	25.0%
!	TTCATATATTTGATGTGGTT+CGG	-	chr2_3:17339248-17339267	Msa0281740:CDS	25.0%
!!	CTTTTATATTTTGTTACGGA+GGG	+	chr2_3:17339452-17339471	None:intergenic	25.0%
!	ACATGTATCTGGTTAAAATT+TGG	-	chr2_3:17339525-17339544	Msa0281740:intron	25.0%
!	CATGTATCTGGTTAAAATTT+GGG	-	chr2_3:17339526-17339545	Msa0281740:intron	25.0%
!	AAATAAACAAATAAGGTTGC+CGG	+	chr2_3:17339771-17339790	None:intergenic	25.0%
!	TTCTCAAAAACAAAGAAAAC+TGG	+	chr2_3:17339902-17339921	None:intergenic	25.0%
!!!	AGTTTTCTTTGTTTTTGAGA+AGG	-	chr2_3:17339901-17339920	Msa0281740:intron	25.0%
!	TGTGAAAATGTGAATGTTTA+TGG	-	chr2_3:17340324-17340343	Msa0281740:five_prime_UTR	25.0%
!	TATATGTATATGTATGTCTG+TGG	-	chr2_3:17338877-17338896	Msa0281740:three_prime_UTR	25.0%
!!	TTGATAGTTATAAGAACTCA+AGG	-	chr2_3:17338942-17338961	Msa0281740:three_prime_UTR	25.0%
!	TTCATATATTTGATGTGGTT+CGG	-	chr2_3:17339248-17339267	Msa0281740:CDS	25.0%
!!	CTTTTATATTTTGTTACGGA+GGG	+	chr2_3:17339452-17339471	None:intergenic	25.0%
!	ACATGTATCTGGTTAAAATT+TGG	-	chr2_3:17339525-17339544	Msa0281740:intron	25.0%
!	CATGTATCTGGTTAAAATTT+GGG	-	chr2_3:17339526-17339545	Msa0281740:intron	25.0%
!	AAATAAACAAATAAGGTTGC+CGG	+	chr2_3:17339771-17339790	None:intergenic	25.0%
!	TTCTCAAAAACAAAGAAAAC+TGG	+	chr2_3:17339902-17339921	None:intergenic	25.0%
!!!	AGTTTTCTTTGTTTTTGAGA+AGG	-	chr2_3:17339901-17339920	Msa0281740:intron	25.0%
!	TGTGAAAATGTGAATGTTTA+TGG	-	chr2_3:17340324-17340343	Msa0281740:five_prime_UTR	25.0%
	GTTATAAGAACTCAAGGTTA+AGG	-	chr2_3:17338948-17338967	Msa0281740:three_prime_UTR	30.0%
!!!	TTCCAAATGTTTTTTCTCTG+TGG	+	chr2_3:17338975-17338994	None:intergenic	30.0%
	AAACATTTGGAAGCAAAAGA+TGG	-	chr2_3:17338983-17339002	Msa0281740:three_prime_UTR	30.0%
	AACATTTGGAAGCAAAAGAT+GGG	-	chr2_3:17338984-17339003	Msa0281740:three_prime_UTR	30.0%
	TCAAAAACCTTCTTGATCTT+GGG	+	chr2_3:17339032-17339051	None:intergenic	30.0%
!	GCTTTTATATTTTGTTACGG+AGG	+	chr2_3:17339453-17339472	None:intergenic	30.0%
	TTAGACTAGATACATGTATC+TGG	-	chr2_3:17339514-17339533	Msa0281740:intron	30.0%
	GAAAAAGACACCAATATTGA+TGG	-	chr2_3:17339616-17339635	Msa0281740:CDS	30.0%
	AATATCACCTTTACAGAGTT+TGG	-	chr2_3:17339648-17339667	Msa0281740:intron	30.0%
	AAAACAGAAGATGAAACAAG+TGG	-	chr2_3:17339983-17340002	Msa0281740:CDS	30.0%
