AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842770 MtrunA17_Chr5g0413351 97.256 328 9 0 1 328 1 328 0.0 657
Msa0842770 MtrunA17_Chr8g0368491 62.651 332 118 2 1 328 16 345 9.20e-151 427
Msa0842770 MtrunA17_Chr8g0368481 60.909 330 121 3 4 328 34 360 6.49e-145 413
Msa0842770 MtrunA17_Chr4g0058951 50.298 336 158 4 1 328 16 350 1.69e-116 340
Msa0842770 MtrunA17_Chr3g0117481 51.906 341 147 4 1 328 16 352 2.83e-113 332
Msa0842770 MtrunA17_Chr7g0228251 50.311 322 148 5 4 325 8 317 1.43e-108 319
Msa0842770 MtrunA17_Chr1g0194161 40.498 321 175 5 12 320 5 321 5.14e-74 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842770 AT1G70505.3 59.077 325 127 4 1 321 1 323 6.56e-134 384
Msa0842770 AT1G70505.4 59.077 325 127 4 1 321 27 349 8.33e-134 385
Msa0842770 AT1G10660.2 56.308 325 126 5 1 318 1 316 2.49e-120 349
Msa0842770 AT1G10660.1 56.308 325 126 5 1 318 1 316 2.49e-120 349
Msa0842770 AT1G10660.3 56.308 325 126 5 1 318 1 316 2.49e-120 349
Msa0842770 AT1G10660.4 56.308 325 126 5 1 318 1 316 2.49e-120 349
Msa0842770 AT5G62960.1 47.432 331 161 3 2 328 26 347 2.22e-108 320
Msa0842770 AT5G62960.2 46.075 293 145 3 2 290 26 309 5.78e-92 276
Msa0842770 AT1G70505.2 53.441 247 109 4 1 243 1 245 1.09e-83 254
Msa0842770 AT1G70505.1 53.414 249 110 4 1 245 27 273 2.24e-82 254
Msa0842770 AT3G27770.1 41.066 319 166 7 7 317 11 315 2.85e-81 249
Msa0842770 AT3G27770.2 43.678 261 130 6 65 317 21 272 1.46e-69 218
Msa0842770 AT2G47115.1 39.863 291 144 4 43 323 28 297 8.02e-59 191

Find 82 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTAATACCTTGAGTTAT+TGG 0.142821 5_4:-20145785 Msa0842770:CDS
TATTATTCAAATATTATTTC+AGG 0.227394 5_4:-20144588 Msa0842770:intron
TTAAAGGAATTCATCCTAAT+TGG 0.227419 5_4:-20145590 Msa0842770:CDS
TGCTCACTGACCTTGTATTC+TGG 0.268288 5_4:-20142962 Msa0842770:CDS
CCTTGAGTTATTGGTTGAAT+TGG 0.289568 5_4:-20145776 Msa0842770:CDS
TAATTTCAACATGAATTAAC+AGG 0.326573 5_4:-20145852 Msa0842770:five_prime_UTR
AATATCCAGACGGAAGTCTT+TGG 0.329675 5_4:+20142914 None:intergenic
GAGACAGAGAGAAGATGCTT+TGG 0.343236 5_4:+20146503 None:intergenic
GCATGGAATACATGTGTTAA+AGG 0.347362 5_4:-20145606 Msa0842770:CDS
ATAATGCACATTCCATGTTA+TGG 0.360858 5_4:-20141243 Msa0842770:CDS
TTCGAAACTCCAACAACTAT+TGG 0.360922 5_4:+20141096 None:intergenic
CTGTAAGCAAGCAACCAATT+AGG 0.371298 5_4:+20145576 None:intergenic
CATCACCATATGCACCCTTA+TGG 0.375914 5_4:-20141753 Msa0842770:intron
GTTAAAGCAACTTCTATAGA+AGG 0.385635 5_4:+20144763 None:intergenic
CAGGATTCTCAAGCCAAACT+TGG 0.399849 5_4:-20145833 Msa0842770:five_prime_UTR
TTAAATATGTAGACTTGTGC+AGG 0.402756 5_4:-20142993 Msa0842770:intron
TAGAACTTAGAAGCCAAGTT+TGG 0.406459 5_4:+20145820 None:intergenic
TATGTGGCTCCAACACTTGA+TGG 0.408371 5_4:-20144695 Msa0842770:CDS
CTGGTTCTTGTCAGTTTCTA+CGG 0.409172 5_4:-20141167 Msa0842770:CDS
TTTGGTCACTATTTACTTTG+CGG 0.416580 5_4:-20145026 Msa0842770:intron
TCCATGCCGTTGTTTCGCTT+TGG 0.416933 5_4:-20141880 Msa0842770:intron
TAAGAGTTCGTATGCCAATC+AGG 0.423869 5_4:-20144648 Msa0842770:CDS
AGACAGAGAGAAGATGCTTT+GGG 0.434369 5_4:+20146504 None:intergenic
AGCATTAGTCATTCTGTGTA+AGG 0.441761 5_4:-20141128 Msa0842770:three_prime_UTR
AGTGAAATTAAGATTTAAGA+AGG 0.443913 5_4:+20146464 None:intergenic
GAACAGATGGACATTTACTT+TGG 0.448713 5_4:-20145044 Msa0842770:intron
CTTTAACCACAAGGAATTTG+AGG 0.453242 5_4:-20144747 Msa0842770:CDS
AGAGAATGAGTATATCAGTA+TGG 0.453565 5_4:+20140897 None:intergenic
ACTGCTAATATAGTTGTTGA+TGG 0.456333 5_4:-20145519 Msa0842770:CDS
ACATACCATAAGGGTGCATA+TGG 0.457897 5_4:+20141748 None:intergenic
GACAAATCAAGGAAAGGATA+AGG 0.477562 5_4:+20141775 None:intergenic
GTTAACGCTGTGCTCCTCCT+TGG 0.480961 5_4:-20142080 Msa0842770:CDS
TGGTTGTCGAGATTGTTCTC+TGG 0.487176 5_4:-20141186 Msa0842770:CDS
TTTAACCACAAGGAATTTGA+GGG 0.490528 5_4:-20144746 Msa0842770:CDS
TCGATTGAGAGATTCCTGAT+TGG 0.495840 5_4:+20144634 None:intergenic
TCGAAATACAGCTGGTGTGT+GGG 0.497509 5_4:-20144615 Msa0842770:CDS
GGAAGAAGGGCGACGAGAAA+CGG 0.502040 5_4:-20145652 Msa0842770:CDS
AAGTCTTTGGATGTCATAAA+CGG 0.506515 5_4:+20142927 None:intergenic
ATGTGGCTCCAACACTTGAT+GGG 0.508289 5_4:-20144694 Msa0842770:CDS
CATATGGTGATGACAAATCA+AGG 0.512911 5_4:+20141764 None:intergenic
GACATCCAAAGACTTCCGTC+TGG 0.516324 5_4:-20142919 Msa0842770:CDS
TTCAATTTGCAGTTCACCGT+TGG 0.521403 5_4:-20142113 Msa0842770:intron
GAAATGAGAGGGTGGAAGAA+GGG 0.524860 5_4:-20145665 Msa0842770:CDS
TTGTTGGAGTTTCGAAACCT+TGG 0.526050 5_4:-20141089 Msa0842770:three_prime_UTR
