AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039760 MtrunA17_Chr7g0271951 92.699 904 15 4 1 853 1 904 0.0 1668
Msa1039760 MtrunA17_Chr4g0061801 36.441 118 70 3 415 528 73 189 7.33e-17 85.1
Msa1039760 MtrunA17_Chr4g0061801 43.617 94 51 1 748 841 518 609 1.21e-14 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039760 AT3G05670.3 36.916 921 467 24 5 853 4 882 6.33e-123 392
Msa1039760 AT3G05670.1 36.916 921 467 24 5 853 4 882 6.33e-123 392
Msa1039760 AT3G05670.2 36.916 921 467 24 5 853 4 882 6.33e-123 392

Find 225 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTATATGGCCTGGAATTT+TGG 0.124200 7_1:+77054306 Msa1039760:CDS
CCTTGAATTGCTCATTCTTA+TGG 0.185613 7_1:-77054233 None:intergenic
AGATGTGGTTAAAAGTATTT+TGG 0.206841 7_1:+77054915 Msa1039760:CDS
TGAATAGCCCTGAAATTAAT+AGG 0.209679 7_1:+77054095 Msa1039760:CDS
CTTGGTTCCCTATTAATTTC+AGG 0.214253 7_1:-77054103 None:intergenic
GAAGAACAAGATGTAGAAAA+AGG 0.255671 7_1:+77052315 Msa1039760:CDS
AAATTCTTCGTCTTCATAAA+TGG 0.258327 7_1:-77052601 None:intergenic
CTTTCGTCTTCTCTTTCTCT+TGG 0.260528 7_1:-77052790 None:intergenic
CTGCTATTTGTTCTGATGGC+TGG 0.262892 7_1:-77052873 None:intergenic
GGGTCTCCATTCGGCATAAA+TGG 0.277383 7_1:-77054205 None:intergenic
CACACTTATTGTGTTGGTTT+GGG 0.278946 7_1:+77053665 Msa1039760:CDS
TTCAAGGGGCCCAGTGGTTC+AGG 0.300572 7_1:+77054249 Msa1039760:CDS
ATTGTCTCAAGATGCTGATT+TGG 0.302977 7_1:+77054486 Msa1039760:CDS
ACATCAACCTTATCAGATTA+TGG 0.305141 7_1:+77054331 Msa1039760:CDS
CGATGAGGATTATGTGGTTT+CGG 0.319604 7_1:+77052050 Msa1039760:CDS
CAACTCAAAGCCTGCCTTCC+CGG 0.326688 7_1:+77053786 Msa1039760:CDS
AGAAGAAGTGGAAGTGGAAA+TGG 0.331735 7_1:+77052434 Msa1039760:CDS
ATCCTTGAAGATGCCAATTC+CGG 0.338850 7_1:+77052927 Msa1039760:CDS
CTTCTAGCAGAGGTCGAAAA+AGG 0.347985 7_1:+77052742 Msa1039760:CDS
GTGCAGGCTTACTGATTGTT+TGG 0.350078 7_1:-77053364 None:intergenic
ACACACTTATTGTGTTGGTT+TGG 0.353037 7_1:+77053664 Msa1039760:CDS
AAGGGGCAGAAAGAAGAAAA+AGG 0.360279 7_1:+77052572 Msa1039760:CDS
TTCAAATACCTGATCACGTT+CGG 0.363155 7_1:-77053423 None:intergenic
GAGAAGTACCTGAAGGTAAT+TGG 0.364011 7_1:+77053690 Msa1039760:CDS
CTTTCTGCTATTTGTTCTGA+TGG 0.368521 7_1:-77052877 None:intergenic
CTCGCAATCTGAGCCGGAAT+TGG 0.377934 7_1:-77052940 None:intergenic
TTGTCTCAAGATGCTGATTT+GGG 0.385700 7_1:+77054487 Msa1039760:CDS
GGCCTGTGAATGCAGCTATA+TGG 0.385787 7_1:+77054293 Msa1039760:CDS
CAGGTGATGGCCGGGAAGGC+AGG 0.388209 7_1:-77053796 None:intergenic
TTTCGTCTTCTCTTTCTCTT+GGG 0.388977 7_1:-77052789 None:intergenic
CTGCTGCTGCATGGGTGGAT+TGG 0.389809 7_1:-77054355 None:intergenic
TCTGTGAAATCTTCTTCCTC+TGG 0.390685 7_1:-77052531 None:intergenic
TCTTCACAGTGGTTACGATT+AGG 0.391290 7_1:+77054949 Msa1039760:CDS
AGAGGAAGAAGAAGTGGAAG+TGG 0.404080 7_1:+77052428 Msa1039760:CDS
GAGTCCACAAGCAGCGAGTA+TGG 0.405089 7_1:-77054764 None:intergenic
TAAATCAGATTCTTGAGCTT+GGG 0.405889 7_1:-77053756 None:intergenic
AGAAGAAGTGGAAGTGGAAG+AGG 0.406597 7_1:+77052476 Msa1039760:CDS
CTCCTGAGTTCTTCTTCAGT+TGG 0.407979 7_1:-77053545 None:intergenic
GTTGATGTCCCCAAAATTCC+AGG 0.409316 7_1:-77054316 None:intergenic
CCCCACATTGAATTAATTGC+TGG 0.411682 7_1:+77054835 Msa1039760:CDS
TGCTATTTGTTCTGATGGCT+GGG 0.413685 7_1:-77052872 None:intergenic
AGTGGAAATGGAAGAGGAAG+AGG 0.416959 7_1:+77052446 Msa1039760:CDS
AGAAGTAGAAGAAGAGGAGG+AGG 0.428320 7_1:+77052350 Msa1039760:CDS
GAAGAGTGAGGTGGGAAAAC+AGG 0.429247 7_1:+77053202 Msa1039760:CDS
GAAGGAGCTTCTCCGATGTC+TGG 0.435810 7_1:+77053926 Msa1039760:CDS
TCTGCTGTTGTTGATCGTGC+AGG 0.435897 7_1:-77053380 None:intergenic
GATAGAATGGCTTCTACAAC+TGG 0.435937 7_1:+77054031 Msa1039760:CDS
AGAAGAAGGCTTTGAAGAAA+AGG 0.437613 7_1:+77052709 Msa1039760:CDS
GTGATTTGAGAAAGAGGGTT+AGG 0.441305 7_1:+77052001 Msa1039760:CDS
TTGGTTCCCTATTAATTTCA+GGG 0.441433 7_1:-77054102 None:intergenic
GCTACGTTCAATTGATAGAA+TGG 0.442187 7_1:+77054018 Msa1039760:CDS
AGAGGAATCTCAAGGAAGAA+AGG 0.442305 7_1:+77053157 Msa1039760:CDS
GGACAAATGAGTATGATTAA+AGG 0.442629 7_1:+77054859 Msa1039760:CDS
TTTAAAGATGCCAAAGCAAC+TGG 0.442699 7_1:-77053731 None:intergenic
GAACACATAACGGACTCATA+TGG 0.444472 7_1:-77053578 None:intergenic
ATACTTTCTCGTATATGAAC+AGG 0.444823 7_1:-77053815 None:intergenic
AGAAAGAGAAGACGAAAGAA+TGG 0.448531 7_1:+77052795 Msa1039760:CDS
AGAGGAGGATGAGGAGGAAG+AGG 0.451552 7_1:+77052410 Msa1039760:CDS
AGAAAGAGGGTTAGGTCAAA+GGG 0.453596 7_1:+77052009 Msa1039760:CDS
GAAGAAGGCTTTGAAGAAAA+GGG 0.453993 7_1:+77052710 Msa1039760:CDS
GAATAGCCCTGAAATTAATA+GGG 0.454184 7_1:+77054096 Msa1039760:CDS
GTTTACAGAAGACGAGGATT+CGG 0.457755 7_1:+77052155 Msa1039760:CDS
GGCCATATAGCTGCATTCAC+AGG 0.458181 7_1:-77054295 None:intergenic
GTTCTTATATGTTGAGAACT+TGG 0.458529 7_1:-77054121 None:intergenic
ATGGTTGAGTCCTGAACCAC+TGG 0.461711 7_1:-77054259 None:intergenic
GCTTCTCCGATGTCTGGAGG+TGG 0.461950 7_1:+77053932 Msa1039760:CDS
TTAAATCAGATTCTTGAGCT+TGG 0.463615 7_1:-77053757 None:intergenic
CCTGCACACACTTATTGTGT+TGG 0.464630 7_1:+77053659 Msa1039760:CDS
TCTTCTTCTTTGACAGTAGC+GGG 0.465078 7_1:-77054406 None:intergenic