	AGTTGTTGAAGAAGAGAAAA+AGG	-	chr2_3:17340024-17340043	Msa0281740:intron	30.0%
	AATTGAATCTTCTGCAGAAA+AGG	-	chr2_3:17340063-17340082	Msa0281740:intron	30.0%
	GTTATAAGAACTCAAGGTTA+AGG	-	chr2_3:17338948-17338967	Msa0281740:three_prime_UTR	30.0%
!!!	TTCCAAATGTTTTTTCTCTG+TGG	+	chr2_3:17338975-17338994	None:intergenic	30.0%
	AAACATTTGGAAGCAAAAGA+TGG	-	chr2_3:17338983-17339002	Msa0281740:three_prime_UTR	30.0%
	AACATTTGGAAGCAAAAGAT+GGG	-	chr2_3:17338984-17339003	Msa0281740:three_prime_UTR	30.0%
	TCAAAAACCTTCTTGATCTT+GGG	+	chr2_3:17339032-17339051	None:intergenic	30.0%
!	GCTTTTATATTTTGTTACGG+AGG	+	chr2_3:17339453-17339472	None:intergenic	30.0%
	TTAGACTAGATACATGTATC+TGG	-	chr2_3:17339514-17339533	Msa0281740:intron	30.0%
	GAAAAAGACACCAATATTGA+TGG	-	chr2_3:17339616-17339635	Msa0281740:CDS	30.0%
	AATATCACCTTTACAGAGTT+TGG	-	chr2_3:17339648-17339667	Msa0281740:intron	30.0%
	AAAACAGAAGATGAAACAAG+TGG	-	chr2_3:17339983-17340002	Msa0281740:CDS	30.0%
	AGTTGTTGAAGAAGAGAAAA+AGG	-	chr2_3:17340024-17340043	Msa0281740:intron	30.0%
	AATTGAATCTTCTGCAGAAA+AGG	-	chr2_3:17340063-17340082	Msa0281740:intron	30.0%
!	TATGTCTGTGGTGCTTATTT+TGG	-	chr2_3:17338889-17338908	Msa0281740:three_prime_UTR	35.0%
	GACCACAGAGAAAAAACATT+TGG	-	chr2_3:17338970-17338989	Msa0281740:three_prime_UTR	35.0%
	CTCAAAAACCTTCTTGATCT+TGG	+	chr2_3:17339033-17339052	None:intergenic	35.0%
	ACAAACCTTTGACTCATCAA+AGG	+	chr2_3:17339099-17339118	None:intergenic	35.0%
!!!	TGTGGTTCGGTATTTTGTTT+AGG	-	chr2_3:17339261-17339280	Msa0281740:CDS	35.0%
!!	GTTCGGTATTTTGTTTAGGA+GGG	-	chr2_3:17339265-17339284	Msa0281740:CDS	35.0%
	GGGAATCAATAAAGAGTTTG+AGG	-	chr2_3:17339285-17339304	Msa0281740:CDS	35.0%
	AGCATCTTCAACTGAAATCA+AGG	-	chr2_3:17339351-17339370	Msa0281740:CDS	35.0%
	TCTTTGACCAAACTCTGTAA+AGG	+	chr2_3:17339658-17339677	None:intergenic	35.0%
!!!	GTTTTTGTTTCTGTAGTAGC+AGG	+	chr2_3:17339968-17339987	None:intergenic	35.0%
!	AAACAAGTGGTGTTAAAGAG+AGG	-	chr2_3:17339996-17340015	Msa0281740:CDS	35.0%
!	AACAAGTGGTGTTAAAGAGA+GGG	-	chr2_3:17339997-17340016	Msa0281740:CDS	35.0%
	TGCAGAAAAGGTTGAAGAAA+AGG	-	chr2_3:17340075-17340094	Msa0281740:intron	35.0%
	TCAACAAACTTTCAAGCCTT+TGG	+	chr2_3:17340184-17340203	None:intergenic	35.0%
