AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0732600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0732600 MtrunA17_Chr5g0427491 98.830 171 1 1 1 170 1 171 2.67e-122 341
Msa0732600 MtrunA17_Chr3g0132871 58.427 178 61 7 1 170 1 173 1.55e-54 170
Msa0732600 MtrunA17_Chr5g0412221 50.000 176 75 8 1 169 1 170 3.39e-42 139
Msa0732600 MtrunA17_Chr8g0367531 50.400 125 52 4 54 169 48 171 4.96e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0732600 AT4G38060.3 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0732600 AT4G38060.2 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0732600 AT4G38060.4 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0732600 AT5G65480.1 39.759 83 42 3 85 167 76 150 2.28e-11 59.3

Find 56 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATGGTGGATGTGTTTC+TGG 0.033913 5_1:+45158637 Msa0732600:CDS
TCACAACAATGTGGTGAAAT+TGG 0.174455 5_1:+45160081 Msa0732600:three_prime_UTR
AAAACTTCTTGAGTTCTAAT+TGG 0.205517 5_1:+45157510 Msa0732600:five_prime_UTR
CCTTGTTATGGAAGAGATTA+TGG 0.254169 5_1:+45158763 Msa0732600:CDS
AATATGATTGGTAAACTTCT+TGG 0.258151 5_1:+45159945 Msa0732600:three_prime_UTR
CCAATCTCTCATGGTGGTTA+TGG 0.284622 5_1:+45158410 Msa0732600:CDS
CAAGAAAGGTGAAGAGAAAA+TGG 0.289877 5_1:+45158557 Msa0732600:CDS
AGAGAAACATGTTTGAAGTT+TGG 0.311863 5_1:+45160109 Msa0732600:three_prime_UTR
TGAAGAGAAAATGGAATAGT+AGG 0.316249 5_1:+45158566 Msa0732600:CDS
AAGAGAGGAGGAAAGTAGAT+AGG 0.329784 5_1:+45158590 Msa0732600:CDS
ACAATATACAAATTATTTGT+TGG 0.340337 5_1:-45159866 None:intergenic
GCAAGAAATATGTGGAAAAC+TGG 0.361128 5_1:+45159760 Msa0732600:CDS
TGACAATGTCTTCTCCTCAT+AGG 0.363084 5_1:-45159981 None:intergenic
GATGATTCTGATTGGTCAAT+TGG 0.374079 5_1:+45158670 Msa0732600:CDS
TGAGGTAATGAGATTTCCTT+TGG 0.393984 5_1:+45158510 Msa0732600:CDS
CACAACAATGTGGTGAAATT+GGG 0.398333 5_1:+45160082 Msa0732600:three_prime_UTR
GTTGTTCTTGTTCCTTCTGA+TGG 0.413282 5_1:+45158622 Msa0732600:CDS
AGAGAGGAGGAAAGTAGATA+GGG 0.446591 5_1:+45158591 Msa0732600:CDS
CAAGAACCAAGAATCTCAAA+AGG 0.446650 5_1:+45158445 Msa0732600:CDS
GAAGAGAAAATGGAATAGTA+GGG 0.469666 5_1:+45158567 Msa0732600:CDS
CCATAACCACCATGAGAGAT+TGG 0.475688 5_1:-45158410 None:intergenic
CCTATGTTTGCTTGCACCAA+AGG 0.477638 5_1:-45158526 None:intergenic
TTCAACAGATTTGAACATGT+TGG 0.479485 5_1:+45158483 Msa0732600:CDS
CGGAATCCGATGATTCTGAT+TGG 0.482757 5_1:+45158662 Msa0732600:CDS
ACGATGAAGATTAGTGTGTC+AGG 0.483839 5_1:-45159802 None:intergenic
TGATTGGTCAATTGGATGGT+TGG 0.487254 5_1:+45158678 Msa0732600:CDS
TGGTGGATGTGTTTCTGGTT+CGG 0.487310 5_1:+45158642 Msa0732600:CDS
CCTTTGGTGCAAGCAAACAT+AGG 0.502632 5_1:+45158526 Msa0732600:CDS