GTATGGAAAATTTATTACAA+AGG 0.529182 5_4:+20141014 None:intergenic
AAATAACAAGCCAGAATACA+AGG 0.530867 5_4:+20142952 None:intergenic
AGAAATGAGAGGGTGGAAGA+AGG 0.535700 5_4:-20145666 Msa0842770:CDS
AAATATGCAAATCGAAACAC+TGG 0.545569 5_4:+20141944 None:intergenic
ATCGAAATACAGCTGGTGTG+TGG 0.547035 5_4:-20144616 Msa0842770:CDS
AGCTTGTTAATGTTAAGTGA+AGG 0.558355 5_4:-20140962 Msa0842770:three_prime_UTR
GCATTAGTCATTCTGTGTAA+GGG 0.560859 5_4:-20141127 Msa0842770:three_prime_UTR
TCTCTCAATCGAAATACAGC+TGG 0.561952 5_4:-20144623 Msa0842770:CDS
GAAGGGCGACGAGAAACGGT+TGG 0.569856 5_4:-20145648 Msa0842770:CDS
CATTAGTCATTCTGTGTAAG+GGG 0.570552 5_4:-20141126 Msa0842770:three_prime_UTR
AATATAGTTGTTGATGGAGG+TGG 0.572071 5_4:-20145513 Msa0842770:CDS
TGCTATATGAAGATGAAGCA+TGG 0.572936 5_4:-20145623 Msa0842770:CDS
ATGAGTATATCAGTATGGAC+AGG 0.574521 5_4:+20140902 None:intergenic
CGTTTCCCTCAAATTCCTTG+TGG 0.579761 5_4:+20144741 None:intergenic
AATTTAAGAACATACCATAA+GGG 0.580153 5_4:+20141739 None:intergenic
TCAGAAATCCCATCAAGTGT+TGG 0.581297 5_4:+20144686 None:intergenic
CCAATTCAACCAATAACTCA+AGG 0.587774 5_4:+20145776 None:intergenic
TACGAACTCTTAGATAAGAC+AGG 0.588267 5_4:+20144659 None:intergenic
GGTATTAGTATCTTGTGTCA+TGG 0.591072 5_4:+20145797 None:intergenic
CGAAATACAGCTGGTGTGTG+GGG 0.596310 5_4:-20144614 Msa0842770:CDS
GGTGATGACAAATCAAGGAA+AGG 0.602090 5_4:+20141769 None:intergenic
TAGTGAAGTTGAAGCACTTG+TGG 0.603098 5_4:-20141206 Msa0842770:CDS
TACAGAACGAGGCACTTATG+TGG 0.604278 5_4:-20144711 Msa0842770:CDS
TCAGTAAATCAAGAAATGAG+AGG 0.605968 5_4:-20145677 Msa0842770:CDS
CAGTAAATCAAGAAATGAGA+GGG 0.619640 5_4:-20145676 Msa0842770:CDS
AATGCAAAGAAGCCATAACA+TGG 0.621242 5_4:+20141231 None:intergenic
TAGAAGTTGCTTTAACCACA+AGG 0.639755 5_4:-20144756 Msa0842770:CDS
TAAATCAAGAAATGAGAGGG+TGG 0.641595 5_4:-20145673 Msa0842770:CDS
ACCAAAGCGAAACAACGGCA+TGG 0.646417 5_4:+20141879 None:intergenic
AGTATATCAGTATGGACAGG+AGG 0.646590 5_4:+20140905 None:intergenic
ACACAGAATGACTAATGCTG+TGG 0.647354 5_4:+20141132 None:intergenic
CGAAACATCATTGAACTGCA+TGG 0.659943 5_4:-20142057 Msa0842770:intron
AGTTCAATGATGTTTCGCCA+AGG 0.672652 5_4:+20142063 None:intergenic
TCAATGATGTTTCGCCAAGG+AGG 0.685866 5_4:+20142066 None:intergenic
GCTAATATAGTTGTTGATGG+AGG 0.698631 5_4:-20145516 Msa0842770:CDS
GTTAACAGAGTGCATACCAA+CGG 0.699109 5_4:+20142097 None:intergenic
TTGTACTTACAATATCCAGA+CGG 0.715608 5_4:+20142904 None:intergenic
AACGCATTAGATACAGAACG+AGG 0.781639 5_4:-20144722 Msa0842770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTCTTTTATTAACTA+TGG - chr5_4:20141704-20141723 Msa0842770:intron 10.0%
!!! ATATTTCTTTTATTAACTAT+GGG - chr5_4:20141705-20141724 Msa0842770:intron 10.0%
!! TATTATTCAAATATTATTTC+AGG - chr5_4:20142852-20142871 Msa0842770:intron 10.0%
!!! TCTAATTTTATAAAAAAATG+TGG + chr5_4:20143793-20143812 None:intergenic 10.0%
!!! AAATTTAAAGTATATAATTG+AGG + chr5_4:20145443-20145462 None:intergenic 10.0%
!!! ATATATTTTTTTTTAGACAT+TGG - chr5_4:20146374-20146393 Msa0842770:intron 10.0%
!! TAAAGAGAATTTAATTCAAA+GGG + chr5_4:20141255-20141274 None:intergenic 15.0%
!! ATAAAGAGAATTTAATTCAA+AGG + chr5_4:20141256-20141275 None:intergenic 15.0%
!! TGAATTAAATTCTCTTTATT+TGG - chr5_4:20141257-20141276 Msa0842770:CDS 15.0%
!! ATTAATAAGTTTCTAATACT+TGG + chr5_4:20141572-20141591 None:intergenic 15.0%
!!! ATTACTCTTATTGATTTTAT+TGG - chr5_4:20142878-20142897 Msa0842770:intron 15.0%
!!! TTTCTTCATTTCTTTAATTT+GGG + chr5_4:20143112-20143131 None:intergenic 15.0%
!! ATTTCTTCATTTCTTTAATT+TGG + chr5_4:20143113-20143132 None:intergenic 15.0%
!!! AATTGTTTTATTGATTGAAA+AGG - chr5_4:20143130-20143149 Msa0842770:intron 15.0%
!!! AATTTTCAATTAGAACTTAA+AGG + chr5_4:20143238-20143257 None:intergenic 15.0%
!! TATATAATATAACACCTTAA+AGG - chr5_4:20143523-20143542 Msa0842770:intron 15.0%
!!! AAGCATATTATTTTTAAATC+TGG - chr5_4:20144210-20144229 Msa0842770:intron 15.0%
!!! AGCATATTATTTTTAAATCT+GGG - chr5_4:20144211-20144230 Msa0842770:intron 15.0%
!! AAATATATGTCAAATATTAG+AGG + chr5_4:20145775-20145794 None:intergenic 15.0%
!!! TCATTTTAAAAAAATCTAAC+TGG + chr5_4:20146006-20146025 None:intergenic 15.0%
!! TCTAAAAAAAAATATATCCA+AGG + chr5_4:20146371-20146390 None:intergenic 15.0%
!!! TTTTCTATAAAAAATGAGTA+TGG + chr5_4:20146446-20146465 None:intergenic 15.0%
!! AGTGAAATTAAGATTTAAGA+AGG + chr5_4:20140979-20140998 None:intergenic 20.0%
!!! ACAGAATTTTGCAAAAATTA+AGG + chr5_4:20141155-20141174 None:intergenic 20.0%