	TTGTCAAGGAATTGTGACTT+TGG	-	chr2_3:17340380-17340399	Msa0281740:five_prime_UTR	35.0%
	AAGGAATTGTGACTTTGGAT+TGG	-	chr2_3:17340385-17340404	Msa0281740:five_prime_UTR	35.0%
	AAGCAAAACAGGGACATATA+TGG	+	chr2_3:17340467-17340486	None:intergenic	35.0%
!	TATGTCCCTGTTTTGCTTTA+TGG	-	chr2_3:17340469-17340488	Msa0281740:five_prime_UTR	35.0%
!	TATGTCTGTGGTGCTTATTT+TGG	-	chr2_3:17338889-17338908	Msa0281740:three_prime_UTR	35.0%
	GACCACAGAGAAAAAACATT+TGG	-	chr2_3:17338970-17338989	Msa0281740:three_prime_UTR	35.0%
	CTCAAAAACCTTCTTGATCT+TGG	+	chr2_3:17339033-17339052	None:intergenic	35.0%
	ACAAACCTTTGACTCATCAA+AGG	+	chr2_3:17339099-17339118	None:intergenic	35.0%
!!!	TGTGGTTCGGTATTTTGTTT+AGG	-	chr2_3:17339261-17339280	Msa0281740:CDS	35.0%
!!	GTTCGGTATTTTGTTTAGGA+GGG	-	chr2_3:17339265-17339284	Msa0281740:CDS	35.0%
	GGGAATCAATAAAGAGTTTG+AGG	-	chr2_3:17339285-17339304	Msa0281740:CDS	35.0%
	AGCATCTTCAACTGAAATCA+AGG	-	chr2_3:17339351-17339370	Msa0281740:CDS	35.0%
	TCTTTGACCAAACTCTGTAA+AGG	+	chr2_3:17339658-17339677	None:intergenic	35.0%
!!!	GTTTTTGTTTCTGTAGTAGC+AGG	+	chr2_3:17339968-17339987	None:intergenic	35.0%
!	AAACAAGTGGTGTTAAAGAG+AGG	-	chr2_3:17339996-17340015	Msa0281740:CDS	35.0%
!	AACAAGTGGTGTTAAAGAGA+GGG	-	chr2_3:17339997-17340016	Msa0281740:CDS	35.0%
	TGCAGAAAAGGTTGAAGAAA+AGG	-	chr2_3:17340075-17340094	Msa0281740:intron	35.0%
	TCAACAAACTTTCAAGCCTT+TGG	+	chr2_3:17340184-17340203	None:intergenic	35.0%
	TTGTCAAGGAATTGTGACTT+TGG	-	chr2_3:17340380-17340399	Msa0281740:five_prime_UTR	35.0%
	AAGGAATTGTGACTTTGGAT+TGG	-	chr2_3:17340385-17340404	Msa0281740:five_prime_UTR	35.0%
	AAGCAAAACAGGGACATATA+TGG	+	chr2_3:17340467-17340486	None:intergenic	35.0%
!!!	GCTTATTTTGGAGAGACAAG+TGG	-	chr2_3:17338901-17338920	Msa0281740:three_prime_UTR	40.0%
	CTTTGACTCATCAAAGGTCT+TGG	+	chr2_3:17339093-17339112	None:intergenic	40.0%
	CAAGACCTTTGATGAGTCAA+AGG	-	chr2_3:17339091-17339110	Msa0281740:three_prime_UTR	40.0%
!!	GGTTCGGTATTTTGTTTAGG+AGG	-	chr2_3:17339264-17339283	Msa0281740:CDS	40.0%
!!	TCAGATACTGCTTTTGATCC+AGG	+	chr2_3:17339842-17339861	None:intergenic	40.0%
!	TCTGAAGCATCATCCAAGTT+TGG	-	chr2_3:17339857-17339876	Msa0281740:intron	40.0%
	GAAAACTGGACCTGAAACTA+AGG	+	chr2_3:17339888-17339907	None:intergenic	40.0%