AATAGATCGAGGGCTAAAAC+TGG 0.465701 7_1:+77052210 Msa1039760:CDS
TTCAGGTTATAGTACTTTCA+AGG 0.466528 7_1:+77054717 Msa1039760:intron
TCAAATACCTGATCACGTTC+GGG 0.467441 7_1:-77053422 None:intergenic
GAGGACTTGAAGAGTGAGGT+GGG 0.468611 7_1:+77053194 Msa1039760:CDS
TGGACAATCAGACACATTCC+CGG 0.469120 7_1:-77052079 None:intergenic
AGTGGAAGTGGAAATGGAAG+AGG 0.469237 7_1:+77052440 Msa1039760:CDS
CACAGGCCCGTTCGAAAACA+TGG 0.469763 7_1:-77054278 None:intergenic
TGTTTGATCTGCTGCTGCAT+GGG 0.470031 7_1:-77054363 None:intergenic
ATGTTTGATCTGCTGCTGCA+TGG 0.473519 7_1:-77054364 None:intergenic
GCAAACGTGATTTGAGAAAG+AGG 0.473708 7_1:+77051995 Msa1039760:CDS
TGAAGACGAAGAATTTAAAC+CGG 0.473783 7_1:+77052608 Msa1039760:CDS
CTTCTCCGATGTCTGGAGGT+GGG 0.475968 7_1:+77053933 Msa1039760:CDS
GAGGTGAAGACATCAGGTTC+AGG 0.479499 7_1:-77053841 None:intergenic
ATGTATGAGGTGAAGACATC+AGG 0.483949 7_1:-77053847 None:intergenic
GGAGGAAGAGGAAGAAGAAG+TGG 0.485549 7_1:+77052422 Msa1039760:CDS
AGACATCGGAGAAGCTCCTT+CGG 0.486565 7_1:-77053924 None:intergenic
ATGTGGTTTCGGATGATGCC+GGG 0.487381 7_1:+77052061 Msa1039760:CDS
GAGAAAGAGGGTTAGGTCAA+AGG 0.488109 7_1:+77052008 Msa1039760:CDS
TGGTTGTAGACCAGTTGCTT+TGG 0.490683 7_1:+77053721 Msa1039760:CDS
TTTGTAGCTGCTGAACTTGA+CGG 0.493087 7_1:-77053988 None:intergenic
TTCTCCGATGTCTGGAGGTG+GGG 0.496212 7_1:+77053934 Msa1039760:CDS
GAAAGAGATCAGTCCTGAAA+AGG 0.496295 7_1:+77052895 Msa1039760:CDS
CCATAAGAATGAGCAATTCA+AGG 0.500298 7_1:+77054233 Msa1039760:CDS
AGAGGAAGAAGTAGAAGAAG+AGG 0.500587 7_1:+77052344 Msa1039760:CDS
GATTGGTCCATAATCTGATA+AGG 0.500628 7_1:-77054338 None:intergenic
TCACAGTACCAATTACCTTC+AGG 0.502598 7_1:-77053698 None:intergenic
AAAGGAGCGATTGCAGTCAA+TGG 0.505261 7_1:+77054444 Msa1039760:CDS
ACAGATGGTAAAGGGAAGAA+AGG 0.505504 7_1:+77051966 None:intergenic
ATCTCTCCATTTATGCCGAA+TGG 0.505705 7_1:+77054199 Msa1039760:CDS
AGCCGGAATTGGCATCTTCA+AGG 0.506290 7_1:-77052929 None:intergenic
TCTGTGTAATCTTCGTCCTC+CGG 0.506793 7_1:-77052627 None:intergenic
TTGATCTGCTGCTGCATGGG+TGG 0.507527 7_1:-77054360 None:intergenic
GTATATGAACAGGTGATGGC+CGG 0.507755 7_1:-77053805 None:intergenic
ATGGAGAAGGGGTCTCCATT+CGG 0.510870 7_1:-77054214 None:intergenic
TTGCTCATTCTTATGGAGAA+GGG 0.514261 7_1:-77054226 None:intergenic
GGAAGAAGTAGAAGAAGAGG+AGG 0.515469 7_1:+77052347 Msa1039760:CDS
CACGAAGATGGGCAAGAAGA+AGG 0.515519 7_1:+77052695 Msa1039760:CDS
AGAAGACGAGGATTCGGAAA+AGG 0.515658 7_1:+77052161 Msa1039760:CDS
TATGTGGTTTCGGATGATGC+CGG 0.515722 7_1:+77052060 Msa1039760:CDS
GTGAATGCAGCTATATGGCC+TGG 0.517468 7_1:+77054298 Msa1039760:CDS
AGATAACTTGCACATTGTAA+AGG 0.517805 7_1:+77054426 Msa1039760:CDS
GTGGTTACGATTAGGACTTT+AGG 0.519386 7_1:+77054957 Msa1039760:CDS
GAGGAATCTCAAGGAAGAAA+GGG 0.523223 7_1:+77053158 Msa1039760:CDS
GGAAAAGGAGGTGATTCAAC+GGG 0.526113 7_1:+77052176 Msa1039760:CDS
ATCTCAAGGAAGAAAGGGTA+AGG 0.528597 7_1:+77053163 Msa1039760:CDS
ATTGCTCATTCTTATGGAGA+AGG 0.529056 7_1:-77054227 None:intergenic
CACCGTCTCTCTGATAAAGT+TGG 0.530129 7_1:-77053959 None:intergenic
TGATGAAGAGGAGGATGAGG+AGG 0.531417 7_1:+77052404 Msa1039760:CDS
TCTTCGAATGGAAAATGAAG+TGG 0.531620 7_1:+77053070 Msa1039760:CDS
TCAAACATTGTCACTGAGGT+TGG 0.532392 7_1:+77054379 Msa1039760:CDS
AGAGGACTTGAAGAGTGAGG+TGG 0.533578 7_1:+77053193 Msa1039760:CDS
GAGGAGAGCTTCTCTTCGAA+TGG 0.534382 7_1:+77053058 Msa1039760:CDS
CACATTGAATTAATTGCTGG+TGG 0.534434 7_1:+77054838 Msa1039760:CDS
TTTGGATGGATGTGCGGCTG+AGG 0.536263 7_1:+77052119 Msa1039760:CDS
TAATTCAATGTGGGGACAGA+CGG 0.539650 7_1:-77054827 None:intergenic
TGTTGATGAAGAGGAGGATG+AGG 0.540310 7_1:+77052401 Msa1039760:CDS
ATGGAAGCCTCCAGCACGGA+AGG 0.541330 7_1:+77053121 Msa1039760:CDS
ATCTTCTTCTTTGACAGTAG+CGG 0.541489 7_1:-77054407 None:intergenic
TCCTTACCCTTCCGTGCTGG+AGG 0.542762 7_1:-77053128 None:intergenic
CATAAGAATGAGCAATTCAA+GGG 0.546538 7_1:+77054234 Msa1039760:CDS
GAAATATAAGAAGGAACTTG+AGG 0.547708 7_1:+77053039 Msa1039760:CDS
CGAGGGCTAAAACTGGTGTA+AGG 0.548094 7_1:+77052217 Msa1039760:CDS
TCTAGACTCGCAATCTGAGC+CGG 0.548400 7_1:-77052946 None:intergenic
CCAACACAATAAGTGTGTGC+AGG 0.549150 7_1:-77053659 None:intergenic
TCTACAACTGGCAGAACTAT+CGG 0.549352 7_1:+77054043 Msa1039760:CDS
GATCAGTCCTGAAAAGGAGA+AGG 0.552181 7_1:+77052901 Msa1039760:CDS
TGGGGACAGACGGATGGTGG+AGG 0.552215 7_1:-77054817 None:intergenic
ATGACACTCTGAACACATAA+CGG 0.553670 7_1:-77053588 None:intergenic
ATGTGTTCAGAGTGTCATCT+AGG 0.555373 7_1:+77053593 Msa1039760:CDS
TGCTCATTCTTATGGAGAAG+GGG 0.556205 7_1:-77054225 None:intergenic
GAAGGGTAAGGAAAAGATAG+AGG 0.556670 7_1:+77053139 Msa1039760:CDS
GTGTGAGAACAGATGGTAAA+GGG 0.557092 7_1:+77051958 None:intergenic
CAACACAATAAGTGTGTGCA+GGG 0.558064 7_1:-77053658 None:intergenic
TGATTCCGATGAGGATTATG+TGG 0.558363 7_1:+77052044 Msa1039760:CDS
CATACCATACTCGCTGCTTG+TGG 0.558512 7_1:+77054760 Msa1039760:CDS
AGTAGAGGACTTGAAGAGTG+AGG 0.559366 7_1:+77053190 Msa1039760:CDS
ACACTTATTGTGTTGGTTTG+GGG 0.561817 7_1:+77053666 Msa1039760:CDS
GAAGTGGAAGTGGAAGAGGT+AGG 0.562940 7_1:+77052480 Msa1039760:CDS