CATAGGATCATCATCAAGAA+AGG 0.508029 5_1:+45158543 Msa0732600:CDS
AATGGAATAGTAGGGAAGAG+AGG 0.508759 5_1:+45158575 Msa0732600:CDS
GTTCTTGTTCCTTCTGATGG+TGG 0.509264 5_1:+45158625 Msa0732600:CDS
ACTAAAAGCAACTTACTCAA+TGG 0.526904 5_1:+45158802 Msa0732600:CDS
TTATCAGTTTCATCATCACT+TGG 0.530693 5_1:-45158721 None:intergenic
AGCAACTTACTCAATGGTGT+TGG 0.531403 5_1:+45158808 Msa0732600:CDS
GATAATAATTGAAACCTATG+AGG 0.531958 5_1:+45159967 Msa0732600:three_prime_UTR
ATTGGATGGTTGGAACCTCA+TGG 0.532027 5_1:+45158688 Msa0732600:CDS
TGTCAAGAATAAAGCAATTG+TGG 0.541510 5_1:+45159999 Msa0732600:three_prime_UTR
TTTGAACATGTTGGAATCTG+AGG 0.545709 5_1:+45158492 Msa0732600:CDS
ATTCTGATTGGTCAATTGGA+TGG 0.551491 5_1:+45158674 Msa0732600:CDS
AATTGACCAATCAGAATCAT+CGG 0.564384 5_1:-45158668 None:intergenic
CTCTCATGGTGGTTATGGAG+TGG 0.566656 5_1:+45158415 Msa0732600:CDS
CCATAATCTCTTCCATAACA+AGG 0.570281 5_1:-45158763 None:intergenic
GATGTGATGTCAAATATGAT+TGG 0.573394 5_1:+45159933 Msa0732600:three_prime_UTR
TGGCATTCACCAATCTCTCA+TGG 0.573580 5_1:+45158401 Msa0732600:CDS
TGGTTGGAACCTCATGGACC+TGG 0.574553 5_1:+45158694 Msa0732600:CDS
ATTTGTTGGCTTAAGATCAG+AGG 0.574843 5_1:-45159852 None:intergenic
AAGAACCAAGAATCTCAAAA+GGG 0.581798 5_1:+45158446 Msa0732600:CDS
TGCAGAAAGCAAGAAATATG+TGG 0.588632 5_1:+45159752 Msa0732600:intron
TCATCATCACTTGGAAAACC+AGG 0.594451 5_1:-45158712 None:intergenic
GGAATAGTAGGGAAGAGAGG+AGG 0.604239 5_1:+45158578 Msa0732600:CDS
GAAACACATCCACCATCAGA+AGG 0.625569 5_1:-45158634 None:intergenic
AATTCGACGTAAATAAATGT+CGG 0.636507 5_1:+45158378 Msa0732600:exon
CTTGGAAAACCAGGTCCATG+AGG 0.659242 5_1:-45158703 None:intergenic
TCGACGTAAATAAATGTCGG+TGG 0.661450 5_1:+45158381 Msa0732600:exon
CATTCACCAATCTCTCATGG+TGG 0.721722 5_1:+45158404 Msa0732600:CDS
CTTTGAGAATCACAACAATG+TGG 0.751456 5_1:+45160072 Msa0732600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTGTAAAAAAAAAAAAAAA+AGG + chr5_1:45159893-45159912 Msa0732600:three_prime_UTR 10.0%
!! AATACAAAAACATAATTAAG+GGG - chr5_1:45157939-45157958 None:intergenic 15.0%
!! CAATACAAAAACATAATTAA+GGG - chr5_1:45157940-45157959 None:intergenic 15.0%
!! TCAATACAAAAACATAATTA+AGG - chr5_1:45157941-45157960 None:intergenic 15.0%
!!! TATCTTTTTTGTAAAAAGTT+AGG + chr5_1:45159379-45159398 Msa0732600:intron 15.0%
!!! ATCTTTTTTGTAAAAAGTTA+GGG + chr5_1:45159380-45159399 Msa0732600:intron 15.0%
!! ACAATATACAAATTATTTGT+TGG - chr5_1:45159869-45159888 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAAGGAG+AGG + chr5_1:45159898-45159917 Msa0732600:three_prime_UTR 15.0%
!! AAAAAAAAAAAAAAAGGAGA+GGG + chr5_1:45159899-45159918 Msa0732600:three_prime_UTR 15.0%