!!! TGCTTAATCAATTGATAATT+TGG - chr5_4:20141225-20141244 Msa0842770:CDS 20.0%
!!! GCTTAATCAATTGATAATTT+GGG - chr5_4:20141226-20141245 Msa0842770:CDS 20.0%
!!! CTTAATCAATTGATAATTTG+GGG - chr5_4:20141227-20141246 Msa0842770:CDS 20.0%
!! TAGAAATAGCTTATACATAA+GGG + chr5_4:20141358-20141377 None:intergenic 20.0%
!! ATAGAAATAGCTTATACATA+AGG + chr5_4:20141359-20141378 None:intergenic 20.0%
!!! ATTGATTTCATATAAGCTAT+AGG - chr5_4:20141402-20141421 Msa0842770:intron 20.0%
!! TTGATAAATATAGGCATATT+TGG + chr5_4:20141548-20141567 None:intergenic 20.0%
!!! ATACTTGGTTTGATAAATAT+AGG + chr5_4:20141557-20141576 None:intergenic 20.0%
!! TAATTTCAACATGAATTAAC+AGG - chr5_4:20141588-20141607 Msa0842770:intron 20.0%
!!! AATTTCTTTTTTTGTGCTTT+TGG - chr5_4:20141890-20141909 Msa0842770:CDS 20.0%
!!! ATTTCTTTTTTTGTGCTTTT+GGG - chr5_4:20141891-20141910 Msa0842770:CDS 20.0%
!! TGATATCAATTTCAAAATGA+CGG - chr5_4:20142106-20142125 Msa0842770:intron 20.0%
!! TAACCAATGAAATTGTTTAT+TGG + chr5_4:20142265-20142284 None:intergenic 20.0%
!! CAGCATATTTATAACAAAAA+GGG + chr5_4:20142352-20142371 None:intergenic 20.0%
!! TCAGCATATTTATAACAAAA+AGG + chr5_4:20142353-20142372 None:intergenic 20.0%
!!! TTCAAGTATAACTTTTGTTT+AGG - chr5_4:20142983-20143002 Msa0842770:CDS 20.0%
!!! ATTAGTTTTGTGAAAGAAAT+TGG - chr5_4:20143039-20143058 Msa0842770:intron 20.0%
!! AAATTGGATATAATTGAAGA+TGG - chr5_4:20143055-20143074 Msa0842770:intron 20.0%
!! TAGATTGGAGAAAAAAAAAT+GGG - chr5_4:20143403-20143422 Msa0842770:intron 20.0%
!! AATAGTATTTGATCAAATCA+TGG - chr5_4:20143831-20143850 Msa0842770:intron 20.0%
!!! AATTTTATTGTGTTATGAAC+TGG - chr5_4:20144383-20144402 Msa0842770:intron 20.0%
!! TATGTGCATACATTTAATTA+GGG + chr5_4:20144721-20144740 None:intergenic 20.0%
!!! TGATTTTGTGAAATTGATTA+TGG - chr5_4:20144806-20144825 Msa0842770:intron 20.0%
!!! AGAATTGATTTTAACATGTT+TGG + chr5_4:20144975-20144994 None:intergenic 20.0%
!! CATTAATTACAAATTTCATG+CGG + chr5_4:20145149-20145168 None:intergenic 20.0%
!!! TCATTAACTTTTCATCATTA+AGG + chr5_4:20145192-20145211 None:intergenic 20.0%
!! AATTTAAGAACATACCATAA+GGG + chr5_4:20145704-20145723 None:intergenic 20.0%
!!! TATATTATCTATTGCTGATT+CGG - chr5_4:20145936-20145955 Msa0842770:intron 20.0%
!! GTATGGAAAATTTATTACAA+AGG + chr5_4:20146429-20146448 None:intergenic 20.0%
! TTGATGAATATGAAAAACAG+AGG + chr5_4:20141025-20141044 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr5_4:20141299-20141318 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr5_4:20141300-20141319 None:intergenic 25.0%
! AAATATAGGCATATTTGGAT+TGG + chr5_4:20141543-20141562 None:intergenic 25.0%
! ATACTAATACCTTGAGTTAT+TGG - chr5_4:20141655-20141674 Msa0842770:intron 25.0%
! TTAAAGGAATTCATCCTAAT+TGG - chr5_4:20141850-20141869 Msa0842770:intron 25.0%
! AAGACAGCAATATATTATAC+AGG + chr5_4:20141994-20142013 None:intergenic 25.0%
!!! TTGCGTTTTTTTCATCTTTT+TGG - chr5_4:20142477-20142496 Msa0842770:intron 25.0%
!!! TGCGTTTTTTTCATCTTTTT+GGG - chr5_4:20142478-20142497 Msa0842770:intron 25.0%
! AAAGGAGATATGTTATAGAA+AGG - chr5_4:20143148-20143167 Msa0842770:intron 25.0%
! CAATTAGAACTTAAAGGTTT+GGG + chr5_4:20143232-20143251 None:intergenic 25.0%
! TCAATTAGAACTTAAAGGTT+TGG + chr5_4:20143233-20143252 None:intergenic 25.0%
! CTAACAAAAGATATGTAGAT+TGG - chr5_4:20143388-20143407 Msa0842770:intron 25.0%
! GTAGATTGGAGAAAAAAAAA+TGG - chr5_4:20143402-20143421 Msa0842770:intron 25.0%
!! TTTTACTCTGTTTGAAAGAA+TGG - chr5_4:20143495-20143514 Msa0842770:intron 25.0%
! TTTACTCTGTTTGAAAGAAT+GGG - chr5_4:20143496-20143515 Msa0842770:intron 25.0%
! AATTACTTGTATACTCTCAT+TGG - chr5_4:20143688-20143707 Msa0842770:intron 25.0%
! AAAAAGAAATTCAACAAAGC+TGG + chr5_4:20143721-20143740 None:intergenic 25.0%
! GGTCTTTATTACAAACAAAA+GGG + chr5_4:20143772-20143791 None:intergenic 25.0%
! TGGTCTTTATTACAAACAAA+AGG + chr5_4:20143773-20143792 None:intergenic 25.0%
!!! AATAACGGGTTGTTAAAATT+AGG + chr5_4:20143910-20143929 None:intergenic 25.0%
! TCTTTGCCAAGAAATTTAAT+TGG - chr5_4:20144108-20144127 Msa0842770:intron 25.0%
! TTCTGACCAATTAAATTTCT+TGG + chr5_4:20144117-20144136 None:intergenic 25.0%
!!! TACTGATTAGATAAAGCTTT+TGG - chr5_4:20144615-20144634 Msa0842770:CDS 25.0%
!! ACTGATTAGATAAAGCTTTT+GGG - chr5_4:20144616-20144635 Msa0842770:CDS 25.0%
! CATACATTTAATTAGGGATT+AGG + chr5_4:20144715-20144734 None:intergenic 25.0%
! CTATGTGCATACATTTAATT+AGG + chr5_4:20144722-20144741 None:intergenic 25.0%
!! AATGTATGCACATAGTTTTT+AGG - chr5_4:20144727-20144746 Msa0842770:CDS 25.0%