ATTCAAGTTACTTACTGTAC+CGG 0.563595 7_1:-77054077 None:intergenic
TACAAAAGAATCAAAACAAG+AGG 0.565655 7_1:-77054890 None:intergenic
ACCAGCAATTAATTCAATGT+GGG 0.568218 7_1:-77054836 None:intergenic
ATGTGGGGACAGACGGATGG+TGG 0.575769 7_1:-77054820 None:intergenic
CCTTGACTAAAAGATGTATG+AGG 0.577067 7_1:-77053860 None:intergenic
ATCAGTCCTGAAAAGGAGAA+GGG 0.579310 7_1:+77052902 Msa1039760:CDS
CAAACGTGATTTGAGAAAGA+GGG 0.579793 7_1:+77051996 Msa1039760:CDS
ATGAAGATCTACATCAGCAA+TGG 0.581305 7_1:+77053102 Msa1039760:CDS
ATGAGGAGGAAGAAGAAACA+AGG 0.582110 7_1:+77052553 Msa1039760:CDS
AGAACAGGTGAGAGAAGCCG+TGG 0.582933 7_1:+77053007 Msa1039760:CDS
AGAAGATTTCACAGATGAGG+AGG 0.583606 7_1:+77052539 Msa1039760:CDS
CGGAAAAGGAGGTGATTCAA+CGG 0.587891 7_1:+77052175 Msa1039760:CDS
ACTATCGGTGTTTCAGCTAC+CGG 0.588312 7_1:+77054058 Msa1039760:CDS
TGAGGAGGAAGAAGAAACAA+GGG 0.589315 7_1:+77052554 Msa1039760:CDS
GGAAGAAGATTTCACAGATG+AGG 0.590315 7_1:+77052536 Msa1039760:CDS
CACCAGCAATTAATTCAATG+TGG 0.590559 7_1:-77054837 None:intergenic
ACGATCAACAACAGCAGAAG+AGG 0.590744 7_1:+77053385 Msa1039760:CDS
TATATGAACAGGTGATGGCC+GGG 0.592446 7_1:-77053804 None:intergenic
TGACTAAATTTAATAGATCG+AGG 0.593160 7_1:+77052199 Msa1039760:CDS
TATATTTCCACACAACTCCA+CGG 0.596331 7_1:-77053024 None:intergenic
AGTTGTGTGGAAATATAAGA+AGG 0.598804 7_1:+77053030 Msa1039760:CDS
ATAGTAAACTCATAATCAGA+TGG 0.599794 7_1:-77052969 None:intergenic
GGAGCTTCTCCGATGTCTGG+AGG 0.601337 7_1:+77053929 Msa1039760:CDS
GTACTTTCAAGGACATTGCA+AGG 0.602317 7_1:+77054728 Msa1039760:CDS
TGAACAGGTGATGGCCGGGA+AGG 0.603021 7_1:-77053800 None:intergenic
AGGGTTAGGTCAAAGGGCAG+TGG 0.607527 7_1:+77052015 Msa1039760:CDS
TCTCGTATATGAACAGGTGA+TGG 0.613237 7_1:-77053809 None:intergenic
CGAATGGAAAATGAAGTGGT+TGG 0.613778 7_1:+77053074 Msa1039760:CDS
TTACAATGATGTTGATGAAG+AGG 0.614390 7_1:+77052392 Msa1039760:CDS
GAAAAGATAGAGGAATCTCA+AGG 0.614767 7_1:+77053149 Msa1039760:CDS
GGTGCCCCACCTCCAGACAT+CGG 0.618253 7_1:-77053938 None:intergenic
CGAAACCACATAATCCTCAT+CGG 0.618800 7_1:-77052049 None:intergenic
GACTAAATTTAATAGATCGA+GGG 0.620528 7_1:+77052200 Msa1039760:CDS
AGCCAACTGAAGAAGAACTC+AGG 0.620739 7_1:+77053543 Msa1039760:CDS
GTTTCTGCAACTTCTAGCAG+AGG 0.621858 7_1:+77052732 Msa1039760:CDS
TCAATGTGGGGACAGACGGA+TGG 0.622245 7_1:-77054823 None:intergenic
CACCAACTTTATCAGAGAGA+CGG 0.623622 7_1:+77053957 Msa1039760:CDS
CAATGATGTTGATGAAGAGG+AGG 0.631719 7_1:+77052395 Msa1039760:CDS
AAGCCTCGAGGAAGAGACAG+AGG 0.635561 7_1:+77052262 Msa1039760:CDS
CGAAGATTACACAGATGAGG+AGG 0.635569 7_1:+77052635 Msa1039760:CDS
AAACTGGTGTAAGGCGTCAG+CGG 0.637909 7_1:+77052226 Msa1039760:CDS
AGACGAGGATTCGGAAAAGG+AGG 0.639148 7_1:+77052164 Msa1039760:CDS
TGATGGGTTTACAGAAGACG+AGG 0.641413 7_1:+77052149 Msa1039760:CDS
TGTGTGAGAACAGATGGTAA+AGG 0.641607 7_1:+77051957 None:intergenic
GAGCAATTCAAGGGGCCCAG+TGG 0.643280 7_1:+77054243 Msa1039760:CDS
TTCTCAACATATAAGAACAC+AGG 0.644148 7_1:+77054126 Msa1039760:CDS
ATGAGGAGGAAGAAGAAACA+AGG 0.644891 7_1:+77052649 Msa1039760:CDS
AGAGAAGCCGTGGAGTTGTG+TGG 0.645101 7_1:+77053017 Msa1039760:CDS
ATCAACAACAGCAGAAGAGG+CGG 0.646830 7_1:+77053388 Msa1039760:CDS
GGACGAAGATTACACAGATG+AGG 0.652228 7_1:+77052632 Msa1039760:CDS
AGCAATGGAAGCCTCCAGCA+CGG 0.653022 7_1:+77053117 Msa1039760:CDS
CATATAAGAACACAGGACGT+AGG 0.654634 7_1:+77054133 Msa1039760:CDS
AAGAGAAGACGAAAGAATGG+AGG 0.656131 7_1:+77052798 Msa1039760:CDS
AACCCTCTGTCTCTTCCTCG+AGG 0.660516 7_1:-77052265 None:intergenic
TGGAAGCCTCCAGCACGGAA+GGG 0.661115 7_1:+77053122 Msa1039760:CDS
GGATGATGAATTTAAACCAG+AGG 0.661228 7_1:+77052515 Msa1039760:CDS
TGTCATCTAGGTGGAGACGA+TGG 0.665066 7_1:+77053605 Msa1039760:CDS
TGTTCAGAGTGTCATCTAGG+TGG 0.667853 7_1:+77053596 Msa1039760:CDS
CCAGCAATTAATTCAATGTG+GGG 0.670551 7_1:-77054835 None:intergenic
CAACTTTATCAGAGAGACGG+TGG 0.672641 7_1:+77053960 Msa1039760:CDS
GAAGGTAATTGGTACTGTGA+TGG 0.672974 7_1:+77053701 Msa1039760:CDS
TTGGGGAGAGAAGTACCTGA+AGG 0.674115 7_1:+77053683 Msa1039760:CDS
GAGGAGGAAGAAGAAACAAG+GGG 0.676574 7_1:+77052555 Msa1039760:CDS
AGCCTCGAGGAAGAGACAGA+GGG 0.680363 7_1:+77052263 Msa1039760:CDS
TGGTTCTGATGATTCCGATG+AGG 0.681336 7_1:+77052035 Msa1039760:CDS
AGAGGTAGGTGAAAATGATG+AGG 0.685918 7_1:+77052494 Msa1039760:CDS
TCAAGAATCTGATTTAAGAG+CGG 0.691879 7_1:+77053763 Msa1039760:CDS
AGACGAAGAATTTAAACCGG+AGG 0.693269 7_1:+77052611 Msa1039760:CDS
CAGATCAAACATTGTCACTG+AGG 0.704891 7_1:+77054375 Msa1039760:CDS
ATAAGAATGAGCAATTCAAG+GGG 0.716344 7_1:+77054235 Msa1039760:CDS
ATATATCACAGAGTAGCATG+AGG 0.719343 7_1:-77053628 None:intergenic
GAATGTGTCTGATTGTCCAG+AGG 0.723141 7_1:+77052083 Msa1039760:CDS
AACACAATAAGTGTGTGCAG+GGG 0.725731 7_1:-77053657 None:intergenic
TGGTTGAGTCCTGAACCACT+GGG 0.728842 7_1:-77054258 None:intergenic
ACTCGAGCACAATACGAGTG+AGG 0.731655 7_1:+77054783 Msa1039760:CDS
CTAATGTAAGTAAAGCCTCG+AGG 0.731857 7_1:+77052250 Msa1039760:CDS
GAAAGAATGGAGGATCAACG+AGG 0.744731 7_1:+77052808 Msa1039760:CDS