!!! ATATTTTTAGAAACTTTCTC+AGG + chr5_1:45157536-45157555 Msa0732600:five_prime_UTR 20.0%
!!! AGGTTATTTTGTACTTTTTA+AGG + chr5_1:45157556-45157575 Msa0732600:five_prime_UTR 20.0%
!!! TATTTTATCATTTTAGCTTC+TGG + chr5_1:45157694-45157713 Msa0732600:intron 20.0%
!!! ATTTTATCATTTTAGCTTCT+GGG + chr5_1:45157695-45157714 Msa0732600:intron 20.0%
!!! GTTTTTGTTTTCCTATTTTA+AGG + chr5_1:45157900-45157919 Msa0732600:intron 20.0%
!! GATTAAAATCAGAAAATGTT+TGG - chr5_1:45158204-45158223 None:intergenic 20.0%
!!! TTTTTAGATAGTTATTCTGA+TGG + chr5_1:45158835-45158854 Msa0732600:CDS 20.0%
!! TATAATATGAATGCTTGAAT+TGG + chr5_1:45158947-45158966 Msa0732600:intron 20.0%
!! GATAGAACTTTATAATTACA+AGG - chr5_1:45158992-45159011 None:intergenic 20.0%
!!! ATTTTGTAATATTGACAATG+TGG - chr5_1:45159026-45159045 None:intergenic 20.0%
!! TCCATAAAATTGCAAAATAT+TGG + chr5_1:45159048-45159067 Msa0732600:intron 20.0%
!!! ACCAATATTTTGCAATTTTA+TGG - chr5_1:45159052-45159071 None:intergenic 20.0%
!!! TTTAGAATATCAATAATGTG+AGG + chr5_1:45159198-45159217 Msa0732600:intron 20.0%
!! TTAGAATATCAATAATGTGA+GGG + chr5_1:45159199-45159218 Msa0732600:intron 20.0%
!! ATTCATATCTGTTATCATTT+AGG - chr5_1:45159612-45159631 None:intergenic 20.0%
!!! TTCAGATTTTATTTTTCTTC+TGG + chr5_1:45159690-45159709 Msa0732600:intron 20.0%
!!! TTTTGTATAATAATGCGTTT+TGG + chr5_1:45160257-45160276 Msa0732600:three_prime_UTR 20.0%
!! AAAACTTCTTGAGTTCTAAT+TGG + chr5_1:45157510-45157529 Msa0732600:five_prime_UTR 25.0%
! ATTCATGAACTTCTATTTCA+AGG - chr5_1:45157637-45157656 None:intergenic 25.0%
! TTCACAAATCAGATAAAACA+AGG - chr5_1:45157735-45157754 None:intergenic 25.0%
!! TTGAGTTAAATTGTTAGCTT+AGG + chr5_1:45157818-45157837 Msa0732600:intron 25.0%
! AAAAAGGACAACCTTAAAAT+AGG - chr5_1:45157914-45157933 None:intergenic 25.0%
! ACATAATTAAGGGGAAAAAA+AGG - chr5_1:45157930-45157949 None:intergenic 25.0%
!! TGTACTTAGAACTAATGTTT+TGG + chr5_1:45158029-45158048 Msa0732600:intron 25.0%
!! GTACTTAGAACTAATGTTTT+GGG + chr5_1:45158030-45158049 Msa0732600:intron 25.0%
!! ATGTATATTGCACAATTTTC+AGG + chr5_1:45158079-45158098 Msa0732600:intron 25.0%
! AAGAACAAAAGTTAGTAACA+AGG - chr5_1:45158336-45158355 None:intergenic 25.0%
! AATTCGACGTAAATAAATGT+CGG + chr5_1:45158378-45158397 Msa0732600:exon 25.0%
!!! TGATAATAGTTTTGCAGTTT+TGG + chr5_1:45158738-45158757 Msa0732600:CDS 25.0%
!!! GATGGTAAGTGTATTTTTAT+CGG + chr5_1:45158853-45158872 Msa0732600:intron 25.0%
!! GATTAACTTTTTGTAATGTG+AGG + chr5_1:45159169-45159188 Msa0732600:intron 25.0%
!!! ATTTCTCATCTGTTTTTCTA+TGG + chr5_1:45159449-45159468 Msa0732600:intron 25.0%
!!! TTTCTCATCTGTTTTTCTAT+GGG + chr5_1:45159450-45159469 Msa0732600:intron 25.0%