!! ATGTATGCACATAGTTTTTA+GGG - chr5_4:20144728-20144747 Msa0842770:CDS 25.0%
! TTAGTAGTTTCATTCTTGTT+TGG - chr5_4:20144765-20144784 Msa0842770:CDS 25.0%
! AAACATACATGAAAACTGTT+TGG - chr5_4:20145038-20145057 Msa0842770:CDS 25.0%
! CGCATGAAATTTGTAATTAA+TGG - chr5_4:20145147-20145166 Msa0842770:intron 25.0%
!!! TTCAGTTCTAAAAGAAATGT+CGG - chr5_4:20145260-20145279 Msa0842770:intron 25.0%
!! GATTTGCATATTTTATCTTG+TGG - chr5_4:20145506-20145525 Msa0842770:CDS 25.0%
!! ATTTTCTAACCTTTTGTTAC+AGG - chr5_4:20145639-20145658 Msa0842770:CDS 25.0%
! GAATTTAAGAACATACCATA+AGG + chr5_4:20145705-20145724 None:intergenic 25.0%
!!! ATTTGAGTATTGATGACTAA+TGG + chr5_4:20145727-20145746 None:intergenic 25.0%
!!! GTAATTTTTTTCCTTTTGCA+TGG + chr5_4:20145753-20145772 None:intergenic 25.0%
! TGGTAGTACATATTATGTTA+TGG - chr5_4:20145840-20145859 Msa0842770:five_prime_UTR 25.0%
! TACATATTATGTTATGGTCT+AGG - chr5_4:20145846-20145865 Msa0842770:five_prime_UTR 25.0%
!!! ATATTATCTATTGCTGATTC+GGG - chr5_4:20145937-20145956 Msa0842770:intron 25.0%
!!! TGTTCGAATTTTTTGGTATA+TGG + chr5_4:20146057-20146076 None:intergenic 25.0%
CCAAATTGCTTACTTAAGAT+GGG + chr5_4:20141077-20141096 None:intergenic 30.0%
CCATCTTAAGTAAGCAATTT+GGG - chr5_4:20141075-20141094 Msa0842770:three_prime_UTR 30.0%
!! ACAACTTAATTTGCAGCTTA+TGG - chr5_4:20141310-20141329 Msa0842770:intron 30.0%
! CTTTTATTAACTATGGGCTT+AGG - chr5_4:20141711-20141730 Msa0842770:intron 30.0%
!! GCTTAGGATCATTTTTGATA+TGG - chr5_4:20141727-20141746 Msa0842770:intron 30.0%
TCAGTAAATCAAGAAATGAG+AGG - chr5_4:20141763-20141782 Msa0842770:CDS 30.0%
CAGTAAATCAAGAAATGAGA+GGG - chr5_4:20141764-20141783 Msa0842770:CDS 30.0%
ACTGCTAATATAGTTGTTGA+TGG - chr5_4:20141921-20141940 Msa0842770:CDS 30.0%
AGTAAGTAACTAAACTTCCA+AGG - chr5_4:20142064-20142083 Msa0842770:CDS 30.0%
GCATACAAATTTATGAACCT+TGG + chr5_4:20142084-20142103 None:intergenic 30.0%
GTTATTATTTCATGGCATTG+TGG + chr5_4:20142168-20142187 None:intergenic 30.0%
! TGTCGTGTGTTATTATTTCA+TGG + chr5_4:20142176-20142195 None:intergenic 30.0%
CAATGAAATTGTTTATTGGC+TGG + chr5_4:20142261-20142280 None:intergenic 30.0%
CAGCCAATAAACAATTTCAT+TGG - chr5_4:20142259-20142278 Msa0842770:intron 30.0%
TTTGGTCACTATTTACTTTG+CGG - chr5_4:20142414-20142433 Msa0842770:intron 30.0%
!!! GCGTTTTTTTCATCTTTTTG+GGG - chr5_4:20142479-20142498 Msa0842770:intron 30.0%
!!! CGTTTTTTTCATCTTTTTGG+GGG - chr5_4:20142480-20142499 Msa0842770:intron 30.0%
!!! GTTTTTTTCATCTTTTTGGG+GGG - chr5_4:20142481-20142500 Msa0842770:intron 30.0%
TATGTTCATATACTCCATAG+AGG - chr5_4:20142549-20142568 Msa0842770:intron 30.0%
GCTGAAATTGAAATTAAGAG+TGG + chr5_4:20142642-20142661 None:intergenic 30.0%
GTTAAAGCAACTTCTATAGA+AGG + chr5_4:20142680-20142699 None:intergenic 30.0%
TTTAACCACAAGGAATTTGA+GGG - chr5_4:20142694-20142713 Msa0842770:intron 30.0%
! TATCAGCTTTTATCTCTTTC+AGG + chr5_4:20143085-20143104 None:intergenic 30.0%
TGAAAGAGATAAAAGCTGAT+AGG - chr5_4:20143084-20143103 Msa0842770:intron 30.0%
! CATATCTTTTGTTAGAAACC+TGG + chr5_4:20143383-20143402 None:intergenic 30.0%
AAAAGTTTGTCTGTTTGAGA+TGG - chr5_4:20143468-20143487 Msa0842770:intron 30.0%
AACACCTTAAAGGTTTCAAA+AGG - chr5_4:20143533-20143552 Msa0842770:intron 30.0%
TCAGTGACTCAAACTTATTA+AGG - chr5_4:20143660-20143679 Msa0842770:intron 30.0%
CAGTGACTCAAACTTATTAA+GGG - chr5_4:20143661-20143680 Msa0842770:intron 30.0%
! AAAGGGAAAGTACAACTAAA+AGG + chr5_4:20143755-20143774 None:intergenic 30.0%
ACAGTGCTATAACGTTATTA+CGG + chr5_4:20143977-20143996 None:intergenic 30.0%
AGATATCGGAAGAAAAAAAG+TGG + chr5_4:20144021-20144040 None:intergenic 30.0%
ATTCTGCTATATGCTTAGAT+TGG - chr5_4:20144069-20144088 Msa0842770:intron 30.0%
TGTTATGAACTGGTTAAACT+TGG - chr5_4:20144393-20144412 Msa0842770:intron 30.0%
GTTATGAACTGGTTAAACTT+GGG - chr5_4:20144394-20144413 Msa0842770:intron 30.0%
TTAAATATGTAGACTTGTGC+AGG - chr5_4:20144447-20144466 Msa0842770:intron 30.0%
AAATAACAAGCCAGAATACA+AGG + chr5_4:20144491-20144510 None:intergenic 30.0%
AAGTCTTTGGATGTCATAAA+CGG + chr5_4:20144516-20144535 None:intergenic 30.0%
TTGTACTTACAATATCCAGA+CGG + chr5_4:20144539-20144558 None:intergenic 30.0%
TGTGATTTCTTCATTTGGTT+GGG - chr5_4:20144577-20144596 Msa0842770:intron 30.0%
! CTGATTAGATAAAGCTTTTG+GGG - chr5_4:20144617-20144636 Msa0842770:CDS 30.0%
AGAATCAACAGAAAAAGAAG+AGG - chr5_4:20144680-20144699 Msa0842770:CDS 30.0%
!!! TTCATTCTTGTTTGGTTTTG+CGG - chr5_4:20144773-20144792 Msa0842770:CDS 30.0%