ACACAAGAATGTCTTCACAG+TGG 0.768688 7_1:+77054938 Msa1039760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGATTTTACATGC+AGG + chr7_1:77053514-77053533 Msa1039760:intron 20.0%
!! CTTCTATCATTTATATATCA+TGG + chr7_1:77054516-77054535 Msa1039760:intron 20.0%
! TGACTAAATTTAATAGATCG+AGG + chr7_1:77052199-77052218 Msa1039760:CDS 25.0%
! GACTAAATTTAATAGATCGA+GGG + chr7_1:77052200-77052219 Msa1039760:CDS 25.0%
! AAATTCTTCGTCTTCATAAA+TGG - chr7_1:77052604-77052623 None:intergenic 25.0%
! CGCATTAAGAAGAAAAATAA+TGG + chr7_1:77052672-77052691 Msa1039760:CDS 25.0%
! ATAGTAAACTCATAATCAGA+TGG - chr7_1:77052972-77052991 None:intergenic 25.0%
! AGGAAAATAAAAGAAGAGTA+AGG + chr7_1:77053246-77053265 Msa1039760:intron 25.0%
! GGAAAATAAAAGAAGAGTAA+GGG + chr7_1:77053247-77053266 Msa1039760:intron 25.0%
! GAAAATAAAAGAAGAGTAAG+GGG + chr7_1:77053248-77053267 Msa1039760:intron 25.0%
!!! AAATTTTGACCATTTGCTTA+TGG + chr7_1:77053460-77053479 Msa1039760:intron 25.0%
! TCATCATTCATTACATCATA+AGG + chr7_1:77054543-77054562 Msa1039760:intron 25.0%
!!! TTACAGATTTCTAGTATCAT+AGG - chr7_1:77054603-77054622 None:intergenic 25.0%
! ATGATACTAGAAATCTGTAA+TGG + chr7_1:77054603-77054622 Msa1039760:intron 25.0%
!!! TGTCTTTTATGTATTGATTC+AGG + chr7_1:77054700-77054719 Msa1039760:intron 25.0%
! TACAAAAGAATCAAAACAAG+AGG - chr7_1:77054893-77054912 None:intergenic 25.0%
!!! TCTTGTTTTGATTCTTTTGT+AGG + chr7_1:77054892-77054911 Msa1039760:CDS 25.0%
!!! AGATGTGGTTAAAAGTATTT+TGG + chr7_1:77054915-77054934 Msa1039760:CDS 25.0%
AAAGAAAAACAATCATCCTC+TGG - chr7_1:77052102-77052121 None:intergenic 30.0%
!! AGAGGATGATTGTTTTTCTT+TGG + chr7_1:77052101-77052120 Msa1039760:CDS 30.0%
!! GATGATTGTTTTTCTTTGGA+TGG + chr7_1:77052105-77052124 Msa1039760:CDS 30.0%
GAAGAACAAGATGTAGAAAA+AGG + chr7_1:77052315-77052334 Msa1039760:CDS 30.0%
! TTACAATGATGTTGATGAAG+AGG + chr7_1:77052392-77052411 Msa1039760:CDS 30.0%
TGAAGACGAAGAATTTAAAC+CGG + chr7_1:77052608-77052627 Msa1039760:CDS 30.0%
AAAAATAATGGCACGAAGAT+GGG + chr7_1:77052684-77052703 Msa1039760:CDS 30.0%
!!! TGATGATGCAGATGATTTTT+TGG + chr7_1:77052842-77052861 Msa1039760:CDS 30.0%
AGTTGTGTGGAAATATAAGA+AGG + chr7_1:77053030-77053049 Msa1039760:CDS 30.0%
GAAATATAAGAAGGAACTTG+AGG + chr7_1:77053039-77053058 Msa1039760:CDS 30.0%
! TTTTTGCTTTGCTTGCATTA+TGG + chr7_1:77053295-77053314 Msa1039760:intron 30.0%
ATTGCAAAACCATAAGCAAA+TGG - chr7_1:77053472-77053491 None:intergenic 30.0%
TAAATCAGATTCTTGAGCTT+GGG - chr7_1:77053759-77053778 None:intergenic 30.0%
TTAAATCAGATTCTTGAGCT+TGG - chr7_1:77053760-77053779 None:intergenic 30.0%
TCAAGAATCTGATTTAAGAG+CGG + chr7_1:77053763-77053782 Msa1039760:CDS 30.0%
ATACTTTCTCGTATATGAAC+AGG - chr7_1:77053818-77053837 None:intergenic 30.0%
! CTCATACATCTTTTAGTCAA+GGG + chr7_1:77053861-77053880 Msa1039760:CDS 30.0%
! CTTTCATCTTCTAGATTTTC+TGG + chr7_1:77053893-77053912 Msa1039760:CDS 30.0%
! ATTCAAGTTACTTACTGTAC+CGG - chr7_1:77054080-77054099 None:intergenic 30.0%
TGAATAGCCCTGAAATTAAT+AGG + chr7_1:77054095-77054114 Msa1039760:CDS 30.0%
GAATAGCCCTGAAATTAATA+GGG + chr7_1:77054096-77054115 Msa1039760:CDS 30.0%
TTGGTTCCCTATTAATTTCA+GGG - chr7_1:77054105-77054124 None:intergenic 30.0%
GTTCTTATATGTTGAGAACT+TGG - chr7_1:77054124-77054143 None:intergenic 30.0%
TTCTCAACATATAAGAACAC+AGG + chr7_1:77054126-77054145 Msa1039760:CDS 30.0%
!!! ATCCTATCACACATTTTTTG+AGG + chr7_1:77054159-77054178 Msa1039760:CDS 30.0%
!!! ACATTTTTTGAGGAGAGATT+AGG + chr7_1:77054169-77054188 Msa1039760:CDS 30.0%
CATAAGAATGAGCAATTCAA+GGG + chr7_1:77054234-77054253 Msa1039760:CDS 30.0%
ATAAGAATGAGCAATTCAAG+GGG + chr7_1:77054235-77054254 Msa1039760:CDS 30.0%
ACATCAACCTTATCAGATTA+TGG + chr7_1:77054331-77054350 Msa1039760:CDS 30.0%
! AGATAACTTGCACATTGTAA+AGG + chr7_1:77054426-77054445 Msa1039760:CDS 30.0%
!! CCATTACAGATTTCTAGTAA+TGG - chr7_1:77054575-77054594 None:intergenic 30.0%
CCATTACTAGAAATCTGTAA+TGG + chr7_1:77054572-77054591 Msa1039760:intron 30.0%
! TCAACGAAGATTCTTTTCAT+AGG - chr7_1:77054634-77054653 None:intergenic 30.0%
! TTCAGGTTATAGTACTTTCA+AGG + chr7_1:77054717-77054736 Msa1039760:intron 30.0%
ACCAGCAATTAATTCAATGT+GGG - chr7_1:77054839-77054858 None:intergenic 30.0%
GGACAAATGAGTATGATTAA+AGG + chr7_1:77054859-77054878 Msa1039760:CDS 30.0%
CAAACGTGATTTGAGAAAGA+GGG + chr7_1:77051996-77052015 Msa1039760:CDS 35.0%
! TTTTTCTTTGGATGGATGTG+CGG + chr7_1:77052113-77052132 Msa1039760:CDS 35.0%
TCTTGTTCTTCTTCTTCTTC+TGG - chr7_1:77052306-77052325 None:intergenic 35.0%
AGAGGAAGAAAAAGAAGAAG+TGG + chr7_1:77052464-77052483 Msa1039760:CDS 35.0%
AGAAAAAGAAGAAGTGGAAG+TGG + chr7_1:77052470-77052489 Msa1039760:CDS 35.0%
GGATGATGAATTTAAACCAG+AGG + chr7_1:77052515-77052534 Msa1039760:CDS 35.0%
GAAAAATAATGGCACGAAGA+TGG + chr7_1:77052683-77052702 Msa1039760:CDS 35.0%
!! AGAAGAAGGCTTTGAAGAAA+AGG + chr7_1:77052709-77052728 Msa1039760:CDS 35.0%
!! GAAGAAGGCTTTGAAGAAAA+GGG + chr7_1:77052710-77052729 Msa1039760:CDS 35.0%
TTTCGTCTTCTCTTTCTCTT+GGG - chr7_1:77052792-77052811 None:intergenic 35.0%
AGAAAGAGAAGACGAAAGAA+TGG + chr7_1:77052795-77052814 Msa1039760:CDS 35.0%
! CTTTCTGCTATTTGTTCTGA+TGG - chr7_1:77052880-77052899 None:intergenic 35.0%