	TGAACAAGTAGAACCACCAA+AGG	-	chr2_3:17340165-17340184	Msa0281740:intron	40.0%
	ACAAACTTTCAAGCCTTTGG+TGG	+	chr2_3:17340181-17340200	None:intergenic	40.0%
!!!	GCTTATTTTGGAGAGACAAG+TGG	-	chr2_3:17338901-17338920	Msa0281740:three_prime_UTR	40.0%
	CTTTGACTCATCAAAGGTCT+TGG	+	chr2_3:17339093-17339112	None:intergenic	40.0%
	CAAGACCTTTGATGAGTCAA+AGG	-	chr2_3:17339091-17339110	Msa0281740:three_prime_UTR	40.0%
!!	GGTTCGGTATTTTGTTTAGG+AGG	-	chr2_3:17339264-17339283	Msa0281740:CDS	40.0%
!!	TCAGATACTGCTTTTGATCC+AGG	+	chr2_3:17339842-17339861	None:intergenic	40.0%
!	TCTGAAGCATCATCCAAGTT+TGG	-	chr2_3:17339857-17339876	Msa0281740:intron	40.0%
	GAAAACTGGACCTGAAACTA+AGG	+	chr2_3:17339888-17339907	None:intergenic	40.0%
	TGAACAAGTAGAACCACCAA+AGG	-	chr2_3:17340165-17340184	Msa0281740:intron	40.0%
	ACAAACTTTCAAGCCTTTGG+TGG	+	chr2_3:17340181-17340200	None:intergenic	40.0%
	ATTATGCATGGTGTGTGTGC+TGG	-	chr2_3:17338820-17338839	Msa0281740:three_prime_UTR	45.0%
!!	GGAAGCAAAAGATGGGTTAC+TGG	-	chr2_3:17338991-17339010	Msa0281740:three_prime_UTR	45.0%
!!	GATGGGTTACTGGACAACAA+AGG	-	chr2_3:17339001-17339020	Msa0281740:three_prime_UTR	45.0%
	GGTTCTTCCCAAGATCAAGA+AGG	-	chr2_3:17339022-17339041	Msa0281740:three_prime_UTR	45.0%
	TAAGAAAACAGCTGCTGCTG+AGG	-	chr2_3:17339064-17339083	Msa0281740:three_prime_UTR	45.0%
	GTCAAAGAACGTGATGTAGC+AGG	-	chr2_3:17339670-17339689	Msa0281740:intron	45.0%
!	AACTAAGGCTGGTCCAAACT+TGG	+	chr2_3:17339873-17339892	None:intergenic	45.0%
	TTTGGACCAGCCTTAGTTTC+AGG	-	chr2_3:17339875-17339894	Msa0281740:intron	45.0%
!!	TTTTTCCTCCTGTTTCTCCG+CGG	+	chr2_3:17340125-17340144	None:intergenic	45.0%
	GGAGAAACAGGAGGAAAAAC+CGG	-	chr2_3:17340126-17340145	Msa0281740:intron	45.0%
	TCTACTTGTTCAACTGCAGC+CGG	+	chr2_3:17340157-17340176	None:intergenic	45.0%
	ATTATGCATGGTGTGTGTGC+TGG	-	chr2_3:17338820-17338839	Msa0281740:three_prime_UTR	45.0%
!!	GGAAGCAAAAGATGGGTTAC+TGG	-	chr2_3:17338991-17339010	Msa0281740:three_prime_UTR	45.0%
!!	GATGGGTTACTGGACAACAA+AGG	-	chr2_3:17339001-17339020	Msa0281740:three_prime_UTR	45.0%
	GGTTCTTCCCAAGATCAAGA+AGG	-	chr2_3:17339022-17339041	Msa0281740:three_prime_UTR	45.0%
	TAAGAAAACAGCTGCTGCTG+AGG	-	chr2_3:17339064-17339083	Msa0281740:three_prime_UTR	45.0%
	GTCAAAGAACGTGATGTAGC+AGG	-	chr2_3:17339670-17339689	Msa0281740:intron	45.0%