! TTGTGCATATGTTAATTATG+TGG + chr5_1:45159664-45159683 Msa0732600:intron 25.0%
! TTCTGCAACAACAAAAAAAA+AGG - chr5_1:45159739-45159758 None:intergenic 25.0%
! AATATGATTGGTAAACTTCT+TGG + chr5_1:45159945-45159964 Msa0732600:three_prime_UTR 25.0%
! GATAATAATTGAAACCTATG+AGG + chr5_1:45159967-45159986 Msa0732600:three_prime_UTR 25.0%
!!! TGTTTGTGTTGGCTATTTTA+AGG + chr5_1:45157873-45157892 Msa0732600:intron 30.0%
TATTGATCATGTGACCAATT+GGG + chr5_1:45157955-45157974 Msa0732600:intron 30.0%
!!! GTTTTTAGTTCTCTGAATTG+TGG + chr5_1:45157977-45157996 Msa0732600:intron 30.0%
!!! TAGAACTAATGTTTTGGGTT+TGG + chr5_1:45158035-45158054 Msa0732600:intron 30.0%
!!! TAATGTTTTGGGTTTGGTTT+TGG + chr5_1:45158041-45158060 Msa0732600:intron 30.0%
!!! AATGTTTTGGGTTTGGTTTT+GGG + chr5_1:45158042-45158061 Msa0732600:intron 30.0%
! CTTGAACTAAAAGCACAAAA+AGG - chr5_1:45158174-45158193 None:intergenic 30.0%
AAGAACCAAGAATCTCAAAA+GGG + chr5_1:45158446-45158465 Msa0732600:CDS 30.0%
TTCAACAGATTTGAACATGT+TGG + chr5_1:45158483-45158502 Msa0732600:CDS 30.0%
TGAAGAGAAAATGGAATAGT+AGG + chr5_1:45158566-45158585 Msa0732600:CDS 30.0%
GAAGAGAAAATGGAATAGTA+GGG + chr5_1:45158567-45158586 Msa0732600:CDS 30.0%
AATTGACCAATCAGAATCAT+CGG - chr5_1:45158671-45158690 None:intergenic 30.0%
TTATCAGTTTCATCATCACT+TGG - chr5_1:45158724-45158743 None:intergenic 30.0%
ACTAAAAGCAACTTACTCAA+TGG + chr5_1:45158802-45158821 Msa0732600:CDS 30.0%
TTGTAATATTGACAATGTGG+AGG - chr5_1:45159023-45159042 None:intergenic 30.0%
TTGCAAAATATTGGTCAAGT+TGG + chr5_1:45159057-45159076 Msa0732600:intron 30.0%
!! TTGTCTCTGAGTTTTTGTTT+GGG + chr5_1:45159313-45159332 Msa0732600:intron 30.0%
!! TATGTCAGTGGTTAATTTGT+CGG + chr5_1:45159475-45159494 Msa0732600:intron 30.0%
!! TTGAAGGAGTATTATGAAAG+AGG - chr5_1:45159542-45159561 None:intergenic 30.0%
TTTGAAAATCTTGCTGCATT+TGG + chr5_1:45159631-45159650 Msa0732600:intron 30.0%
GATGTGATGTCAAATATGAT+TGG + chr5_1:45159933-45159952 Msa0732600:three_prime_UTR 30.0%
TGTCAAGAATAAAGCAATTG+TGG + chr5_1:45159999-45160018 Msa0732600:three_prime_UTR 30.0%
! AGAGAAACATGTTTGAAGTT+TGG + chr5_1:45160109-45160128 Msa0732600:three_prime_UTR 30.0%
! TGTTAGCTTAGGATGTGATT+TGG + chr5_1:45157829-45157848 Msa0732600:intron 35.0%
!!! GTGTTGGCTATTTTAAGGTT+TGG + chr5_1:45157878-45157897 Msa0732600:intron 35.0%
! GTATTGATCATGTGACCAAT+TGG + chr5_1:45157954-45157973 Msa0732600:intron 35.0%
CAGAGAACTAAAAACCCAAT+TGG - chr5_1:45157972-45157991 None:intergenic 35.0%
ATGTTGCAGCACAACAAAAA+GGG - chr5_1:45158243-45158262 None:intergenic 35.0%
! TAACTTTTGTTCTTCTCGAC+AGG + chr5_1:45158342-45158361 Msa0732600:intron 35.0%
CAAGAACCAAGAATCTCAAA+AGG + chr5_1:45158445-45158464 Msa0732600:CDS 35.0%