! CTCTGAAGAAGAAAAAGAAC+AGG + chr7_1:77052992-77053011 Msa1039760:CDS 35.0%
TATATTTCCACACAACTCCA+CGG - chr7_1:77053027-77053046 None:intergenic 35.0%
TCTTCGAATGGAAAATGAAG+TGG + chr7_1:77053070-77053089 Msa1039760:CDS 35.0%
ATGAAGATCTACATCAGCAA+TGG + chr7_1:77053102-77053121 Msa1039760:CDS 35.0%
GAAAAGATAGAGGAATCTCA+AGG + chr7_1:77053149-77053168 Msa1039760:CDS 35.0%
AAAGGGTAAGGAAAAAGTAG+AGG + chr7_1:77053175-77053194 Msa1039760:CDS 35.0%
TTCAAATACCTGATCACGTT+CGG - chr7_1:77053426-77053445 None:intergenic 35.0%
ATGACACTCTGAACACATAA+CGG - chr7_1:77053591-77053610 None:intergenic 35.0%
ATATATCACAGAGTAGCATG+AGG - chr7_1:77053631-77053650 None:intergenic 35.0%
!! ACACACTTATTGTGTTGGTT+TGG + chr7_1:77053664-77053683 Msa1039760:CDS 35.0%
!! CACACTTATTGTGTTGGTTT+GGG + chr7_1:77053665-77053684 Msa1039760:CDS 35.0%
!! ACACTTATTGTGTTGGTTTG+GGG + chr7_1:77053666-77053685 Msa1039760:CDS 35.0%
TTTAAAGATGCCAAAGCAAC+TGG - chr7_1:77053734-77053753 None:intergenic 35.0%
CCTTGACTAAAAGATGTATG+AGG - chr7_1:77053863-77053882 None:intergenic 35.0%
! CCTCATACATCTTTTAGTCA+AGG + chr7_1:77053860-77053879 Msa1039760:CDS 35.0%
! ACATCTTTTAGTCAAGGGTT+CGG + chr7_1:77053866-77053885 Msa1039760:CDS 35.0%
GCTACGTTCAATTGATAGAA+TGG + chr7_1:77054018-77054037 Msa1039760:CDS 35.0%
CTTGGTTCCCTATTAATTTC+AGG - chr7_1:77054106-77054125 None:intergenic 35.0%
CTCCTCAAAAAATGTGTGAT+AGG - chr7_1:77054164-77054183 None:intergenic 35.0%
TTGCTCATTCTTATGGAGAA+GGG - chr7_1:77054229-77054248 None:intergenic 35.0%
ATTGCTCATTCTTATGGAGA+AGG - chr7_1:77054230-77054249 None:intergenic 35.0%
CCTTGAATTGCTCATTCTTA+TGG - chr7_1:77054236-77054255 None:intergenic 35.0%
CCATAAGAATGAGCAATTCA+AGG + chr7_1:77054233-77054252 Msa1039760:CDS 35.0%
! GATTGGTCCATAATCTGATA+AGG - chr7_1:77054341-77054360 None:intergenic 35.0%
ATCTTCTTCTTTGACAGTAG+CGG - chr7_1:77054410-77054429 None:intergenic 35.0%
! ATTGTCTCAAGATGCTGATT+TGG + chr7_1:77054486-77054505 Msa1039760:CDS 35.0%
!! TTGTCTCAAGATGCTGATTT+GGG + chr7_1:77054487-77054506 Msa1039760:CDS 35.0%
CCAGCAATTAATTCAATGTG+GGG - chr7_1:77054838-77054857 None:intergenic 35.0%
CACCAGCAATTAATTCAATG+TGG - chr7_1:77054840-77054859 None:intergenic 35.0%
CACATTGAATTAATTGCTGG+TGG + chr7_1:77054838-77054857 Msa1039760:CDS 35.0%
! TGATTCTTTTGTAGGAGATG+TGG + chr7_1:77054900-77054919 Msa1039760:CDS 35.0%
GCAAACGTGATTTGAGAAAG+AGG + chr7_1:77051995-77052014 Msa1039760:CDS 40.0%
GTGATTTGAGAAAGAGGGTT+AGG + chr7_1:77052001-77052020 Msa1039760:CDS 40.0%
AGAAAGAGGGTTAGGTCAAA+GGG + chr7_1:77052009-77052028 Msa1039760:CDS 40.0%
TGATTCCGATGAGGATTATG+TGG + chr7_1:77052044-77052063 Msa1039760:CDS 40.0%
CGAAACCACATAATCCTCAT+CGG - chr7_1:77052052-77052071 None:intergenic 40.0%
CGATGAGGATTATGTGGTTT+CGG + chr7_1:77052050-77052069 Msa1039760:CDS 40.0%
GTTTACAGAAGACGAGGATT+CGG + chr7_1:77052155-77052174 Msa1039760:CDS 40.0%
AATAGATCGAGGGCTAAAAC+TGG + chr7_1:77052210-77052229 Msa1039760:CDS 40.0%
CTAATGTAAGTAAAGCCTCG+AGG + chr7_1:77052250-77052269 Msa1039760:CDS 40.0%
TGTAGAAAAAGGAGACGAAG+AGG + chr7_1:77052326-77052345 Msa1039760:CDS 40.0%
AGAGGAAGAAGTAGAAGAAG+AGG + chr7_1:77052344-77052363 Msa1039760:CDS 40.0%
! CAATGATGTTGATGAAGAGG+AGG + chr7_1:77052395-77052414 Msa1039760:CDS 40.0%
AGAAGAAGTGGAAGTGGAAA+TGG + chr7_1:77052434-77052453 Msa1039760:CDS 40.0%
AGAGGTAGGTGAAAATGATG+AGG + chr7_1:77052494-77052513 Msa1039760:CDS 40.0%
TCTGTGAAATCTTCTTCCTC+TGG - chr7_1:77052534-77052553 None:intergenic 40.0%
GGAAGAAGATTTCACAGATG+AGG + chr7_1:77052536-77052555 Msa1039760:CDS 40.0%
AGAAGATTTCACAGATGAGG+AGG + chr7_1:77052539-77052558 Msa1039760:CDS 40.0%
ATGAGGAGGAAGAAGAAACA+AGG + chr7_1:77052553-77052572 Msa1039760:CDS 40.0%
TGAGGAGGAAGAAGAAACAA+GGG + chr7_1:77052554-77052573 Msa1039760:CDS 40.0%
AAGGGGCAGAAAGAAGAAAA+AGG + chr7_1:77052572-77052591 Msa1039760:CDS 40.0%
AGACGAAGAATTTAAACCGG+AGG + chr7_1:77052611-77052630 Msa1039760:CDS 40.0%
ATGAGGAGGAAGAAGAAACA+AGG + chr7_1:77052553-77052572 Msa1039760:CDS 40.0%
CTTTCGTCTTCTCTTTCTCT+TGG - chr7_1:77052793-77052812 None:intergenic 40.0%
AAGAGAAGACGAAAGAATGG+AGG + chr7_1:77052798-77052817 Msa1039760:CDS 40.0%
! TGCTATTTGTTCTGATGGCT+GGG - chr7_1:77052875-77052894 None:intergenic 40.0%
GAAAGAGATCAGTCCTGAAA+AGG + chr7_1:77052895-77052914 Msa1039760:CDS 40.0%
ATCAGTCCTGAAAAGGAGAA+GGG + chr7_1:77052902-77052921 Msa1039760:CDS 40.0%
ATCCTTGAAGATGCCAATTC+CGG + chr7_1:77052927-77052946 Msa1039760:CDS 40.0%
CGAATGGAAAATGAAGTGGT+TGG + chr7_1:77053074-77053093 Msa1039760:CDS 40.0%
GAAGGGTAAGGAAAAGATAG+AGG + chr7_1:77053139-77053158 Msa1039760:CDS 40.0%
AGAGGAATCTCAAGGAAGAA+AGG + chr7_1:77053157-77053176 Msa1039760:CDS 40.0%
GAGGAATCTCAAGGAAGAAA+GGG + chr7_1:77053158-77053177 Msa1039760:CDS 40.0%
ATCTCAAGGAAGAAAGGGTA+AGG + chr7_1:77053163-77053182 Msa1039760:CDS 40.0%
TTGCATTATGGAGTGGTCAA+AGG + chr7_1:77053307-77053326 Msa1039760:intron 40.0%
GGAATCTCTGCTTACACAAA+GGG - chr7_1:77053346-77053365 None:intergenic 40.0%
TGGAATCTCTGCTTACACAA+AGG - chr7_1:77053347-77053366 None:intergenic 40.0%