!	AACTAAGGCTGGTCCAAACT+TGG	+	chr2_3:17339873-17339892	None:intergenic	45.0%
	TTTGGACCAGCCTTAGTTTC+AGG	-	chr2_3:17339875-17339894	Msa0281740:intron	45.0%
!!	TTTTTCCTCCTGTTTCTCCG+CGG	+	chr2_3:17340125-17340144	None:intergenic	45.0%
	GGAGAAACAGGAGGAAAAAC+CGG	-	chr2_3:17340126-17340145	Msa0281740:intron	45.0%
	TCTACTTGTTCAACTGCAGC+CGG	+	chr2_3:17340157-17340176	None:intergenic	45.0%
	ACTGGACCTGAAACTAAGGC+TGG	+	chr2_3:17339884-17339903	None:intergenic	50.0%
	AGAAAAGGATGCAGCTGAGC+CGG	-	chr2_3:17340090-17340109	Msa0281740:intron	50.0%
!!	TTTTCCTCCTGTTTCTCCGC+GGG	+	chr2_3:17340124-17340143	None:intergenic	50.0%
	ACTGGACCTGAAACTAAGGC+TGG	+	chr2_3:17339884-17339903	None:intergenic	50.0%
	AGAAAAGGATGCAGCTGAGC+CGG	-	chr2_3:17340090-17340109	Msa0281740:intron	50.0%
!!	TTTTCCTCCTGTTTCTCCGC+GGG	+	chr2_3:17340124-17340143	None:intergenic	50.0%
	GCATGGTGTGTGTGCTGGAA+TGG	-	chr2_3:17338825-17338844	Msa0281740:three_prime_UTR	55.0%
	GGAGGAAAAACCGGTTGAGC+CGG	-	chr2_3:17340135-17340154	Msa0281740:intron	55.0%
	GCATGGTGTGTGTGCTGGAA+TGG	-	chr2_3:17338825-17338844	Msa0281740:three_prime_UTR	55.0%
	GGAGGAAAAACCGGTTGAGC+CGG	-	chr2_3:17340135-17340154	Msa0281740:intron	55.0%
!	TCAACTGCAGCCGGCTCAAC+CGG	+	chr2_3:17340148-17340167	None:intergenic	60.0%
!	TCAACTGCAGCCGGCTCAAC+CGG	+	chr2_3:17340148-17340167	None:intergenic	60.0%
	TCCTCCTCCCGCGGAGAAAC+AGG	-	chr2_3:17340114-17340133	Msa0281740:intron	65.0%
!	TCCTGTTTCTCCGCGGGAGG+AGG	+	chr2_3:17340118-17340137	None:intergenic	65.0%
	TCCTCCCGCGGAGAAACAGG+AGG	-	chr2_3:17340117-17340136	Msa0281740:intron	65.0%
!	TCCTCCTGTTTCTCCGCGGG+AGG	+	chr2_3:17340121-17340140	None:intergenic	65.0%
	TCCTCCTCCCGCGGAGAAAC+AGG	-	chr2_3:17340114-17340133	Msa0281740:intron	65.0%
!	TCCTGTTTCTCCGCGGGAGG+AGG	+	chr2_3:17340118-17340137	None:intergenic	65.0%
	TCCTCCCGCGGAGAAACAGG+AGG	-	chr2_3:17340117-17340136	Msa0281740:intron	65.0%
!	TCCTCCTGTTTCTCCGCGGG+AGG	+	chr2_3:17340121-17340140	None:intergenic	65.0%
	TTCTCCGCGGGAGGAGGAGC+CGG	+	chr2_3:17340112-17340131	None:intergenic	70.0%
	TTCTCCGCGGGAGGAGGAGC+CGG	+	chr2_3:17340112-17340131	None:intergenic	70.0%
!	TGAGCCGGCTCCTCCTCCCG+CGG	-	chr2_3:17340105-17340124	Msa0281740:intron	75.0%