TTTGAACATGTTGGAATCTG+AGG + chr5_1:45158492-45158511 Msa0732600:CDS 35.0%
TGAGGTAATGAGATTTCCTT+TGG + chr5_1:45158510-45158529 Msa0732600:CDS 35.0%
CATAGGATCATCATCAAGAA+AGG + chr5_1:45158543-45158562 Msa0732600:CDS 35.0%
CAAGAAAGGTGAAGAGAAAA+TGG + chr5_1:45158557-45158576 Msa0732600:CDS 35.0%
! GATGATTCTGATTGGTCAAT+TGG + chr5_1:45158670-45158689 Msa0732600:CDS 35.0%
! ATTCTGATTGGTCAATTGGA+TGG + chr5_1:45158674-45158693 Msa0732600:CDS 35.0%
CCATAATCTCTTCCATAACA+AGG - chr5_1:45158766-45158785 None:intergenic 35.0%
! CCTTGTTATGGAAGAGATTA+TGG + chr5_1:45158763-45158782 Msa0732600:CDS 35.0%
ATTGGAGTAGATACTCTAGT+TGG + chr5_1:45158965-45158984 Msa0732600:intron 35.0%
GGAGTAAATGCTCAAATTGT+AGG - chr5_1:45159241-45159260 None:intergenic 35.0%
AGCATTTACTCCCTTGAATT+GGG + chr5_1:45159249-45159268 Msa0732600:intron 35.0%
AACAGTTCAACCCAATTCAA+GGG - chr5_1:45159262-45159281 None:intergenic 35.0%
! GTTGTCTCTGAGTTTTTGTT+TGG + chr5_1:45159312-45159331 Msa0732600:intron 35.0%
ATAAGCATACTTCAATGGAG+TGG - chr5_1:45159422-45159441 None:intergenic 35.0%
GTGCTATAAGCATACTTCAA+TGG - chr5_1:45159427-45159446 None:intergenic 35.0%
TTTCTATGGGAATATGTCAG+TGG + chr5_1:45159463-45159482 Msa0732600:intron 35.0%
!! ATGTCAGTGGTTAATTTGTC+GGG + chr5_1:45159476-45159495 Msa0732600:intron 35.0%
! TTCATGAAAGTGTAGCCTAA+TGG - chr5_1:45159576-45159595 None:intergenic 35.0%
TGCAGAAAGCAAGAAATATG+TGG + chr5_1:45159752-45159771 Msa0732600:intron 35.0%
GCAAGAAATATGTGGAAAAC+TGG + chr5_1:45159760-45159779 Msa0732600:CDS 35.0%
! GGATTTTGTCATGAAGATAC+AGG - chr5_1:45159834-45159853 None:intergenic 35.0%
!! ATTTGTTGGCTTAAGATCAG+AGG - chr5_1:45159855-45159874 None:intergenic 35.0%
! CTTTGAGAATCACAACAATG+TGG + chr5_1:45160072-45160091 Msa0732600:three_prime_UTR 35.0%
TCACAACAATGTGGTGAAAT+TGG + chr5_1:45160081-45160100 Msa0732600:three_prime_UTR 35.0%
CACAACAATGTGGTGAAATT+GGG + chr5_1:45160082-45160101 Msa0732600:three_prime_UTR 35.0%
!! AGGATGTGATTTGGTTACCT+TGG + chr5_1:45157838-45157857 Msa0732600:intron 40.0%
!! TGTGATTTGGTTACCTTGGT+AGG + chr5_1:45157842-45157861 Msa0732600:intron 40.0%
AAACAAATCCTCACCTACCA+AGG - chr5_1:45157858-45157877 None:intergenic 40.0%
! AGGTGAGGATTTGTTTGTGT+TGG + chr5_1:45157862-45157881 Msa0732600:intron 40.0%
TGTTGCAGCACAACAAAAAG+GGG - chr5_1:45158242-45158261 None:intergenic 40.0%
GATGTTGCAGCACAACAAAA+AGG - chr5_1:45158244-45158263 None:intergenic 40.0%
TCGACGTAAATAAATGTCGG+TGG + chr5_1:45158381-45158400 Msa0732600:exon 40.0%
!!! GAAGTCCCTTTTGAGATTCT+TGG - chr5_1:45158454-45158473 None:intergenic 40.0%
AATGGAATAGTAGGGAAGAG+AGG + chr5_1:45158575-45158594 Msa0732600:CDS 40.0%