TGATTATGGCTAAAAGTGAT+TGG - chr5_4:20144820-20144839 Msa0842770:intron 30.0%
GCCTAAAATTCAAATTGTAG+AGG - chr5_4:20144902-20144921 Msa0842770:intron 30.0%
! GCCTCTACAATTTGAATTTT+AGG + chr5_4:20144906-20144925 None:intergenic 30.0%
AAGTTAATGAAGATGCAGAA+AGG - chr5_4:20145202-20145221 Msa0842770:intron 30.0%
TGAGGAGAAATATAAGCAAA+AGG + chr5_4:20145425-20145444 None:intergenic 30.0%
AAATATGCAAATCGAAACAC+TGG + chr5_4:20145499-20145518 None:intergenic 30.0%
! TGCATATTTTATCTTGTGGA+CGG - chr5_4:20145510-20145529 Msa0842770:CDS 30.0%
!! CTACATTTGTGATTTTTCAG+TGG - chr5_4:20145533-20145552 Msa0842770:CDS 30.0%
CTGAAAAGCAATAGAAAGAT+GGG + chr5_4:20145599-20145618 None:intergenic 30.0%
ACTGAAAAGCAATAGAAAGA+TGG + chr5_4:20145600-20145619 None:intergenic 30.0%
!! TCTTTCTATTGCTTTTCAGT+TGG - chr5_4:20145600-20145619 Msa0842770:CDS 30.0%
!!! CACATTGAAACTTTTTTGAC+TGG - chr5_4:20145820-20145839 Msa0842770:five_prime_UTR 30.0%
TATGTTTGGATCAGTGATAT+AGG - chr5_4:20145960-20145979 Msa0842770:intron 30.0%
ATGTTTGGATCAGTGATATA+GGG - chr5_4:20145961-20145980 Msa0842770:intron 30.0%
!!! GAATTTTTTGGTATATGGTG+GGG + chr5_4:20146052-20146071 None:intergenic 30.0%
!!! CGAATTTTTTGGTATATGGT+GGG + chr5_4:20146053-20146072 None:intergenic 30.0%
!!! TCGAATTTTTTGGTATATGG+TGG + chr5_4:20146054-20146073 None:intergenic 30.0%
TTGAACTGATACAAGTTTGT+TGG - chr5_4:20146139-20146158 Msa0842770:intron 30.0%
ATAATGCACATTCCATGTTA+TGG - chr5_4:20146197-20146216 Msa0842770:intron 30.0%
!! AGCTTGTTAATGTTAAGTGA+AGG - chr5_4:20146478-20146497 Msa0842770:five_prime_UTR 30.0%
AGAGAATGAGTATATCAGTA+TGG + chr5_4:20146546-20146565 None:intergenic 30.0%
CCCATCTTAAGTAAGCAATT+TGG - chr5_4:20141074-20141093 Msa0842770:three_prime_UTR 35.0%
CCCAAATTGCTTACTTAAGA+TGG + chr5_4:20141078-20141097 None:intergenic 35.0%
TAAGCACTTCACAAAACACA+TGG + chr5_4:20141211-20141230 None:intergenic 35.0%
TAGAACTTAGAAGCCAAGTT+TGG + chr5_4:20141623-20141642 None:intergenic 35.0%
GGTATTAGTATCTTGTGTCA+TGG + chr5_4:20141646-20141665 None:intergenic 35.0%
CCAATTCAACCAATAACTCA+AGG + chr5_4:20141667-20141686 None:intergenic 35.0%
! CCTTGAGTTATTGGTTGAAT+TGG - chr5_4:20141664-20141683 Msa0842770:intron 35.0%
TAAATCAAGAAATGAGAGGG+TGG - chr5_4:20141767-20141786 Msa0842770:CDS 35.0%
TGCTATATGAAGATGAAGCA+TGG - chr5_4:20141817-20141836 Msa0842770:intron 35.0%
GCATGGAATACATGTGTTAA+AGG - chr5_4:20141834-20141853 Msa0842770:intron 35.0%
! GCTAATATAGTTGTTGATGG+AGG - chr5_4:20141924-20141943 Msa0842770:CDS 35.0%
! AATATAGTTGTTGATGGAGG+TGG - chr5_4:20141927-20141946 Msa0842770:CDS 35.0%
GCTATAGTACTTTAGTGTAG+CGG + chr5_4:20142144-20142163 None:intergenic 35.0%
CATTCTCAATTACGTGTTTG+TGG + chr5_4:20142202-20142221 None:intergenic 35.0%
CAAACACGTAATTGAGAATG+TGG - chr5_4:20142202-20142221 Msa0842770:intron 35.0%
! TGTTTATTGGCTGGAAAACA+CGG + chr5_4:20142252-20142271 None:intergenic 35.0%
!!! GCTGATTCCCTTTCTTTTTT+TGG - chr5_4:20142368-20142387 Msa0842770:intron 35.0%
TCAGGAGCCAAAAAAAGAAA+GGG + chr5_4:20142378-20142397 None:intergenic 35.0%
TTCAGGAGCCAAAAAAAGAA+AGG + chr5_4:20142379-20142398 None:intergenic 35.0%
AAGTAAATGTCCATCTGTTC+AGG + chr5_4:20142396-20142415 None:intergenic 35.0%
GAACAGATGGACATTTACTT+TGG - chr5_4:20142396-20142415 Msa0842770:intron 35.0%
AGAGAGTTAGAGAAGTGAAA+TGG + chr5_4:20142442-20142461 None:intergenic 35.0%
GAAAAACAAAGTCGATGAAC+AGG + chr5_4:20142586-20142605 None:intergenic 35.0%
! TAGAAGTTGCTTTAACCACA+AGG - chr5_4:20142684-20142703 Msa0842770:intron 35.0%
CTTTAACCACAAGGAATTTG+AGG - chr5_4:20142693-20142712 Msa0842770:intron 35.0%
TACGAACTCTTAGATAAGAC+AGG + chr5_4:20142784-20142803 None:intergenic 35.0%
TGTTGACAAAGACTCAAAGT+TGG + chr5_4:20142949-20142968 None:intergenic 35.0%
! GATAATTAGTCTCTTCTCTG+AGG + chr5_4:20143203-20143222 None:intergenic 35.0%
AAGTGTGCTAAATAAGGAGT+CGG + chr5_4:20143342-20143361 None:intergenic 35.0%
! TCCTTATTTAGCACACTTGT+TGG - chr5_4:20143344-20143363 Msa0842770:intron 35.0%
! CCTTATTTAGCACACTTGTT+GGG - chr5_4:20143345-20143364 Msa0842770:intron 35.0%
!!! GACACCTTTTGAAACCTTTA+AGG + chr5_4:20143540-20143559 None:intergenic 35.0%
GTGTCAGAATTTATCATCGA+TGG - chr5_4:20143555-20143574 Msa0842770:intron 35.0%
GGATCTAGTTGTTACAATAC+TGG - chr5_4:20143576-20143595 Msa0842770:intron 35.0%
GCATATTGCAGAACAATAAC+GGG + chr5_4:20143924-20143943 None:intergenic 35.0%
CGCATATTGCAGAACAATAA+CGG + chr5_4:20143925-20143944 None:intergenic 35.0%
GTGTTGTAAATCGCAGATAT+CGG + chr5_4:20144035-20144054 None:intergenic 35.0%