!	TGAGCCGGCTCCTCCTCCCG+CGG	-	chr2_3:17340105-17340124	Msa0281740:intron	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	17338816	17340488	17338816	ID=Msa0281740;Name=Msa0281740
chr2_3	mRNA	17338816	17340488	17338816	ID=Msa0281740-mRNA-1;Parent=Msa0281740;Name=Msa0281740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=186\|1\|1\|1\|1\|1\|4\|296\|214
chr2_3	exon	17338816	17339470	17338816	ID=Msa0281740-mRNA-1:exon:7136;Parent=Msa0281740-mRNA-1
chr2_3	exon	17339556	17339640	17339556	ID=Msa0281740-mRNA-1:exon:7135;Parent=Msa0281740-mRNA-1
chr2_3	exon	17339932	17340021	17339932	ID=Msa0281740-mRNA-1:exon:7134;Parent=Msa0281740-mRNA-1
chr2_3	exon	17340192	17340488	17340192	ID=Msa0281740-mRNA-1:exon:7133;Parent=Msa0281740-mRNA-1
chr2_3	five_prime_UTR	17340303	17340488	17340303	ID=Msa0281740-mRNA-1:five_prime_utr;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17340192	17340302	17340192	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17339932	17340021	17339932	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17339556	17339640	17339556	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17339112	17339470	17339112	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	three_prime_UTR	17338816	17339111	17338816	ID=Msa0281740-mRNA-1:three_prime_utr;Parent=Msa0281740-mRNA-1

Gene Sequence

>Msa0281740

ATGGGTTACTGGACAACAAAGGTTCTTCCCAAGATCAAGAAGGTTTTTGAGAAGAATAGTACTAAGAAAACAGCTGCTGCTGAGGTTTCCAAGACCTTTGATGAGTCAAAGGAGGGAATCAATAAAGAGTTTGAGGAAAAGAAAACTGAACTTCAAACAAAAGTACTTGCTGTATATGAAGCATCTTCAACTGAAATCAAGAGTTTGGTCAAAGAACGTGATGTAGCAGGTCTAAAGAAGAACTCAACAGAAGCTCACAAATTCATAGAAGAACTTGTTAAAATTGATTTTCCTGGATCAAAAGCAGTATCTGAAGCATCATCCAAGTTTGGACCAGCCTTAGTTTCAGGTCCAGTTTTCTTTGTTTTTGAGAAGGTATCAACTTTCATAGTCACAGAAGAAAAAGTTGAAGAAGCACCTGCTACTACAGAAACAAAAACAGAAGATGAAACAAGTGGTGTTAAAGAGAGGGAAATAGTTGTTGAAGAAGAGAAAAAGGAAGAAACAAGTGAGAAAATTGAATCTTCTGCAGAAAAGGTTGAAGAAAAGGATGCAGCTGAGCCGGCTCCTCCTCCCGCGGAGAAACAGGAGGAAAAACCGGTTGAGCCGGCTGCAGTTGAACAAGTAGAACCACCAAAGGCTTGA

Protein sequence

>Msa0281740

MGYWTTKVLPKIKKVFEKNSTKKTAAAEVSKTFDESKEGINKEFEEKKTELQTKVLAVYEASSTEIKSLVKERDVAGLKKNSTEAHKFIEELVKIDFPGSKAVSEASSKFGPALVSGPVFFVFEKVSTFIVTEEKVEEAPATTETKTEDETSGVKEREIVVEEEKKEETSEKIESSAEKVEEKDAAEPAPPPAEKQEEKPVEPAAVEQVEPPKA*