AAGAGAGGAGGAAAGTAGAT+AGG + chr5_1:45158590-45158609 Msa0732600:CDS 40.0%
AGAGAGGAGGAAAGTAGATA+GGG + chr5_1:45158591-45158610 Msa0732600:CDS 40.0%
GTTGTTCTTGTTCCTTCTGA+TGG + chr5_1:45158622-45158641 Msa0732600:CDS 40.0%
! TGATTGGTCAATTGGATGGT+TGG + chr5_1:45158678-45158697 Msa0732600:CDS 40.0%
TCATCATCACTTGGAAAACC+AGG - chr5_1:45158715-45158734 None:intergenic 40.0%
!!! GCAGTTTTGGTTCCTTGTTA+TGG + chr5_1:45158751-45158770 Msa0732600:CDS 40.0%
AGCAACTTACTCAATGGTGT+TGG + chr5_1:45158808-45158827 Msa0732600:CDS 40.0%
TATTGACAATGTGGAGGACT+GGG - chr5_1:45159017-45159036 None:intergenic 40.0%
ATATTGACAATGTGGAGGAC+TGG - chr5_1:45159018-45159037 None:intergenic 40.0%
TCCCTATAAATACCAACCGA+GGG + chr5_1:45159138-45159157 Msa0732600:intron 40.0%
! TCCCTCGGTTGGTATTTATA+GGG - chr5_1:45159142-45159161 None:intergenic 40.0%
TATAAATACCAACCGAGGGA+CGG + chr5_1:45159142-45159161 Msa0732600:intron 40.0%
AGTTAATCAATTCCGTCCCT+CGG - chr5_1:45159157-45159176 None:intergenic 40.0%
GAGCATTTACTCCCTTGAAT+TGG + chr5_1:45159248-45159267 Msa0732600:intron 40.0%
CAACAGTTCAACCCAATTCA+AGG - chr5_1:45159263-45159282 None:intergenic 40.0%
!! TGTCAGTGGTTAATTTGTCG+GGG + chr5_1:45159477-45159496 Msa0732600:intron 40.0%
AATGGTGGTTGGAACATTGA+AGG - chr5_1:45159558-45159577 None:intergenic 40.0%
TCAATGTTCCAACCACCATT+AGG + chr5_1:45159558-45159577 Msa0732600:intron 40.0%
! ATGAAAGTGTAGCCTAATGG+TGG - chr5_1:45159573-45159592 None:intergenic 40.0%
ACGATGAAGATTAGTGTGTC+AGG - chr5_1:45159805-45159824 None:intergenic 40.0%
! AAAAAAAAAGGAGAGGGCAC+TGG + chr5_1:45159905-45159924 Msa0732600:three_prime_UTR 40.0%
TGACAATGTCTTCTCCTCAT+AGG - chr5_1:45159984-45160003 None:intergenic 40.0%
TTTGGTTACCTTGGTAGGTG+AGG + chr5_1:45157847-45157866 Msa0732600:intron 45.0%
TGGCATTCACCAATCTCTCA+TGG + chr5_1:45158401-45158420 Msa0732600:CDS 45.0%
CATTCACCAATCTCTCATGG+TGG + chr5_1:45158404-45158423 Msa0732600:CDS 45.0%
CCATAACCACCATGAGAGAT+TGG - chr5_1:45158413-45158432 None:intergenic 45.0%
CCAATCTCTCATGGTGGTTA+TGG + chr5_1:45158410-45158429 Msa0732600:CDS 45.0%
CCTATGTTTGCTTGCACCAA+AGG - chr5_1:45158529-45158548 None:intergenic 45.0%
! CCTTTGGTGCAAGCAAACAT+AGG + chr5_1:45158526-45158545 Msa0732600:CDS 45.0%
GTTCTTGTTCCTTCTGATGG+TGG + chr5_1:45158625-45158644 Msa0732600:CDS 45.0%
GAAACACATCCACCATCAGA+AGG - chr5_1:45158637-45158656 None:intergenic 45.0%
!! TCTGATGGTGGATGTGTTTC+TGG + chr5_1:45158637-45158656 Msa0732600:CDS 45.0%
!! TGGTGGATGTGTTTCTGGTT+CGG + chr5_1:45158642-45158661 Msa0732600:CDS 45.0%
CGGAATCCGATGATTCTGAT+TGG + chr5_1:45158662-45158681 Msa0732600:CDS 45.0%
ATTGGATGGTTGGAACCTCA+TGG + chr5_1:45158688-45158707 Msa0732600:CDS 45.0%