TATCTGCGATTTACAACACT+TGG - chr5_4:20144036-20144055 Msa0842770:intron 35.0%
TTACAACACTTGGCTGAAAA+AGG - chr5_4:20144046-20144065 Msa0842770:intron 35.0%
CTTCATTCAAATAGTTGACC+AGG + chr5_4:20144158-20144177 None:intergenic 35.0%
GTAACAGAGAGACTGAATAA+TGG + chr5_4:20144281-20144300 None:intergenic 35.0%
CAACCAAATGAAGAAATCAC+AGG + chr5_4:20144578-20144597 None:intergenic 35.0%
CTGTGATTTCTTCATTTGGT+TGG - chr5_4:20144576-20144595 Msa0842770:intron 35.0%
!! ACATAGTTTTTAGGGACTGT+TGG - chr5_4:20144736-20144755 Msa0842770:CDS 35.0%
GGATGTGAAGTAGTTATGTT+TGG - chr5_4:20144841-20144860 Msa0842770:intron 35.0%
!! TATGTTTGCTTCCACTTTTG+GGG + chr5_4:20145025-20145044 None:intergenic 35.0%
!! GTATGTTTGCTTCCACTTTT+GGG + chr5_4:20145026-20145045 None:intergenic 35.0%
! TGTATGTTTGCTTCCACTTT+TGG + chr5_4:20145027-20145046 None:intergenic 35.0%
CATACATGAAAACTGTTTGG+AGG - chr5_4:20145041-20145060 Msa0842770:CDS 35.0%
AAGCACAAATGCTTTCATGT+TGG + chr5_4:20145100-20145119 None:intergenic 35.0%
! GTTTTACCAAAGCGAAACAA+CGG + chr5_4:20145569-20145588 None:intergenic 35.0%
! TTCTAACCTTTTGTTACAGG+TGG - chr5_4:20145642-20145661 Msa0842770:CDS 35.0%
GACAAATCAAGGAAAGGATA+AGG + chr5_4:20145668-20145687 None:intergenic 35.0%
! CATATGGTGATGACAAATCA+AGG + chr5_4:20145679-20145698 None:intergenic 35.0%
ACTCAAATACACCATGCAAA+AGG - chr5_4:20145739-20145758 Msa0842770:CDS 35.0%
TGATATAGGGTGGAATGAAA+TGG - chr5_4:20145974-20145993 Msa0842770:intron 35.0%
!!! TAGGGTGTGTTCGAATTTTT+TGG + chr5_4:20146064-20146083 None:intergenic 35.0%
AAAAATTCGAACACACCCTA+AGG - chr5_4:20146064-20146083 Msa0842770:intron 35.0%
CATAACCAATTGTTGCCTTA+GGG + chr5_4:20146082-20146101 None:intergenic 35.0%
TCATAACCAATTGTTGCCTT+AGG + chr5_4:20146083-20146102 None:intergenic 35.0%
!! TTGTTGGACTTTTAGGTACT+TGG - chr5_4:20146166-20146185 Msa0842770:intron 35.0%
AATGCAAAGAAGCCATAACA+TGG + chr5_4:20146212-20146231 None:intergenic 35.0%
AGCATTAGTCATTCTGTGTA+AGG - chr5_4:20146312-20146331 Msa0842770:intron 35.0%
GCATTAGTCATTCTGTGTAA+GGG - chr5_4:20146313-20146332 Msa0842770:intron 35.0%
CATTAGTCATTCTGTGTAAG+GGG - chr5_4:20146314-20146333 Msa0842770:intron 35.0%
GGAAAAACACCAATAGTTGT+TGG - chr5_4:20146335-20146354 Msa0842770:intron 35.0%
TTCGAAACTCCAACAACTAT+TGG + chr5_4:20146347-20146366 None:intergenic 35.0%
GGAAAAAAATGTACGTAGCA+AGG - chr5_4:20146499-20146518 Msa0842770:five_prime_UTR 35.0%
ATGAGTATATCAGTATGGAC+AGG + chr5_4:20146541-20146560 None:intergenic 35.0%
AGACAGAGAGAAGATGCTTT+GGG + chr5_4:20140939-20140958 None:intergenic 40.0%
ACATAAGGGCTTATCATGAC+AGG + chr5_4:20141344-20141363 None:intergenic 40.0%
CTGTAAGCAAGCAACCAATT+AGG + chr5_4:20141867-20141886 None:intergenic 40.0%
!!! TTTTTTGGCTCCTGAACAGA+TGG - chr5_4:20142383-20142402 Msa0842770:intron 40.0%
!! TTTTCATCTTTTTGGGGGGT+AGG - chr5_4:20142485-20142504 Msa0842770:intron 40.0%
!! TTTCATCTTTTTGGGGGGTA+GGG - chr5_4:20142486-20142505 Msa0842770:intron 40.0%
AGGTTCATCAGTTTCCTCTA+TGG + chr5_4:20142566-20142585 None:intergenic 40.0%
AACGCATTAGATACAGAACG+AGG - chr5_4:20142718-20142737 Msa0842770:intron 40.0%
TCAGAAATCCCATCAAGTGT+TGG + chr5_4:20142757-20142776 None:intergenic 40.0%
TAAGAGTTCGTATGCCAATC+AGG - chr5_4:20142792-20142811 Msa0842770:intron 40.0%
TCGATTGAGAGATTCCTGAT+TGG + chr5_4:20142809-20142828 None:intergenic 40.0%
TCTCTCAATCGAAATACAGC+TGG - chr5_4:20142817-20142836 Msa0842770:intron 40.0%
AGTTGTGATCTAGGGATACA+AGG + chr5_4:20143180-20143199 None:intergenic 40.0%
ATGCCCTCTTCGTATATTGA+CGG - chr5_4:20143279-20143298 Msa0842770:intron 40.0%
GAACCGTCAATATACGAAGA+GGG + chr5_4:20143285-20143304 None:intergenic 40.0%
AGAACCGTCAATATACGAAG+AGG + chr5_4:20143286-20143305 None:intergenic 40.0%
!! CTAATCTGGCAAGTTTGTTG+AGG + chr5_4:20143310-20143329 None:intergenic 40.0%
! GTCGGTTACATTTGCTAATC+TGG + chr5_4:20143324-20143343 None:intergenic 40.0%
CCCAACAAGTGTGCTAAATA+AGG + chr5_4:20143348-20143367 None:intergenic 40.0%
! CTTGATGTTGCTGTTGCATT+AGG - chr5_4:20143604-20143623 Msa0842770:intron 40.0%
! TTGCTGTTGCATTAGGACAT+TGG - chr5_4:20143611-20143630 Msa0842770:intron 40.0%
TTAGGACATTGGTAGACATC+TGG - chr5_4:20143622-20143641 Msa0842770:intron 40.0%
! AATGACCAGTAGTTTGCAGA+AGG - chr5_4:20144255-20144274 Msa0842770:intron 40.0%
ATGAACTGGTTAAACTTGGG+AGG - chr5_4:20144397-20144416 Msa0842770:intron 40.0%
AATATCCAGACGGAAGTCTT+TGG + chr5_4:20144529-20144548 None:intergenic 40.0%
AGTACAACTGATCTTATCCC+TGG - chr5_4:20144552-20144571 Msa0842770:intron 40.0%