TCAAATACCTGATCACGTTC+GGG - chr7_1:77053425-77053444 None:intergenic 40.0%
!! GAACACATAACGGACTCATA+TGG - chr7_1:77053581-77053600 None:intergenic 40.0%
! ATGTGTTCAGAGTGTCATCT+AGG + chr7_1:77053593-77053612 Msa1039760:CDS 40.0%
AACACAATAAGTGTGTGCAG+GGG - chr7_1:77053660-77053679 None:intergenic 40.0%
CAACACAATAAGTGTGTGCA+GGG - chr7_1:77053661-77053680 None:intergenic 40.0%
!! GAGAAGTACCTGAAGGTAAT+TGG + chr7_1:77053690-77053709 Msa1039760:CDS 40.0%
TCACAGTACCAATTACCTTC+AGG - chr7_1:77053701-77053720 None:intergenic 40.0%
GAAGGTAATTGGTACTGTGA+TGG + chr7_1:77053701-77053720 Msa1039760:CDS 40.0%
TCTCGTATATGAACAGGTGA+TGG - chr7_1:77053812-77053831 None:intergenic 40.0%
ATGTATGAGGTGAAGACATC+AGG - chr7_1:77053850-77053869 None:intergenic 40.0%
! CATCTTTTAGTCAAGGGTTC+GGG + chr7_1:77053867-77053886 Msa1039760:CDS 40.0%
CACCAACTTTATCAGAGAGA+CGG + chr7_1:77053957-77053976 Msa1039760:CDS 40.0%
TTTGTAGCTGCTGAACTTGA+CGG - chr7_1:77053991-77054010 None:intergenic 40.0%
GATAGAATGGCTTCTACAAC+TGG + chr7_1:77054031-77054050 Msa1039760:CDS 40.0%
TCTACAACTGGCAGAACTAT+CGG + chr7_1:77054043-77054062 Msa1039760:CDS 40.0%
CATATAAGAACACAGGACGT+AGG + chr7_1:77054133-77054152 Msa1039760:CDS 40.0%
ATCTCTCCATTTATGCCGAA+TGG + chr7_1:77054199-77054218 Msa1039760:CDS 40.0%
TGCTCATTCTTATGGAGAAG+GGG - chr7_1:77054228-77054247 None:intergenic 40.0%
! GACTCAACCATGTTTTCGAA+CGG + chr7_1:77054271-77054290 Msa1039760:CDS 40.0%
! ACTCAACCATGTTTTCGAAC+GGG + chr7_1:77054272-77054291 Msa1039760:CDS 40.0%
! AGCTATATGGCCTGGAATTT+TGG + chr7_1:77054306-77054325 Msa1039760:CDS 40.0%
! GCTATATGGCCTGGAATTTT+GGG + chr7_1:77054307-77054326 Msa1039760:CDS 40.0%
! CTATATGGCCTGGAATTTTG+GGG + chr7_1:77054308-77054327 Msa1039760:CDS 40.0%
CAGATCAAACATTGTCACTG+AGG + chr7_1:77054375-77054394 Msa1039760:CDS 40.0%
TCAAACATTGTCACTGAGGT+TGG + chr7_1:77054379-77054398 Msa1039760:CDS 40.0%
TCTTCTTCTTTGACAGTAGC+GGG - chr7_1:77054409-77054428 None:intergenic 40.0%
GTACTTTCAAGGACATTGCA+AGG + chr7_1:77054728-77054747 Msa1039760:CDS 40.0%
TAATTCAATGTGGGGACAGA+CGG - chr7_1:77054830-77054849 None:intergenic 40.0%
CCCCACATTGAATTAATTGC+TGG + chr7_1:77054835-77054854 Msa1039760:CDS 40.0%
ACACAAGAATGTCTTCACAG+TGG + chr7_1:77054938-77054957 Msa1039760:CDS 40.0%
TCTTCACAGTGGTTACGATT+AGG + chr7_1:77054949-77054968 Msa1039760:CDS 40.0%
GAGAAAGAGGGTTAGGTCAA+AGG + chr7_1:77052008-77052027 Msa1039760:CDS 45.0%
!! TGGTTCTGATGATTCCGATG+AGG + chr7_1:77052035-77052054 Msa1039760:CDS 45.0%
TATGTGGTTTCGGATGATGC+CGG + chr7_1:77052060-77052079 Msa1039760:CDS 45.0%
TGGACAATCAGACACATTCC+CGG - chr7_1:77052082-77052101 None:intergenic 45.0%
GAATGTGTCTGATTGTCCAG+AGG + chr7_1:77052083-77052102 Msa1039760:CDS 45.0%
!!! CGGCTGAGGATAGTTTTGAT+GGG + chr7_1:77052133-77052152 Msa1039760:CDS 45.0%
!! TGATGGGTTTACAGAAGACG+AGG + chr7_1:77052149-77052168 Msa1039760:CDS 45.0%
AGAAGACGAGGATTCGGAAA+AGG + chr7_1:77052161-77052180 Msa1039760:CDS 45.0%
CGGAAAAGGAGGTGATTCAA+CGG + chr7_1:77052175-77052194 Msa1039760:CDS 45.0%
GGAAAAGGAGGTGATTCAAC+GGG + chr7_1:77052176-77052195 Msa1039760:CDS 45.0%
GGAAGAAGTAGAAGAAGAGG+AGG + chr7_1:77052347-77052366 Msa1039760:CDS 45.0%
AGAAGTAGAAGAAGAGGAGG+AGG + chr7_1:77052350-77052369 Msa1039760:CDS 45.0%
! TGTTGATGAAGAGGAGGATG+AGG + chr7_1:77052401-77052420 Msa1039760:CDS 45.0%
AGAGGAAGAAGAAGTGGAAG+TGG + chr7_1:77052428-77052447 Msa1039760:CDS 45.0%
AGTGGAAGTGGAAATGGAAG+AGG + chr7_1:77052440-77052459 Msa1039760:CDS 45.0%
AGTGGAAATGGAAGAGGAAG+AGG + chr7_1:77052446-77052465 Msa1039760:CDS 45.0%
AGAAGAAGTGGAAGTGGAAG+AGG + chr7_1:77052476-77052495 Msa1039760:CDS 45.0%
GAGGAGGAAGAAGAAACAAG+GGG + chr7_1:77052555-77052574 Msa1039760:CDS 45.0%
TCTGTGTAATCTTCGTCCTC+CGG - chr7_1:77052630-77052649 None:intergenic 45.0%
GGACGAAGATTACACAGATG+AGG + chr7_1:77052632-77052651 Msa1039760:CDS 45.0%
CGAAGATTACACAGATGAGG+AGG + chr7_1:77052635-77052654 Msa1039760:CDS 45.0%
GTTTCTGCAACTTCTAGCAG+AGG + chr7_1:77052732-77052751 Msa1039760:CDS 45.0%
CTTCTAGCAGAGGTCGAAAA+AGG + chr7_1:77052742-77052761 Msa1039760:CDS 45.0%
GAAAGAATGGAGGATCAACG+AGG + chr7_1:77052808-77052827 Msa1039760:CDS 45.0%
! CTGCTATTTGTTCTGATGGC+TGG - chr7_1:77052876-77052895 None:intergenic 45.0%
GATCAGTCCTGAAAAGGAGA+AGG + chr7_1:77052901-77052920 Msa1039760:CDS 45.0%
! GGATAACCCTTCTCCTTTTC+AGG - chr7_1:77052911-77052930 None:intergenic 45.0%
AGTAGAGGACTTGAAGAGTG+AGG + chr7_1:77053190-77053209 Msa1039760:CDS 45.0%
GTGTGGAATTTGTCTGTCTG+AGG + chr7_1:77053226-77053245 Msa1039760:intron 45.0%
GCTTTGCTTGCATTATGGAG+TGG + chr7_1:77053300-77053319 Msa1039760:intron 45.0%
! GTGCAGGCTTACTGATTGTT+TGG - chr7_1:77053367-77053386 None:intergenic 45.0%
ACGATCAACAACAGCAGAAG+AGG + chr7_1:77053385-77053404 Msa1039760:CDS 45.0%
ATCAACAACAGCAGAAGAGG+CGG + chr7_1:77053388-77053407 Msa1039760:CDS 45.0%
AGCCAACTGAAGAAGAACTC+AGG + chr7_1:77053543-77053562 Msa1039760:CDS 45.0%
CTCCTGAGTTCTTCTTCAGT+TGG - chr7_1:77053548-77053567 None:intergenic 45.0%
! TGTTCAGAGTGTCATCTAGG+TGG + chr7_1:77053596-77053615 Msa1039760:CDS 45.0%