GTCCCTATAAATACCAACCG+AGG + chr5_1:45159137-45159156 Msa0732600:intron 45.0%
! GTCCCTCGGTTGGTATTTAT+AGG - chr5_1:45159143-45159162 None:intergenic 45.0%
AGCATACTTCAATGGAGTGG+AGG - chr5_1:45159419-45159438 None:intergenic 45.0%
!! GGTTAATTTGTCGGGGAAAG+AGG + chr5_1:45159484-45159503 Msa0732600:intron 45.0%
AAGTGTAGCCTAATGGTGGT+TGG - chr5_1:45159569-45159588 None:intergenic 45.0%
!!! AAAATTTGTTTTTTAATTTT+TGG + chr5_1:45157766-45157785 Msa0732600:intron 5.0%
CTCTCATGGTGGTTATGGAG+TGG + chr5_1:45158415-45158434 Msa0732600:CDS 50.0%
GGAATAGTAGGGAAGAGAGG+AGG + chr5_1:45158578-45158597 Msa0732600:CDS 50.0%
CTTGGAAAACCAGGTCCATG+AGG - chr5_1:45158706-45158725 None:intergenic 50.0%
AATCAATTCCGTCCCTCGGT+TGG - chr5_1:45159153-45159172 None:intergenic 50.0%
TGGTTGGAACCTCATGGACC+TGG + chr5_1:45158694-45158713 Msa0732600:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 45157425 45160286 45157425 ID=Msa0732600;Name=Msa0732600
chr5_1 mRNA 45157425 45160286 45157425 ID=Msa0732600-mRNA-1;Parent=Msa0732600;Name=Msa0732600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|0.5|0.33|3|480|170
chr5_1 exon 45157425 45157577 45157425 ID=Msa0732600-mRNA-1:exon:12847;Parent=Msa0732600-mRNA-1
chr5_1 exon 45158364 45158856 45158364 ID=Msa0732600-mRNA-1:exon:12848;Parent=Msa0732600-mRNA-1
chr5_1 exon 45159757 45160286 45159757 ID=Msa0732600-mRNA-1:exon:12849;Parent=Msa0732600-mRNA-1
chr5_1 five_prime_UTR 45157425 45157577 45157425 ID=Msa0732600-mRNA-1:five_prime_utr;Parent=Msa0732600-mRNA-1
chr5_1 five_prime_UTR 45158364 45158393 45158364 ID=Msa0732600-mRNA-1:five_prime_utr;Parent=Msa0732600-mRNA-1
chr5_1 CDS 45158394 45158856 45158394 ID=Msa0732600-mRNA-1:cds;Parent=Msa0732600-mRNA-1
chr5_1 CDS 45159757 45159806 45159757 ID=Msa0732600-mRNA-1:cds;Parent=Msa0732600-mRNA-1
chr5_1 three_prime_UTR 45159807 45160286 45159807 ID=Msa0732600-mRNA-1:three_prime_utr;Parent=Msa0732600-mRNA-1
Gene Sequence

>Msa0732600

ATGTCGGTGGCATTCACCAATCTCTCATGGTGGTTATGGAGTGGAAAACATCAAGAACCAAGAATCTCAAAAGGGACTTCAATAAATTCTTCAACAGATTTGAACATGTTGGAATCTGAGGTAATGAGATTTCCTTTGGTGCAAGCAAACATAGGATCATCATCAAGAAAGGTGAAGAGAAAATGGAATAGTAGGGAAGAGAGGAGGAAAGTAGATAGGGAATATGATGTTGTTCTTGTTCCTTCTGATGGTGGATGTGTTTCTGGTTCGGAATCCGATGATTCTGATTGGTCAATTGGATGGTTGGAACCTCATGGACCTGGTTTTCCAAGTGATGATGAAACTGATAATAGTTTTGCAGTTTTGGTTCCTTGTTATGGAAGAGATTATGGTAGAATTGAAGAAGATACTAAAAGCAACTTACTCAATGGTGTTGGACATTTTTTAGATAGTTATTCTGATGAAAGCAAGAAATATGTGGAAAACTGGCTATCTTCTATTCGAAATACCTGA

Protein sequence

>Msa0732600

MSVAFTNLSWWLWSGKHQEPRISKGTSINSSTDLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERRKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIEEDTKSNLLNGVGHFLDSYSDESKKYVENWLSSIRNT*