AATGAAGAAATCACAGGCCA+GGG + chr5_4:20144572-20144591 None:intergenic 40.0%
AAATGAAGAAATCACAGGCC+AGG + chr5_4:20144573-20144592 None:intergenic 40.0%
TGGCCTGTGATTTCTTCATT+TGG - chr5_4:20144572-20144591 Msa0842770:intron 40.0%
!! TAAAGCTTTTGGGGACTGTT+CGG - chr5_4:20144626-20144645 Msa0842770:CDS 40.0%
TTTATTACCTCCCCCAAAAG+TGG - chr5_4:20145011-20145030 Msa0842770:intron 40.0%
!! ATGTTTGCTTCCACTTTTGG+GGG + chr5_4:20145024-20145043 None:intergenic 40.0%
GAAGATGCAGAAAGGTGAAT+AGG - chr5_4:20145210-20145229 Msa0842770:intron 40.0%
TTCAATTTGCAGTTCACCGT+TGG - chr5_4:20145327-20145346 Msa0842770:intron 40.0%
GTTAACAGAGTGCATACCAA+CGG + chr5_4:20145346-20145365 None:intergenic 40.0%
AGTTCAATGATGTTTCGCCA+AGG + chr5_4:20145380-20145399 None:intergenic 40.0%
CGAAACATCATTGAACTGCA+TGG - chr5_4:20145383-20145402 Msa0842770:intron 40.0%
ATAAGGCCACCTGTAACAAA+AGG + chr5_4:20145651-20145670 None:intergenic 40.0%
GGTGATGACAAATCAAGGAA+AGG + chr5_4:20145674-20145693 None:intergenic 40.0%
! ACATACCATAAGGGTGCATA+TGG + chr5_4:20145695-20145714 None:intergenic 40.0%
!! ATTGCTGATTCGGGTATGTT+TGG - chr5_4:20145946-20145965 Msa0842770:intron 40.0%
TTTGGATCAGTGATATAGGG+TGG - chr5_4:20145964-20145983 Msa0842770:intron 40.0%
! GTATATGGTGGGGAATGAAA+TGG + chr5_4:20146042-20146061 None:intergenic 40.0%
!! CAAGTTTGTTGGCATCTTGT+TGG - chr5_4:20146150-20146169 Msa0842770:intron 40.0%
! TGGCATCTTGTTGGACTTTT+AGG - chr5_4:20146159-20146178 Msa0842770:intron 40.0%
!! ACTTTTAGGTACTTGGCTGT+TGG - chr5_4:20146173-20146192 Msa0842770:intron 40.0%
! TAGTGAAGTTGAAGCACTTG+TGG - chr5_4:20146234-20146253 Msa0842770:intron 40.0%
! CTGGTTCTTGTCAGTTTCTA+CGG - chr5_4:20146273-20146292 Msa0842770:intron 40.0%
ACACAGAATGACTAATGCTG+TGG + chr5_4:20146311-20146330 None:intergenic 40.0%
TTGTTGGAGTTTCGAAACCT+TGG - chr5_4:20146351-20146370 Msa0842770:intron 40.0%
AGTATATCAGTATGGACAGG+AGG + chr5_4:20146538-20146557 None:intergenic 40.0%
GAGACAGAGAGAAGATGCTT+TGG + chr5_4:20140940-20140959 None:intergenic 45.0%
CCAAACAGGGCTTATTAGCT+AGG + chr5_4:20141286-20141305 None:intergenic 45.0%
CCTAGCTAATAAGCCCTGTT+TGG - chr5_4:20141283-20141302 Msa0842770:intron 45.0%
CAGGATTCTCAAGCCAAACT+TGG - chr5_4:20141607-20141626 Msa0842770:intron 45.0%
AGAAATGAGAGGGTGGAAGA+AGG - chr5_4:20141774-20141793 Msa0842770:CDS 45.0%
GAAATGAGAGGGTGGAAGAA+GGG - chr5_4:20141775-20141794 Msa0842770:CDS 45.0%
!! TTCATCTTTTTGGGGGGTAG+GGG - chr5_4:20142487-20142506 Msa0842770:intron 45.0%
GAGTGGAAGTCACTTAGAGA+AGG + chr5_4:20142625-20142644 None:intergenic 45.0%
CGTTTCCCTCAAATTCCTTG+TGG + chr5_4:20142702-20142721 None:intergenic 45.0%
! TACAGAACGAGGCACTTATG+TGG - chr5_4:20142729-20142748 Msa0842770:intron 45.0%
TATGTGGCTCCAACACTTGA+TGG - chr5_4:20142745-20142764 Msa0842770:intron 45.0%
ATGTGGCTCCAACACTTGAT+GGG - chr5_4:20142746-20142765 Msa0842770:intron 45.0%
ATCGAAATACAGCTGGTGTG+TGG - chr5_4:20142824-20142843 Msa0842770:intron 45.0%
TCGAAATACAGCTGGTGTGT+GGG - chr5_4:20142825-20142844 Msa0842770:intron 45.0%
! CTCTGAGGAGTTGTGATCTA+GGG + chr5_4:20143188-20143207 None:intergenic 45.0%
! TCTCTGAGGAGTTGTGATCT+AGG + chr5_4:20143189-20143208 None:intergenic 45.0%
GTCAATATACGAAGAGGGCA+TGG + chr5_4:20143280-20143299 None:intergenic 45.0%
! TTAGCACACTTGTTGGGCTT+AGG - chr5_4:20143351-20143370 Msa0842770:intron 45.0%
CCAGGACTTTCTGATCTAGA+AGG + chr5_4:20144140-20144159 None:intergenic 45.0%
CCTTCTAGATCAGAAAGTCC+TGG - chr5_4:20144137-20144156 Msa0842770:intron 45.0%
AATGGCCTTCTGCAAACTAC+TGG + chr5_4:20144263-20144282 None:intergenic 45.0%
TGCTCACTGACCTTGTATTC+TGG - chr5_4:20144478-20144497 Msa0842770:intron 45.0%
TAGTCAATGTCTAGCACAGG+CGG + chr5_4:20145126-20145145 None:intergenic 45.0%
TCAATGATGTTTCGCCAAGG+AGG + chr5_4:20145377-20145396 None:intergenic 45.0%
CATCACCATATGCACCCTTA+TGG - chr5_4:20145687-20145706 Msa0842770:CDS 45.0%
ACACACCCTAAGGCAACAAT+TGG - chr5_4:20146074-20146093 Msa0842770:intron 45.0%
TGGTTGTCGAGATTGTTCTC+TGG - chr5_4:20146254-20146273 Msa0842770:intron 45.0%
!! ATAAAATATTTATGAAATAA+AGG - chr5_4:20141433-20141452 Msa0842770:intron 5.0%
!! TCATCTTTTTGGGGGGTAGG+GGG - chr5_4:20142488-20142507 Msa0842770:intron 50.0%
CGAAATACAGCTGGTGTGTG+GGG - chr5_4:20142826-20142845 Msa0842770:intron 50.0%
! TACGAAGAGGGCATGGTGAA+GGG + chr5_4:20143273-20143292 None:intergenic 50.0%
! ATACGAAGAGGGCATGGTGA+AGG + chr5_4:20143274-20143293 None:intergenic 50.0%
GACATCCAAAGACTTCCGTC+TGG - chr5_4:20144521-20144540 Msa0842770:intron 50.0%
