AlfalfaGEDB | Msa0281740

M. sativa cultivar zhongmu-4 / Msa0281740

KEGG: -
GO: GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
PFAM: PF05558.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	XP_013463310.1	98.131	214	4	0	1	214	1	214	8.03e-137	392

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	sp\|Q96262\|PCAP1_ARATH	61.326	181	58	2	1	171	1	179	3.66e-54	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	B7FH09	98.131	214	4	0	1	214	1	214	3.83e-137	392

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032470	Msa0281740	0.805997	1.018709e-49	-8.615850e-47
Msa0055070	Msa0281740	0.800343	1.506631e-48	-8.615850e-47
Msa0174260	Msa0281740	0.804316	2.290616e-49	-8.615850e-47
Msa0189030	Msa0281740	0.804539	2.058333e-49	-8.615850e-47
Msa0191890	Msa0281740	0.805364	1.383735e-49	-8.615850e-47
Msa0200650	Msa0281740	0.923703	1.870681e-89	-8.615850e-47
Msa0202930	Msa0281740	0.809015	2.331838e-50	-8.615850e-47
Msa0235940	Msa0281740	0.800696	1.276835e-48	-8.615850e-47
Msa0240270	Msa0281740	0.809994	1.437243e-50	-8.615850e-47
Msa0281740	Msa0309270	0.811836	5.735656e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	MtrunA17_Chr2g0296431	98.131	214	4	0	1	214	1	214	7.38e-141	392

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281740	AT4G20260.8	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.1	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.3	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.2	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.9	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.7	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.10	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0281740	AT4G20260.6	68.243	148	43	2	1	145	1	147	4.95e-54	171
Msa0281740	AT4G20260.5	67.857	140	45	0	1	140	1	140	1.39e-53	169
Msa0281740	AT4G20260.4	60.989	182	58	3	1	171	1	180	1.93e-53	171

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Find 50 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAAGATGAAACAAG+TGG	0.618986	2_3:-17339299	Msa0281740:CDS
AAACAAGTGGTGTTAAAGAG+AGG	0.557539	2_3:-17339286	Msa0281740:CDS
AAACATTTGGAAGCAAAAGA+TGG	0.424068	2_3:-17340299	Msa0281740:exon
AAAGGAAAATAAAGCAAAAC+AGG	0.336266	2_3:+17338807	None:intergenic
AACAAGTGGTGTTAAAGAGA+GGG	0.574339	2_3:-17339285	Msa0281740:CDS
AACATTTGGAAGCAAAAGAT+GGG	0.550046	2_3:-17340298	Msa0281740:exon
AACTAAGGCTGGTCCAAACT+TGG	0.441827	2_3:+17339412	None:intergenic
AAGCAAAACAGGGACATATA+TGG	0.360009	2_3:+17338818	None:intergenic
AAGGAAAATAAAGCAAAACA+GGG	0.712132	2_3:+17338808	None:intergenic
AAGGAATTGTGACTTTGGAT+TGG	0.488861	2_3:-17338897	Msa0281740:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTATAAGAACTCAAGGTTA+AGG	-	chr2_3:17338948-17338967	Msa0281740:three_prime_UTR	30.0%
AAACATTTGGAAGCAAAAGA+TGG	-	chr2_3:17338983-17339002	Msa0281740:three_prime_UTR	30.0%
AACATTTGGAAGCAAAAGAT+GGG	-	chr2_3:17338984-17339003	Msa0281740:three_prime_UTR	30.0%
TCAAAAACCTTCTTGATCTT+GGG	+	chr2_3:17339032-17339051	None:intergenic	30.0%
TTAGACTAGATACATGTATC+TGG	-	chr2_3:17339514-17339533	Msa0281740:intron	30.0%
GAAAAAGACACCAATATTGA+TGG	-	chr2_3:17339616-17339635	Msa0281740:CDS	30.0%
AATATCACCTTTACAGAGTT+TGG	-	chr2_3:17339648-17339667	Msa0281740:intron	30.0%
AAAACAGAAGATGAAACAAG+TGG	-	chr2_3:17339983-17340002	Msa0281740:CDS	30.0%
AGTTGTTGAAGAAGAGAAAA+AGG	-	chr2_3:17340024-17340043	Msa0281740:intron	30.0%
AATTGAATCTTCTGCAGAAA+AGG	-	chr2_3:17340063-17340082	Msa0281740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	17338816	17340488	17338816	ID=Msa0281740;Name=Msa0281740
chr2_3	mRNA	17338816	17340488	17338816	ID=Msa0281740-mRNA-1;Parent=Msa0281740;Name=Msa0281740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=186\|1\|1\|1\|1\|1\|4\|296\|214
chr2_3	exon	17338816	17339470	17338816	ID=Msa0281740-mRNA-1:exon:7136;Parent=Msa0281740-mRNA-1
chr2_3	exon	17339556	17339640	17339556	ID=Msa0281740-mRNA-1:exon:7135;Parent=Msa0281740-mRNA-1
chr2_3	exon	17339932	17340021	17339932	ID=Msa0281740-mRNA-1:exon:7134;Parent=Msa0281740-mRNA-1
chr2_3	exon	17340192	17340488	17340192	ID=Msa0281740-mRNA-1:exon:7133;Parent=Msa0281740-mRNA-1
chr2_3	five_prime_UTR	17340303	17340488	17340303	ID=Msa0281740-mRNA-1:five_prime_utr;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17340192	17340302	17340192	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17339932	17340021	17339932	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17339556	17339640	17339556	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	CDS	17339112	17339470	17339112	ID=Msa0281740-mRNA-1:cds;Parent=Msa0281740-mRNA-1
chr2_3	three_prime_UTR	17338816	17339111	17338816	ID=Msa0281740-mRNA-1:three_prime_utr;Parent=Msa0281740-mRNA-1