CCAACACAATAAGTGTGTGC+AGG - chr7_1:77053662-77053681 None:intergenic 45.0%
CCTGCACACACTTATTGTGT+TGG + chr7_1:77053659-77053678 Msa1039760:CDS 45.0%
TGGTTGTAGACCAGTTGCTT+TGG + chr7_1:77053721-77053740 Msa1039760:CDS 45.0%
! TATATGAACAGGTGATGGCC+GGG - chr7_1:77053807-77053826 None:intergenic 45.0%
! GTATATGAACAGGTGATGGC+CGG - chr7_1:77053808-77053827 None:intergenic 45.0%
!!! TTTTCTGGCAGAAGTACCGA+AGG + chr7_1:77053908-77053927 Msa1039760:CDS 45.0%
CACCGTCTCTCTGATAAAGT+TGG - chr7_1:77053962-77053981 None:intergenic 45.0%
CAACTTTATCAGAGAGACGG+TGG + chr7_1:77053960-77053979 Msa1039760:CDS 45.0%
! ACTATCGGTGTTTCAGCTAC+CGG + chr7_1:77054058-77054077 Msa1039760:CDS 45.0%
GTTGATGTCCCCAAAATTCC+AGG - chr7_1:77054319-77054338 None:intergenic 45.0%
TGTTTGATCTGCTGCTGCAT+GGG - chr7_1:77054366-77054385 None:intergenic 45.0%
ATGTTTGATCTGCTGCTGCA+TGG - chr7_1:77054367-77054386 None:intergenic 45.0%
AAAGGAGCGATTGCAGTCAA+TGG + chr7_1:77054444-77054463 Msa1039760:CDS 45.0%
ATGTGGTTTCGGATGATGCC+GGG + chr7_1:77052061-77052080 Msa1039760:CDS 50.0%
!!! GCGGCTGAGGATAGTTTTGA+TGG + chr7_1:77052132-77052151 Msa1039760:CDS 50.0%
AGACGAGGATTCGGAAAAGG+AGG + chr7_1:77052164-77052183 Msa1039760:CDS 50.0%
CGAGGGCTAAAACTGGTGTA+AGG + chr7_1:77052217-77052236 Msa1039760:CDS 50.0%
! AAACTGGTGTAAGGCGTCAG+CGG + chr7_1:77052226-77052245 Msa1039760:CDS 50.0%
TGATGAAGAGGAGGATGAGG+AGG + chr7_1:77052404-77052423 Msa1039760:CDS 50.0%
GGAGGAAGAGGAAGAAGAAG+TGG + chr7_1:77052422-77052441 Msa1039760:CDS 50.0%
GAAGTGGAAGTGGAAGAGGT+AGG + chr7_1:77052480-77052499 Msa1039760:CDS 50.0%
CACGAAGATGGGCAAGAAGA+AGG + chr7_1:77052695-77052714 Msa1039760:CDS 50.0%
AGCAGAGGTCGAAAAAGGAG+TGG + chr7_1:77052747-77052766 Msa1039760:CDS 50.0%
AGCCGGAATTGGCATCTTCA+AGG - chr7_1:77052932-77052951 None:intergenic 50.0%
TCTAGACTCGCAATCTGAGC+CGG - chr7_1:77052949-77052968 None:intergenic 50.0%
GAGGAGAGCTTCTCTTCGAA+TGG + chr7_1:77053058-77053077 Msa1039760:CDS 50.0%
! TTTTCCTTACCCTTCCGTGC+TGG - chr7_1:77053134-77053153 None:intergenic 50.0%
AGAGGACTTGAAGAGTGAGG+TGG + chr7_1:77053193-77053212 Msa1039760:CDS 50.0%
GAGGACTTGAAGAGTGAGGT+GGG + chr7_1:77053194-77053213 Msa1039760:CDS 50.0%
GAAGAGTGAGGTGGGAAAAC+AGG + chr7_1:77053202-77053221 Msa1039760:CDS 50.0%
TCTGCTGTTGTTGATCGTGC+AGG - chr7_1:77053383-77053402 None:intergenic 50.0%
TGTCATCTAGGTGGAGACGA+TGG + chr7_1:77053605-77053624 Msa1039760:CDS 50.0%
!! TTGGGGAGAGAAGTACCTGA+AGG + chr7_1:77053683-77053702 Msa1039760:CDS 50.0%
GAGGTGAAGACATCAGGTTC+AGG - chr7_1:77053844-77053863 None:intergenic 50.0%
AGACATCGGAGAAGCTCCTT+CGG - chr7_1:77053927-77053946 None:intergenic 50.0%
GGGTCTCCATTCGGCATAAA+TGG - chr7_1:77054208-77054227 None:intergenic 50.0%
ATGGAGAAGGGGTCTCCATT+CGG - chr7_1:77054217-77054236 None:intergenic 50.0%
TGGTTGAGTCCTGAACCACT+GGG - chr7_1:77054261-77054280 None:intergenic 50.0%
ATGGTTGAGTCCTGAACCAC+TGG - chr7_1:77054262-77054281 None:intergenic 50.0%
GGCCTGTGAATGCAGCTATA+TGG + chr7_1:77054293-77054312 Msa1039760:CDS 50.0%
GGCCATATAGCTGCATTCAC+AGG - chr7_1:77054298-77054317 None:intergenic 50.0%
GTGAATGCAGCTATATGGCC+TGG + chr7_1:77054298-77054317 Msa1039760:CDS 50.0%
CATACCATACTCGCTGCTTG+TGG + chr7_1:77054760-77054779 Msa1039760:CDS 50.0%
ACTCGAGCACAATACGAGTG+AGG + chr7_1:77054783-77054802 Msa1039760:CDS 50.0%
AGGGTTAGGTCAAAGGGCAG+TGG + chr7_1:77052015-77052034 Msa1039760:CDS 55.0%
TTTGGATGGATGTGCGGCTG+AGG + chr7_1:77052119-77052138 Msa1039760:CDS 55.0%
AAGCCTCGAGGAAGAGACAG+AGG + chr7_1:77052262-77052281 Msa1039760:CDS 55.0%
AGCCTCGAGGAAGAGACAGA+GGG + chr7_1:77052263-77052282 Msa1039760:CDS 55.0%
AACCCTCTGTCTCTTCCTCG+AGG - chr7_1:77052268-77052287 None:intergenic 55.0%
AGAGGAGGATGAGGAGGAAG+AGG + chr7_1:77052410-77052429 Msa1039760:CDS 55.0%
CTCGCAATCTGAGCCGGAAT+TGG - chr7_1:77052943-77052962 None:intergenic 55.0%
AGAACAGGTGAGAGAAGCCG+TGG + chr7_1:77053007-77053026 Msa1039760:CDS 55.0%
AGAGAAGCCGTGGAGTTGTG+TGG + chr7_1:77053017-77053036 Msa1039760:CDS 55.0%
AGCAATGGAAGCCTCCAGCA+CGG + chr7_1:77053117-77053136 Msa1039760:CDS 55.0%
GAGGTGGGAAAACAGGTGTG+TGG + chr7_1:77053209-77053228 Msa1039760:intron 55.0%
ACAAGTGCCCGAACGTGATC+AGG + chr7_1:77053415-77053434 Msa1039760:CDS 55.0%
CAACTCAAAGCCTGCCTTCC+CGG + chr7_1:77053786-77053805 Msa1039760:CDS 55.0%
GAAGGAGCTTCTCCGATGTC+TGG + chr7_1:77053926-77053945 Msa1039760:CDS 55.0%
CTTCTCCGATGTCTGGAGGT+GGG + chr7_1:77053933-77053952 Msa1039760:CDS 55.0%
TTCTCCGATGTCTGGAGGTG+GGG + chr7_1:77053934-77053953 Msa1039760:CDS 55.0%
CACAGGCCCGTTCGAAAACA+TGG - chr7_1:77054281-77054300 None:intergenic 55.0%
TTGATCTGCTGCTGCATGGG+TGG - chr7_1:77054363-77054382 None:intergenic 55.0%
GAGTCCACAAGCAGCGAGTA+TGG - chr7_1:77054767-77054786 None:intergenic 55.0%
TCAATGTGGGGACAGACGGA+TGG - chr7_1:77054826-77054845 None:intergenic 55.0%
ATGGAAGCCTCCAGCACGGA+AGG + chr7_1:77053121-77053140 Msa1039760:CDS 60.0%
TGGAAGCCTCCAGCACGGAA+GGG + chr7_1:77053122-77053141 Msa1039760:CDS 60.0%
TCCTTACCCTTCCGTGCTGG+AGG - chr7_1:77053131-77053150 None:intergenic 60.0%