!! TTTGCTTCCACTTTTGGGGG+AGG + chr5_4:20145021-20145040 None:intergenic 50.0%
AGTCAATGTCTAGCACAGGC+GGG + chr5_4:20145125-20145144 None:intergenic 50.0%
CGGTAGTCAATGTCTAGCAC+AGG + chr5_4:20145129-20145148 None:intergenic 50.0%
! TCCATGCCGTTGTTTCGCTT+TGG - chr5_4:20145560-20145579 Msa0842770:CDS 50.0%
ACCAAAGCGAAACAACGGCA+TGG + chr5_4:20145564-20145583 None:intergenic 50.0%
GGAAGAAGGGCGACGAGAAA+CGG - chr5_4:20141788-20141807 Msa0842770:intron 55.0%
!! CATCTTTTTGGGGGGTAGGG+GGG - chr5_4:20142489-20142508 Msa0842770:intron 55.0%
GTTGGGCTTAGGCACAAACC+AGG - chr5_4:20143362-20143381 Msa0842770:intron 55.0%
GTTAACGCTGTGCTCCTCCT+TGG - chr5_4:20145360-20145379 Msa0842770:intron 55.0%
GAAGGGCGACGAGAAACGGT+TGG - chr5_4:20141792-20141811 Msa0842770:intron 60.0%
TTGGGGGGTAGGGGGGAATT+TGG - chr5_4:20142496-20142515 Msa0842770:intron 60.0%
! GAAGAGGGCATGGTGAAGGG+AGG + chr5_4:20143270-20143289 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20140893 20146569 20140893 ID=Msa0842770;Name=Msa0842770
chr5_4 mRNA 20140893 20146569 20140893 ID=Msa0842770-mRNA-1;Parent=Msa0842770;Name=Msa0842770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171|1|1|1|0.62|0.55|9|271|328
chr5_4 exon 20140893 20141281 20140893 ID=Msa0842770-mRNA-1:exon:8336;Parent=Msa0842770-mRNA-1
chr5_4 exon 20141754 20141801 20141754 ID=Msa0842770-mRNA-1:exon:8335;Parent=Msa0842770-mRNA-1
chr5_4 exon 20141881 20141972 20141881 ID=Msa0842770-mRNA-1:exon:8334;Parent=Msa0842770-mRNA-1
chr5_4 exon 20142058 20142123 20142058 ID=Msa0842770-mRNA-1:exon:8333;Parent=Msa0842770-mRNA-1
chr5_4 exon 20142914 20143003 20142914 ID=Msa0842770-mRNA-1:exon:8332;Parent=Msa0842770-mRNA-1
chr5_4 exon 20144589 20144801 20144589 ID=Msa0842770-mRNA-1:exon:8331;Parent=Msa0842770-mRNA-1
chr5_4 exon 20145027 20145060 20145027 ID=Msa0842770-mRNA-1:exon:8330;Parent=Msa0842770-mRNA-1
chr5_4 exon 20145492 20145874 20145492 ID=Msa0842770-mRNA-1:exon:8329;Parent=Msa0842770-mRNA-1
chr5_4 exon 20146456 20146569 20146456 ID=Msa0842770-mRNA-1:exon:8328;Parent=Msa0842770-mRNA-1
chr5_4 five_prime_UTR 20146456 20146569 20146456 ID=Msa0842770-mRNA-1:five_prime_utr;Parent=Msa0842770-mRNA-1
chr5_4 five_prime_UTR 20145818 20145874 20145818 ID=Msa0842770-mRNA-1:five_prime_utr;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20145492 20145817 20145492 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20145027 20145060 20145027 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20144589 20144801 20144589 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20142914 20143003 20142914 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20142058 20142123 20142058 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20141881 20141972 20141881 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20141754 20141801 20141754 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 CDS 20141164 20141281 20141164 ID=Msa0842770-mRNA-1:cds;Parent=Msa0842770-mRNA-1
chr5_4 three_prime_UTR 20140893 20141163 20140893 ID=Msa0842770-mRNA-1:three_prime_utr;Parent=Msa0842770-mRNA-1
Gene Sequence

>Msa0842770

ATGACACAAGATACTAATACCTTGAGTTATTGGTTGAATTGGAGATTCTTCATATGTGCAATATTTCTTTTATTAACTATGGGCTTAGGATCATTTTTGATATGGAAGTATGAAGAATTCAGTAAATCAAGAAATGAGAGGGTGGAAGAAGGGCGACGAGAAACGGTTGGATTGCTATATGAAGATGAAGCATGGAATACATGTGTTAAAGGAATTCATCCTAATTGGTTGCTTGCTTACAGAATAATTTCTTTTTTTGTGCTTTTGGGTTTGCTCACTGCTAATATAGTTGTTGATGGAGGTGGCATTTTTTACTTCTACACTCAATGGACATTTACTTTGGTCACTATTTACTTTGCGCTTGCATCTTGTTTTTCCTTCTATAGAAGTTGCTTTAACCACAAGGAATTTGAGGGAAACGCATTAGATACAGAACGAGGCACTTATGTGGCTCCAACACTTGATGGGATTTCTGATATACCTGTCTTATCTAAGAGTTCGTATGCCAATCAGGAATCTCTCAATCGAAATACAGCTGGTGTGTGGGGTTATATTATTCAAATATTATTTCAGACTTGTGCAGGTGCTGCAATGCTCACTGACCTTGTATTCTGGCTTGTTATTTATCCGTTTATGACATCCAAAGACTTCCGTCTGGATATTTTCACCGTTGGTATGCACTCTGTTAACGCTGTGCTCCTCCTTGGCGAAACATCATTGAACTGCATGAGCTTTCCAGTGTTTCGATTTGCATATTTTATCTTGTGGACGGCTACATTTGTGATTTTTCAGTGGATCGTCCATGCCGTTGTTTCGCTTTGGTGGCCTTATCCTTTCCTTGATTTGTCATCACCATATGCACCCTTATGGTACTTGGCTGTTGGTATAATGCACATTCCATGTTATGGCTTCTTTGCATTAATAGTGAAGTTGAAGCACTTGTGGTTGTCGAGATTGTTCTCTGGTTCTTGTCAGTTTCTACGGTGA

Protein sequence

>Msa0842770

MTQDTNTLSYWLNWRFFICAIFLLLTMGLGSFLIWKYEEFSKSRNERVEEGRRETVGLLYEDEAWNTCVKGIHPNWLLAYRIISFFVLLGLLTANIVVDGGGIFYFYTQWTFTLVTIYFALASCFSFYRSCFNHKEFEGNALDTERGTYVAPTLDGISDIPVLSKSSYANQESLNRNTAGVWGYIIQILFQTCAGAAMLTDLVFWLVIYPFMTSKDFRLDIFTVGMHSVNAVLLLGETSLNCMSFPVFRFAYFILWTATFVIFQWIVHAVVSLWWPYPFLDLSSPYAPLWYLAVGIMHIPCYGFFALIVKLKHLWLSRLFSGSCQFLR*