Gene Sequence

>Msa0281740

ATGGGTTACTGGACAACAAAGGTTCTTCCCAAGATCAAGAAGGTTTTTGAGAAGAATAGTACTAAGAAAACAGCTGCTGCTGAGGTTTCCAAGACCTTTGATGAGTCAAAGGAGGGAATCAATAAAGAGTTTGAGGAAAAGAAAACTGAACTTCAAACAAAAGTACTTGCTGTATATGAAGCATCTTCAACTGAAATCAAGAGTTTGGTCAAAGAACGTGATGTAGCAGGTCTAAAGAAGAACTCAACAGAAGCTCACAAATTCATAGAAGAACTTGTTAAAATTGATTTTCCTGGATCAAAAGCAGTATCTGAAGCATCATCCAAGTTTGGACCAGCCTTAGTTTCAGGTCCAGTTTTCTTTGTTTTTGAGAAGGTATCAACTTTCATAGTCACAGAAGAAAAAGTTGAAGAAGCACCTGCTACTACAGAAACAAAAACAGAAGATGAAACAAGTGGTGTTAAAGAGAGGGAAATAGTTGTTGAAGAAGAGAAAAAGGAAGAAACAAGTGAGAAAATTGAATCTTCTGCAGAAAAGGTTGAAGAAAAGGATGCAGCTGAGCCGGCTCCTCCTCCCGCGGAGAAACAGGAGGAAAAACCGGTTGAGCCGGCTGCAGTTGAACAAGTAGAACCACCAAAGGCTTGA

Protein sequence

>Msa0281740

MGYWTTKVLPKIKKVFEKNSTKKTAAAEVSKTFDESKEGINKEFEEKKTELQTKVLAVYEASSTEIKSLVKERDVAGLKKNSTEAHKFIEELVKIDFPGSKAVSEASSKFGPALVSGPVFFVFEKVSTFIVTEEKVEEAPATTETKTEDETSGVKEREIVVEEEKKEETSEKIESSAEKVEEKDAAEPAPPPAEKQEEKPVEPAAVEQVEPPKA*