! TGAACAGGTGATGGCCGGGA+AGG - chr7_1:77053803-77053822 None:intergenic 60.0%
GGAGCTTCTCCGATGTCTGG+AGG + chr7_1:77053929-77053948 Msa1039760:CDS 60.0%
GCTTCTCCGATGTCTGGAGG+TGG + chr7_1:77053932-77053951 Msa1039760:CDS 60.0%
GAGCAATTCAAGGGGCCCAG+TGG + chr7_1:77054243-77054262 Msa1039760:CDS 60.0%
TTCAAGGGGCCCAGTGGTTC+AGG + chr7_1:77054249-77054268 Msa1039760:CDS 60.0%
CTGCTGCTGCATGGGTGGAT+TGG - chr7_1:77054358-77054377 None:intergenic 60.0%
ATGTGGGGACAGACGGATGG+TGG - chr7_1:77054823-77054842 None:intergenic 60.0%
GCCTCCAGCACGGAAGGGTA+AGG + chr7_1:77053127-77053146 Msa1039760:CDS 65.0%
GGTGCCCCACCTCCAGACAT+CGG - chr7_1:77053941-77053960 None:intergenic 65.0%
! TGGGGACAGACGGATGGTGG+AGG - chr7_1:77054820-77054839 None:intergenic 65.0%
! CAGGTGATGGCCGGGAAGGC+AGG - chr7_1:77053799-77053818 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77051970 77054978 77051970 ID=Msa1039760;Name=Msa1039760
chr7_1 mRNA 77051970 77054978 77051970 ID=Msa1039760-mRNA-1;Parent=Msa1039760;Name=Msa1039760-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|853
chr7_1 exon 77051970 77053223 77051970 ID=Msa1039760-mRNA-1:exon:20113;Parent=Msa1039760-mRNA-1
chr7_1 exon 77053359 77053436 77053359 ID=Msa1039760-mRNA-1:exon:20114;Parent=Msa1039760-mRNA-1
chr7_1 exon 77053536 77054508 77053536 ID=Msa1039760-mRNA-1:exon:20115;Parent=Msa1039760-mRNA-1
chr7_1 exon 77054722 77054978 77054722 ID=Msa1039760-mRNA-1:exon:20116;Parent=Msa1039760-mRNA-1
chr7_1 CDS 77051970 77053223 77051970 ID=Msa1039760-mRNA-1:cds;Parent=Msa1039760-mRNA-1
chr7_1 CDS 77053359 77053436 77053359 ID=Msa1039760-mRNA-1:cds;Parent=Msa1039760-mRNA-1
chr7_1 CDS 77053536 77054508 77053536 ID=Msa1039760-mRNA-1:cds;Parent=Msa1039760-mRNA-1
chr7_1 CDS 77054722 77054978 77054722 ID=Msa1039760-mRNA-1:cds;Parent=Msa1039760-mRNA-1
Gene Sequence

>Msa1039760

ATGGTAAAGGGAAGAAAGGTTAGTAGCAAACGTGATTTGAGAAAGAGGGTTAGGTCAAAGGGCAGTGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCCGGGAATGTGTCTGATTGTCCAGAGGATGATTGTTTTTCTTTGGATGGATGTGCGGCTGAGGATAGTTTTGATGGGTTTACAGAAGACGAGGATTCGGAAAAGGAGGTGATTCAACGGGTGACTAAATTTAATAGATCGAGGGCTAAAACTGGTGTAAGGCGTCAGCGGACTAATGTAAGTAAAGCCTCGAGGAAGAGACAGAGGGTTACTTATGCAGAACAACCAGAAGAAGAAGAAGAACAAGATGTAGAAAAAGGAGACGAAGAGGAAGAAGTAGAAGAAGAGGAGGAGGAAGAAGAAGATGATGATGATTACAATGATGTTGATGAAGAGGAGGATGAGGAGGAAGAGGAAGAAGAAGTGGAAGTGGAAATGGAAGAGGAAGAGGAAGAAAAAGAAGAAGTGGAAGTGGAAGAGGTAGGTGAAAATGATGAGGATGATGAATTTAAACCAGAGGAAGAAGATTTCACAGATGAGGAGGAAGAAGAAACAAGGGGCAGAAAGAAGAAAAAGGATAATTCCATTTATGAAGACGAAGAATTTAAACCGGAGGACGAAGATTACACAGATGAGGAGGAAGAAGAAACAAGGCGCATTAAGAAGAAAAATAATGGCACGAAGATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGACGAAAGAATGGAGGATCAACGAGGAAAGTACAGTGTGATGATGCAGATGATTTTTTGGATAATGTCCCAGCCATCAGAACAAATAGCAGAAAGAGATCAGTCCTGAAAAGGAGAAGGGTTATCCTTGAAGATGCCAATTCCGGCTCAGATTGCGAGTCTAGACCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCGTGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGGAAAATGAAGTGGTTGGACTATATGAAGATCTACATCAGCAATGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGACTTGAAGAGTGAGGTGGGAAAACAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGAAGAGGCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTCCGTTATGTGTTCAGAGTGTCATCTAGGTGGAGACGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGGCAACTCAAAGCCTGCCTTCCCGGCCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACCTGATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTACCGAAGGAGCTTCTCCGATGTCTGGAGGTGGGGCACCAACTTTATCAGAGAGACGGTGGATACACCGTCAAGTTCAGCAGCTACAAATTCAGCAGCTACGTTCAATTGATAGAATGGCTTCTACAACTGGCAGAACTATCGGTGTTTCAGCTACCGGTACAGTAAGTAACTTGAATAGCCCTGAAATTAATAGGGAACCAAGTTCTCAACATATAAGAACACAGGACGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTTATGCCGAATGGAGACCCCTTCTCCATAAGAATGAGCAATTCAAGGGGCCCAGTGGTTCAGGACTCAACCATGTTTTCGAACGGGCCTGTGAATGCAGCTATATGGCCTGGAATTTTGGGGACATCAACCTTATCAGATTATGGACCAATCCACCCATGCAGCAGCAGATCAAACATTGTCACTGAGGTTGGTATGCCCGCTACTGTCAAAGAAGAAGATAACTTGCACATTGTAAAGGAGCGATTGCAGTCAATGGTTAAAAGTCATCTGAAGAGATTGTCTCAAGATGCTGATTTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTCGCTGCTTGTGGACTCGAGCACAATACGAGTGAGGTTTGTACTGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAATGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGTATTTTGGACACAAGAATGTCTTCACAGTGGTTACGATTAGGACTTTAG
Protein sequence

>Msa1039760

MVKGRKVSSKRDLRKRVRSKGSGSDDSDEDYVVSDDAGNVSDCPEDDCFSLDGCAAEDSFDGFTEDEDSEKEVIQRVTKFNRSRAKTGVRRQRTNVSKASRKRQRVTYAEQPEEEEEQDVEKGDEEEEVEEEEEEEEDDDDYNDVDEEEDEEEEEEEVEVEMEEEEEEKEEVEVEEVGENDEDDEFKPEEEDFTDEEEEETRGRKKKKDNSIYEDEEFKPEDEDYTDEEEEETRRIKKKNNGTKMGKKKALKKRVSATSSRGRKRSGSRVSKKPKRKRRRKNGGSTRKVQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQVREAVELCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRWIHRQVQQLQIQQLRSIDRMASTTGRTIGVSATGTVSNLNSPEINREPSSQHIRTQDVGTSYHTFFEERLGNNISPFMPNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPGILGTSTLSDYGPIHPCSSRSNIVTEVGMPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAACGLEHNTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDVVKSILDTRMSSQWLRLGL*